@cirrobio/api-client 0.0.1

package/src/models/Dataset.ts

@@ -0,0 +1,154 @@
+/* tslint:disable */
+/* eslint-disable */
+/**
+ * Cirro Data
+ * Cirro Data Platform service API
+ *
+ * The version of the OpenAPI document: latest
+ * Contact: support@cirro.bio
+ *
+ * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
+ * https://openapi-generator.tech
+ * Do not edit the class manually.
+ */
+
+import { exists, mapValues } from '../runtime';
+import type { Tag } from './Tag';
+import {
+    TagFromJSON,
+    TagFromJSONTyped,
+    TagToJSON,
+} from './Tag';
+
+/**
+ * 
+ * @export
+ * @interface Dataset
+ */
+export interface Dataset {
+    /**
+     * 
+     * @type {string}
+     * @memberof Dataset
+     */
+    id: string;
+    /**
+     * 
+     * @type {string}
+     * @memberof Dataset
+     */
+    name: string;
+    /**
+     * 
+     * @type {string}
+     * @memberof Dataset
+     */
+    desc: string;
+    /**
+     * 
+     * @type {string}
+     * @memberof Dataset
+     */
+    processId: string;
+    /**
+     * 
+     * @type {Array<string>}
+     * @memberof Dataset
+     */
+    sourceDatasets: Array<string>;
+    /**
+     * 
+     * @type {string}
+     * @memberof Dataset
+     */
+    status: string;
+    /**
+     * 
+     * @type {Array<Tag>}
+     * @memberof Dataset
+     */
+    tags: Array<Tag>;
+    /**
+     * 
+     * @type {string}
+     * @memberof Dataset
+     */
+    createdBy: string;
+    /**
+     * 
+     * @type {string}
+     * @memberof Dataset
+     */
+    createdAt: string;
+    /**
+     * 
+     * @type {string}
+     * @memberof Dataset
+     */
+    updatedAt: string;
+}
+
+/**
+ * Check if a given object implements the Dataset interface.
+ */
+export function instanceOfDataset(value: object): boolean {
+    let isInstance = true;
+    isInstance = isInstance && "id" in value;
+    isInstance = isInstance && "name" in value;
+    isInstance = isInstance && "desc" in value;
+    isInstance = isInstance && "processId" in value;
+    isInstance = isInstance && "sourceDatasets" in value;
+    isInstance = isInstance && "status" in value;
+    isInstance = isInstance && "tags" in value;
+    isInstance = isInstance && "createdBy" in value;
+    isInstance = isInstance && "createdAt" in value;
+    isInstance = isInstance && "updatedAt" in value;
+
+    return isInstance;
+}
+
+export function DatasetFromJSON(json: any): Dataset {
+    return DatasetFromJSONTyped(json, false);
+}
+
+export function DatasetFromJSONTyped(json: any, ignoreDiscriminator: boolean): Dataset {
+    if ((json === undefined) || (json === null)) {
+        return json;
+    }
+    return {
+        
+        'id': json['id'],
+        'name': json['name'],
+        'desc': json['desc'],
+        'processId': json['processId'],
+        'sourceDatasets': json['sourceDatasets'],
+        'status': json['status'],
+        'tags': ((json['tags'] as Array<any>).map(TagFromJSON)),
+        'createdBy': json['createdBy'],
+        'createdAt': json['createdAt'],
+        'updatedAt': json['updatedAt'],
+    };
+}
+
+export function DatasetToJSON(value?: Dataset | null): any {
+    if (value === undefined) {
+        return undefined;
+    }
+    if (value === null) {
+        return null;
+    }
+    return {
+        
+        'id': value.id,
+        'name': value.name,
+        'desc': value.desc,
+        'processId': value.processId,
+        'sourceDatasets': value.sourceDatasets,
+        'status': value.status,
+        'tags': ((value.tags as Array<any>).map(TagToJSON)),
+        'createdBy': value.createdBy,
+        'createdAt': value.createdAt,
+        'updatedAt': value.updatedAt,
+    };
+}
+

package/src/models/DatasetDetail.ts

@@ -0,0 +1,190 @@
+/* tslint:disable */
+/* eslint-disable */
+/**
+ * Cirro Data
+ * Cirro Data Platform service API
+ *
+ * The version of the OpenAPI document: latest
+ * Contact: support@cirro.bio
+ *
+ * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
+ * https://openapi-generator.tech
+ * Do not edit the class manually.
+ */
+
+import { exists, mapValues } from '../runtime';
+import type { Tag } from './Tag';
+import {
+    TagFromJSON,
+    TagFromJSONTyped,
+    TagToJSON,
+} from './Tag';
+
+/**
+ * 
+ * @export
+ * @interface DatasetDetail
+ */
+export interface DatasetDetail {
+    /**
+     * 
+     * @type {string}
+     * @memberof DatasetDetail
+     */
+    id: string;
+    /**
+     * 
+     * @type {string}
+     * @memberof DatasetDetail
+     */
+    name: string;
+    /**
+     * 
+     * @type {string}
+     * @memberof DatasetDetail
+     */
+    desc: string;
+    /**
+     * 
+     * @type {string}
+     * @memberof DatasetDetail
+     */
+    s3: string;
+    /**
+     * 
+     * @type {string}
+     * @memberof DatasetDetail
+     */
+    processId: string;
+    /**
+     * 
+     * @type {string}
+     * @memberof DatasetDetail
+     */
+    processName: string;
+    /**
+     * 
+     * @type {Array<string>}
+     * @memberof DatasetDetail
+     */
+    sourceDatasets: Array<string>;
+    /**
+     * 
+     * @type {string}
+     * @memberof DatasetDetail
+     */
+    status: string;
+    /**
+     * 
+     * @type {Array<Tag>}
+     * @memberof DatasetDetail
+     */
+    tags: Array<Tag>;
+    /**
+     * 
+     * @type {{ [key: string]: any; }}
+     * @memberof DatasetDetail
+     */
+    params: { [key: string]: any; };
+    /**
+     * 
+     * @type {{ [key: string]: any; }}
+     * @memberof DatasetDetail
+     */
+    info: { [key: string]: any; };
+    /**
+     * 
+     * @type {string}
+     * @memberof DatasetDetail
+     */
+    createdBy: string;
+    /**
+     * 
+     * @type {string}
+     * @memberof DatasetDetail
+     */
+    createdAt: string;
+    /**
+     * 
+     * @type {string}
+     * @memberof DatasetDetail
+     */
+    updatedAt: string;
+}
+
+/**
+ * Check if a given object implements the DatasetDetail interface.
+ */
+export function instanceOfDatasetDetail(value: object): boolean {
+    let isInstance = true;
+    isInstance = isInstance && "id" in value;
+    isInstance = isInstance && "name" in value;
+    isInstance = isInstance && "desc" in value;
+    isInstance = isInstance && "s3" in value;
+    isInstance = isInstance && "processId" in value;
+    isInstance = isInstance && "processName" in value;
+    isInstance = isInstance && "sourceDatasets" in value;
+    isInstance = isInstance && "status" in value;
+    isInstance = isInstance && "tags" in value;
+    isInstance = isInstance && "params" in value;
+    isInstance = isInstance && "info" in value;
+    isInstance = isInstance && "createdBy" in value;
+    isInstance = isInstance && "createdAt" in value;
+    isInstance = isInstance && "updatedAt" in value;
+
+    return isInstance;
+}
+
+export function DatasetDetailFromJSON(json: any): DatasetDetail {
+    return DatasetDetailFromJSONTyped(json, false);
+}
+
+export function DatasetDetailFromJSONTyped(json: any, ignoreDiscriminator: boolean): DatasetDetail {
+    if ((json === undefined) || (json === null)) {
+        return json;
+    }
+    return {
+        
+        'id': json['id'],
+        'name': json['name'],
+        'desc': json['desc'],
+        's3': json['s3'],
+        'processId': json['processId'],
+        'processName': json['processName'],
+        'sourceDatasets': json['sourceDatasets'],
+        'status': json['status'],
+        'tags': ((json['tags'] as Array<any>).map(TagFromJSON)),
+        'params': json['params'],
+        'info': json['info'],
+        'createdBy': json['createdBy'],
+        'createdAt': json['createdAt'],
+        'updatedAt': json['updatedAt'],
+    };
+}
+
+export function DatasetDetailToJSON(value?: DatasetDetail | null): any {
+    if (value === undefined) {
+        return undefined;
+    }
+    if (value === null) {
+        return null;
+    }
+    return {
+        
+        'id': value.id,
+        'name': value.name,
+        'desc': value.desc,
+        's3': value.s3,
+        'processId': value.processId,
+        'processName': value.processName,
+        'sourceDatasets': value.sourceDatasets,
+        'status': value.status,
+        'tags': ((value.tags as Array<any>).map(TagToJSON)),
+        'params': value.params,
+        'info': value.info,
+        'createdBy': value.createdBy,
+        'createdAt': value.createdAt,
+        'updatedAt': value.updatedAt,
+    };
+}
+

package/src/models/DatasetType.ts

@@ -0,0 +1,38 @@
+/* tslint:disable */
+/* eslint-disable */
+/**
+ * Cirro Data
+ * Cirro Data Platform service API
+ *
+ * The version of the OpenAPI document: latest
+ * Contact: support@cirro.bio
+ *
+ * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
+ * https://openapi-generator.tech
+ * Do not edit the class manually.
+ */
+
+
+/**
+ * 
+ * @export
+ */
+export const DatasetType = {
+    Upload: 'UPLOAD',
+    Public: 'PUBLIC'
+} as const;
+export type DatasetType = typeof DatasetType[keyof typeof DatasetType];
+
+
+export function DatasetTypeFromJSON(json: any): DatasetType {
+    return DatasetTypeFromJSONTyped(json, false);
+}
+
+export function DatasetTypeFromJSONTyped(json: any, ignoreDiscriminator: boolean): DatasetType {
+    return json as DatasetType;
+}
+
+export function DatasetTypeToJSON(value?: DatasetType | null): any {
+    return value as any;
+}
+

package/src/models/Executor.ts

@@ -0,0 +1,39 @@
+/* tslint:disable */
+/* eslint-disable */
+/**
+ * Cirro Data
+ * Cirro Data Platform service API
+ *
+ * The version of the OpenAPI document: latest
+ * Contact: support@cirro.bio
+ *
+ * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
+ * https://openapi-generator.tech
+ * Do not edit the class manually.
+ */
+
+
+/**
+ * Process executor
+ * @export
+ */
+export const Executor = {
+    Ingest: 'INGEST',
+    Nextflow: 'NEXTFLOW',
+    Cromwell: 'CROMWELL'
+} as const;
+export type Executor = typeof Executor[keyof typeof Executor];
+
+
+export function ExecutorFromJSON(json: any): Executor {
+    return ExecutorFromJSONTyped(json, false);
+}
+
+export function ExecutorFromJSONTyped(json: any, ignoreDiscriminator: boolean): Executor {
+    return json as Executor;
+}
+
+export function ExecutorToJSON(value?: Executor | null): any {
+    return value as any;
+}
+

package/src/models/FormSchema.ts

@@ -0,0 +1,73 @@
+/* tslint:disable */
+/* eslint-disable */
+/**
+ * Cirro Data
+ * Cirro Data Platform service API
+ *
+ * The version of the OpenAPI document: latest
+ * Contact: support@cirro.bio
+ *
+ * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
+ * https://openapi-generator.tech
+ * Do not edit the class manually.
+ */
+
+import { exists, mapValues } from '../runtime';
+/**
+ * 
+ * @export
+ * @interface FormSchema
+ */
+export interface FormSchema {
+    /**
+     * JSONSchema representation of the pipeline parameters
+     * @type {{ [key: string]: any; }}
+     * @memberof FormSchema
+     */
+    form?: { [key: string]: any; };
+    /**
+     * Describes how the form should be rendered, see rjsf
+     * @type {{ [key: string]: any; }}
+     * @memberof FormSchema
+     */
+    ui?: { [key: string]: any; };
+}
+
+/**
+ * Check if a given object implements the FormSchema interface.
+ */
+export function instanceOfFormSchema(value: object): boolean {
+    let isInstance = true;
+
+    return isInstance;
+}
+
+export function FormSchemaFromJSON(json: any): FormSchema {
+    return FormSchemaFromJSONTyped(json, false);
+}
+
+export function FormSchemaFromJSONTyped(json: any, ignoreDiscriminator: boolean): FormSchema {
+    if ((json === undefined) || (json === null)) {
+        return json;
+    }
+    return {
+        
+        'form': !exists(json, 'form') ? undefined : json['form'],
+        'ui': !exists(json, 'ui') ? undefined : json['ui'],
+    };
+}
+
+export function FormSchemaToJSON(value?: FormSchema | null): any {
+    if (value === undefined) {
+        return undefined;
+    }
+    if (value === null) {
+        return null;
+    }
+    return {
+        
+        'form': value.form,
+        'ui': value.ui,
+    };
+}
+

package/src/models/GetExecutionLogsResponse.ts

@@ -0,0 +1,73 @@
+/* tslint:disable */
+/* eslint-disable */
+/**
+ * Cirro Data
+ * Cirro Data Platform service API
+ *
+ * The version of the OpenAPI document: latest
+ * Contact: support@cirro.bio
+ *
+ * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
+ * https://openapi-generator.tech
+ * Do not edit the class manually.
+ */
+
+import { exists, mapValues } from '../runtime';
+import type { LogEntry } from './LogEntry';
+import {
+    LogEntryFromJSON,
+    LogEntryFromJSONTyped,
+    LogEntryToJSON,
+} from './LogEntry';
+
+/**
+ * 
+ * @export
+ * @interface GetExecutionLogsResponse
+ */
+export interface GetExecutionLogsResponse {
+    /**
+     * 
+     * @type {Array<LogEntry>}
+     * @memberof GetExecutionLogsResponse
+     */
+    events: Array<LogEntry>;
+}
+
+/**
+ * Check if a given object implements the GetExecutionLogsResponse interface.
+ */
+export function instanceOfGetExecutionLogsResponse(value: object): boolean {
+    let isInstance = true;
+    isInstance = isInstance && "events" in value;
+
+    return isInstance;
+}
+
+export function GetExecutionLogsResponseFromJSON(json: any): GetExecutionLogsResponse {
+    return GetExecutionLogsResponseFromJSONTyped(json, false);
+}
+
+export function GetExecutionLogsResponseFromJSONTyped(json: any, ignoreDiscriminator: boolean): GetExecutionLogsResponse {
+    if ((json === undefined) || (json === null)) {
+        return json;
+    }
+    return {
+        
+        'events': ((json['events'] as Array<any>).map(LogEntryFromJSON)),
+    };
+}
+
+export function GetExecutionLogsResponseToJSON(value?: GetExecutionLogsResponse | null): any {
+    if (value === undefined) {
+        return undefined;
+    }
+    if (value === null) {
+        return null;
+    }
+    return {
+        
+        'events': ((value.events as Array<any>).map(LogEntryToJSON)),
+    };
+}
+

package/src/models/LogEntry.ts

@@ -0,0 +1,74 @@
+/* tslint:disable */
+/* eslint-disable */
+/**
+ * Cirro Data
+ * Cirro Data Platform service API
+ *
+ * The version of the OpenAPI document: latest
+ * Contact: support@cirro.bio
+ *
+ * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
+ * https://openapi-generator.tech
+ * Do not edit the class manually.
+ */
+
+import { exists, mapValues } from '../runtime';
+/**
+ * 
+ * @export
+ * @interface LogEntry
+ */
+export interface LogEntry {
+    /**
+     * UNIX timestamp in milliseconds, might be blank if we don't have this info
+     * @type {number}
+     * @memberof LogEntry
+     */
+    timestamp?: number;
+    /**
+     * 
+     * @type {string}
+     * @memberof LogEntry
+     */
+    message: string;
+}
+
+/**
+ * Check if a given object implements the LogEntry interface.
+ */
+export function instanceOfLogEntry(value: object): boolean {
+    let isInstance = true;
+    isInstance = isInstance && "message" in value;
+
+    return isInstance;
+}
+
+export function LogEntryFromJSON(json: any): LogEntry {
+    return LogEntryFromJSONTyped(json, false);
+}
+
+export function LogEntryFromJSONTyped(json: any, ignoreDiscriminator: boolean): LogEntry {
+    if ((json === undefined) || (json === null)) {
+        return json;
+    }
+    return {
+        
+        'timestamp': !exists(json, 'timestamp') ? undefined : json['timestamp'],
+        'message': json['message'],
+    };
+}
+
+export function LogEntryToJSON(value?: LogEntry | null): any {
+    if (value === undefined) {
+        return undefined;
+    }
+    if (value === null) {
+        return null;
+    }
+    return {
+        
+        'timestamp': value.timestamp,
+        'message': value.message,
+    };
+}
+