@cirrobio/api-client 0.0.20-alpha → 0.0.22-alpha

package/.openapi-generator/FILES

@@ -55,6 +55,7 @@ src/models/ProjectSettings.ts
 src/models/ProjectUser.ts
 src/models/Reference.ts
 src/models/ReferenceType.ts
+src/models/RunAnalysisRequest.ts
 src/models/Sample.ts
 src/models/SampleRequest.ts
 src/models/ServiceConnection.ts

package/README.md

@@ -36,7 +36,7 @@ navigate to the folder of your consuming project and run one of the following co
 _published:_
 
 ```
-npm install @cirrobio/api-client@0.0.20-alpha --save
+npm install @cirrobio/api-client@0.0.22-alpha --save
 ```
 
 _unPublished (not recommended):_

package/dist/apis/DatasetsApi.d.ts

@@ -32,10 +32,22 @@ export interface ImportPublicDatasetRequest {
     projectId: string;
     importDataRequest: ImportDataRequest;
 }
+export interface IngestSamplesRequest {
+    projectId: string;
+    datasetId: string;
+}
+export interface RegenerateManifestRequest {
+    projectId: string;
+    datasetId: string;
+}
 export interface RegisterDatasetRequest {
     projectId: string;
     uploadDatasetRequest: UploadDatasetRequest;
 }
+export interface RerunTransformRequest {
+    projectId: string;
+    datasetId: string;
+}
 export interface UpdateDatasetOperationRequest {
     projectId: string;
     datasetId: string;
@@ -95,6 +107,26 @@ export declare class DatasetsApi extends runtime.BaseAPI {
      * Import public dataset
      */
     importPublicDataset(requestParameters: ImportPublicDatasetRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<CreateResponse>;
+    /**
+     * Rerun sample ingest (TODO).
+     * Rerun sample ingest
+     */
+    ingestSamplesRaw(requestParameters: IngestSamplesRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<runtime.ApiResponse<void>>;
+    /**
+     * Rerun sample ingest (TODO).
+     * Rerun sample ingest
+     */
+    ingestSamples(requestParameters: IngestSamplesRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<void>;
+    /**
+     * Regenerate dataset manifest (TODO).
+     * Regenerate dataset manifest
+     */
+    regenerateManifestRaw(requestParameters: RegenerateManifestRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<runtime.ApiResponse<void>>;
+    /**
+     * Regenerate dataset manifest (TODO).
+     * Regenerate dataset manifest
+     */
+    regenerateManifest(requestParameters: RegenerateManifestRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<void>;
     /**
      * Registers a dataset in the system that you upload files into
      * Upload private dataset
@@ -105,6 +137,16 @@ export declare class DatasetsApi extends runtime.BaseAPI {
      * Upload private dataset
      */
     registerDataset(requestParameters: RegisterDatasetRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<UploadDatasetCreateResponse>;
+    /**
+     * Rerun data transforms (TODO).
+     * Rerun data transforms
+     */
+    rerunTransformRaw(requestParameters: RerunTransformRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<runtime.ApiResponse<void>>;
+    /**
+     * Rerun data transforms (TODO).
+     * Rerun data transforms
+     */
+    rerunTransform(requestParameters: RerunTransformRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<void>;
     /**
      * Update info on a dataset
      * Update dataset

package/dist/apis/DatasetsApi.js

@@ -376,6 +376,118 @@ var DatasetsApi = /** @class */ (function (_super) {
             });
         });
     };
+    /**
+     * Rerun sample ingest (TODO).
+     * Rerun sample ingest
+     */
+    DatasetsApi.prototype.ingestSamplesRaw = function (requestParameters, initOverrides) {
+        return __awaiter(this, void 0, void 0, function () {
+            var queryParameters, headerParameters, token, tokenString, response;
+            return __generator(this, function (_a) {
+                switch (_a.label) {
+                    case 0:
+                        if (requestParameters.projectId === null || requestParameters.projectId === undefined) {
+                            throw new runtime.RequiredError('projectId', 'Required parameter requestParameters.projectId was null or undefined when calling ingestSamples.');
+                        }
+                        if (requestParameters.datasetId === null || requestParameters.datasetId === undefined) {
+                            throw new runtime.RequiredError('datasetId', 'Required parameter requestParameters.datasetId was null or undefined when calling ingestSamples.');
+                        }
+                        queryParameters = {};
+                        headerParameters = {};
+                        if (!(this.configuration && this.configuration.accessToken)) return [3 /*break*/, 2];
+                        token = this.configuration.accessToken;
+                        return [4 /*yield*/, token("accessToken", [])];
+                    case 1:
+                        tokenString = _a.sent();
+                        if (tokenString) {
+                            headerParameters["Authorization"] = "Bearer ".concat(tokenString);
+                        }
+                        _a.label = 2;
+                    case 2: return [4 /*yield*/, this.request({
+                            path: "/projects/{projectId}/datasets/{datasetId}/ingest-samples".replace("{".concat("projectId", "}"), encodeURIComponent(String(requestParameters.projectId))).replace("{".concat("datasetId", "}"), encodeURIComponent(String(requestParameters.datasetId))),
+                            method: 'PUT',
+                            headers: headerParameters,
+                            query: queryParameters,
+                        }, initOverrides)];
+                    case 3:
+                        response = _a.sent();
+                        return [2 /*return*/, new runtime.VoidApiResponse(response)];
+                }
+            });
+        });
+    };
+    /**
+     * Rerun sample ingest (TODO).
+     * Rerun sample ingest
+     */
+    DatasetsApi.prototype.ingestSamples = function (requestParameters, initOverrides) {
+        return __awaiter(this, void 0, void 0, function () {
+            return __generator(this, function (_a) {
+                switch (_a.label) {
+                    case 0: return [4 /*yield*/, this.ingestSamplesRaw(requestParameters, initOverrides)];
+                    case 1:
+                        _a.sent();
+                        return [2 /*return*/];
+                }
+            });
+        });
+    };
+    /**
+     * Regenerate dataset manifest (TODO).
+     * Regenerate dataset manifest
+     */
+    DatasetsApi.prototype.regenerateManifestRaw = function (requestParameters, initOverrides) {
+        return __awaiter(this, void 0, void 0, function () {
+            var queryParameters, headerParameters, token, tokenString, response;
+            return __generator(this, function (_a) {
+                switch (_a.label) {
+                    case 0:
+                        if (requestParameters.projectId === null || requestParameters.projectId === undefined) {
+                            throw new runtime.RequiredError('projectId', 'Required parameter requestParameters.projectId was null or undefined when calling regenerateManifest.');
+                        }
+                        if (requestParameters.datasetId === null || requestParameters.datasetId === undefined) {
+                            throw new runtime.RequiredError('datasetId', 'Required parameter requestParameters.datasetId was null or undefined when calling regenerateManifest.');
+                        }
+                        queryParameters = {};
+                        headerParameters = {};
+                        if (!(this.configuration && this.configuration.accessToken)) return [3 /*break*/, 2];
+                        token = this.configuration.accessToken;
+                        return [4 /*yield*/, token("accessToken", [])];
+                    case 1:
+                        tokenString = _a.sent();
+                        if (tokenString) {
+                            headerParameters["Authorization"] = "Bearer ".concat(tokenString);
+                        }
+                        _a.label = 2;
+                    case 2: return [4 /*yield*/, this.request({
+                            path: "/projects/{projectId}/datasets/{datasetId}/regenerate-manifest".replace("{".concat("projectId", "}"), encodeURIComponent(String(requestParameters.projectId))).replace("{".concat("datasetId", "}"), encodeURIComponent(String(requestParameters.datasetId))),
+                            method: 'PUT',
+                            headers: headerParameters,
+                            query: queryParameters,
+                        }, initOverrides)];
+                    case 3:
+                        response = _a.sent();
+                        return [2 /*return*/, new runtime.VoidApiResponse(response)];
+                }
+            });
+        });
+    };
+    /**
+     * Regenerate dataset manifest (TODO).
+     * Regenerate dataset manifest
+     */
+    DatasetsApi.prototype.regenerateManifest = function (requestParameters, initOverrides) {
+        return __awaiter(this, void 0, void 0, function () {
+            return __generator(this, function (_a) {
+                switch (_a.label) {
+                    case 0: return [4 /*yield*/, this.regenerateManifestRaw(requestParameters, initOverrides)];
+                    case 1:
+                        _a.sent();
+                        return [2 /*return*/];
+                }
+            });
+        });
+    };
     /**
      * Registers a dataset in the system that you upload files into
      * Upload private dataset
@@ -436,6 +548,62 @@ var DatasetsApi = /** @class */ (function (_super) {
             });
         });
     };
+    /**
+     * Rerun data transforms (TODO).
+     * Rerun data transforms
+     */
+    DatasetsApi.prototype.rerunTransformRaw = function (requestParameters, initOverrides) {
+        return __awaiter(this, void 0, void 0, function () {
+            var queryParameters, headerParameters, token, tokenString, response;
+            return __generator(this, function (_a) {
+                switch (_a.label) {
+                    case 0:
+                        if (requestParameters.projectId === null || requestParameters.projectId === undefined) {
+                            throw new runtime.RequiredError('projectId', 'Required parameter requestParameters.projectId was null or undefined when calling rerunTransform.');
+                        }
+                        if (requestParameters.datasetId === null || requestParameters.datasetId === undefined) {
+                            throw new runtime.RequiredError('datasetId', 'Required parameter requestParameters.datasetId was null or undefined when calling rerunTransform.');
+                        }
+                        queryParameters = {};
+                        headerParameters = {};
+                        if (!(this.configuration && this.configuration.accessToken)) return [3 /*break*/, 2];
+                        token = this.configuration.accessToken;
+                        return [4 /*yield*/, token("accessToken", [])];
+                    case 1:
+                        tokenString = _a.sent();
+                        if (tokenString) {
+                            headerParameters["Authorization"] = "Bearer ".concat(tokenString);
+                        }
+                        _a.label = 2;
+                    case 2: return [4 /*yield*/, this.request({
+                            path: "/projects/{projectId}/datasets/{datasetId}/rerun-transform".replace("{".concat("projectId", "}"), encodeURIComponent(String(requestParameters.projectId))).replace("{".concat("datasetId", "}"), encodeURIComponent(String(requestParameters.datasetId))),
+                            method: 'PUT',
+                            headers: headerParameters,
+                            query: queryParameters,
+                        }, initOverrides)];
+                    case 3:
+                        response = _a.sent();
+                        return [2 /*return*/, new runtime.VoidApiResponse(response)];
+                }
+            });
+        });
+    };
+    /**
+     * Rerun data transforms (TODO).
+     * Rerun data transforms
+     */
+    DatasetsApi.prototype.rerunTransform = function (requestParameters, initOverrides) {
+        return __awaiter(this, void 0, void 0, function () {
+            return __generator(this, function (_a) {
+                switch (_a.label) {
+                    case 0: return [4 /*yield*/, this.rerunTransformRaw(requestParameters, initOverrides)];
+                    case 1:
+                        _a.sent();
+                        return [2 /*return*/];
+                }
+            });
+        });
+    };
     /**
      * Update info on a dataset
      * Update dataset

package/dist/apis/ExecutionApi.d.ts

@@ -10,7 +10,7 @@
  * Do not edit the class manually.
  */
 import * as runtime from '../runtime';
-import type { GetExecutionLogsResponse, StopExecutionResponse, Task } from '../models/index';
+import type { CreateResponse, GetExecutionLogsResponse, RunAnalysisRequest, StopExecutionResponse, Task } from '../models/index';
 export interface GetExecutionLogsRequest {
     datasetId: string;
     projectId: string;
@@ -31,6 +31,10 @@ export interface GetTasksForExecutionRequest {
     projectId: string;
     forceLive?: boolean;
 }
+export interface RunAnalysisOperationRequest {
+    projectId: string;
+    runAnalysisRequest: RunAnalysisRequest;
+}
 export interface StopAnalysisRequest {
     datasetId: string;
     projectId: string;
@@ -83,6 +87,16 @@ export declare class ExecutionApi extends runtime.BaseAPI {
      * Get execution tasks
      */
     getTasksForExecution(requestParameters: GetTasksForExecutionRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<Array<Task>>;
+    /**
+     * Run analysis
+     * Run analysis
+     */
+    runAnalysisRaw(requestParameters: RunAnalysisOperationRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<runtime.ApiResponse<CreateResponse>>;
+    /**
+     * Run analysis
+     * Run analysis
+     */
+    runAnalysis(requestParameters: RunAnalysisOperationRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<CreateResponse>;
     /**
      * Terminates all analysis jobs related to this execution
      * Stop execution

package/dist/apis/ExecutionApi.js

@@ -319,6 +319,66 @@ var ExecutionApi = /** @class */ (function (_super) {
             });
         });
     };
+    /**
+     * Run analysis
+     * Run analysis
+     */
+    ExecutionApi.prototype.runAnalysisRaw = function (requestParameters, initOverrides) {
+        return __awaiter(this, void 0, void 0, function () {
+            var queryParameters, headerParameters, token, tokenString, response;
+            return __generator(this, function (_a) {
+                switch (_a.label) {
+                    case 0:
+                        if (requestParameters.projectId === null || requestParameters.projectId === undefined) {
+                            throw new runtime.RequiredError('projectId', 'Required parameter requestParameters.projectId was null or undefined when calling runAnalysis.');
+                        }
+                        if (requestParameters.runAnalysisRequest === null || requestParameters.runAnalysisRequest === undefined) {
+                            throw new runtime.RequiredError('runAnalysisRequest', 'Required parameter requestParameters.runAnalysisRequest was null or undefined when calling runAnalysis.');
+                        }
+                        queryParameters = {};
+                        headerParameters = {};
+                        headerParameters['Content-Type'] = 'application/json';
+                        if (!(this.configuration && this.configuration.accessToken)) return [3 /*break*/, 2];
+                        token = this.configuration.accessToken;
+                        return [4 /*yield*/, token("accessToken", [])];
+                    case 1:
+                        tokenString = _a.sent();
+                        if (tokenString) {
+                            headerParameters["Authorization"] = "Bearer ".concat(tokenString);
+                        }
+                        _a.label = 2;
+                    case 2: return [4 /*yield*/, this.request({
+                            path: "/projects/{projectId}/execution".replace("{".concat("projectId", "}"), encodeURIComponent(String(requestParameters.projectId))),
+                            method: 'POST',
+                            headers: headerParameters,
+                            query: queryParameters,
+                            body: (0, index_1.RunAnalysisRequestToJSON)(requestParameters.runAnalysisRequest),
+                        }, initOverrides)];
+                    case 3:
+                        response = _a.sent();
+                        return [2 /*return*/, new runtime.JSONApiResponse(response, function (jsonValue) { return (0, index_1.CreateResponseFromJSON)(jsonValue); })];
+                }
+            });
+        });
+    };
+    /**
+     * Run analysis
+     * Run analysis
+     */
+    ExecutionApi.prototype.runAnalysis = function (requestParameters, initOverrides) {
+        return __awaiter(this, void 0, void 0, function () {
+            var response;
+            return __generator(this, function (_a) {
+                switch (_a.label) {
+                    case 0: return [4 /*yield*/, this.runAnalysisRaw(requestParameters, initOverrides)];
+                    case 1:
+                        response = _a.sent();
+                        return [4 /*yield*/, response.value()];
+                    case 2: return [2 /*return*/, _a.sent()];
+                }
+            });
+        });
+    };
     /**
      * Terminates all analysis jobs related to this execution
      * Stop execution

package/dist/models/DatasetAssetsManifest.d.ts

@@ -17,6 +17,12 @@ import type { DatasetViz } from './DatasetViz';
  * @interface DatasetAssetsManifest
  */
 export interface DatasetAssetsManifest {
+    /**
+     * Base URL for files
+     * @type {string}
+     * @memberof DatasetAssetsManifest
+     */
+    domain?: string;
     /**
      * List of files in the dataset, including metadata
      * @type {Array<DatasetFile>}

package/dist/models/DatasetAssetsManifest.js

@@ -34,6 +34,7 @@ function DatasetAssetsManifestFromJSONTyped(json, ignoreDiscriminator) {
         return json;
     }
     return {
+        'domain': !(0, runtime_1.exists)(json, 'domain') ? undefined : json['domain'],
         'files': !(0, runtime_1.exists)(json, 'files') ? undefined : (json['files'].map(DatasetFile_1.DatasetFileFromJSON)),
         'viz': !(0, runtime_1.exists)(json, 'viz') ? undefined : (json['viz'].map(DatasetViz_1.DatasetVizFromJSON)),
     };
@@ -47,6 +48,7 @@ function DatasetAssetsManifestToJSON(value) {
         return null;
     }
     return {
+        'domain': value.domain,
         'files': value.files === undefined ? undefined : (value.files.map(DatasetFile_1.DatasetFileToJSON)),
         'viz': value.viz === undefined ? undefined : (value.viz.map(DatasetViz_1.DatasetVizToJSON)),
     };

package/dist/models/RunAnalysisRequest.d.ts

@@ -0,0 +1,69 @@
+/**
+ * Cirro Data
+ * Cirro Data Platform service API
+ *
+ * The version of the OpenAPI document: latest
+ * Contact: support@cirro.bio
+ *
+ * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
+ * https://openapi-generator.tech
+ * Do not edit the class manually.
+ */
+/**
+ *
+ * @export
+ * @interface RunAnalysisRequest
+ */
+export interface RunAnalysisRequest {
+    /**
+     *
+     * @type {string}
+     * @memberof RunAnalysisRequest
+     */
+    name: string;
+    /**
+     *
+     * @type {string}
+     * @memberof RunAnalysisRequest
+     */
+    description: string;
+    /**
+     *
+     * @type {string}
+     * @memberof RunAnalysisRequest
+     */
+    processId: string;
+    /**
+     *
+     * @type {Array<string>}
+     * @memberof RunAnalysisRequest
+     */
+    sourceDatasetIds: Array<string>;
+    /**
+     *
+     * @type {string}
+     * @memberof RunAnalysisRequest
+     */
+    resumeDatasetId: string;
+    /**
+     *
+     * @type {{ [key: string]: any; }}
+     * @memberof RunAnalysisRequest
+     */
+    params: {
+        [key: string]: any;
+    };
+    /**
+     *
+     * @type {Array<string>}
+     * @memberof RunAnalysisRequest
+     */
+    notificationEmails: Array<string>;
+}
+/**
+ * Check if a given object implements the RunAnalysisRequest interface.
+ */
+export declare function instanceOfRunAnalysisRequest(value: object): boolean;
+export declare function RunAnalysisRequestFromJSON(json: any): RunAnalysisRequest;
+export declare function RunAnalysisRequestFromJSONTyped(json: any, ignoreDiscriminator: boolean): RunAnalysisRequest;
+export declare function RunAnalysisRequestToJSON(value?: RunAnalysisRequest | null): any;

package/dist/models/RunAnalysisRequest.js

@@ -0,0 +1,68 @@
+"use strict";
+/* tslint:disable */
+/* eslint-disable */
+/**
+ * Cirro Data
+ * Cirro Data Platform service API
+ *
+ * The version of the OpenAPI document: latest
+ * Contact: support@cirro.bio
+ *
+ * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
+ * https://openapi-generator.tech
+ * Do not edit the class manually.
+ */
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.RunAnalysisRequestToJSON = exports.RunAnalysisRequestFromJSONTyped = exports.RunAnalysisRequestFromJSON = exports.instanceOfRunAnalysisRequest = void 0;
+/**
+ * Check if a given object implements the RunAnalysisRequest interface.
+ */
+function instanceOfRunAnalysisRequest(value) {
+    var isInstance = true;
+    isInstance = isInstance && "name" in value;
+    isInstance = isInstance && "description" in value;
+    isInstance = isInstance && "processId" in value;
+    isInstance = isInstance && "sourceDatasetIds" in value;
+    isInstance = isInstance && "resumeDatasetId" in value;
+    isInstance = isInstance && "params" in value;
+    isInstance = isInstance && "notificationEmails" in value;
+    return isInstance;
+}
+exports.instanceOfRunAnalysisRequest = instanceOfRunAnalysisRequest;
+function RunAnalysisRequestFromJSON(json) {
+    return RunAnalysisRequestFromJSONTyped(json, false);
+}
+exports.RunAnalysisRequestFromJSON = RunAnalysisRequestFromJSON;
+function RunAnalysisRequestFromJSONTyped(json, ignoreDiscriminator) {
+    if ((json === undefined) || (json === null)) {
+        return json;
+    }
+    return {
+        'name': json['name'],
+        'description': json['description'],
+        'processId': json['processId'],
+        'sourceDatasetIds': json['sourceDatasetIds'],
+        'resumeDatasetId': json['resumeDatasetId'],
+        'params': json['params'],
+        'notificationEmails': json['notificationEmails'],
+    };
+}
+exports.RunAnalysisRequestFromJSONTyped = RunAnalysisRequestFromJSONTyped;
+function RunAnalysisRequestToJSON(value) {
+    if (value === undefined) {
+        return undefined;
+    }
+    if (value === null) {
+        return null;
+    }
+    return {
+        'name': value.name,
+        'description': value.description,
+        'processId': value.processId,
+        'sourceDatasetIds': value.sourceDatasetIds,
+        'resumeDatasetId': value.resumeDatasetId,
+        'params': value.params,
+        'notificationEmails': value.notificationEmails,
+    };
+}
+exports.RunAnalysisRequestToJSON = RunAnalysisRequestToJSON;

package/dist/models/index.d.ts

@@ -37,6 +37,7 @@ export * from './ProjectSettings';
 export * from './ProjectUser';
 export * from './Reference';
 export * from './ReferenceType';
+export * from './RunAnalysisRequest';
 export * from './Sample';
 export * from './SampleRequest';
 export * from './ServiceConnection';

package/dist/models/index.js

@@ -55,6 +55,7 @@ __exportStar(require("./ProjectSettings"), exports);
 __exportStar(require("./ProjectUser"), exports);
 __exportStar(require("./Reference"), exports);
 __exportStar(require("./ReferenceType"), exports);
+__exportStar(require("./RunAnalysisRequest"), exports);
 __exportStar(require("./Sample"), exports);
 __exportStar(require("./SampleRequest"), exports);
 __exportStar(require("./ServiceConnection"), exports);

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@cirrobio/api-client",
-  "version": "0.0.20-alpha",
+  "version": "0.0.22-alpha",
   "description": "API client for Cirro",
   "author": "CirroBio",
   "repository": {

package/src/apis/DatasetsApi.ts

@@ -69,11 +69,26 @@ export interface ImportPublicDatasetRequest {
     importDataRequest: ImportDataRequest;
 }
 
+export interface IngestSamplesRequest {
+    projectId: string;
+    datasetId: string;
+}
+
+export interface RegenerateManifestRequest {
+    projectId: string;
+    datasetId: string;
+}
+
 export interface RegisterDatasetRequest {
     projectId: string;
     uploadDatasetRequest: UploadDatasetRequest;
 }
 
+export interface RerunTransformRequest {
+    projectId: string;
+    datasetId: string;
+}
+
 export interface UpdateDatasetOperationRequest {
     projectId: string;
     datasetId: string;
@@ -316,6 +331,92 @@ export class DatasetsApi extends runtime.BaseAPI {
         return await response.value();
     }
 
+    /**
+     * Rerun sample ingest (TODO).
+     * Rerun sample ingest
+     */
+    async ingestSamplesRaw(requestParameters: IngestSamplesRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<runtime.ApiResponse<void>> {
+        if (requestParameters.projectId === null || requestParameters.projectId === undefined) {
+            throw new runtime.RequiredError('projectId','Required parameter requestParameters.projectId was null or undefined when calling ingestSamples.');
+        }
+
+        if (requestParameters.datasetId === null || requestParameters.datasetId === undefined) {
+            throw new runtime.RequiredError('datasetId','Required parameter requestParameters.datasetId was null or undefined when calling ingestSamples.');
+        }
+
+        const queryParameters: any = {};
+
+        const headerParameters: runtime.HTTPHeaders = {};
+
+        if (this.configuration && this.configuration.accessToken) {
+            const token = this.configuration.accessToken;
+            const tokenString = await token("accessToken", []);
+
+            if (tokenString) {
+                headerParameters["Authorization"] = `Bearer ${tokenString}`;
+            }
+        }
+        const response = await this.request({
+            path: `/projects/{projectId}/datasets/{datasetId}/ingest-samples`.replace(`{${"projectId"}}`, encodeURIComponent(String(requestParameters.projectId))).replace(`{${"datasetId"}}`, encodeURIComponent(String(requestParameters.datasetId))),
+            method: 'PUT',
+            headers: headerParameters,
+            query: queryParameters,
+        }, initOverrides);
+
+        return new runtime.VoidApiResponse(response);
+    }
+
+    /**
+     * Rerun sample ingest (TODO).
+     * Rerun sample ingest
+     */
+    async ingestSamples(requestParameters: IngestSamplesRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<void> {
+        await this.ingestSamplesRaw(requestParameters, initOverrides);
+    }
+
+    /**
+     * Regenerate dataset manifest (TODO).
+     * Regenerate dataset manifest
+     */
+    async regenerateManifestRaw(requestParameters: RegenerateManifestRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<runtime.ApiResponse<void>> {
+        if (requestParameters.projectId === null || requestParameters.projectId === undefined) {
+            throw new runtime.RequiredError('projectId','Required parameter requestParameters.projectId was null or undefined when calling regenerateManifest.');
+        }
+
+        if (requestParameters.datasetId === null || requestParameters.datasetId === undefined) {
+            throw new runtime.RequiredError('datasetId','Required parameter requestParameters.datasetId was null or undefined when calling regenerateManifest.');
+        }
+
+        const queryParameters: any = {};
+
+        const headerParameters: runtime.HTTPHeaders = {};
+
+        if (this.configuration && this.configuration.accessToken) {
+            const token = this.configuration.accessToken;
+            const tokenString = await token("accessToken", []);
+
+            if (tokenString) {
+                headerParameters["Authorization"] = `Bearer ${tokenString}`;
+            }
+        }
+        const response = await this.request({
+            path: `/projects/{projectId}/datasets/{datasetId}/regenerate-manifest`.replace(`{${"projectId"}}`, encodeURIComponent(String(requestParameters.projectId))).replace(`{${"datasetId"}}`, encodeURIComponent(String(requestParameters.datasetId))),
+            method: 'PUT',
+            headers: headerParameters,
+            query: queryParameters,
+        }, initOverrides);
+
+        return new runtime.VoidApiResponse(response);
+    }
+
+    /**
+     * Regenerate dataset manifest (TODO).
+     * Regenerate dataset manifest
+     */
+    async regenerateManifest(requestParameters: RegenerateManifestRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<void> {
+        await this.regenerateManifestRaw(requestParameters, initOverrides);
+    }
+
     /**
      * Registers a dataset in the system that you upload files into
      * Upload private dataset
@@ -363,6 +464,49 @@ export class DatasetsApi extends runtime.BaseAPI {
         return await response.value();
     }
 
+    /**
+     * Rerun data transforms (TODO).
+     * Rerun data transforms
+     */
+    async rerunTransformRaw(requestParameters: RerunTransformRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<runtime.ApiResponse<void>> {
+        if (requestParameters.projectId === null || requestParameters.projectId === undefined) {
+            throw new runtime.RequiredError('projectId','Required parameter requestParameters.projectId was null or undefined when calling rerunTransform.');
+        }
+
+        if (requestParameters.datasetId === null || requestParameters.datasetId === undefined) {
+            throw new runtime.RequiredError('datasetId','Required parameter requestParameters.datasetId was null or undefined when calling rerunTransform.');
+        }
+
+        const queryParameters: any = {};
+
+        const headerParameters: runtime.HTTPHeaders = {};
+
+        if (this.configuration && this.configuration.accessToken) {
+            const token = this.configuration.accessToken;
+            const tokenString = await token("accessToken", []);
+
+            if (tokenString) {
+                headerParameters["Authorization"] = `Bearer ${tokenString}`;
+            }
+        }
+        const response = await this.request({
+            path: `/projects/{projectId}/datasets/{datasetId}/rerun-transform`.replace(`{${"projectId"}}`, encodeURIComponent(String(requestParameters.projectId))).replace(`{${"datasetId"}}`, encodeURIComponent(String(requestParameters.datasetId))),
+            method: 'PUT',
+            headers: headerParameters,
+            query: queryParameters,
+        }, initOverrides);
+
+        return new runtime.VoidApiResponse(response);
+    }
+
+    /**
+     * Rerun data transforms (TODO).
+     * Rerun data transforms
+     */
+    async rerunTransform(requestParameters: RerunTransformRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<void> {
+        await this.rerunTransformRaw(requestParameters, initOverrides);
+    }
+
     /**
      * Update info on a dataset
      * Update dataset

package/src/apis/ExecutionApi.ts

@@ -15,13 +15,19 @@
 
 import * as runtime from '../runtime';
 import type {
+  CreateResponse,
   GetExecutionLogsResponse,
+  RunAnalysisRequest,
   StopExecutionResponse,
   Task,
 } from '../models/index';
 import {
+    CreateResponseFromJSON,
+    CreateResponseToJSON,
     GetExecutionLogsResponseFromJSON,
     GetExecutionLogsResponseToJSON,
+    RunAnalysisRequestFromJSON,
+    RunAnalysisRequestToJSON,
     StopExecutionResponseFromJSON,
     StopExecutionResponseToJSON,
     TaskFromJSON,
@@ -52,6 +58,11 @@ export interface GetTasksForExecutionRequest {
     forceLive?: boolean;
 }
 
+export interface RunAnalysisOperationRequest {
+    projectId: string;
+    runAnalysisRequest: RunAnalysisRequest;
+}
+
 export interface StopAnalysisRequest {
     datasetId: string;
     projectId: string;
@@ -254,6 +265,53 @@ export class ExecutionApi extends runtime.BaseAPI {
         return await response.value();
     }
 
+    /**
+     * Run analysis
+     * Run analysis
+     */
+    async runAnalysisRaw(requestParameters: RunAnalysisOperationRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<runtime.ApiResponse<CreateResponse>> {
+        if (requestParameters.projectId === null || requestParameters.projectId === undefined) {
+            throw new runtime.RequiredError('projectId','Required parameter requestParameters.projectId was null or undefined when calling runAnalysis.');
+        }
+
+        if (requestParameters.runAnalysisRequest === null || requestParameters.runAnalysisRequest === undefined) {
+            throw new runtime.RequiredError('runAnalysisRequest','Required parameter requestParameters.runAnalysisRequest was null or undefined when calling runAnalysis.');
+        }
+
+        const queryParameters: any = {};
+
+        const headerParameters: runtime.HTTPHeaders = {};
+
+        headerParameters['Content-Type'] = 'application/json';
+
+        if (this.configuration && this.configuration.accessToken) {
+            const token = this.configuration.accessToken;
+            const tokenString = await token("accessToken", []);
+
+            if (tokenString) {
+                headerParameters["Authorization"] = `Bearer ${tokenString}`;
+            }
+        }
+        const response = await this.request({
+            path: `/projects/{projectId}/execution`.replace(`{${"projectId"}}`, encodeURIComponent(String(requestParameters.projectId))),
+            method: 'POST',
+            headers: headerParameters,
+            query: queryParameters,
+            body: RunAnalysisRequestToJSON(requestParameters.runAnalysisRequest),
+        }, initOverrides);
+
+        return new runtime.JSONApiResponse(response, (jsonValue) => CreateResponseFromJSON(jsonValue));
+    }
+
+    /**
+     * Run analysis
+     * Run analysis
+     */
+    async runAnalysis(requestParameters: RunAnalysisOperationRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<CreateResponse> {
+        const response = await this.runAnalysisRaw(requestParameters, initOverrides);
+        return await response.value();
+    }
+
     /**
      * Terminates all analysis jobs related to this execution
      * Stop execution

package/src/models/DatasetAssetsManifest.ts

@@ -32,6 +32,12 @@ import {
  * @interface DatasetAssetsManifest
  */
 export interface DatasetAssetsManifest {
+    /**
+     * Base URL for files
+     * @type {string}
+     * @memberof DatasetAssetsManifest
+     */
+    domain?: string;
     /**
      * List of files in the dataset, including metadata
      * @type {Array<DatasetFile>}
@@ -65,6 +71,7 @@ export function DatasetAssetsManifestFromJSONTyped(json: any, ignoreDiscriminato
     }
     return {
         
+        'domain': !exists(json, 'domain') ? undefined : json['domain'],
         'files': !exists(json, 'files') ? undefined : ((json['files'] as Array<any>).map(DatasetFileFromJSON)),
         'viz': !exists(json, 'viz') ? undefined : ((json['viz'] as Array<any>).map(DatasetVizFromJSON)),
     };
@@ -79,6 +86,7 @@ export function DatasetAssetsManifestToJSON(value?: DatasetAssetsManifest | null
     }
     return {
         
+        'domain': value.domain,
         'files': value.files === undefined ? undefined : ((value.files as Array<any>).map(DatasetFileToJSON)),
         'viz': value.viz === undefined ? undefined : ((value.viz as Array<any>).map(DatasetVizToJSON)),
     };

package/src/models/RunAnalysisRequest.ts

@@ -0,0 +1,120 @@
+/* tslint:disable */
+/* eslint-disable */
+/**
+ * Cirro Data
+ * Cirro Data Platform service API
+ *
+ * The version of the OpenAPI document: latest
+ * Contact: support@cirro.bio
+ *
+ * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
+ * https://openapi-generator.tech
+ * Do not edit the class manually.
+ */
+
+import { exists, mapValues } from '../runtime';
+/**
+ * 
+ * @export
+ * @interface RunAnalysisRequest
+ */
+export interface RunAnalysisRequest {
+    /**
+     * 
+     * @type {string}
+     * @memberof RunAnalysisRequest
+     */
+    name: string;
+    /**
+     * 
+     * @type {string}
+     * @memberof RunAnalysisRequest
+     */
+    description: string;
+    /**
+     * 
+     * @type {string}
+     * @memberof RunAnalysisRequest
+     */
+    processId: string;
+    /**
+     * 
+     * @type {Array<string>}
+     * @memberof RunAnalysisRequest
+     */
+    sourceDatasetIds: Array<string>;
+    /**
+     * 
+     * @type {string}
+     * @memberof RunAnalysisRequest
+     */
+    resumeDatasetId: string;
+    /**
+     * 
+     * @type {{ [key: string]: any; }}
+     * @memberof RunAnalysisRequest
+     */
+    params: { [key: string]: any; };
+    /**
+     * 
+     * @type {Array<string>}
+     * @memberof RunAnalysisRequest
+     */
+    notificationEmails: Array<string>;
+}
+
+/**
+ * Check if a given object implements the RunAnalysisRequest interface.
+ */
+export function instanceOfRunAnalysisRequest(value: object): boolean {
+    let isInstance = true;
+    isInstance = isInstance && "name" in value;
+    isInstance = isInstance && "description" in value;
+    isInstance = isInstance && "processId" in value;
+    isInstance = isInstance && "sourceDatasetIds" in value;
+    isInstance = isInstance && "resumeDatasetId" in value;
+    isInstance = isInstance && "params" in value;
+    isInstance = isInstance && "notificationEmails" in value;
+
+    return isInstance;
+}
+
+export function RunAnalysisRequestFromJSON(json: any): RunAnalysisRequest {
+    return RunAnalysisRequestFromJSONTyped(json, false);
+}
+
+export function RunAnalysisRequestFromJSONTyped(json: any, ignoreDiscriminator: boolean): RunAnalysisRequest {
+    if ((json === undefined) || (json === null)) {
+        return json;
+    }
+    return {
+        
+        'name': json['name'],
+        'description': json['description'],
+        'processId': json['processId'],
+        'sourceDatasetIds': json['sourceDatasetIds'],
+        'resumeDatasetId': json['resumeDatasetId'],
+        'params': json['params'],
+        'notificationEmails': json['notificationEmails'],
+    };
+}
+
+export function RunAnalysisRequestToJSON(value?: RunAnalysisRequest | null): any {
+    if (value === undefined) {
+        return undefined;
+    }
+    if (value === null) {
+        return null;
+    }
+    return {
+        
+        'name': value.name,
+        'description': value.description,
+        'processId': value.processId,
+        'sourceDatasetIds': value.sourceDatasetIds,
+        'resumeDatasetId': value.resumeDatasetId,
+        'params': value.params,
+        'notificationEmails': value.notificationEmails,
+    };
+}
+

package/src/models/index.ts

@@ -39,6 +39,7 @@ export * from './ProjectSettings';
 export * from './ProjectUser';
 export * from './Reference';
 export * from './ReferenceType';
+export * from './RunAnalysisRequest';
 export * from './Sample';
 export * from './SampleRequest';
 export * from './ServiceConnection';