@ccp-nc/crystvis-js 0.5.0 → 0.6.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (179) hide show
  1. package/.github/dependabot.yml +69 -0
  2. package/.github/workflows/dependency-review.yml +91 -0
  3. package/.github/workflows/security-scan.yml +113 -0
  4. package/.github/workflows/test.yml +191 -0
  5. package/.github/workflows/update-dependencies.yml +214 -0
  6. package/CHANGELOG.md +36 -0
  7. package/LICENSE +0 -0
  8. package/README.html +0 -0
  9. package/README.md +5 -1
  10. package/audit.txt +37 -0
  11. package/changes.txt +27 -0
  12. package/docs/.nojekyll +0 -0
  13. package/docs/data/search.json +1 -0
  14. package/docs/fonts/Inconsolata-Regular.ttf +0 -0
  15. package/docs/fonts/OpenSans-Regular.ttf +0 -0
  16. package/docs/fonts/WorkSans-Bold.ttf +0 -0
  17. package/docs/index.html +10 -0
  18. package/docs/lib_model.module_js-AtomImage.html +3 -0
  19. package/docs/lib_model.module_js-BondImage.html +3 -0
  20. package/docs/lib_model.module_js-Model.html +3 -0
  21. package/docs/lib_model.module_js.html +3 -0
  22. package/docs/lib_modelview.module_js-ModelView.html +12 -0
  23. package/docs/lib_modelview.module_js.html +3 -0
  24. package/docs/lib_visualizer.module_js-CrystVis.html +3 -0
  25. package/docs/lib_visualizer.module_js.html +3 -0
  26. package/docs/model.js.html +2160 -0
  27. package/docs/modelview.js.html +449 -0
  28. package/docs/scripts/core.js +726 -0
  29. package/docs/scripts/core.min.js +23 -0
  30. package/docs/scripts/resize.js +90 -0
  31. package/docs/scripts/search.js +265 -0
  32. package/docs/scripts/search.min.js +6 -0
  33. package/docs/scripts/third-party/Apache-License-2.0.txt +202 -0
  34. package/docs/scripts/third-party/fuse.js +9 -0
  35. package/docs/scripts/third-party/hljs-line-num-original.js +369 -0
  36. package/docs/scripts/third-party/hljs-line-num.js +1 -0
  37. package/docs/scripts/third-party/hljs-original.js +5171 -0
  38. package/docs/scripts/third-party/hljs.js +1 -0
  39. package/docs/scripts/third-party/popper.js +5 -0
  40. package/docs/scripts/third-party/tippy.js +1 -0
  41. package/docs/scripts/third-party/tocbot.js +672 -0
  42. package/docs/scripts/third-party/tocbot.min.js +1 -0
  43. package/docs/styles/clean-jsdoc-theme-base.css +1159 -0
  44. package/docs/styles/clean-jsdoc-theme-dark.css +412 -0
  45. package/docs/styles/clean-jsdoc-theme-light.css +482 -0
  46. package/docs/styles/clean-jsdoc-theme-scrollbar.css +30 -0
  47. package/docs/styles/clean-jsdoc-theme-without-scrollbar.min.css +1 -0
  48. package/docs/styles/clean-jsdoc-theme.min.css +1 -0
  49. package/docs/tutorial-Events.html +13 -0
  50. package/docs/tutorial-Queries.html +16 -0
  51. package/docs/tutorial-ThreejsMigration.html +25 -0
  52. package/docs/visualizer.js.html +574 -0
  53. package/docs-tutorials/Events.md +0 -0
  54. package/docs-tutorials/Queries.md +0 -0
  55. package/docs-tutorials/ThreejsMigration.md +96 -0
  56. package/eslint.config.js +41 -0
  57. package/fonts/OpenSans/OFL.txt +0 -0
  58. package/fonts/OpenSans/OpenSans-Italic-VariableFont_wdth,wght.ttf +0 -0
  59. package/fonts/OpenSans/OpenSans-VariableFont_wdth,wght.ttf +0 -0
  60. package/fonts/OpenSans/README.txt +0 -0
  61. package/fonts/OpenSans/static/OpenSans/OpenSans-Bold.ttf +0 -0
  62. package/fonts/OpenSans/static/OpenSans/OpenSans-BoldItalic.ttf +0 -0
  63. package/fonts/OpenSans/static/OpenSans/OpenSans-ExtraBold.ttf +0 -0
  64. package/fonts/OpenSans/static/OpenSans/OpenSans-ExtraBoldItalic.ttf +0 -0
  65. package/fonts/OpenSans/static/OpenSans/OpenSans-Italic.ttf +0 -0
  66. package/fonts/OpenSans/static/OpenSans/OpenSans-Light.ttf +0 -0
  67. package/fonts/OpenSans/static/OpenSans/OpenSans-LightItalic.ttf +0 -0
  68. package/fonts/OpenSans/static/OpenSans/OpenSans-Medium.ttf +0 -0
  69. package/fonts/OpenSans/static/OpenSans/OpenSans-MediumItalic.ttf +0 -0
  70. package/fonts/OpenSans/static/OpenSans/OpenSans-Regular.ttf +0 -0
  71. package/fonts/OpenSans/static/OpenSans/OpenSans-SemiBold.ttf +0 -0
  72. package/fonts/OpenSans/static/OpenSans/OpenSans-SemiBoldItalic.ttf +0 -0
  73. package/fonts/OpenSans/static/OpenSans_Condensed/OpenSans_Condensed-Bold.ttf +0 -0
  74. package/fonts/OpenSans/static/OpenSans_Condensed/OpenSans_Condensed-BoldItalic.ttf +0 -0
  75. package/fonts/OpenSans/static/OpenSans_Condensed/OpenSans_Condensed-ExtraBold.ttf +0 -0
  76. package/fonts/OpenSans/static/OpenSans_Condensed/OpenSans_Condensed-ExtraBoldItalic.ttf +0 -0
  77. package/fonts/OpenSans/static/OpenSans_Condensed/OpenSans_Condensed-Italic.ttf +0 -0
  78. package/fonts/OpenSans/static/OpenSans_Condensed/OpenSans_Condensed-Light.ttf +0 -0
  79. package/fonts/OpenSans/static/OpenSans_Condensed/OpenSans_Condensed-LightItalic.ttf +0 -0
  80. package/fonts/OpenSans/static/OpenSans_Condensed/OpenSans_Condensed-Medium.ttf +0 -0
  81. package/fonts/OpenSans/static/OpenSans_Condensed/OpenSans_Condensed-MediumItalic.ttf +0 -0
  82. package/fonts/OpenSans/static/OpenSans_Condensed/OpenSans_Condensed-Regular.ttf +0 -0
  83. package/fonts/OpenSans/static/OpenSans_Condensed/OpenSans_Condensed-SemiBold.ttf +0 -0
  84. package/fonts/OpenSans/static/OpenSans_Condensed/OpenSans_Condensed-SemiBoldItalic.ttf +0 -0
  85. package/fonts/OpenSans/static/OpenSans_SemiCondensed/OpenSans_SemiCondensed-Bold.ttf +0 -0
  86. package/fonts/OpenSans/static/OpenSans_SemiCondensed/OpenSans_SemiCondensed-BoldItalic.ttf +0 -0
  87. package/fonts/OpenSans/static/OpenSans_SemiCondensed/OpenSans_SemiCondensed-ExtraBold.ttf +0 -0
  88. package/fonts/OpenSans/static/OpenSans_SemiCondensed/OpenSans_SemiCondensed-ExtraBoldItalic.ttf +0 -0
  89. package/fonts/OpenSans/static/OpenSans_SemiCondensed/OpenSans_SemiCondensed-Italic.ttf +0 -0
  90. package/fonts/OpenSans/static/OpenSans_SemiCondensed/OpenSans_SemiCondensed-Light.ttf +0 -0
  91. package/fonts/OpenSans/static/OpenSans_SemiCondensed/OpenSans_SemiCondensed-LightItalic.ttf +0 -0
  92. package/fonts/OpenSans/static/OpenSans_SemiCondensed/OpenSans_SemiCondensed-Medium.ttf +0 -0
  93. package/fonts/OpenSans/static/OpenSans_SemiCondensed/OpenSans_SemiCondensed-MediumItalic.ttf +0 -0
  94. package/fonts/OpenSans/static/OpenSans_SemiCondensed/OpenSans_SemiCondensed-Regular.ttf +0 -0
  95. package/fonts/OpenSans/static/OpenSans_SemiCondensed/OpenSans_SemiCondensed-SemiBold.ttf +0 -0
  96. package/fonts/OpenSans/static/OpenSans_SemiCondensed/OpenSans_SemiCondensed-SemiBoldItalic.ttf +0 -0
  97. package/fonts/Rubik/OFL.txt +0 -0
  98. package/fonts/Rubik/README.txt +0 -0
  99. package/fonts/Rubik/Rubik-Italic-VariableFont_wght.ttf +0 -0
  100. package/fonts/Rubik/Rubik-VariableFont_wght.ttf +0 -0
  101. package/fonts/Rubik/static/Rubik-Black.ttf +0 -0
  102. package/fonts/Rubik/static/Rubik-BlackItalic.ttf +0 -0
  103. package/fonts/Rubik/static/Rubik-Bold.ttf +0 -0
  104. package/fonts/Rubik/static/Rubik-BoldItalic.ttf +0 -0
  105. package/fonts/Rubik/static/Rubik-ExtraBold.ttf +0 -0
  106. package/fonts/Rubik/static/Rubik-ExtraBoldItalic.ttf +0 -0
  107. package/fonts/Rubik/static/Rubik-Italic.ttf +0 -0
  108. package/fonts/Rubik/static/Rubik-Light.ttf +0 -0
  109. package/fonts/Rubik/static/Rubik-LightItalic.ttf +0 -0
  110. package/fonts/Rubik/static/Rubik-Medium.ttf +0 -0
  111. package/fonts/Rubik/static/Rubik-MediumItalic.ttf +0 -0
  112. package/fonts/Rubik/static/Rubik-Regular.ttf +0 -0
  113. package/fonts/Rubik/static/Rubik-SemiBold.ttf +0 -0
  114. package/fonts/Rubik/static/Rubik-SemiBoldItalic.ttf +0 -0
  115. package/index.html +0 -0
  116. package/index.js +0 -0
  117. package/jsconf.json +0 -0
  118. package/lib/assets/fonts/bmpfonts.in.js +0 -0
  119. package/lib/assets/fonts/bmpfonts.js +0 -0
  120. package/lib/assets/fonts/font.js +33 -3
  121. package/lib/assets/fonts/index.js +0 -0
  122. package/lib/assets/fonts/threebmfont.js +2 -12
  123. package/lib/data.js +0 -0
  124. package/lib/formats/cell.js +0 -0
  125. package/lib/formats/cif.js +0 -0
  126. package/lib/formats/magres.js +0 -0
  127. package/lib/formats/xyz.js +149 -52
  128. package/lib/loader.js +28 -7
  129. package/lib/model.js +10 -3
  130. package/lib/modelview.js +30 -0
  131. package/lib/nmrdata.js +0 -0
  132. package/lib/orbit.js +77 -1
  133. package/lib/primitives/atoms.js +12 -7
  134. package/lib/primitives/cell.js +1 -1
  135. package/lib/primitives/dither.js +1 -1
  136. package/lib/primitives/ellipsoid.js +22 -8
  137. package/lib/primitives/geometries.js +3 -3
  138. package/lib/primitives/isosurface.js +2 -6
  139. package/lib/primitives/shapes.js +1 -1
  140. package/lib/primitives/sprites.js +9 -2
  141. package/lib/query.js +3 -28
  142. package/lib/render.js +40 -9
  143. package/lib/selbox.js +0 -0
  144. package/lib/shaders/aura.frag +0 -1
  145. package/lib/shaders/aura.vert +0 -1
  146. package/lib/shaders/dither.frag +0 -0
  147. package/lib/shaders/dither.vert +0 -0
  148. package/lib/shaders/index.in.js +0 -0
  149. package/lib/shaders/index.js +4 -4
  150. package/lib/shaders/msdf300.frag +0 -2
  151. package/lib/shaders/msdf300.vert +0 -2
  152. package/lib/tensor.js +0 -1
  153. package/lib/visualizer.js +5 -4
  154. package/outdated.txt +12 -0
  155. package/package.json +21 -22
  156. package/scripts/build-bundle.js +6 -2
  157. package/scripts/build-resources.js +0 -0
  158. package/scripts/plugins-shim.js +0 -0
  159. package/test/data/CHA.cif +0 -0
  160. package/test/data/H2O.xyz +0 -0
  161. package/test/data/H2_bound.xyz +0 -0
  162. package/test/data/bohr.cell +0 -0
  163. package/test/data/ethanol.cell +0 -0
  164. package/test/data/ethanol_with_tensors.xyz +33 -0
  165. package/test/data/example_single.cif +0 -0
  166. package/test/data/frac.cell +0 -0
  167. package/test/data/org.cif +0 -0
  168. package/test/data/pyridine.xyz +0 -0
  169. package/test/data/si8.xyz +0 -0
  170. package/test/loader.js +168 -8
  171. package/test/model.js +2 -4
  172. package/test/test-html/examples.js +0 -0
  173. package/test/test-html/index.html +0 -0
  174. package/tools/compile_colors.py +0 -0
  175. package/tools/compile_periodic.py +0 -0
  176. package/tools/ptable.json +0 -0
  177. package/tools/test +0 -0
  178. package/.eslintrc.json +0 -16
  179. package/.github/workflows/test-mocha.yml +0 -30

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