@cesarandreslopez/occ 0.10.0 → 0.12.0

package/README.md

@@ -24,9 +24,9 @@ OCC started as a way to make office documents visible in the same workflows that
 - extract structured table content from documents (`occ table inspect`)
 - analyze workspaces for combined code, document, and structure metrics (`occ workspace analyze`) and cross-document references (`occ workspace documents`)
 - quickly describe whether a directory is a code, office, documentation, data, or mixed project (`occ describe`, `occ workspace describe`)
-- summarize code metrics through `scc`
+- summarize code metrics and file-level complexity through `scc`
 - explore JavaScript, TypeScript, Vue Single-File Components, Python, Go, Rust, Java, C/C++, Kotlin, and other tree-sitter-backed repositories with symbol search, exact `nodeId` source reads, syntax checks, call analysis, dependency inspection, and inheritance queries (`occ code`)
-- track git changes, diffs, commit history, and churn — and map a diff to the code symbols it touches (`occ git`, `occ code diff`, `occ code history`)
+- track git changes, diffs, commit history, churn, and file-level co-change — and map a diff to the code symbols it touches (`occ git`, `occ code diff`, `occ code history`)
 
 ## Agent Skills
 
@@ -68,11 +68,12 @@ After install the skill lands at `<skills-dir>/occ/SKILL.md` and your agent surf
 - **Spreadsheet inspection via `occ sheet inspect`** — workbook properties, hidden sheets, names, formulas, links, comments, schema preview, and token estimates for XLSX
 - **Presentation inspection via `occ slide inspect`** — metadata, risk flags, per-slide inventory, and content preview for PPTX and ODP
 - **Table extraction via `occ table inspect`** — structured table content from DOCX, XLSX, PPTX, ODT, and ODP with auto-detected headers, sample row limits, and merged cell support
-- **Code metrics via scc** — auto-detects code files and integrates scc output
+- **Code metrics via scc** — auto-detects code files and integrates scc output, including file-level `Complexity` where scc provides it
 - **Code exploration via `occ code`** — JS/TS, Vue SFC, Python, Go, Rust, Java, C/C++, Kotlin, and other tree-sitter-backed symbol lookup, exact `nodeId` source reads with `occ code source`, syntax checks with `occ code check`, content search, callers/callees, dependency categories, inheritance, module coupling, and ambiguity-aware chains
 - **Repository map / pack via `occ code map` / `occ code pack`** — token-budgeted, PageRank-ranked repo map (top symbol signatures per file) or content pack, with a pluggable heuristic or BPE (`o200k_base` / `cl100k_base`) tokenizer for exact budgets, and opt-in query/path focus (`--query`, `--focus-path`, `--focus-depth`) to bias the map toward a specific task
 - **Workspace analysis via `occ workspace`** — fast directory description plus combined code, document, and structure analysis with versioned JSON contracts, per-document summaries, and cross-reference detection
-- **Git context via `occ git`** — changed files, diff summaries and token-bounded patches, commit/file history, and churn hotspots over a typed, shell-injection-safe git client; plus git-aware code (`occ code diff`, `occ code history`, `occ code map --changed-from`) that maps a diff to the code symbols it touches
+- **Directory tree via `occ code dirtree`** — bounded, ignore-aware trees from the built code index with focus drill-in and map-mode symbol annotations
+- **Git context via `occ git`** — changed files, diff summaries and token-bounded patches, commit/file history, churn hotspots, and file-level co-change over a typed, shell-injection-safe git client; plus git-aware code (`occ code diff`, `occ code history`, `occ code map --changed-from`) that maps a diff to the code symbols it touches
 - **Multiple output modes** — grouped by type, per-file breakdown, or JSON
 - **CI-friendly** — ASCII-only, no-color mode for pipelines
 - **Flexible filtering** — include/exclude extensions, exclude directories, .gitignore-aware
@@ -162,6 +163,7 @@ occ code index --path . --format json
 # Token-budgeted, PageRank-ranked repo map (signatures) and pack (content)
 occ code map --path . --map-tokens 4096
 occ code pack --path . --map-tokens 8192 --tokenizer o200k_base
+occ code dirtree --path . --mode map --map-tokens 4096
 
 # Git-aware code: which symbols a diff touched, and a diff-focused repo map
 occ code diff --base main --map-tokens 4096
@@ -173,6 +175,7 @@ occ git changed --base main
 occ git diff --base main --patch --map-tokens 2048
 occ git history src/cli.ts --limit 10
 occ git churn --sort churn --limit 20
+occ git cochange --target src/cli.ts --limit 20
 
 # Workspace-level analysis (code + documents + structures)
 occ workspace analyze --format json
@@ -310,6 +313,9 @@ occ code analyze chain ambiguousCaller duplicate --path test/fixtures/code-explo
 occ code map --path . --map-tokens 4096
 occ code pack --path . --map-tokens 8192 --tokenizer o200k_base
 
+# Bounded directory tree from the built, ignore-aware code index
+occ code dirtree --path . --mode map --map-tokens 4096
+
 # Focus the map on a task — by query and/or path (with graph neighbors)
 occ code map --path . --query "workspace context injection" --focus-path src/services/memory --map-tokens 4096
 
@@ -324,9 +330,13 @@ Highlights of the current code exploration behavior:
 
 - **Full index export** via `occ code index` — dump the complete graph (files, symbols, edges, language capabilities) as JSON or a summary line
 - **Repository map and pack** via `occ code map` / `occ code pack` — PageRank-ranked, token-budgeted output (symbol signatures or file content) that greedily admits the highest-ranked files within the budget, shrinking content or shedding low-rank symbols rather than dropping a file that nearly fits, with a pluggable heuristic or BPE tokenizer (`--tokenizer o200k_base|cl100k_base`)
+- **Directory tree** via `occ code dirtree` / `buildDirectoryTree` / `session.getDirectoryTree` — bounded, ignore-aware tree output derived from `CodebaseIndex.files` with `truncatedPaths` for drill-in and map mode for top symbol signatures per subtree
 - **Focused maps** via `--query`, `--focus-path` (repeatable), and `--focus-depth` — opt-in, additive relevance scoring (query + path + graph neighbors) blended with the global rank so task-relevant files surface within the budget; omitting the flags keeps the global PageRank overview unchanged
 - **Change-aware exploration** via `occ code diff` (symbols touched by a git diff range, with removed-symbol recovery), `occ code history <symbol>` (git line history for a symbol), and `occ code map --changed-from <ref>` (diff-focused repo maps)
 - **Exact, pattern, type, and content search** over the repository graph
+- **Fuzzy symbol search** via `searchSymbols` / `session.searchSymbols` (`createOcc().code.searchSymbols`) — rank symbols across name, container-qualified name, and file path with match positions/spans for highlighting; the corpus is memoized per index so repeated queries in long-running hosts pay the build once
+- **Code-context projection** via `buildCodeContext` / `session.projectContext` (`createOcc().code.context`) — project a full or slim index down to per-file exported symbols, a deduplicated local import graph, and external dependency roots
+- **Symbol→node linkage** — index `files[].symbols[]` entries (and the slim format, `occ code map` / `find` / `index` JSON) carry a `nodeId`, so a file symbol addresses its graph node directly without scanning `nodes`
 - **Single-symbol source reads** via `occ code source` — read one symbol body by stable `nodeId` (from `occ code map` / `find` / `index` JSON) or a disambiguated name, reading file content on demand and refusing paths that escape the repo root
 - **Language-server-free syntax checks** via `occ code check` — TS/JS, Vue SFC, Python, and the vendored tree-sitter languages; exits nonzero only when `valid` is false
 - **Call analysis** with explicit `resolved`, `ambiguous`, and `unresolved` states
@@ -360,8 +370,10 @@ import { createCodeQuerySession } from '@cesarandreslopez/occ/code/session';
 const session = await createCodeQuerySession({ repoRoot: './my-repo' });
 session.findByName('UserService');
 session.analyzeCalls('bootstrap');
+session.searchSymbols('usrsvc', { limit: 10 }); // fuzzy match across name, container, and path
+session.projectContext(); // per-file exports + local import graph + external dependency roots
 session.chunk({ maxChunkWords: 200 });
-await session.refresh(); // rebuild index when files change
+await session.refresh(); // rebuild index when files change (accepts an optional AbortSignal)
 ```
 
 For persistent caching across sessions with automatic freshness checks:
@@ -374,6 +386,12 @@ const store = openCodeIndexStore({
   cacheDir: '.occ-cache',
 });
 
+// Probe the persisted cache cheaply — before the first getSession() and without
+// deserializing the index or reparsing files (both return null when no usable
+// cache exists yet). Handy for long-running hosts deciding whether to refresh.
+const meta = await store.peekMetadata(); // persisted metadata, validated against repo/options/version
+const freshness = await store.isFresh(); // stat-only working-tree vs. manifest diff
+
 // First call builds + caches; subsequent calls load from cache
 const session = await store.getSession({ strategy: 'prefer-cache' });
 session.findByName('UserService');
@@ -395,8 +413,11 @@ const session = await occ.code.createSession({ repoRoot: './my-repo' });
 const description = await occ.workspace.describe('./my-project');
 const analysis = await occ.workspace.analyze('./my-project', { includeCode: true });
 const doc = await occ.doc.inspect('report.docx', {});
+const status = await occ.health(); // version, capability flags, and a `features` map for probing
 ```
 
+The facade also exposes the code helpers directly: `occ.code.searchSymbols(index, query, options)` (fuzzy symbol search), `occ.code.context(index)` (per-file exports + local import graph), `occ.code.mapChanged(index, { changed, ...RepoMapOptions })` (the programmatic form of `occ code map --changed-from`), `occ.code.directoryTree(index, options)` / `session.getDirectoryTree(options)`, and `occ.git.cochange(options)`. Hosts that must support multiple OCC versions can feature-detect with `status.features?.['code.directoryTree'] === true`, `status.features?.['git.cochange'] === true`, or `status.features?.['metrics.fileComplexity'] === true` — the map only ever gains keys, so a missing key means the feature is unavailable.
+
 For large or untrusted repositories, preview the size first, then build the index in an isolated subprocess with a budget. Pair with the slim variant when the consumer only needs the graph (no source content):
 
 ```ts
@@ -493,7 +514,7 @@ Available subpath exports:
 | `@cesarandreslopez/occ/code/build`              | `buildCodebaseIndex` — graph construction (with optional `maxFiles`/`maxBytes`/`onBudgetExceeded` budget controls and `CodeIndexBudgetExceededError`); also `parseCodeFiles` (bounded-concurrency parse pool) + `assembleCodebaseIndex` for staged indexing                                                                                               |
 | `@cesarandreslopez/occ/code/types`              | TypeScript types (`CodebaseIndex`, `CodeNode`, `CodeEdge`, `IndexTruncation`, etc.)                                                                                                                                                                                                                                                                       |
 | `@cesarandreslopez/occ/code/query`              | Query functions (`findByName`, `analyzeCalls`, `analyzeDeps`, etc.)                                                                                                                                                                                                                                                                                       |
-| `@cesarandreslopez/occ/code/discover`           | `discoverCodeFiles` — file discovery                                                                                                                                                                                                                                                                                                                      |
+| `@cesarandreslopez/occ/code/discover`           | `discoverCodeFiles` — code file discovery (defaults to the shared `DEFAULT_EXCLUDE_DIRS`, re-exported here and from the package root — now also covering `out`, `.next`, `__pycache__`, and `.venv`)                                                                                                                                                      |
 | `@cesarandreslopez/occ/code/preview`            | `previewCodebaseSize` — cheap size + per-language estimate without parsing, with budget pressure reporting                                                                                                                                                                                                                                                |
 | `@cesarandreslopez/occ/code/isolated`           | `buildCodebaseIndexIsolated` — runs `buildCodebaseIndex` in a forked subprocess, optionally returning a slim index; also `chunkFromStoreIsolated` — runs store-backed code chunking in a forked subprocess (options `ChunkFromStoreIsolatedOptions`, `SerializableCodeChunkOptions`)                                                                      |
 | `@cesarandreslopez/occ/code/incremental`        | `computeManifestDiff`, `classifyChangedFiles`, `findResolutionImpactedFiles`, `spliceIndexInputs` — primitives behind incremental `update()`/`ensureFresh()` (manifest diff + resolution-impact + graph splice)                                                                                                                                           |
@@ -503,7 +524,7 @@ Available subpath exports:
 | `@cesarandreslopez/occ/code/store`              | `openCodeIndexStore`, `openChunkCodeIndexStore` — persistent index store with cache strategies (the chunk variant pins `contentMode: 'full'`; `update(changedFiles?)` does a true incremental refresh — manifest diff + targeted re-parse + graph splice; `chunkIsolated(options?)` chunks the cached index in a forked subprocess)                       |
 | `@cesarandreslopez/occ/code/cache`              | Index caching utilities (legacy — prefer `./code/store`)                                                                                                                                                                                                                                                                                                  |
 | `@cesarandreslopez/occ/code/diff`               | `computeCodeDiff`, `joinHunksToSymbols` — map a git diff range to changed code symbols (added/removed/modified, new/removed exports, removed-symbol recovery)                                                                                                                                                                                             |
-| `@cesarandreslopez/occ/git`                     | Git context API — `getGitChangedFiles`, `getGitDiffSummary`, `getGitDiffPatch`, `getGitDiffHunks`, `getGitDiffFunctionContext`, `getGitCommitHistory`, `getGitFileHistory`, `getGitChurnSummary`, `resolveGitRange` (also `./git/types`, `./git/api`, `./git/client`, `./git/parse`)                                                                      |
+| `@cesarandreslopez/occ/git`                     | Git context API — `getGitChangedFiles`, `getGitDiffSummary`, `getGitDiffPatch`, `getGitDiffHunks`, `getGitDiffFunctionContext`, `getGitCommitHistory`, `getGitFileHistory`, `getGitChurnSummary`, `getGitCochange`, `resolveGitRange` (also `./git/types`, `./git/api`, `./git/client`, `./git/parse`)                                                    |
 | `@cesarandreslopez/occ/doc/inspect`             | `inspectDocument` — document metadata and content extraction                                                                                                                                                                                                                                                                                              |
 | `@cesarandreslopez/occ/doc/types`               | Document inspection types                                                                                                                                                                                                                                                                                                                                 |
 | `@cesarandreslopez/occ/doc/discover`            | Document file discovery (now includes prose formats by default; opt into data files via `includeDataFiles`; new `discoverDocumentSet` returns `{ documents, skipped }`)                                                                                                                                                                                   |
@@ -526,7 +547,7 @@ Available subpath exports:
 | `@cesarandreslopez/occ/slide/inspect`           | `inspectPresentation` — presentation inspection                                                                                                                                                                                                                                                                                                           |
 | `@cesarandreslopez/occ/table/inspect`           | Table extraction from documents                                                                                                                                                                                                                                                                                                                           |
 | `@cesarandreslopez/occ/table/types`             | Table extraction types                                                                                                                                                                                                                                                                                                                                    |
-| `@cesarandreslopez/occ/health`                  | `health()` — liveness probe with version + capability flags                                                                                                                                                                                                                                                                                               |
+| `@cesarandreslopez/occ/health`                  | `health()` — liveness probe with version, capability flags, and a stable `features` map (only-added keys like `code.searchSymbols` / `store.isFresh`) for fine-grained feature detection                                                                                                                                                                  |
 | `@cesarandreslopez/occ/errors`                  | `OccAbortError`, `OCC_ABORTED`, `isOccAbortError` — typed abort error that survives `instanceof` across forked subprocesses                                                                                                                                                                                                                               |
 | `@cesarandreslopez/occ/types`                   | Shared types (`ConfidenceLevel`, `ParseResult`, `ParserOutput`, etc.)                                                                                                                                                                                                                                                                                     |
 | `@cesarandreslopez/occ/tokens`                  | Token estimation utilities                                                                                                                                                                                                                                                                                                                                |
@@ -703,6 +724,7 @@ occ git history src/cli.ts --line-start 10 --line-end 50
 
 # Rank changed files by churn to find hotspots
 occ git churn --sort churn --limit 20 --format json
+occ git cochange --target src/cli.ts --limit 20 --format json
 ```
 
 Current git context highlights:
@@ -711,6 +733,7 @@ Current git context highlights:
 - **`occ git diff`** — per-file churn summary, or the raw unified patch with `--patch`, token-bounded via `--map-tokens` / `--tokenizer` (degrades gracefully, reporting `filesOmitted`, when the diff exceeds the git buffer)
 - **`occ git history`** — commit history for a range, or per-file history with `--follow`, `--since`, `--limit`, and line-scoped `git log -L` via `--line-start` / `--line-end`
 - **`occ git churn`** — files ranked by `--sort churn|commits|added|deleted|net` (default `churn`) with commit, addition, deletion, net, and last-touched metrics
+- **`occ git cochange`** — file pairs ranked by historical co-change count and lift, with `--target` for one-file impact context and `--max-commit-files` to ignore sweeping commits
 - **Symbol-level changes** — pair with `occ code diff` to see which _symbols_ (not just files and lines) a diff touched
 
 ## Documentation

package/dist/src/cli.d.ts

@@ -19,6 +19,22 @@ declare const CliOptionsSchema: z.ZodObject<{
     showConfidence: z.ZodOptional<z.ZodBoolean>;
 }, z.core.$loose>;
 type CliOptions = z.infer<typeof CliOptionsSchema>;
+/**
+ * Resolve the scc binary, degrading to null (documents-only) when scc is not
+ * available instead of aborting the whole scan. Returns a warning string when
+ * scc could not be found so the caller can surface it without failing.
+ */
+export declare function resolveSccBinary(resolve?: () => Promise<string>): Promise<{
+    binary: string | null;
+    warning: string | null;
+}>;
+/**
+ * Translate directory-style ignore patterns into scc --exclude-dir names. scc
+ * excludes by directory basename, so only single-segment directory patterns
+ * (optionally with a trailing slash, `/**`, or `/*`) can be forwarded; negations,
+ * multi-segment paths, and wildcard patterns are left to apply to documents only.
+ */
+export declare function deriveSccExcludeDirs(ignorePatterns: string[]): string[];
 export declare function run(argv: string[]): Promise<void>;
 export declare function applyTokenBudget(output: string, opts: CliOptions): Promise<string>;
 export {};

package/dist/src/cli.js

@@ -48,6 +48,45 @@ const CliOptionsSchema = z
 function collectOption(value, previous = []) {
     return [...previous, value];
 }
+/**
+ * Resolve the scc binary, degrading to null (documents-only) when scc is not
+ * available instead of aborting the whole scan. Returns a warning string when
+ * scc could not be found so the caller can surface it without failing.
+ */
+export async function resolveSccBinary(resolve = checkScc) {
+    try {
+        return { binary: await resolve(), warning: null };
+    }
+    catch {
+        return {
+            binary: null,
+            warning: 'scc not found; skipping code analysis (documents only). ' +
+                'Run "npm install" to auto-download it, or install from https://github.com/boyter/scc.',
+        };
+    }
+}
+/**
+ * Translate directory-style ignore patterns into scc --exclude-dir names. scc
+ * excludes by directory basename, so only single-segment directory patterns
+ * (optionally with a trailing slash, `/**`, or `/*`) can be forwarded; negations,
+ * multi-segment paths, and wildcard patterns are left to apply to documents only.
+ */
+export function deriveSccExcludeDirs(ignorePatterns) {
+    const dirs = [];
+    for (const raw of ignorePatterns) {
+        const pattern = raw.trim();
+        if (!pattern || pattern.startsWith('!') || pattern.startsWith('#'))
+            continue;
+        const stripped = pattern.replace(/^\.?\/+/, '').replace(/\/(\*\*|\*)?$/, '');
+        if (!stripped || stripped === '.' || stripped === '..')
+            continue;
+        if (/[/*?[\]{}]/.test(stripped))
+            continue;
+        if (!dirs.includes(stripped))
+            dirs.push(stripped);
+    }
+    return dirs;
+}
 const PackageJsonSchema = z.object({ version: z.string() }).passthrough();
 // Find package.json — works from both src/ (dev) and dist/src/ (built)
 const __dirname = path.dirname(fileURLToPath(import.meta.url));
@@ -75,7 +114,7 @@ export async function run(argv) {
         .option('--include-ext <exts>', 'comma-separated extensions to include')
         .option('--exclude-ext <exts>', 'comma-separated extensions to exclude')
         .option('--exclude-dir <dirs>', 'directories to skip (comma-separated)', 'node_modules,.git')
-        .option('--ignore-pattern <pattern>', 'gitignore-style pattern to ignore', collectOption, [])
+        .option('--ignore-pattern <pattern>', 'gitignore-style pattern to ignore (directory-name patterns also excluded from code metrics)', collectOption, [])
         .option('--no-gitignore', 'disable .gitignore respect')
         // Note: this is a global option, so it is inherited by every subcommand. It is
         // intentionally not constrained with .choices() because subcommands (e.g. `git churn`)
@@ -206,7 +245,10 @@ async function execute(directories, opts) {
     const includeCode = opts.code !== false;
     let sccBinary = null;
     if (includeCode) {
-        sccBinary = await checkScc();
+        const resolved = await resolveSccBinary();
+        sccBinary = resolved.binary;
+        if (resolved.warning)
+            await writeStream(process.stderr, `Warning: ${resolved.warning}\n`);
     }
     // Find and parse office documents
     const { files, skipped } = await findFiles(directories, {
@@ -230,12 +272,12 @@ async function execute(directories, opts) {
         showConfidence: opts.showConfidence,
     });
     let sccData = null;
-    if (includeCode) {
+    if (includeCode && sccBinary) {
         if (showProgress)
             process.stderr.write('\rAnalyzing code with scc...');
         sccData = await runScc(sccBinary, directories, {
             byFile: opts.byFile,
-            excludeDir: excludeDirs,
+            excludeDir: [...excludeDirs, ...deriveSccExcludeDirs(opts.ignorePattern ?? [])],
             sort: opts.sort,
             ci: opts.ci,
             noGitignore: !opts.gitignore,

package/dist/src/cli.js.map

@@ -1 +1 @@
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package/dist/src/code/build.d.ts

@@ -78,6 +78,22 @@ export declare class CodeIndexBudgetExceededError extends Error {
     readonly budget: CodeIndexBudget;
     constructor(budget: CodeIndexBudget);
 }
+/**
+ * Pre-parse stat snapshot for a file retained by the build. Structurally
+ * compatible with the incremental manifest entry shape. Captured BEFORE
+ * parsing, so an edit made while the build is running diverges from the
+ * recorded stat and is detected by the next freshness check.
+ */
+export interface BuildFileStat {
+    relativePath: string;
+    size: number;
+    mtimeMs: number;
+}
+export interface BuildCodebaseResult {
+    index: CodebaseIndex;
+    /** Stats for the budgeted file set, keyed for manifest reuse by stores. */
+    fileStats: BuildFileStat[];
+}
 /**
  * Parse `files` with bounded concurrency. Both result arrays are returned in
  * input order (per-slot results are compacted after the pool drains).
@@ -86,5 +102,11 @@ export declare class CodeIndexBudgetExceededError extends Error {
  */
 export declare function parseCodeFiles(files: string[], options: ParseCodeFilesOptions, onProgress?: OnProgress, signal?: AbortSignal, yielder?: Yielder): Promise<ParseCodeFilesResult>;
 export declare function buildCodebaseIndex(options: BuildCodebaseOptions, onProgress?: OnProgress, signal?: AbortSignal): Promise<CodebaseIndex>;
+/**
+ * Like {@link buildCodebaseIndex}, but also returns the pre-parse stat
+ * snapshot of the budgeted file set so callers persisting a freshness
+ * manifest don't have to re-stat every file after the build.
+ */
+export declare function buildCodebaseIndexWithStats(options: BuildCodebaseOptions, onProgress?: OnProgress, signal?: AbortSignal): Promise<BuildCodebaseResult>;
 export declare function assembleCodebaseIndex(input: AssembleCodebaseIndexInput, onProgress?: OnProgress, signal?: AbortSignal): CodebaseIndex;
 export declare function assembleCodebaseIndexCooperative(input: AssembleCodebaseIndexInput, yielder: Yielder, onProgress?: OnProgress, signal?: AbortSignal): Promise<CodebaseIndex>;

package/dist/src/code/build.js

@@ -107,7 +107,7 @@ async function withFileSizes(filePaths, signal) {
     const statted = await mapWithConcurrency(filePaths, 32, async (filePath) => {
         try {
             const fileStat = await stat(filePath);
-            return fileStat.isFile() ? { path: filePath, size: fileStat.size } : null;
+            return fileStat.isFile() ? { path: filePath, size: fileStat.size, mtimeMs: fileStat.mtimeMs } : null;
         }
         catch {
             // Files can disappear between discovery and stat; they are dropped from
@@ -329,6 +329,15 @@ export async function parseCodeFiles(files, options, onProgress, signal, yielder
     return { parsedFiles, skippedFiles };
 }
 export async function buildCodebaseIndex(options, onProgress, signal) {
+    const { index } = await buildCodebaseIndexWithStats(options, onProgress, signal);
+    return index;
+}
+/**
+ * Like {@link buildCodebaseIndex}, but also returns the pre-parse stat
+ * snapshot of the budgeted file set so callers persisting a freshness
+ * manifest don't have to re-stat every file after the build.
+ */
+export async function buildCodebaseIndexWithStats(options, onProgress, signal) {
     const repoRoot = path.resolve(options.repoRoot);
     const contentMode = options.contentMode ?? 'excerpt';
     const cooperative = isCooperative(options.cooperative);
@@ -366,9 +375,18 @@ export async function buildCodebaseIndex(options, onProgress, signal) {
         skippedFiles,
         truncated: budgeted.truncated,
     };
-    return yielder
-        ? assembleCodebaseIndexCooperative(input, yielder, onProgress, signal)
+    const index = yielder
+        ? await assembleCodebaseIndexCooperative(input, yielder, onProgress, signal)
         : assembleCodebaseIndex(input, onProgress, signal);
+    const budgetedPaths = new Set(budgeted.files);
+    const fileStats = discoveredWithSizes
+        .filter(file => budgetedPaths.has(file.path))
+        .map(file => ({
+        relativePath: normalizePath(path.relative(repoRoot, file.path)),
+        size: file.size,
+        mtimeMs: file.mtimeMs,
+    }));
+    return { index, fileStats };
 }
 /**
  * Assemble the node/edge graph from already-parsed files. Synchronous —
@@ -437,8 +455,14 @@ function* assembleSteps(input, onProgress, signal) {
         });
         const symbolIndex = new Map();
         for (const symbol of file.symbols) {
-            const containerId = symbol.containerName
-                ? makeId('class', file.path, symbol.containerName, file.symbols.find(candidate => candidate.type === 'class' && candidate.name === symbol.containerName)?.line)
+            // Containers can be classes or interface-like types (interfaces, traits,
+            // protocols). Rebuild the container id exactly as the container node's own
+            // id is constructed below so member `contains` edges resolve to a real node.
+            const container = symbol.containerName
+                ? file.symbols.find(candidate => (candidate.type === 'class' || candidate.type === 'interface') && candidate.name === symbol.containerName)
+                : undefined;
+            const containerId = container
+                ? makeId(container.type, file.path, container.name, container.line, container.containerName)
                 : moduleNode.id;
             const node = {
                 id: makeId(symbol.type, file.path, symbol.name, symbol.line, symbol.containerName),
@@ -457,6 +481,10 @@ function* assembleSteps(input, onProgress, signal) {
                 signature: symbol.signature,
             };
             pushNode(node);
+            // Stamp the graph linkage onto the file symbol so index consumers can
+            // jump from files[].symbols[] to nodes without a scan. Node ids are
+            // deterministic, so re-assembly over cached parses stamps identically.
+            symbol.nodeId = node.id;
             symbolByIdentity.set(makeId(symbol.type, file.path, symbol.name, symbol.line, symbol.containerName), node);
             mapPush(symbolIndex, symbol.name, node);
             edges.push({
@@ -506,12 +534,18 @@ function* assembleSteps(input, onProgress, signal) {
                     const sourceSymbols = topLevelSymbolsByFile.get(fileImport.resolvedPath);
                     if (sourceSymbols) {
                         for (const name of sourceSymbols.keys()) {
-                            fileMap.set(name, fileImport.resolvedPath);
+                            fileMap.set(name, { path: fileImport.resolvedPath, sourceName: name });
                         }
                     }
                 }
                 else {
-                    fileMap.set(binding.localName, fileImport.resolvedPath);
+                    // For aliased re-exports (`export { foo as baz }`) the source module
+                    // exports the original name, so resolution must look it up by
+                    // importedName, not the outward alias.
+                    fileMap.set(binding.localName, {
+                        path: fileImport.resolvedPath,
+                        sourceName: binding.importedName ?? binding.localName,
+                    });
                 }
             }
         }
@@ -666,9 +700,9 @@ function* assembleSteps(input, onProgress, signal) {
             else if (namespaceBinding?.modulePath) {
                 let importedFileSymbols = topLevelSymbolsByFile.get(namespaceBinding.modulePath)?.get(call.calleeName) ?? [];
                 if (importedFileSymbols.length === 0) {
-                    const reExportSource = reExportsByFile.get(namespaceBinding.modulePath)?.get(call.calleeName);
-                    if (reExportSource) {
-                        importedFileSymbols = topLevelSymbolsByFile.get(reExportSource)?.get(call.calleeName) ?? [];
+                    const reExport = reExportsByFile.get(namespaceBinding.modulePath)?.get(call.calleeName);
+                    if (reExport) {
+                        importedFileSymbols = topLevelSymbolsByFile.get(reExport.path)?.get(reExport.sourceName) ?? [];
                     }
                 }
                 if (importedFileSymbols.length > 0)
@@ -678,9 +712,9 @@ function* assembleSteps(input, onProgress, signal) {
                 const symbolName = directBinding.importedName ?? call.calleeName;
                 let importedFileSymbols = topLevelSymbolsByFile.get(directBinding.modulePath)?.get(symbolName) ?? [];
                 if (importedFileSymbols.length === 0) {
-                    const reExportSource = reExportsByFile.get(directBinding.modulePath)?.get(symbolName);
-                    if (reExportSource) {
-                        importedFileSymbols = topLevelSymbolsByFile.get(reExportSource)?.get(symbolName) ?? [];
+                    const reExport = reExportsByFile.get(directBinding.modulePath)?.get(symbolName);
+                    if (reExport) {
+                        importedFileSymbols = topLevelSymbolsByFile.get(reExport.path)?.get(reExport.sourceName) ?? [];
                     }
                 }
                 if (importedFileSymbols.length > 0)