@cdoing/core 0.1.0

package/dist/indexing/indexer.js

@@ -0,0 +1,352 @@
+"use strict";
+/**
+ * Codebase Indexer — orchestrates indexing of an entire codebase.
+ *
+ * Pipeline:
+ *   1. Scan files (respects .gitignore, skips binaries/large files)
+ *   2. Compute cache keys (SHA-256 of content)
+ *   3. Diff against catalog (find new/modified/deleted files)
+ *   4. Chunk new/modified files
+ *   5. Insert chunks into SQLite
+ *   6. Build FTS5 index
+ *   7. Optionally compute embeddings (if provider configured)
+ *
+ * Supports incremental updates — only re-indexes changed files.
+ */
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.CodebaseIndexer = void 0;
+const fs = __importStar(require("fs"));
+const path = __importStar(require("path"));
+const glob_1 = require("glob");
+const database_1 = require("./database");
+const chunker_1 = require("./chunker");
+const gitignore_1 = require("../utils/gitignore");
+/** File extensions to index */
+const INDEXABLE_EXTENSIONS = new Set([
+    // Code
+    ".ts", ".tsx", ".js", ".jsx", ".mjs", ".cjs",
+    ".py", ".rb", ".go", ".rs", ".java", ".kt", ".scala",
+    ".c", ".cpp", ".h", ".hpp", ".cs", ".swift",
+    ".lua", ".php", ".pl", ".sh", ".bash", ".zsh",
+    // Config/Data
+    ".json", ".yaml", ".yml", ".toml", ".xml",
+    ".html", ".css", ".scss", ".less", ".vue", ".svelte",
+    // Docs
+    ".md", ".mdx", ".txt", ".rst",
+    // Other
+    ".sql", ".graphql", ".gql", ".proto",
+    ".env.example", ".gitignore", ".dockerignore",
+    "Dockerfile", "Makefile", "Gemfile",
+]);
+const SKIP_DIRS = new Set([
+    "node_modules", ".git", "dist", "build", "out", ".next", ".nuxt",
+    "__pycache__", ".cache", ".turbo", "coverage", "venv", ".venv",
+    "target", "vendor", ".idea", ".vscode",
+]);
+const MAX_FILE_SIZE = 1024 * 1024; // 1MB
+const BATCH_SIZE = 200;
+class CodebaseIndexer {
+    db;
+    workingDir;
+    embeddingProvider;
+    constructor(workingDir, embeddingProvider, dbPath) {
+        this.workingDir = path.resolve(workingDir);
+        this.db = new database_1.IndexDatabase(dbPath);
+        this.embeddingProvider = embeddingProvider;
+    }
+    /**
+     * Index the entire codebase (incremental — only processes changed files).
+     */
+    async index(onProgress) {
+        const report = (phase, current, total, message) => {
+            onProgress?.({ phase, current, total, message });
+        };
+        // 1. Scan files
+        report("scan", 0, 1, "Scanning files...");
+        const files = await this.scanFiles();
+        report("scan", 1, 1, `Found ${files.length} files`);
+        // 2. Diff against catalog
+        report("diff", 0, 1, "Computing changes...");
+        const catalogPaths = this.db.getCatalogPaths(this.workingDir);
+        const currentPaths = new Map();
+        for (const filePath of files) {
+            try {
+                const content = fs.readFileSync(filePath, "utf-8");
+                const key = database_1.IndexDatabase.cacheKey(content);
+                currentPaths.set(filePath, key);
+            }
+            catch {
+                // Skip unreadable files
+            }
+        }
+        // Classify: new, modified, deleted, unchanged
+        const toAdd = [];
+        const toUpdate = [];
+        const toDelete = [];
+        for (const [filePath, cacheKey] of currentPaths) {
+            const existing = catalogPaths.get(filePath);
+            if (!existing) {
+                toAdd.push(filePath);
+            }
+            else if (existing !== cacheKey) {
+                toUpdate.push(filePath);
+            }
+            // else: unchanged — skip
+        }
+        for (const filePath of catalogPaths.keys()) {
+            if (!currentPaths.has(filePath)) {
+                toDelete.push(filePath);
+            }
+        }
+        report("diff", 1, 1, `Changes: ${toAdd.length} new, ${toUpdate.length} modified, ${toDelete.length} deleted`);
+        // 3. Delete removed files
+        for (const filePath of toDelete) {
+            this.db.deleteChunksByPath(filePath);
+            this.db.removeCatalogEntry(filePath, this.workingDir);
+        }
+        // 4. Delete modified files (will re-index)
+        for (const filePath of toUpdate) {
+            this.db.deleteChunksByPath(filePath);
+        }
+        // 5. Process new + modified files in batches
+        const toProcess = [...toAdd, ...toUpdate];
+        let totalChunks = 0;
+        for (let batch = 0; batch < toProcess.length; batch += BATCH_SIZE) {
+            const batchFiles = toProcess.slice(batch, batch + BATCH_SIZE);
+            report("index", batch, toProcess.length, `Indexing batch ${Math.floor(batch / BATCH_SIZE) + 1}...`);
+            for (const filePath of batchFiles) {
+                const cacheKey = currentPaths.get(filePath);
+                const content = fs.readFileSync(filePath, "utf-8");
+                const relPath = path.relative(this.workingDir, filePath);
+                if (!(0, chunker_1.shouldChunk)(filePath, content.length))
+                    continue;
+                // Chunk the file
+                const rawChunks = (0, chunker_1.chunkDocument)(filePath, content);
+                if (rawChunks.length === 0)
+                    continue;
+                const chunks = rawChunks.map((c) => ({
+                    content: c.content,
+                    path: relPath,
+                    startLine: c.startLine,
+                    endLine: c.endLine,
+                    cacheKey,
+                }));
+                // Insert chunks
+                const chunkIds = this.db.insertChunks(chunks);
+                totalChunks += chunkIds.length;
+                // Build FTS index
+                for (let i = 0; i < chunkIds.length; i++) {
+                    if (chunkIds[i] > 0) {
+                        this.db.insertFts(chunkIds[i], relPath, chunks[i].content, cacheKey);
+                    }
+                }
+                // Update catalog
+                this.db.updateCatalog(filePath, cacheKey, this.workingDir);
+            }
+        }
+        // 6. Compute embeddings (if provider available)
+        if (this.embeddingProvider && toProcess.length > 0) {
+            report("embeddings", 0, 1, "Computing embeddings...");
+            await this.computeEmbeddings(toProcess, currentPaths);
+            report("embeddings", 1, 1, "Embeddings complete");
+        }
+        report("done", 1, 1, "Indexing complete");
+        return {
+            added: toAdd.length,
+            updated: toUpdate.length,
+            deleted: toDelete.length,
+            totalChunks,
+        };
+    }
+    /**
+     * Search the index using full-text search (BM25).
+     */
+    searchFts(query, limit = 25, directory) {
+        return this.db.searchFts(query, limit, directory);
+    }
+    /**
+     * Search using vector similarity (cosine similarity).
+     * Requires an embedding provider.
+     */
+    async searchSemantic(query, limit = 25, directory) {
+        if (!this.embeddingProvider)
+            return [];
+        const [queryVector] = await this.embeddingProvider.embed([query]);
+        if (!queryVector)
+            return [];
+        const embeddings = this.db.getEmbeddings(this.embeddingProvider.modelId, directory);
+        if (embeddings.length === 0)
+            return [];
+        // Compute cosine similarity
+        const scored = embeddings.map((e) => ({
+            ...e,
+            score: cosineSimilarity(queryVector, e.vector),
+        }));
+        // Sort by similarity (highest first) and take top-k
+        scored.sort((a, b) => b.score - a.score);
+        return scored.slice(0, limit).map((s) => ({
+            path: s.path,
+            content: s.content,
+            startLine: s.startLine,
+            endLine: s.endLine,
+            score: s.score,
+            source: "embedding",
+        }));
+    }
+    /**
+     * Combined search: FTS (25%) + Embeddings (75%), deduplicated.
+     */
+    async search(query, limit = 25, directory) {
+        const ftsLimit = Math.ceil(limit * 0.35);
+        const embLimit = Math.ceil(limit * 0.65);
+        const [ftsResults, embResults] = await Promise.all([
+            Promise.resolve(this.searchFts(query, ftsLimit, directory)),
+            this.searchSemantic(query, embLimit, directory),
+        ]);
+        // Deduplicate by path + startLine
+        const seen = new Set();
+        const combined = [];
+        for (const r of [...embResults, ...ftsResults]) {
+            const key = `${r.path}:${r.startLine}`;
+            if (seen.has(key))
+                continue;
+            seen.add(key);
+            combined.push(r);
+        }
+        return combined.slice(0, limit);
+    }
+    /**
+     * Get index statistics.
+     */
+    getStats() {
+        return this.db.getStats();
+    }
+    /**
+     * Clear the entire index.
+     */
+    clearIndex() {
+        this.db.clearAll();
+    }
+    /**
+     * Close the database connection.
+     */
+    close() {
+        this.db.close();
+    }
+    // ── Private methods ───────────────────────────────────────────────────────
+    async scanFiles() {
+        const ignorePatterns = (0, gitignore_1.loadIgnorePatterns)(this.workingDir);
+        const allFiles = await (0, glob_1.glob)("**/*", {
+            cwd: this.workingDir,
+            absolute: true,
+            nodir: true,
+            ignore: [
+                ...SKIP_DIRS.values(),
+                ...ignorePatterns.map((p) => `**/${p}/**`),
+            ].map(p => `**/${p}`),
+        });
+        return allFiles.filter((f) => {
+            const ext = path.extname(f).toLowerCase();
+            const basename = path.basename(f);
+            // Check extension or known config filenames
+            if (!INDEXABLE_EXTENSIONS.has(ext) && !INDEXABLE_EXTENSIONS.has(basename))
+                return false;
+            // Check file size
+            try {
+                const stat = fs.statSync(f);
+                if (stat.size > MAX_FILE_SIZE || stat.size === 0)
+                    return false;
+            }
+            catch {
+                return false;
+            }
+            // Skip dirs in path
+            const rel = path.relative(this.workingDir, f);
+            const parts = rel.split(path.sep);
+            if (parts.some((p) => SKIP_DIRS.has(p)))
+                return false;
+            return true;
+        });
+    }
+    async computeEmbeddings(filePaths, cacheKeys) {
+        if (!this.embeddingProvider)
+            return;
+        const model = this.embeddingProvider.modelId;
+        const batchSize = this.embeddingProvider.maxBatchSize || 64;
+        // Collect all chunks that need embeddings
+        const chunksToEmbed = [];
+        for (const filePath of filePaths) {
+            const relPath = path.relative(this.workingDir, filePath);
+            const cacheKey = cacheKeys.get(filePath);
+            // Get chunks for this file
+            const rows = this.db["db"].prepare("SELECT id, content FROM chunks WHERE path = ? AND cacheKey = ?").all(relPath, cacheKey);
+            for (const row of rows) {
+                chunksToEmbed.push({ chunkId: row.id, path: relPath, content: row.content, cacheKey });
+            }
+        }
+        // Batch embed
+        for (let i = 0; i < chunksToEmbed.length; i += batchSize) {
+            const batch = chunksToEmbed.slice(i, i + batchSize);
+            const texts = batch.map((c) => c.content);
+            try {
+                const vectors = await this.embeddingProvider.embed(texts);
+                for (let j = 0; j < batch.length; j++) {
+                    if (vectors[j]) {
+                        this.db.insertEmbedding(batch[j].chunkId, batch[j].path, batch[j].cacheKey, vectors[j], model);
+                    }
+                }
+            }
+            catch {
+                // Embedding failed for this batch — continue with next
+            }
+        }
+    }
+}
+exports.CodebaseIndexer = CodebaseIndexer;
+/** Cosine similarity between two vectors */
+function cosineSimilarity(a, b) {
+    if (a.length !== b.length)
+        return 0;
+    let dot = 0, magA = 0, magB = 0;
+    for (let i = 0; i < a.length; i++) {
+        dot += a[i] * b[i];
+        magA += a[i] * a[i];
+        magB += b[i] * b[i];
+    }
+    const denom = Math.sqrt(magA) * Math.sqrt(magB);
+    return denom === 0 ? 0 : dot / denom;
+}
+//# sourceMappingURL=indexer.js.map

package/dist/indexing/indexer.js.map

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package/dist/indexing/recent-edits-cache.d.ts

@@ -0,0 +1,77 @@
+/**
+ * Recently-Edited LRU Cache — Keeps recently edited files hot for fast retrieval.
+ *
+ * When the agent edits a file, it's added to this cache. Subsequent codebase
+ * searches prioritize cached files, and context providers can include recent
+ * edits without re-reading from disk.
+ *
+ * This matches what Cursor and Windsurf do with their "recently edited" caches
+ * to improve relevance of search results and context suggestions.
+ */
+export interface CachedEdit {
+    /** Absolute file path */
+    filePath: string;
+    /** Content at time of last edit */
+    content: string;
+    /** Timestamp of last edit */
+    editedAt: number;
+    /** Number of times this file has been edited in the session */
+    editCount: number;
+    /** Brief description of last edit (e.g., "replaced 2 occurrences") */
+    lastEditSummary: string;
+}
+export declare class RecentEditsCache {
+    private cache;
+    private readonly maxSize;
+    constructor(maxSize?: number);
+    /**
+     * Record a file edit. Moves the file to the front of the LRU cache.
+     */
+    put(filePath: string, content: string, editSummary?: string): void;
+    /**
+     * Get a cached file by path. Returns null if not in cache.
+     */
+    get(filePath: string): CachedEdit | null;
+    /**
+     * Check if a file is in the cache.
+     */
+    has(filePath: string): boolean;
+    /**
+     * Get all cached edits, ordered by most recently edited first.
+     */
+    getRecent(limit?: number): CachedEdit[];
+    /**
+     * Get file paths of recently edited files, most recent first.
+     */
+    getRecentPaths(limit?: number): string[];
+    /**
+     * Get files that match a search query (case-insensitive path match).
+     * Recently edited files that match are boosted in search results.
+     */
+    searchByPath(query: string): CachedEdit[];
+    /**
+     * Search cached file contents for a text pattern.
+     */
+    searchContent(pattern: string): Array<{
+        entry: CachedEdit;
+        matches: number;
+    }>;
+    /**
+     * Remove a file from the cache.
+     */
+    remove(filePath: string): boolean;
+    /**
+     * Clear the entire cache.
+     */
+    clear(): void;
+    /**
+     * Get cache statistics.
+     */
+    stats(): {
+        size: number;
+        maxSize: number;
+        totalEdits: number;
+        oldestEditAt: number | null;
+    };
+}
+//# sourceMappingURL=recent-edits-cache.d.ts.map

package/dist/indexing/recent-edits-cache.d.ts.map

@@ -0,0 +1 @@
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package/dist/indexing/recent-edits-cache.js

@@ -0,0 +1,123 @@
+"use strict";
+/**
+ * Recently-Edited LRU Cache — Keeps recently edited files hot for fast retrieval.
+ *
+ * When the agent edits a file, it's added to this cache. Subsequent codebase
+ * searches prioritize cached files, and context providers can include recent
+ * edits without re-reading from disk.
+ *
+ * This matches what Cursor and Windsurf do with their "recently edited" caches
+ * to improve relevance of search results and context suggestions.
+ */
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.RecentEditsCache = void 0;
+class RecentEditsCache {
+    cache = new Map();
+    maxSize;
+    constructor(maxSize = 50) {
+        this.maxSize = maxSize;
+    }
+    /**
+     * Record a file edit. Moves the file to the front of the LRU cache.
+     */
+    put(filePath, content, editSummary = "") {
+        const existing = this.cache.get(filePath);
+        // Delete first to re-insert at end (Map preserves insertion order)
+        if (existing) {
+            this.cache.delete(filePath);
+        }
+        this.cache.set(filePath, {
+            filePath,
+            content,
+            editedAt: Date.now(),
+            editCount: (existing?.editCount || 0) + 1,
+            lastEditSummary: editSummary,
+        });
+        // Evict oldest if over capacity
+        if (this.cache.size > this.maxSize) {
+            const oldest = this.cache.keys().next().value;
+            if (oldest !== undefined) {
+                this.cache.delete(oldest);
+            }
+        }
+    }
+    /**
+     * Get a cached file by path. Returns null if not in cache.
+     */
+    get(filePath) {
+        return this.cache.get(filePath) || null;
+    }
+    /**
+     * Check if a file is in the cache.
+     */
+    has(filePath) {
+        return this.cache.has(filePath);
+    }
+    /**
+     * Get all cached edits, ordered by most recently edited first.
+     */
+    getRecent(limit = 10) {
+        const entries = Array.from(this.cache.values());
+        // Map preserves insertion order; last inserted = most recent
+        return entries.reverse().slice(0, limit);
+    }
+    /**
+     * Get file paths of recently edited files, most recent first.
+     */
+    getRecentPaths(limit = 10) {
+        return this.getRecent(limit).map((e) => e.filePath);
+    }
+    /**
+     * Get files that match a search query (case-insensitive path match).
+     * Recently edited files that match are boosted in search results.
+     */
+    searchByPath(query) {
+        const lower = query.toLowerCase();
+        return Array.from(this.cache.values())
+            .filter((e) => e.filePath.toLowerCase().includes(lower))
+            .reverse(); // most recent first
+    }
+    /**
+     * Search cached file contents for a text pattern.
+     */
+    searchContent(pattern) {
+        const results = [];
+        const regex = new RegExp(pattern, "gi");
+        for (const entry of this.cache.values()) {
+            const matches = (entry.content.match(regex) || []).length;
+            if (matches > 0) {
+                results.push({ entry, matches });
+            }
+        }
+        // Sort by match count (descending), then recency
+        return results.sort((a, b) => b.matches - a.matches || b.entry.editedAt - a.entry.editedAt);
+    }
+    /**
+     * Remove a file from the cache.
+     */
+    remove(filePath) {
+        return this.cache.delete(filePath);
+    }
+    /**
+     * Clear the entire cache.
+     */
+    clear() {
+        this.cache.clear();
+    }
+    /**
+     * Get cache statistics.
+     */
+    stats() {
+        let totalEdits = 0;
+        let oldestEditAt = null;
+        for (const entry of this.cache.values()) {
+            totalEdits += entry.editCount;
+            if (oldestEditAt === null || entry.editedAt < oldestEditAt) {
+                oldestEditAt = entry.editedAt;
+            }
+        }
+        return { size: this.cache.size, maxSize: this.maxSize, totalEdits, oldestEditAt };
+    }
+}
+exports.RecentEditsCache = RecentEditsCache;
+//# sourceMappingURL=recent-edits-cache.js.map

package/dist/indexing/recent-edits-cache.js.map

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package/dist/indexing/types.d.ts

@@ -0,0 +1,39 @@
+/**
+ * Indexing Types — interfaces for the codebase indexing system.
+ */
+export interface IndexTag {
+    directory: string;
+    branch: string;
+    artifactId: string;
+}
+export interface ChunkWithMeta {
+    content: string;
+    path: string;
+    startLine: number;
+    endLine: number;
+    cacheKey: string;
+}
+export interface SearchResult {
+    path: string;
+    content: string;
+    startLine: number;
+    endLine: number;
+    score: number;
+    source: "fts" | "embedding" | "recent";
+}
+export interface IndexingProgress {
+    phase: string;
+    current: number;
+    total: number;
+    message: string;
+}
+export type IndexingProgressCallback = (progress: IndexingProgress) => void;
+export interface IndexStats {
+    totalFiles: number;
+    totalChunks: number;
+    ftsEntries: number;
+    embeddingEntries: number;
+    lastIndexed: number;
+    indexSizeBytes: number;
+}
+//# sourceMappingURL=types.d.ts.map

package/dist/indexing/types.d.ts.map

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package/dist/indexing/types.js

@@ -0,0 +1,6 @@
+"use strict";
+/**
+ * Indexing Types — interfaces for the codebase indexing system.
+ */
+Object.defineProperty(exports, "__esModule", { value: true });
+//# sourceMappingURL=types.js.map

package/dist/indexing/types.js.map

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package/dist/mcp/index.d.ts

@@ -0,0 +1,33 @@
+/**
+ * MCP (Model Context Protocol) Server Support
+ *
+ * MCP is an open protocol that lets AI models connect to external
+ * data sources and tools. Think of it as "USB for AI" — a standard
+ * way to plug in capabilities.
+ *
+ * How it works:
+ *   1. User configures MCP servers in .cdoing/mcp.json or settings
+ *   2. On startup, we connect to each configured server
+ *   3. Discover available tools from each server
+ *   4. Register those tools so the agent can call them
+ *   5. Route tool calls through the MCP protocol
+ *
+ * Configuration format (.cdoing/mcp.json):
+ *   {
+ *     "servers": [
+ *       {
+ *         "name": "jira",
+ *         "command": "npx",
+ *         "args": ["-y", "@modelcontextprotocol/server-jira"],
+ *         "env": { "JIRA_URL": "https://..." }
+ *       }
+ *     ]
+ *   }
+ *
+ * Learning note: MCP uses JSON-RPC over stdio or SSE (Server-Sent Events).
+ * Each server is a separate process that we spawn and communicate with
+ * through its stdin/stdout. This isolation means a buggy MCP server
+ * can't crash the main agent.
+ */
+export { McpManager, type McpServerConfig, type McpTool } from "./manager";
+//# sourceMappingURL=index.d.ts.map