@ceyhunbilir/synaphex 1.0.0

package/dist/lib/memory.js

@@ -0,0 +1,40 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.getMemoryIndex = exports.loadMemory = void 0;
+const fs_extra_1 = __importDefault(require("fs-extra"));
+const path_1 = __importDefault(require("path"));
+const paths_1 = require("./paths");
+async function loadMemory(projectName) {
+    const memoryDir = paths_1.Paths.memory(projectName);
+    if (!await fs_extra_1.default.pathExists(memoryDir)) {
+        return '# No project memory found\n';
+    }
+    // Read all .md files in memory directory
+    const files = await fs_extra_1.default.readdir(memoryDir);
+    const mdFiles = files
+        .filter((f) => f.endsWith('.md') && f !== 'MEMORY.md')
+        .sort();
+    if (mdFiles.length === 0) {
+        return '# No memory entries found\n';
+    }
+    let combinedContent = '# Project Memory\n\n';
+    for (const file of mdFiles) {
+        const filePath = path_1.default.join(memoryDir, file);
+        const content = await fs_extra_1.default.readFile(filePath, 'utf-8');
+        combinedContent += `## ${file}\n\n${content}\n\n---\n\n`;
+    }
+    return combinedContent;
+}
+exports.loadMemory = loadMemory;
+async function getMemoryIndex(projectName) {
+    const indexPath = paths_1.Paths.memoryIndex(projectName);
+    if (!await fs_extra_1.default.pathExists(indexPath)) {
+        return '# Memory Index Not Found\n';
+    }
+    return fs_extra_1.default.readFile(indexPath, 'utf-8');
+}
+exports.getMemoryIndex = getMemoryIndex;
+//# sourceMappingURL=memory.js.map

package/dist/lib/memory.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"memory.js","sourceRoot":"","sources":["../../src/lib/memory.ts"],"names":[],"mappings":";;;;;;AAAA,wDAA0B;AAC1B,gDAAwB;AACxB,mCAAgC;AAEzB,KAAK,UAAU,UAAU,CAAC,WAAmB;IAClD,MAAM,SAAS,GAAG,aAAK,CAAC,MAAM,CAAC,WAAW,CAAC,CAAC;IAE5C,IAAI,CAAC,MAAM,kBAAE,CAAC,UAAU,CAAC,SAAS,CAAC,EAAE;QACnC,OAAO,6BAA6B,CAAC;KACtC;IAED,yCAAyC;IACzC,MAAM,KAAK,GAAG,MAAM,kBAAE,CAAC,OAAO,CAAC,SAAS,CAAC,CAAC;IAC1C,MAAM,OAAO,GAAG,KAAK;SAClB,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,QAAQ,CAAC,KAAK,CAAC,IAAI,CAAC,KAAK,WAAW,CAAC;SACrD,IAAI,EAAE,CAAC;IAEV,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE;QACxB,OAAO,6BAA6B,CAAC;KACtC;IAED,IAAI,eAAe,GAAG,sBAAsB,CAAC;IAE7C,KAAK,MAAM,IAAI,IAAI,OAAO,EAAE;QAC1B,MAAM,QAAQ,GAAG,cAAI,CAAC,IAAI,CAAC,SAAS,EAAE,IAAI,CAAC,CAAC;QAC5C,MAAM,OAAO,GAAG,MAAM,kBAAE,CAAC,QAAQ,CAAC,QAAQ,EAAE,OAAO,CAAC,CAAC;QACrD,eAAe,IAAI,MAAM,IAAI,OAAO,OAAO,aAAa,CAAC;KAC1D;IAED,OAAO,eAAe,CAAC;AACzB,CAAC;AA1BD,gCA0BC;AAEM,KAAK,UAAU,cAAc,CAAC,WAAmB;IACtD,MAAM,SAAS,GAAG,aAAK,CAAC,WAAW,CAAC,WAAW,CAAC,CAAC;IAEjD,IAAI,CAAC,MAAM,kBAAE,CAAC,UAAU,CAAC,SAAS,CAAC,EAAE;QACnC,OAAO,4BAA4B,CAAC;KACrC;IAED,OAAO,kBAAE,CAAC,QAAQ,CAAC,SAAS,EAAE,OAAO,CAAC,CAAC;AACzC,CAAC;AARD,wCAQC"}

package/dist/lib/output.d.ts

@@ -0,0 +1,4 @@
+import { PipelineOutput } from '../types';
+export declare function saveOutput(projectName: string, output: PipelineOutput): Promise<string>;
+export declare function listOutputs(projectName: string): Promise<string[]>;
+//# sourceMappingURL=output.d.ts.map

package/dist/lib/output.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"output.d.ts","sourceRoot":"","sources":["../../src/lib/output.ts"],"names":[],"mappings":"AAIA,OAAO,EAAE,cAAc,EAAE,MAAM,UAAU,CAAC;AAmD1C,wBAAsB,UAAU,CAAC,WAAW,EAAE,MAAM,EAAE,MAAM,EAAE,cAAc,GAAG,OAAO,CAAC,MAAM,CAAC,CAmB7F;AAED,wBAAsB,WAAW,CAAC,WAAW,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,EAAE,CAAC,CAYxE"}

package/dist/lib/output.js

@@ -0,0 +1,78 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.listOutputs = exports.saveOutput = void 0;
+const fs_extra_1 = __importDefault(require("fs-extra"));
+const path_1 = __importDefault(require("path"));
+const crypto_1 = require("crypto");
+const paths_1 = require("./paths");
+function generateRunId() {
+    const now = new Date();
+    const timestamp = now
+        .toISOString()
+        .replace(/[-:]/g, '')
+        .replace(/\.\d{3}/, '');
+    const randomPart = (0, crypto_1.randomBytes)(4).toString('hex');
+    return `${timestamp.slice(0, 15)}_${randomPart}`;
+}
+function formatMarkdownOutput(output) {
+    const { command, task, skip_researcher, timestamp, stages } = output;
+    let markdown = `# Synaphex ${command.toUpperCase()} Pipeline Output
+
+**Run ID**: ${output.run_id}
+**Timestamp**: ${timestamp}
+**Task**: ${task}
+**Skip Researcher**: ${skip_researcher ? 'Yes' : 'No'}
+
+---
+
+`;
+    if (stages.examiner) {
+        markdown += `## Stage 1: Examiner\n\n${stages.examiner}\n\n---\n\n`;
+    }
+    if (stages.researcher && !skip_researcher) {
+        markdown += `## Stage 2: Researcher\n\n${stages.researcher}\n\n---\n\n`;
+    }
+    if (stages.coder) {
+        markdown += `## Stage ${skip_researcher ? '2' : '3'}: Coder\n\n${stages.coder}\n\n---\n\n`;
+    }
+    if (stages.questioner) {
+        markdown += `## Stage ${skip_researcher ? '3' : '4'}: Questioner\n\n${stages.questioner}\n\n---\n\n`;
+    }
+    if (stages.reviewer) {
+        markdown += `## Stage ${skip_researcher ? '4' : '5'}: Reviewer\n\n${stages.reviewer}\n\n---\n\n`;
+    }
+    markdown += `Generated by Synaphex on ${new Date().toLocaleString()}`;
+    return markdown;
+}
+async function saveOutput(projectName, output) {
+    const outputsDir = paths_1.Paths.outputs(projectName);
+    await fs_extra_1.default.ensureDir(outputsDir);
+    const runId = generateRunId();
+    const outputWithId = { ...output, run_id: runId };
+    // Save JSON
+    const jsonPath = path_1.default.join(outputsDir, `run_${runId}.json`);
+    await fs_extra_1.default.writeJSON(jsonPath, outputWithId, { spaces: 2 });
+    // Save Markdown
+    const mdContent = formatMarkdownOutput(outputWithId);
+    const mdPath = path_1.default.join(outputsDir, `run_${runId}.md`);
+    await fs_extra_1.default.writeFile(mdPath, mdContent, 'utf-8');
+    console.log(`✓ Output saved: ${jsonPath}`);
+    return runId;
+}
+exports.saveOutput = saveOutput;
+async function listOutputs(projectName) {
+    const outputsDir = paths_1.Paths.outputs(projectName);
+    if (!await fs_extra_1.default.pathExists(outputsDir)) {
+        return [];
+    }
+    const files = await fs_extra_1.default.readdir(outputsDir);
+    return files
+        .filter((f) => f.endsWith('.json'))
+        .sort()
+        .reverse();
+}
+exports.listOutputs = listOutputs;
+//# sourceMappingURL=output.js.map

package/dist/lib/output.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"output.js","sourceRoot":"","sources":["../../src/lib/output.ts"],"names":[],"mappings":";;;;;;AAAA,wDAA0B;AAC1B,gDAAwB;AACxB,mCAAqC;AACrC,mCAAgC;AAGhC,SAAS,aAAa;IACpB,MAAM,GAAG,GAAG,IAAI,IAAI,EAAE,CAAC;IACvB,MAAM,SAAS,GAAG,GAAG;SAClB,WAAW,EAAE;SACb,OAAO,CAAC,OAAO,EAAE,EAAE,CAAC;SACpB,OAAO,CAAC,SAAS,EAAE,EAAE,CAAC,CAAC;IAC1B,MAAM,UAAU,GAAG,IAAA,oBAAW,EAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC;IAClD,OAAO,GAAG,SAAS,CAAC,KAAK,CAAC,CAAC,EAAE,EAAE,CAAC,IAAI,UAAU,EAAE,CAAC;AACnD,CAAC;AAED,SAAS,oBAAoB,CAAC,MAAsB;IAClD,MAAM,EAAE,OAAO,EAAE,IAAI,EAAE,eAAe,EAAE,SAAS,EAAE,MAAM,EAAE,GAAG,MAAM,CAAC;IAErE,IAAI,QAAQ,GAAG,cAAc,OAAO,CAAC,WAAW,EAAE;;cAEtC,MAAM,CAAC,MAAM;iBACV,SAAS;YACd,IAAI;uBACO,eAAe,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,IAAI;;;;CAIpD,CAAC;IAEA,IAAI,MAAM,CAAC,QAAQ,EAAE;QACnB,QAAQ,IAAI,2BAA2B,MAAM,CAAC,QAAQ,aAAa,CAAC;KACrE;IAED,IAAI,MAAM,CAAC,UAAU,IAAI,CAAC,eAAe,EAAE;QACzC,QAAQ,IAAI,6BAA6B,MAAM,CAAC,UAAU,aAAa,CAAC;KACzE;IAED,IAAI,MAAM,CAAC,KAAK,EAAE;QAChB,QAAQ,IAAI,YAAY,eAAe,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,cAAc,MAAM,CAAC,KAAK,aAAa,CAAC;KAC5F;IAED,IAAI,MAAM,CAAC,UAAU,EAAE;QACrB,QAAQ,IAAI,YAAY,eAAe,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,mBAAmB,MAAM,CAAC,UAAU,aAAa,CAAC;KACtG;IAED,IAAI,MAAM,CAAC,QAAQ,EAAE;QACnB,QAAQ,IAAI,YAAY,eAAe,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,iBAAiB,MAAM,CAAC,QAAQ,aAAa,CAAC;KAClG;IAED,QAAQ,IAAI,4BAA4B,IAAI,IAAI,EAAE,CAAC,cAAc,EAAE,EAAE,CAAC;IAEtE,OAAO,QAAQ,CAAC;AAClB,CAAC;AAEM,KAAK,UAAU,UAAU,CAAC,WAAmB,EAAE,MAAsB;IAC1E,MAAM,UAAU,GAAG,aAAK,CAAC,OAAO,CAAC,WAAW,CAAC,CAAC;IAC9C,MAAM,kBAAE,CAAC,SAAS,CAAC,UAAU,CAAC,CAAC;IAE/B,MAAM,KAAK,GAAG,aAAa,EAAE,CAAC;IAC9B,MAAM,YAAY,GAAG,EAAE,GAAG,MAAM,EAAE,MAAM,EAAE,KAAK,EAAE,CAAC;IAElD,YAAY;IACZ,MAAM,QAAQ,GAAG,cAAI,CAAC,IAAI,CAAC,UAAU,EAAE,OAAO,KAAK,OAAO,CAAC,CAAC;IAC5D,MAAM,kBAAE,CAAC,SAAS,CAAC,QAAQ,EAAE,YAAY,EAAE,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC;IAE1D,gBAAgB;IAChB,MAAM,SAAS,GAAG,oBAAoB,CAAC,YAAY,CAAC,CAAC;IACrD,MAAM,MAAM,GAAG,cAAI,CAAC,IAAI,CAAC,UAAU,EAAE,OAAO,KAAK,KAAK,CAAC,CAAC;IACxD,MAAM,kBAAE,CAAC,SAAS,CAAC,MAAM,EAAE,SAAS,EAAE,OAAO,CAAC,CAAC;IAE/C,OAAO,CAAC,GAAG,CAAC,mBAAmB,QAAQ,EAAE,CAAC,CAAC;IAE3C,OAAO,KAAK,CAAC;AACf,CAAC;AAnBD,gCAmBC;AAEM,KAAK,UAAU,WAAW,CAAC,WAAmB;IACnD,MAAM,UAAU,GAAG,aAAK,CAAC,OAAO,CAAC,WAAW,CAAC,CAAC;IAE9C,IAAI,CAAC,MAAM,kBAAE,CAAC,UAAU,CAAC,UAAU,CAAC,EAAE;QACpC,OAAO,EAAE,CAAC;KACX;IAED,MAAM,KAAK,GAAG,MAAM,kBAAE,CAAC,OAAO,CAAC,UAAU,CAAC,CAAC;IAC3C,OAAO,KAAK;SACT,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,QAAQ,CAAC,OAAO,CAAC,CAAC;SAClC,IAAI,EAAE;SACN,OAAO,EAAE,CAAC;AACf,CAAC;AAZD,kCAYC"}

package/dist/lib/paths.d.ts

@@ -0,0 +1,11 @@
+export declare const Paths: {
+    claudeHome: string;
+    commandsDir: string;
+    projectsDir: string;
+    project: (name: string) => string;
+    memory: (name: string) => string;
+    memoryIndex: (name: string) => string;
+    config: (name: string) => string;
+    outputs: (name: string) => string;
+};
+//# sourceMappingURL=paths.d.ts.map

package/dist/lib/paths.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"paths.d.ts","sourceRoot":"","sources":["../../src/lib/paths.ts"],"names":[],"mappings":"AAMA,eAAO,MAAM,KAAK;;;;oBAKA,MAAM,KAAG,MAAM;mBAChB,MAAM,KAAG,MAAM;wBACV,MAAM,KAAG,MAAM;mBACpB,MAAM,KAAG,MAAM;oBACd,MAAM,KAAG,MAAM;CAChC,CAAC"}

package/dist/lib/paths.js

@@ -0,0 +1,21 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.Paths = void 0;
+const os_1 = __importDefault(require("os"));
+const path_1 = __importDefault(require("path"));
+const CLAUDE_HOME = path_1.default.join(os_1.default.homedir(), '.claude');
+const PROJECTS_DIR = path_1.default.join(CLAUDE_HOME, 'projects');
+exports.Paths = {
+    claudeHome: CLAUDE_HOME,
+    commandsDir: path_1.default.join(CLAUDE_HOME, 'commands', 'synaphex'),
+    projectsDir: PROJECTS_DIR,
+    project: (name) => path_1.default.join(PROJECTS_DIR, name),
+    memory: (name) => path_1.default.join(PROJECTS_DIR, name, 'memory'),
+    memoryIndex: (name) => path_1.default.join(PROJECTS_DIR, name, 'memory', 'MEMORY.md'),
+    config: (name) => path_1.default.join(PROJECTS_DIR, name, 'config.md'),
+    outputs: (name) => path_1.default.join(PROJECTS_DIR, name, 'outputs'),
+};
+//# sourceMappingURL=paths.js.map

package/dist/lib/paths.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"paths.js","sourceRoot":"","sources":["../../src/lib/paths.ts"],"names":[],"mappings":";;;;;;AAAA,4CAAoB;AACpB,gDAAwB;AAExB,MAAM,WAAW,GAAG,cAAI,CAAC,IAAI,CAAC,YAAE,CAAC,OAAO,EAAE,EAAE,SAAS,CAAC,CAAC;AACvD,MAAM,YAAY,GAAG,cAAI,CAAC,IAAI,CAAC,WAAW,EAAE,UAAU,CAAC,CAAC;AAE3C,QAAA,KAAK,GAAG;IACnB,UAAU,EAAE,WAAW;IACvB,WAAW,EAAE,cAAI,CAAC,IAAI,CAAC,WAAW,EAAE,UAAU,EAAE,UAAU,CAAC;IAC3D,WAAW,EAAE,YAAY;IAEzB,OAAO,EAAE,CAAC,IAAY,EAAU,EAAE,CAAC,cAAI,CAAC,IAAI,CAAC,YAAY,EAAE,IAAI,CAAC;IAChE,MAAM,EAAE,CAAC,IAAY,EAAU,EAAE,CAAC,cAAI,CAAC,IAAI,CAAC,YAAY,EAAE,IAAI,EAAE,QAAQ,CAAC;IACzE,WAAW,EAAE,CAAC,IAAY,EAAU,EAAE,CAAC,cAAI,CAAC,IAAI,CAAC,YAAY,EAAE,IAAI,EAAE,QAAQ,EAAE,WAAW,CAAC;IAC3F,MAAM,EAAE,CAAC,IAAY,EAAU,EAAE,CAAC,cAAI,CAAC,IAAI,CAAC,YAAY,EAAE,IAAI,EAAE,WAAW,CAAC;IAC5E,OAAO,EAAE,CAAC,IAAY,EAAU,EAAE,CAAC,cAAI,CAAC,IAAI,CAAC,YAAY,EAAE,IAAI,EAAE,SAAS,CAAC;CAC5E,CAAC"}

package/dist/lib/project.d.ts

@@ -0,0 +1,2 @@
+export declare function initializeProject(projectName: string): Promise<void>;
+//# sourceMappingURL=project.d.ts.map

package/dist/lib/project.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"project.d.ts","sourceRoot":"","sources":["../../src/lib/project.ts"],"names":[],"mappings":"AAIA,wBAAsB,iBAAiB,CAAC,WAAW,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CAyG1E"}

package/dist/lib/project.js

@@ -0,0 +1,109 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.initializeProject = void 0;
+const fs_extra_1 = __importDefault(require("fs-extra"));
+const path_1 = __importDefault(require("path"));
+const paths_1 = require("./paths");
+async function initializeProject(projectName) {
+    const projectPath = paths_1.Paths.project(projectName);
+    const memoryPath = paths_1.Paths.memory(projectName);
+    const outputsPath = paths_1.Paths.outputs(projectName);
+    const configPath = paths_1.Paths.config(projectName);
+    const memoryIndexPath = paths_1.Paths.memoryIndex(projectName);
+    // Create directories
+    await fs_extra_1.default.ensureDir(memoryPath);
+    await fs_extra_1.default.ensureDir(outputsPath);
+    // Create config.md with YAML front-matter
+    const now = new Date().toISOString();
+    const configContent = `---
+project: ${projectName}
+created_at: ${now}
+agents:
+  examiner:
+    provider: claude
+    model: claude-opus-4-5
+    auth_mode: api_key
+    focus: ""
+    depth: standard
+    custom_instructions: ""
+  researcher:
+    provider: claude
+    model: claude-opus-4-5
+    auth_mode: api_key
+    focus: ""
+    depth: standard
+    custom_instructions: ""
+  coder:
+    provider: claude
+    model: claude-opus-4-5
+    auth_mode: api_key
+    focus: ""
+    depth: standard
+    custom_instructions: ""
+  questioner:
+    provider: claude
+    model: claude-opus-4-5
+    auth_mode: api_key
+    focus: ""
+    depth: standard
+    custom_instructions: ""
+  reviewer:
+    provider: claude
+    model: claude-opus-4-5
+    auth_mode: api_key
+    focus: ""
+    depth: standard
+    custom_instructions: ""
+---
+
+# Project Configuration
+
+Each agent has its own independent LLM configuration. Edit the agents section above to customize provider, model, focus, depth, and instructions per agent.
+
+## Supported Providers
+
+- **claude** — Anthropic Claude (auth modes: api_key with ANTHROPIC_API_KEY, cli with claude CLI, vscode_extension with Claude Code)
+- **gemini** — Google Gemini (auth mode: api_key with GEMINI_API_KEY)
+- **copilot** — GitHub Copilot (auth mode: cli with gh CLI)
+
+Created: ${now}
+`;
+    await fs_extra_1.default.writeFile(configPath, configContent, 'utf-8');
+    // Create memory/MEMORY.md index
+    const memoryIndexContent = `# Project Memory Index: ${projectName}
+
+Add memory entries below as the project evolves.
+
+## Entries
+
+- [Overview](overview.md) — project overview and context
+`;
+    await fs_extra_1.default.writeFile(memoryIndexPath, memoryIndexContent, 'utf-8');
+    // Create memory/overview.md
+    const overviewContent = `---
+name: Project Overview
+description: Initial project overview
+type: project
+---
+
+# ${projectName}
+
+Project initialized at ${now}.
+
+## Quick Links
+
+- **Config**: ../config.md
+- **Outputs**: ../outputs/ (pipeline run results)
+`;
+    const overviewPath = path_1.default.join(memoryPath, 'overview.md');
+    await fs_extra_1.default.writeFile(overviewPath, overviewContent, 'utf-8');
+    console.log(`✓ Project initialized: ${projectPath}`);
+    console.log(`  - Config: ${configPath}`);
+    console.log(`  - Memory: ${memoryPath}`);
+    console.log(`  - Outputs: ${outputsPath}`);
+}
+exports.initializeProject = initializeProject;
+//# sourceMappingURL=project.js.map

package/dist/lib/project.js.map

@@ -0,0 +1 @@
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package/dist/lib/settings.d.ts

@@ -0,0 +1,2 @@
+export declare function runSettingsCLI(projectName: string): Promise<void>;
+//# sourceMappingURL=settings.d.ts.map

package/dist/lib/settings.d.ts.map

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+{"version":3,"file":"settings.d.ts","sourceRoot":"","sources":["../../src/lib/settings.ts"],"names":[],"mappings":"AAwfA,wBAAsB,cAAc,CAAC,WAAW,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CA6EvE"}