@ccp-nc/crystvis-js 0.4.13

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Files changed (100) hide show
  1. package/.eslintrc.json +16 -0
  2. package/.github/workflows/test-mocha.yml +30 -0
  3. package/.vscode/settings.json +4 -0
  4. package/LICENSE +21 -0
  5. package/README.html +1127 -0
  6. package/README.md +76 -0
  7. package/demo/demo.css +30 -0
  8. package/demo/index.html +76 -0
  9. package/demo/main.js +143 -0
  10. package/docs/.nojekyll +0 -0
  11. package/docs-tutorials/Events.md +57 -0
  12. package/docs-tutorials/Queries.md +50 -0
  13. package/fonts/Rubik/OFL.txt +93 -0
  14. package/fonts/Rubik/README.txt +77 -0
  15. package/fonts/Rubik/Rubik-Italic-VariableFont_wght.ttf +0 -0
  16. package/fonts/Rubik/Rubik-VariableFont_wght.ttf +0 -0
  17. package/fonts/Rubik/static/Rubik-Black.ttf +0 -0
  18. package/fonts/Rubik/static/Rubik-BlackItalic.ttf +0 -0
  19. package/fonts/Rubik/static/Rubik-Bold.ttf +0 -0
  20. package/fonts/Rubik/static/Rubik-BoldItalic.ttf +0 -0
  21. package/fonts/Rubik/static/Rubik-ExtraBold.ttf +0 -0
  22. package/fonts/Rubik/static/Rubik-ExtraBoldItalic.ttf +0 -0
  23. package/fonts/Rubik/static/Rubik-Italic.ttf +0 -0
  24. package/fonts/Rubik/static/Rubik-Light.ttf +0 -0
  25. package/fonts/Rubik/static/Rubik-LightItalic.ttf +0 -0
  26. package/fonts/Rubik/static/Rubik-Medium.ttf +0 -0
  27. package/fonts/Rubik/static/Rubik-MediumItalic.ttf +0 -0
  28. package/fonts/Rubik/static/Rubik-Regular.ttf +0 -0
  29. package/fonts/Rubik/static/Rubik-SemiBold.ttf +0 -0
  30. package/fonts/Rubik/static/Rubik-SemiBoldItalic.ttf +0 -0
  31. package/index.html +25 -0
  32. package/index.js +11 -0
  33. package/jsconf.json +14 -0
  34. package/lib/assets/fonts/Rubik-Medium.fnt +297 -0
  35. package/lib/assets/fonts/Rubik-Medium.png +0 -0
  36. package/lib/assets/fonts/bmpfonts.in.js +16 -0
  37. package/lib/assets/fonts/bmpfonts.js +9 -0
  38. package/lib/assets/fonts/font.js +82 -0
  39. package/lib/assets/fonts/index.js +14 -0
  40. package/lib/assets/fonts/threebmfont.js +28 -0
  41. package/lib/data.js +125 -0
  42. package/lib/formats/cell.js +114 -0
  43. package/lib/formats/cif.js +22 -0
  44. package/lib/formats/magres.js +337 -0
  45. package/lib/formats/xyz.js +124 -0
  46. package/lib/loader.js +87 -0
  47. package/lib/model.js +2076 -0
  48. package/lib/modelview.js +382 -0
  49. package/lib/nmrdata.js +2898 -0
  50. package/lib/orbit.js +1233 -0
  51. package/lib/primitives/atoms.js +261 -0
  52. package/lib/primitives/cell.js +160 -0
  53. package/lib/primitives/dither.js +156 -0
  54. package/lib/primitives/ellipsoid.js +183 -0
  55. package/lib/primitives/geometries.js +20 -0
  56. package/lib/primitives/index.js +48 -0
  57. package/lib/primitives/isosurface.js +171 -0
  58. package/lib/primitives/shapes.js +100 -0
  59. package/lib/primitives/sprites.js +172 -0
  60. package/lib/query.js +158 -0
  61. package/lib/render.js +440 -0
  62. package/lib/selbox.js +361 -0
  63. package/lib/shaders/aura.frag +26 -0
  64. package/lib/shaders/aura.vert +37 -0
  65. package/lib/shaders/dither.frag +42 -0
  66. package/lib/shaders/dither.vert +8 -0
  67. package/lib/shaders/index.in.js +17 -0
  68. package/lib/shaders/index.js +25 -0
  69. package/lib/shaders/msdf300.frag +25 -0
  70. package/lib/shaders/msdf300.vert +45 -0
  71. package/lib/tensor.js +227 -0
  72. package/lib/utils.js +168 -0
  73. package/lib/visualizer.js +480 -0
  74. package/package.json +106 -0
  75. package/scripts/build-bundle.js +17 -0
  76. package/scripts/build-fonts.js +43 -0
  77. package/scripts/build-resources.js +46 -0
  78. package/scripts/plugins-shim.js +10 -0
  79. package/test/chemdata.js +69 -0
  80. package/test/data/CHA.cif +74 -0
  81. package/test/data/H2O.xyz +8 -0
  82. package/test/data/H2_bound.xyz +4 -0
  83. package/test/data/ethanol.cell +25 -0
  84. package/test/data/ethanol.magres +238 -0
  85. package/test/data/example_single.cif +789 -0
  86. package/test/data/frac.cell +8 -0
  87. package/test/data/org.cif +427 -0
  88. package/test/data/pyridine.xyz +13 -0
  89. package/test/data/si8.xyz +10 -0
  90. package/test/loader.js +107 -0
  91. package/test/model.js +368 -0
  92. package/test/query.js +135 -0
  93. package/test/tensor.js +133 -0
  94. package/test/test-html/examples.js +1485 -0
  95. package/test/test-html/index.html +33 -0
  96. package/test/test-html/index.js +279 -0
  97. package/tools/compile_colors.py +120 -0
  98. package/tools/compile_periodic.py +96 -0
  99. package/tools/ptable.json +497 -0
  100. package/tools/test +5844 -0
@@ -0,0 +1,1485 @@
1
+ 'use strict';
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+
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+ // Convenience file to store the test input files as variables
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+ var exampleFiles = {};
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+
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+ exampleFiles['si8.xyz'] = `8
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+ Lattice="5.44 0.0 0.0 0.0 5.44 0.0 0.0 0.0 5.44" Properties=species:S:1:pos:R:3:spin:R:1 Time=0.0
8
+ Si 0.00000000 0.00000000 0.00000000 1.0
9
+ Si 1.36000000 1.36000000 1.36000000 0.0
10
+ Si 2.72000000 2.72000000 0.00000000 0.0
11
+ Si 4.08000000 4.08000000 1.36000000 0.0
12
+ Si 2.72000000 0.00000000 2.72000000 0.0
13
+ Si 4.08000000 1.36000000 4.08000000 0.0
14
+ Si 0.00000000 2.72000000 2.72000000 0.0
15
+ Si 1.36000000 4.08000000 4.08000000 0.0`;
16
+
17
+ exampleFiles['H2O.xyz'] = `6
18
+ Lattice="10.0 0.0 0.0 0.0 10.0 0.0 0.0 0.0 10.0" Properties=species:S:1:pos:R:3 pbc="T T T"
19
+ O 0.00000000 0.00000000 0.11926200
20
+ H 0.00000000 0.76323900 -0.47704700
21
+ H 0.00000000 -0.76323900 -0.47704700
22
+ O 5.00000000 0.00000000 0.11926200
23
+ H 5.00000000 0.76323900 9.522953
24
+ H 5.00000000 9.236761 9.522953`;
25
+
26
+ exampleFiles['org.cif'] = `#------------------------------------------------------------------------------
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+ #$Date: 2016-02-18 17:37:37 +0200 (Thu, 18 Feb 2016) $
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+ #$Revision: 176729 $
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+ #$URL: svn://www.crystallography.net/cod/cif/1/50/19/1501936.cif $
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+ #------------------------------------------------------------------------------
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+ #
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+ # This file is available in the Crystallography Open Database (COD),
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+ # http://www.crystallography.net/
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+ #
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+ # All data on this site have been placed in the public domain by the
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+ # contributors.
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+ #
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+ data_1501936
39
+ loop_
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+ _publ_author_name
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+ 'Stewart, Craig'
42
+ 'McDonald, Robert'
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+ 'West, F. G.'
44
+ _publ_section_title
45
+ ;
46
+ Expedient route to the tigliane-daphnane skeleton via oxonium ylide
47
+ [1,2]-shift.
48
+ ;
49
+ _journal_issue 4
50
+ _journal_name_full 'Organic letters'
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+ _journal_page_first 720
52
+ _journal_page_last 723
53
+ _journal_paper_doi 10.1021/ol102953s
54
+ _journal_volume 13
55
+ _journal_year 2011
56
+ _chemical_formula_moiety 'C21 H26 O4'
57
+ _chemical_formula_sum 'C21 H26 O4'
58
+ _chemical_formula_weight 342.42
59
+ _chemical_name_systematic
60
+ ;
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+ ?
62
+ ;
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+ _space_group_IT_number 2
64
+ _symmetry_cell_setting triclinic
65
+ _symmetry_space_group_name_Hall '-P 1'
66
+ _symmetry_space_group_name_H-M 'P -1'
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+ _atom_sites_solution_hydrogens geom
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+ _atom_sites_solution_primary direct
69
+ _atom_sites_solution_secondary difmap
70
+ _audit_creation_method SHELXL-97
71
+ _cell_angle_alpha 79.9846(4)
72
+ _cell_angle_beta 82.2194(4)
73
+ _cell_angle_gamma 77.7988(4)
74
+ _cell_formula_units_Z 2
75
+ _cell_length_a 8.2302(3)
76
+ _cell_length_b 8.2837(3)
77
+ _cell_length_c 13.1837(4)
78
+ _cell_measurement_reflns_used 7347
79
+ _cell_measurement_temperature 173(2)
80
+ _cell_measurement_theta_max 27.48
81
+ _cell_measurement_theta_min 2.54
82
+ _cell_volume 860.57(5)
83
+ _computing_cell_refinement 'Bruker SAINT'
84
+ _computing_data_collection 'Bruker APEX2'
85
+ _computing_data_reduction 'Bruker SAINT'
86
+ _computing_molecular_graphics 'Bruker SHELXTL'
87
+ _computing_publication_material 'Bruker SHELXTL'
88
+ _computing_structure_refinement 'SHELXL-97 (Sheldrick, 2008)'
89
+ _computing_structure_solution 'SHELXD (Schneider & Sheldrick, 2002)'
90
+ _diffrn_ambient_temperature 173(2)
91
+ _diffrn_measured_fraction_theta_full 0.986
92
+ _diffrn_measured_fraction_theta_max 0.986
93
+ _diffrn_measurement_device_type 'Bruker APEX-II CCD'
94
+ _diffrn_measurement_method '\f and \w scans'
95
+ _diffrn_radiation_monochromator graphite
96
+ _diffrn_radiation_source 'fine-focus sealed tube'
97
+ _diffrn_radiation_type MoK\a
98
+ _diffrn_radiation_wavelength 0.71073
99
+ _diffrn_reflns_av_R_equivalents 0.0099
100
+ _diffrn_reflns_av_sigmaI/netI 0.0146
101
+ _diffrn_reflns_limit_h_max 10
102
+ _diffrn_reflns_limit_h_min -10
103
+ _diffrn_reflns_limit_k_max 10
104
+ _diffrn_reflns_limit_k_min -10
105
+ _diffrn_reflns_limit_l_max 17
106
+ _diffrn_reflns_limit_l_min -17
107
+ _diffrn_reflns_number 7543
108
+ _diffrn_reflns_theta_full 27.48
109
+ _diffrn_reflns_theta_max 27.48
110
+ _diffrn_reflns_theta_min 1.58
111
+ _exptl_absorpt_coefficient_mu 0.090
112
+ _exptl_absorpt_correction_T_max 0.9723
113
+ _exptl_absorpt_correction_T_min 0.9471
114
+ _exptl_absorpt_correction_type integration
115
+ _exptl_absorpt_process_details 'SADABS (Sheldrick, 2008)'
116
+ _exptl_crystal_colour colourless
117
+ _exptl_crystal_density_diffrn 1.321
118
+ _exptl_crystal_density_method 'not measured'
119
+ _exptl_crystal_description prism
120
+ _exptl_crystal_F_000 368
121
+ _exptl_crystal_size_max 0.61
122
+ _exptl_crystal_size_mid 0.35
123
+ _exptl_crystal_size_min 0.31
124
+ _refine_diff_density_max 0.347
125
+ _refine_diff_density_min -0.262
126
+ _refine_diff_density_rms 0.054
127
+ _refine_ls_extinction_method none
128
+ _refine_ls_goodness_of_fit_ref 1.029
129
+ _refine_ls_hydrogen_treatment constr
130
+ _refine_ls_matrix_type full
131
+ _refine_ls_number_parameters 227
132
+ _refine_ls_number_reflns 3894
133
+ _refine_ls_number_restraints 0
134
+ _refine_ls_restrained_S_all 1.029
135
+ _refine_ls_R_factor_all 0.0447
136
+ _refine_ls_R_factor_gt 0.0418
137
+ _refine_ls_shift/su_max 0.000
138
+ _refine_ls_shift/su_mean 0.000
139
+ _refine_ls_structure_factor_coef Fsqd
140
+ _refine_ls_weighting_details
141
+ 'calc w=1/[\s^2^(Fo^2^)+(0.0666P)^2^+0.2631P] where P=(Fo^2^+2Fc^2^)/3'
142
+ _refine_ls_weighting_scheme calc
143
+ _refine_ls_wR_factor_gt 0.1105
144
+ _refine_ls_wR_factor_ref 0.1138
145
+ _reflns_number_gt 3564
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+ _reflns_number_total 3894
147
+ _reflns_threshold_expression I>2\s(I)
148
+ _cod_data_source_file ol102953s_si_002.cif
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+ _cod_data_source_block 16
150
+ _cod_depositor_comments
151
+ ;
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+ The following automatic conversions were performed:
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+
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+ '_symmetry_cell_setting' value 'Triclinic' changed to 'triclinic'
155
+ according to /home/saulius/struct/CIF-dictionaries/cif_core.dic
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+ dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29.
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+
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+ Automatic conversion script
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+ Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana
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+ ;
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+ _cod_database_code 1501936
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+ loop_
163
+ _symmetry_equiv_pos_as_xyz
164
+ 'x, y, z'
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+ '-x, -y, -z'
166
+ loop_
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+ _atom_site_label
168
+ _atom_site_type_symbol
169
+ _atom_site_fract_x
170
+ _atom_site_fract_y
171
+ _atom_site_fract_z
172
+ _atom_site_U_iso_or_equiv
173
+ _atom_site_adp_type
174
+ _atom_site_occupancy
175
+ _atom_site_symmetry_multiplicity
176
+ _atom_site_calc_flag
177
+ _atom_site_refinement_flags
178
+ O1 O 0.43325(9) 0.00289(10) 0.22205(6) 0.02475(18) Uani 1 1 d .
179
+ O2 O 0.25690(11) 0.06668(12) 0.48190(6) 0.0318(2) Uani 1 1 d .
180
+ H2O H 0.1572 0.0969 0.4682 0.048 Uiso 1 1 calc R
181
+ O3 O 0.03180(9) 0.07400(10) 0.35068(6) 0.02243(18) Uani 1 1 d .
182
+ O4 O -0.05742(9) 0.12277(10) 0.18848(6) 0.02204(18) Uani 1 1 d .
183
+ C1 C 0.23130(16) 0.31699(15) 0.05350(9) 0.0292(3) Uani 1 1 d .
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+ H1A H 0.1668 0.2801 0.0066 0.035 Uiso 1 1 calc R
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+ H1B H 0.1966 0.4394 0.0512 0.035 Uiso 1 1 calc R
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+ C2 C 0.41826(17) 0.26953(18) 0.02240(10) 0.0362(3) Uani 1 1 d .
187
+ H2A H 0.4570 0.3551 -0.0324 0.043 Uiso 1 1 calc R
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+ H2B H 0.4466 0.1600 -0.0026 0.043 Uiso 1 1 calc R
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+ C3 C 0.49496(16) 0.26142(18) 0.12251(10) 0.0346(3) Uani 1 1 d .
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+ H3A H 0.5020 0.3746 0.1340 0.041 Uiso 1 1 calc R
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+ H3B H 0.6086 0.1915 0.1204 0.041 Uiso 1 1 calc R
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+ C4 C 0.37765(13) 0.18364(14) 0.20769(9) 0.0236(2) Uani 1 1 d .
193
+ C5 C 0.37169(15) 0.22671(15) 0.31723(9) 0.0278(2) Uani 1 1 d .
194
+ H5A H 0.2716 0.3123 0.3326 0.033 Uiso 1 1 calc R
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+ H5B H 0.4728 0.2685 0.3250 0.033 Uiso 1 1 calc R
196
+ C6 C 0.36401(14) 0.05939(14) 0.38863(9) 0.0249(2) Uani 1 1 d .
197
+ H6 H 0.4795 0.0130 0.4087 0.030 Uiso 1 1 calc R
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+ C7 C 0.33164(13) -0.05107(13) 0.31315(8) 0.0221(2) Uani 1 1 d .
199
+ H7 H 0.3766 -0.1709 0.3390 0.026 Uiso 1 1 calc R
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+ C8 C 0.14955(13) -0.03284(13) 0.28705(8) 0.0200(2) Uani 1 1 d .
201
+ C9 C 0.09823(15) -0.20349(14) 0.30165(9) 0.0274(2) Uani 1 1 d .
202
+ H9A H 0.1342 -0.2692 0.3677 0.033 Uiso 1 1 calc R
203
+ H9B H -0.0251 -0.1870 0.3061 0.033 Uiso 1 1 calc R
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+ C10 C 0.17450(18) -0.30157(15) 0.21329(10) 0.0335(3) Uani 1 1 d .
205
+ H10A H 0.2980 -0.3217 0.2093 0.040 Uiso 1 1 calc R
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+ H10B H 0.1393 -0.4111 0.2257 0.040 Uiso 1 1 calc R
207
+ C11 C 0.11557(18) -0.20110(15) 0.11223(10) 0.0320(3) Uani 1 1 d .
208
+ H11A H -0.0079 -0.1821 0.1166 0.038 Uiso 1 1 calc R
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+ H11B H 0.1615 -0.2652 0.0546 0.038 Uiso 1 1 calc R
210
+ C12 C 0.17208(14) -0.03337(14) 0.09030(8) 0.0243(2) Uani 1 1 d .
211
+ H12A H 0.2952 -0.0536 0.0750 0.029 Uiso 1 1 calc R
212
+ H12B H 0.1235 0.0326 0.0277 0.029 Uiso 1 1 calc R
213
+ C13 C 0.12298(12) 0.06918(12) 0.17872(8) 0.0190(2) Uani 1 1 d .
214
+ C14 C 0.20338(13) 0.22587(13) 0.16509(8) 0.0210(2) Uani 1 1 d .
215
+ H14 H 0.1286 0.3076 0.2067 0.025 Uiso 1 1 calc R
216
+ C15 C -0.11096(13) 0.13931(14) 0.29369(8) 0.0222(2) Uani 1 1 d .
217
+ H15 H -0.1989 0.0710 0.3197 0.027 Uiso 1 1 calc R
218
+ C16 C -0.17827(13) 0.31719(14) 0.31250(9) 0.0246(2) Uani 1 1 d .
219
+ C17 C -0.21011(15) 0.44865(15) 0.23268(10) 0.0285(2) Uani 1 1 d .
220
+ H17 H -0.1901 0.4287 0.1628 0.034 Uiso 1 1 calc R
221
+ C18 C -0.27164(16) 0.61039(16) 0.25492(11) 0.0356(3) Uani 1 1 d .
222
+ H18 H -0.2950 0.7001 0.2001 0.043 Uiso 1 1 calc R
223
+ C19 C -0.29871(16) 0.64062(17) 0.35582(12) 0.0402(3) Uani 1 1 d .
224
+ H19 H -0.3359 0.7515 0.3706 0.048 Uiso 1 1 calc R
225
+ C20 C -0.2715(2) 0.5084(2) 0.43574(13) 0.0532(4) Uani 1 1 d .
226
+ H20 H -0.2928 0.5283 0.5056 0.064 Uiso 1 1 calc R
227
+ C21 C -0.2133(2) 0.34710(19) 0.41411(11) 0.0450(4) Uani 1 1 d .
228
+ H21 H -0.1973 0.2566 0.4692 0.054 Uiso 1 1 calc R
229
+ loop_
230
+ _atom_site_aniso_label
231
+ _atom_site_aniso_U_11
232
+ _atom_site_aniso_U_22
233
+ _atom_site_aniso_U_33
234
+ _atom_site_aniso_U_23
235
+ _atom_site_aniso_U_13
236
+ _atom_site_aniso_U_12
237
+ O1 0.0204(4) 0.0269(4) 0.0259(4) -0.0057(3) -0.0017(3) -0.0012(3)
238
+ O2 0.0315(4) 0.0438(5) 0.0215(4) -0.0075(4) -0.0049(3) -0.0067(4)
239
+ O3 0.0201(4) 0.0270(4) 0.0189(4) -0.0043(3) -0.0034(3) 0.0000(3)
240
+ O4 0.0195(4) 0.0265(4) 0.0204(4) -0.0038(3) -0.0048(3) -0.0031(3)
241
+ C1 0.0362(6) 0.0255(5) 0.0262(6) 0.0017(4) -0.0051(5) -0.0101(5)
242
+ C2 0.0391(7) 0.0386(7) 0.0290(6) 0.0001(5) 0.0050(5) -0.0127(5)
243
+ C3 0.0282(6) 0.0416(7) 0.0349(6) -0.0006(5) 0.0006(5) -0.0155(5)
244
+ C4 0.0217(5) 0.0248(5) 0.0253(5) -0.0034(4) -0.0030(4) -0.0068(4)
245
+ C5 0.0307(6) 0.0285(6) 0.0277(6) -0.0061(4) -0.0078(4) -0.0092(4)
246
+ C6 0.0234(5) 0.0292(6) 0.0230(5) -0.0055(4) -0.0074(4) -0.0028(4)
247
+ C7 0.0214(5) 0.0223(5) 0.0218(5) -0.0028(4) -0.0056(4) -0.0008(4)
248
+ C8 0.0213(5) 0.0196(5) 0.0191(5) -0.0029(4) -0.0035(4) -0.0031(4)
249
+ C9 0.0341(6) 0.0219(5) 0.0272(6) 0.0021(4) -0.0083(5) -0.0093(4)
250
+ C10 0.0480(7) 0.0194(5) 0.0349(6) -0.0034(5) -0.0132(5) -0.0058(5)
251
+ C11 0.0472(7) 0.0235(6) 0.0294(6) -0.0073(4) -0.0117(5) -0.0083(5)
252
+ C12 0.0299(5) 0.0235(5) 0.0205(5) -0.0059(4) -0.0041(4) -0.0040(4)
253
+ C13 0.0188(5) 0.0189(5) 0.0196(5) -0.0026(4) -0.0039(4) -0.0027(4)
254
+ C14 0.0219(5) 0.0200(5) 0.0217(5) -0.0024(4) -0.0034(4) -0.0051(4)
255
+ C15 0.0188(5) 0.0261(5) 0.0212(5) -0.0015(4) -0.0033(4) -0.0038(4)
256
+ C16 0.0187(5) 0.0278(5) 0.0268(5) -0.0059(4) -0.0028(4) -0.0020(4)
257
+ C17 0.0250(5) 0.0286(6) 0.0312(6) -0.0035(5) -0.0044(4) -0.0032(4)
258
+ C18 0.0289(6) 0.0276(6) 0.0484(8) -0.0032(5) -0.0076(5) -0.0008(5)
259
+ C19 0.0284(6) 0.0338(7) 0.0599(9) -0.0201(6) -0.0106(6) 0.0049(5)
260
+ C20 0.0639(10) 0.0522(9) 0.0397(8) -0.0233(7) -0.0113(7) 0.0147(8)
261
+ C21 0.0585(9) 0.0408(8) 0.0282(7) -0.0085(6) -0.0068(6) 0.0113(6)
262
+ loop_
263
+ _atom_type_symbol
264
+ _atom_type_description
265
+ _atom_type_scat_dispersion_real
266
+ _atom_type_scat_dispersion_imag
267
+ _atom_type_scat_source
268
+ C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
269
+ H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
270
+ O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
271
+ loop_
272
+ _geom_angle_atom_site_label_1
273
+ _geom_angle_atom_site_label_2
274
+ _geom_angle_atom_site_label_3
275
+ _geom_angle
276
+ C7 O1 C4 102.79(8)
277
+ C15 O3 C8 106.30(7)
278
+ C15 O4 C13 107.90(7)
279
+ C2 C1 C14 105.14(9)
280
+ C1 C2 C3 103.37(10)
281
+ C2 C3 C4 105.12(10)
282
+ O1 C4 C3 108.63(9)
283
+ O1 C4 C5 103.13(9)
284
+ C3 C4 C5 117.53(10)
285
+ O1 C4 C14 108.27(8)
286
+ C3 C4 C14 105.59(9)
287
+ C5 C4 C14 113.35(9)
288
+ C4 C5 C6 103.88(9)
289
+ O2 C6 C5 116.61(10)
290
+ O2 C6 C7 117.45(10)
291
+ C5 C6 C7 102.19(9)
292
+ O1 C7 C6 100.99(9)
293
+ O1 C7 C8 109.50(8)
294
+ C6 C7 C8 118.01(9)
295
+ O3 C8 C9 108.90(9)
296
+ O3 C8 C13 99.92(8)
297
+ C9 C8 C13 113.17(9)
298
+ O3 C8 C7 111.63(8)
299
+ C9 C8 C7 111.12(9)
300
+ C13 C8 C7 111.61(8)
301
+ C10 C9 C8 112.28(10)
302
+ C11 C10 C9 108.77(10)
303
+ C10 C11 C12 110.83(10)
304
+ C13 C12 C11 114.11(9)
305
+ O4 C13 C12 108.21(8)
306
+ O4 C13 C8 100.85(8)
307
+ C12 C13 C8 114.25(8)
308
+ O4 C13 C14 108.43(8)
309
+ C12 C13 C14 114.66(9)
310
+ C8 C13 C14 109.39(8)
311
+ C1 C14 C13 116.60(9)
312
+ C1 C14 C4 105.76(9)
313
+ C13 C14 C4 111.64(8)
314
+ O4 C15 O3 107.05(8)
315
+ O4 C15 C16 114.21(9)
316
+ O3 C15 C16 108.24(8)
317
+ C17 C16 C21 119.43(11)
318
+ C17 C16 C15 122.58(10)
319
+ C21 C16 C15 117.97(11)
320
+ C16 C17 C18 119.94(12)
321
+ C19 C18 C17 120.39(12)
322
+ C18 C19 C20 119.60(13)
323
+ C19 C20 C21 120.19(14)
324
+ C16 C21 C20 120.35(13)
325
+ loop_
326
+ _geom_bond_atom_site_label_1
327
+ _geom_bond_atom_site_label_2
328
+ _geom_bond_distance
329
+ O1 C7 1.4286(13)
330
+ O1 C4 1.4568(13)
331
+ O2 C6 1.4152(14)
332
+ O3 C15 1.4376(12)
333
+ O3 C8 1.4498(12)
334
+ O4 C15 1.4184(13)
335
+ O4 C13 1.4518(12)
336
+ C1 C2 1.5232(18)
337
+ C1 C14 1.5436(15)
338
+ C2 C3 1.5236(19)
339
+ C3 C4 1.5252(16)
340
+ C4 C5 1.5387(15)
341
+ C4 C14 1.5597(14)
342
+ C5 C6 1.5422(16)
343
+ C6 C7 1.5459(15)
344
+ C7 C8 1.5534(14)
345
+ C8 C9 1.5328(15)
346
+ C8 C13 1.5454(14)
347
+ C9 C10 1.5254(17)
348
+ C10 C11 1.5237(17)
349
+ C11 C12 1.5256(16)
350
+ C12 C13 1.5217(14)
351
+ C13 C14 1.5507(14)
352
+ C15 C16 1.5115(15)
353
+ C16 C17 1.3847(16)
354
+ C16 C21 1.3854(17)
355
+ C17 C18 1.3954(17)
356
+ C18 C19 1.376(2)
357
+ C19 C20 1.385(2)
358
+ C20 C21 1.386(2)
359
+ loop_
360
+ _geom_hbond_atom_site_label_D
361
+ _geom_hbond_atom_site_label_H
362
+ _geom_hbond_atom_site_label_A
363
+ _geom_hbond_distance_DH
364
+ _geom_hbond_distance_HA
365
+ _geom_hbond_distance_DA
366
+ _geom_hbond_angle_DHA
367
+ O2 H2O O3 0.84 2.03 2.6856(11) 134.4
368
+ loop_
369
+ _geom_torsion_atom_site_label_1
370
+ _geom_torsion_atom_site_label_2
371
+ _geom_torsion_atom_site_label_3
372
+ _geom_torsion_atom_site_label_4
373
+ _geom_torsion
374
+ C14 C1 C2 C3 -36.03(12)
375
+ C1 C2 C3 C4 38.59(13)
376
+ C7 O1 C4 C3 171.08(9)
377
+ C7 O1 C4 C5 45.66(10)
378
+ C7 O1 C4 C14 -74.71(10)
379
+ C2 C3 C4 O1 90.00(11)
380
+ C2 C3 C4 C5 -153.50(11)
381
+ C2 C3 C4 C14 -25.95(13)
382
+ O1 C4 C5 C6 -19.76(11)
383
+ C3 C4 C5 C6 -139.21(10)
384
+ C14 C4 C5 C6 97.07(10)
385
+ C4 C5 C6 O2 -140.12(9)
386
+ C4 C5 C6 C7 -10.64(11)
387
+ C4 O1 C7 C6 -52.55(9)
388
+ C4 O1 C7 C8 72.65(10)
389
+ O2 C6 C7 O1 167.08(9)
390
+ C5 C6 C7 O1 38.13(10)
391
+ O2 C6 C7 C8 47.83(13)
392
+ C5 C6 C7 C8 -81.11(11)
393
+ C15 O3 C8 C9 -81.23(10)
394
+ C15 O3 C8 C13 37.59(9)
395
+ C15 O3 C8 C7 155.72(8)
396
+ O1 C7 C8 O3 -122.30(9)
397
+ C6 C7 C8 O3 -7.63(13)
398
+ O1 C7 C8 C9 115.92(10)
399
+ C6 C7 C8 C9 -129.40(10)
400
+ O1 C7 C8 C13 -11.42(12)
401
+ C6 C7 C8 C13 103.25(11)
402
+ O3 C8 C9 C10 160.32(9)
403
+ C13 C8 C9 C10 50.17(12)
404
+ C7 C8 C9 C10 -76.32(11)
405
+ C8 C9 C10 C11 -59.99(13)
406
+ C9 C10 C11 C12 60.93(14)
407
+ C10 C11 C12 C13 -53.49(14)
408
+ C15 O4 C13 C12 150.64(9)
409
+ C15 O4 C13 C8 30.42(9)
410
+ C15 O4 C13 C14 -84.43(9)
411
+ C11 C12 C13 O4 -68.27(11)
412
+ C11 C12 C13 C8 43.17(13)
413
+ C11 C12 C13 C14 170.58(9)
414
+ O3 C8 C13 O4 -40.93(9)
415
+ C9 C8 C13 O4 74.70(10)
416
+ C7 C8 C13 O4 -159.07(8)
417
+ O3 C8 C13 C12 -156.73(8)
418
+ C9 C8 C13 C12 -41.11(12)
419
+ C7 C8 C13 C12 85.12(11)
420
+ O3 C8 C13 C14 73.20(9)
421
+ C9 C8 C13 C14 -171.18(9)
422
+ C7 C8 C13 C14 -44.95(11)
423
+ C2 C1 C14 C13 -104.72(11)
424
+ C2 C1 C14 C4 20.01(12)
425
+ O4 C13 C14 C1 -86.70(11)
426
+ C12 C13 C14 C1 34.33(13)
427
+ C8 C13 C14 C1 164.18(9)
428
+ O4 C13 C14 C4 151.61(8)
429
+ C12 C13 C14 C4 -87.37(11)
430
+ C8 C13 C14 C4 42.48(11)
431
+ O1 C4 C14 C1 -112.58(9)
432
+ C3 C4 C14 C1 3.62(12)
433
+ C5 C4 C14 C1 133.64(10)
434
+ O1 C4 C14 C13 15.19(11)
435
+ C3 C4 C14 C13 131.38(10)
436
+ C5 C4 C14 C13 -98.59(10)
437
+ C13 O4 C15 O3 -7.90(10)
438
+ C13 O4 C15 C16 111.90(9)
439
+ C8 O3 C15 O4 -20.10(10)
440
+ C8 O3 C15 C16 -143.65(9)
441
+ O4 C15 C16 C17 9.96(15)
442
+ O3 C15 C16 C17 129.09(11)
443
+ O4 C15 C16 C21 -171.89(11)
444
+ O3 C15 C16 C21 -52.76(14)
445
+ C21 C16 C17 C18 2.13(19)
446
+ C15 C16 C17 C18 -179.75(10)
447
+ C16 C17 C18 C19 0.94(19)
448
+ C17 C18 C19 C20 -2.8(2)
449
+ C18 C19 C20 C21 1.6(3)
450
+ C17 C16 C21 C20 -3.3(2)
451
+ C15 C16 C21 C20 178.47(14)
452
+ C19 C20 C21 C16 1.5(3)
453
+ `
454
+
455
+ exampleFiles['example_single.cif'] = `#########################################################################
456
+ # #
457
+ # THIS IS AN EXAMPLE OF A CIF REPORTING A SINGLE #
458
+ # STRUCTURE AND INCLUDING USER-DEFINABLE TEXT #
459
+ # SECTIONS #
460
+ # #
461
+ #########################################################################
462
+
463
+ data_global
464
+
465
+ loop_
466
+ _publ_body_element
467
+ _publ_body_title
468
+ _publ_body_contents
469
+
470
+ section .
471
+ ;
472
+ ?
473
+ ;
474
+ section
475
+ ;
476
+ Introduction
477
+ ;
478
+ ;\
479
+ INTRODUCTION TEXT HERE
480
+ ;
481
+ section Experimental
482
+ ;
483
+ ?
484
+ ;
485
+ subsection 'Synthesis and crystallization'
486
+ ;
487
+ TEXT HERE
488
+ ;
489
+
490
+ subsection Refinement
491
+ ;
492
+ TEXT HERE
493
+ ;
494
+
495
+ section 'Results and discussion'
496
+ ;
497
+ TEXT HERE
498
+ ;
499
+
500
+ #=============================================================
501
+
502
+ _audit_creation_date 'June 17, 2013'
503
+ _audit_creation_method 'from SHELXL-97'
504
+ _audit_update_record
505
+ ;
506
+ ;
507
+
508
+ #===================================================================
509
+ # 1. SUBMISSION DETAILS
510
+
511
+ _publ_contact_author_name 'NAME'
512
+ _publ_contact_author_address
513
+ ;
514
+ ADDRESS
515
+ ;
516
+
517
+ _publ_contact_author_phone ?
518
+ _publ_contact_author_fax ?
519
+ _publ_contact_author_email ?
520
+
521
+ _publ_requested_journal 'Acta Crystallographica C'
522
+ _publ_requested_category FA
523
+ _publ_requested_coeditor_name ?
524
+
525
+ _publ_contact_letter
526
+ ;
527
+ ;
528
+
529
+ #=====================================================================
530
+ # 2. PROCESSING SUMMARY (IUCr Office Use Only)
531
+
532
+ _journal_date_recd_electronic ?
533
+ _journal_date_to_coeditor ?
534
+ _journal_date_from_coeditor ?
535
+ _journal_date_accepted ?
536
+ _journal_date_printers_first ?
537
+ _journal_date_printers_final ?
538
+ _journal_date_proofs_out ?
539
+ _journal_date_proofs_in ?
540
+ _journal_coeditor_name ?
541
+ _journal_coeditor_code ?
542
+ _journal_paper_doi ?
543
+ _journal_paper_category FA
544
+ _journal_coeditor_notes ?
545
+ _journal_techeditor_code ?
546
+ _iucr_compatibility_tag ACTA95
547
+ _journal_techeditor_notes ?
548
+ _journal_coden_ASTM ACSCGG
549
+ _journal_name_full 'Acta Crystallographica, Section C'
550
+ _journal_year ?
551
+ _journal_volume ?
552
+ _journal_issue ?
553
+ _journal_page_first ?
554
+ _journal_page_last ?
555
+ _journal_suppl_publ_number ?
556
+ _journal_suppl_publ_pages ?
557
+
558
+ #=====================================================================
559
+ # 3. TITLE AND AUTHOR LIST
560
+
561
+ _publ_section_title
562
+ ;
563
+ TITLE
564
+ ;
565
+
566
+ loop_
567
+ _publ_author_name
568
+ _publ_author_address
569
+ _publ_author_email
570
+ _publ_author_footnote
571
+ 'NAME'
572
+ ;
573
+ ADDRESS
574
+ ;
575
+ ? ?
576
+
577
+ #======================================================================
578
+ # 4. TEXT
579
+
580
+ _publ_section_synopsis
581
+ ;
582
+ TEXT HERE
583
+ ;
584
+
585
+ _publ_section_keywords
586
+ ;
587
+ TEXT HERE
588
+ ;
589
+
590
+ _publ_section_abstract
591
+ ;
592
+ TEXT HERE
593
+ ;
594
+
595
+ _publ_section_references
596
+ ;
597
+ REFERENCES HERE
598
+ ;
599
+
600
+ _publ_section_figure_captions
601
+ ;
602
+ FIGURE CAPTIONS HERE
603
+ ;
604
+
605
+ _publ_section_table_legends
606
+ ;
607
+ TABLE CAPTIONS HERE
608
+ ;
609
+
610
+ _publ_section_acknowledgements
611
+ ;
612
+ ACKNOWLEDGEMENTS HERE
613
+ ;
614
+
615
+ #=====================================================================
616
+
617
+ data_I
618
+
619
+ #=====================================================================
620
+ # 5. Chemical Data
621
+
622
+ _chemical_name_systematic
623
+ ;\
624
+ (6<i>R</i>*,11<i>R</i>*)-5-Acetyl-11-ethyl-6,11-dihydro-5<i>H</i>-\
625
+ dibenzo[<i>b</i>,<i>e</i>]azepine-6-carboxylic acid
626
+ ;
627
+ _chemical_name_common ?
628
+ _chemical_melting_point ?
629
+ _chemical_formula_moiety 'C19 H19 N O3'
630
+ _chemical_formula_sum 'C19 H19 N O3'
631
+ _chemical_formula_weight 309.35
632
+ _chemical_compound_source 'synthesised by authors, see text'
633
+ _chemical_formula_iupac 'C19 H19 N O3'
634
+
635
+ loop_
636
+ _atom_type_symbol
637
+ _atom_type_description
638
+ _atom_type_scat_dispersion_real
639
+ _atom_type_scat_dispersion_imag
640
+ _atom_type_scat_source
641
+ 'C' 'C' 0.0033 0.0016
642
+ 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
643
+ 'H' 'H' 0.0000 0.0000
644
+ 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
645
+ 'N' 'N' 0.0061 0.0033
646
+ 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
647
+ 'O' 'O' 0.0106 0.0060
648
+ 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
649
+
650
+
651
+ _symmetry_cell_setting monoclinic
652
+ _symmetry_space_group_name_H-M 'P 21'
653
+ _symmetry_space_group_name_Hall 'P 2yb'
654
+
655
+ loop_
656
+ _symmetry_equiv_pos_as_xyz
657
+ 'x, y, z'
658
+ '-x, y+1/2, -z'
659
+
660
+ _cell_length_a 8.8053(3)
661
+ _cell_length_b 10.9821(4)
662
+ _cell_length_c 9.0080(6)
663
+ _cell_angle_alpha 90.00
664
+ _cell_angle_beta 118.510(3)
665
+ _cell_angle_gamma 90.00
666
+ _cell_volume 765.45(6)
667
+ _cell_formula_units_Z 2
668
+ _cell_measurement_temperature 120(2)
669
+ _cell_measurement_reflns_used 1853
670
+ _cell_measurement_theta_min 3.20
671
+ _cell_measurement_theta_max 27.50
672
+
673
+ _exptl_crystal_description rod
674
+ _exptl_crystal_colour colourless
675
+ _exptl_crystal_size_max 0.26
676
+ _exptl_crystal_size_mid 0.14
677
+ _exptl_crystal_size_min 0.10
678
+ _exptl_crystal_density_meas ?
679
+ _exptl_crystal_density_diffrn 1.342
680
+ _exptl_crystal_density_method 'not measured'
681
+ _exptl_crystal_F_000 328
682
+ _exptl_absorpt_coefficient_mu 0.091
683
+ _exptl_absorpt_correction_type multi-scan
684
+ _exptl_absorpt_process_details '(SADABS; Sheldrick, 2003)'
685
+ _exptl_absorpt_correction_T_min 0.977
686
+ _exptl_absorpt_correction_T_max 0.991
687
+
688
+ _exptl_special_details
689
+ ?
690
+
691
+ _diffrn_ambient_temperature 120(2)
692
+ _diffrn_radiation_wavelength 0.71073
693
+ _diffrn_radiation_type 'Mo K\a'
694
+ _diffrn_radiation_source 'Bruker Nonius FR591 rotating anode'
695
+ _diffrn_radiation_monochromator graphite
696
+ _diffrn_measurement_device_type 'Bruker Nonius KappaCCD area-detector'
697
+ _diffrn_measurement_method '\f and \w'
698
+ _diffrn_detector_area_resol_mean 9.091
699
+ _diffrn_standards_interval_count 0
700
+ _diffrn_standards_interval_time 0
701
+ _diffrn_standards_number 0
702
+ _diffrn_standards_decay_% 0
703
+
704
+ _diffrn_reflns_number 13276
705
+ _diffrn_reflns_av_R_equivalents 0.0486
706
+ _diffrn_reflns_av_sigmaI/netI 0.0321
707
+ _diffrn_reflns_limit_h_min -11
708
+ _diffrn_reflns_limit_h_max 11
709
+ _diffrn_reflns_limit_k_min -14
710
+ _diffrn_reflns_limit_k_max 14
711
+ _diffrn_reflns_limit_l_min -11
712
+ _diffrn_reflns_limit_l_max 11
713
+ _diffrn_reflns_theta_min 3.71
714
+ _diffrn_reflns_theta_max 27.50
715
+ _diffrn_reflns_theta_full 27.50
716
+ _diffrn_measured_fraction_theta_max 0.997
717
+ _diffrn_measured_fraction_theta_full 0.997
718
+ _reflns_number_total 1851
719
+ _reflns_number_gt 1638
720
+ _reflns_threshold_expression I>2\s(I)
721
+
722
+ _computing_data_collection 'COLLECT (Nonius, 1998)'
723
+ _computing_cell_refinement
724
+ 'DIRAX/LSQ (Duisenberg <i>et al.</i>, 2000)'
725
+ _computing_data_reduction
726
+ 'EVALCCD (Duisenberg <i>et al.</i>, 2003)'
727
+ _computing_structure_solution 'SIR2004 (Burla et al., 2005)'
728
+ _computing_structure_refinement 'SHELXL97 (Sheldrick, 2008)'
729
+ _computing_molecular_graphics 'PLATON (Spek, 2009)'
730
+ _computing_publication_material
731
+ 'SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009)'
732
+
733
+ #=========================================================================
734
+ # 8. Refinement Data
735
+
736
+ _refine_ls_structure_factor_coef Fsqd
737
+ _refine_ls_matrix_type full
738
+ _refine_ls_weighting_scheme calc
739
+ _refine_ls_weighting_details
740
+ 'w = 1/[\s^2^(Fo^2^)+(0.0351P)^2^+0.1657P] where P=(Fo^2^+2Fc^2^)/3'
741
+ _atom_sites_solution_primary direct
742
+ _atom_sites_solution_secondary difmap
743
+ _atom_sites_solution_hydrogens geom
744
+ _refine_ls_hydrogen_treatment constr
745
+ _refine_ls_extinction_method none
746
+ _refine_ls_extinction_coef ?
747
+ _chemical_absolute_configuration unk
748
+ _refine_ls_number_reflns 1851
749
+ _refine_ls_number_parameters 210
750
+ _refine_ls_number_restraints 1
751
+ _refine_ls_R_factor_all 0.0455
752
+ _refine_ls_R_factor_gt 0.0360
753
+ _refine_ls_wR_factor_ref 0.0807
754
+ _refine_ls_wR_factor_gt 0.0772
755
+ _refine_ls_goodness_of_fit_ref 1.146
756
+ _refine_ls_restrained_S_all 1.146
757
+ _refine_ls_shift/su_max 0.001
758
+ _refine_ls_shift/su_mean 0.000
759
+ _refine_diff_density_max 0.209
760
+ _refine_diff_density_min -0.240
761
+
762
+ #=========================================================================
763
+ # 9. Atomic Coordinates and Displacement Parameters
764
+
765
+ loop_
766
+ _atom_site_label
767
+ _atom_site_type_symbol
768
+ _atom_site_fract_x
769
+ _atom_site_fract_y
770
+ _atom_site_fract_z
771
+ _atom_site_U_iso_or_equiv
772
+ _atom_site_adp_type
773
+ _atom_site_occupancy
774
+ _atom_site_symmetry_multiplicity
775
+ _atom_site_calc_flag
776
+ _atom_site_refinement_flags
777
+ _atom_site_disorder_assembly
778
+ _atom_site_disorder_group
779
+ C1 C 0.6424(3) 0.5942(2) 0.7939(3) 0.0186(5) Uani 1 1 d . . .
780
+ H1 H 0.6599 0.6154 0.9031 0.022 Uiso 1 1 calc R . .
781
+ C2 C 0.7828(3) 0.5595(2) 0.7731(3) 0.0211(5) Uani 1 1 d . . .
782
+ H2 H 0.8953 0.5589 0.8678 0.025 Uiso 1 1 calc R . .
783
+ C3 C 0.7604(3) 0.5255(2) 0.6149(3) 0.0202(5) Uani 1 1 d . . .
784
+ H3 H 0.8563 0.4993 0.6019 0.024 Uiso 1 1 calc R . .
785
+ C4 C 0.5955(3) 0.5306(2) 0.4757(3) 0.0166(5) Uani 1 1 d . . .
786
+ H4 H 0.5780 0.5079 0.3669 0.020 Uiso 1 1 calc R . .
787
+ C4a C 0.4576(3) 0.5687(2) 0.4973(3) 0.0142(5) Uani 1 1 d . . .
788
+ N5 N 0.2883(2) 0.58197(17) 0.3533(2) 0.0132(4) Uani 1 1 d . . .
789
+ C6 C 0.1469(3) 0.4966(2) 0.3244(3) 0.0128(4) Uani 1 1 d . . .
790
+ H6 H 0.0389 0.5461 0.2831 0.015 Uiso 1 1 calc R . .
791
+ C6a C 0.1714(3) 0.4295(2) 0.4842(3) 0.0145(5) Uani 1 1 d . . .
792
+ C7 C 0.1243(3) 0.3077(2) 0.4737(3) 0.0174(5) Uani 1 1 d . . .
793
+ H7 H 0.0884 0.2652 0.3704 0.021 Uiso 1 1 calc R . .
794
+ C8 C 0.1286(3) 0.2465(2) 0.6107(3) 0.0189(5) Uani 1 1 d . . .
795
+ H8 H 0.0977 0.1628 0.6008 0.023 Uiso 1 1 calc R . .
796
+ C9 C 0.1780(3) 0.3073(2) 0.7616(3) 0.0188(5) Uani 1 1 d . . .
797
+ H9 H 0.1759 0.2670 0.8540 0.023 Uiso 1 1 calc R . .
798
+ C10 C 0.2305(3) 0.4277(2) 0.7762(3) 0.0185(5) Uani 1 1 d . . .
799
+ H10 H 0.2674 0.4685 0.8808 0.022 Uiso 1 1 calc R . .
800
+ C10a C 0.2307(3) 0.4909(2) 0.6412(3) 0.0151(5) Uani 1 1 d . . .
801
+ C11 C 0.3097(3) 0.6185(2) 0.6677(3) 0.0150(5) Uani 1 1 d . . .
802
+ H11 H 0.2307 0.6694 0.5686 0.018 Uiso 1 1 calc R . .
803
+ C11a C 0.4763(3) 0.5982(2) 0.6566(3) 0.0145(5) Uani 1 1 d . . .
804
+ C51 C 0.2534(3) 0.6720(2) 0.2388(3) 0.0142(5) Uani 1 1 d . . .
805
+ O51 O 0.10670(19) 0.68043(16) 0.11339(19) 0.0180(4) Uani 1 1 d . . .
806
+ C52 C 0.3950(3) 0.7609(2) 0.2675(3) 0.0189(5) Uani 1 1 d . . .
807
+ H52A H 0.4784 0.7219 0.2397 0.028 Uiso 1 1 calc R . .
808
+ H52B H 0.4537 0.7862 0.3862 0.028 Uiso 1 1 calc R . .
809
+ H52C H 0.3452 0.8324 0.1952 0.028 Uiso 1 1 calc R . .
810
+ C61 C 0.1208(3) 0.4093(2) 0.1806(3) 0.0145(5) Uani 1 1 d . . .
811
+ O61 O -0.0387(2) 0.36474(17) 0.10291(19) 0.0186(4) Uani 1 1 d . . .
812
+ H61 H -0.0487 0.3107 0.0297 0.028 Uiso 1 1 d R . .
813
+ O62 O 0.2327(2) 0.38608(17) 0.1438(2) 0.0224(4) Uani 1 1 d . . .
814
+ C111 C 0.3325(3) 0.6837(2) 0.8280(3) 0.0202(5) Uani 1 1 d . . .
815
+ H11A H 0.2247 0.6761 0.8362 0.024 Uiso 1 1 calc R . .
816
+ H11B H 0.4266 0.6440 0.9284 0.024 Uiso 1 1 calc R . .
817
+ C112 C 0.3752(3) 0.8181(2) 0.8272(3) 0.0229(5) Uani 1 1 d . . .
818
+ H12A H 0.4821 0.8260 0.8195 0.034 Uiso 1 1 calc R . .
819
+ H12B H 0.3905 0.8565 0.9317 0.034 Uiso 1 1 calc R . .
820
+ H12C H 0.2804 0.8583 0.7300 0.034 Uiso 1 1 calc R . .
821
+
822
+ loop_
823
+ _atom_site_aniso_label
824
+ _atom_site_aniso_U_11
825
+ _atom_site_aniso_U_22
826
+ _atom_site_aniso_U_33
827
+ _atom_site_aniso_U_23
828
+ _atom_site_aniso_U_13
829
+ _atom_site_aniso_U_12
830
+ C1 0.0214(12) 0.0168(12) 0.0133(11) -0.0003(10) 0.0048(10) -0.0021(10)
831
+ C2 0.0163(12) 0.0170(13) 0.0222(13) 0.0035(10) 0.0027(10) -0.0025(9)
832
+ C3 0.0158(11) 0.0198(13) 0.0252(13) 0.0052(10) 0.0101(11) 0.0018(10)
833
+ C4 0.0191(11) 0.0145(12) 0.0168(11) 0.0012(9) 0.0091(10) -0.0002(9)
834
+ C4a 0.0138(11) 0.0128(12) 0.0136(11) 0.0021(9) 0.0045(10) -0.0010(8)
835
+ N5 0.0120(9) 0.0137(10) 0.0117(9) 0.0010(8) 0.0038(8) -0.0010(7)
836
+ C6 0.0117(10) 0.0148(11) 0.0113(10) -0.0002(9) 0.0049(9) -0.0006(8)
837
+ C6a 0.0133(11) 0.0176(12) 0.0136(11) 0.0004(9) 0.0071(9) 0.0010(9)
838
+ C7 0.0156(11) 0.0201(12) 0.0151(11) -0.0019(9) 0.0061(9) -0.0004(9)
839
+ C8 0.0177(12) 0.0162(12) 0.0217(12) 0.0009(10) 0.0085(10) -0.0028(10)
840
+ C9 0.0173(12) 0.0222(13) 0.0183(12) 0.0054(10) 0.0097(10) 0.0008(10)
841
+ C10 0.0172(12) 0.0242(13) 0.0135(11) -0.0006(10) 0.0069(10) 0.0020(10)
842
+ C10a 0.0125(10) 0.0167(11) 0.0162(11) 0.0002(9) 0.0068(9) 0.0006(9)
843
+ C11 0.0152(11) 0.0167(12) 0.0135(11) -0.0015(9) 0.0073(9) -0.0009(9)
844
+ C11a 0.0184(12) 0.0098(10) 0.0156(11) 0.0006(9) 0.0083(10) -0.0010(9)
845
+ C51 0.0168(11) 0.0142(11) 0.0121(11) -0.0020(9) 0.0074(9) 0.0004(9)
846
+ O51 0.0161(8) 0.0186(9) 0.0150(8) 0.0025(7) 0.0040(7) 0.0005(7)
847
+ C52 0.0207(12) 0.0162(12) 0.0194(12) 0.0029(10) 0.0092(10) -0.0010(10)
848
+ C61 0.0176(11) 0.0127(11) 0.0117(10) 0.0022(9) 0.0058(9) 0.0001(9)
849
+ O61 0.0176(8) 0.0213(9) 0.0150(8) -0.0065(7) 0.0062(7) -0.0045(7)
850
+ O62 0.0221(9) 0.0252(10) 0.0241(9) -0.0062(8) 0.0144(8) -0.0024(7)
851
+ C111 0.0243(12) 0.0195(13) 0.0176(12) -0.0036(11) 0.0106(10) -0.0018(11)
852
+ C112 0.0265(13) 0.0208(13) 0.0248(13) -0.0065(10) 0.0151(11) -0.0031(10)
853
+
854
+ #=========================================================================
855
+ # 10. Molecular Geometry
856
+
857
+ loop_
858
+ _geom_bond_atom_site_label_1
859
+ _geom_bond_atom_site_label_2
860
+ _geom_bond_distance
861
+ _geom_bond_site_symmetry_2
862
+ _geom_bond_publ_flag
863
+ C1 C2 1.388(4) . ?
864
+ C1 C11a 1.395(3) . ?
865
+ C1 H1 0.9500 . ?
866
+ C2 C3 1.393(4) . ?
867
+ C2 H2 0.9500 . ?
868
+ C3 C4 1.395(3) . ?
869
+ C3 H3 0.9500 . ?
870
+ C4 C4a 1.383(3) . ?
871
+ C4 H4 0.9500 . ?
872
+ C4a C11a 1.402(3) . ?
873
+ C4a N5 1.442(3) . ?
874
+ N5 C51 1.354(3) . ?
875
+ N5 C6 1.479(3) . ?
876
+ C6 C6a 1.538(3) . ?
877
+ C6 C61 1.538(3) . ?
878
+ C6 H6 1.0000 . ?
879
+ C6a C7 1.390(3) . ?
880
+ C6a C10a 1.423(3) . ?
881
+ C7 C8 1.390(3) . ?
882
+ C7 H7 0.9500 . ?
883
+ C8 C9 1.386(3) . ?
884
+ C8 H8 0.9500 . ?
885
+ C9 C10 1.386(3) . ?
886
+ C9 H9 0.9500 . ?
887
+ C10 C10a 1.401(3) . ?
888
+ C10 H10 0.9500 . ?
889
+ C10a C11 1.532(3) . ?
890
+ C11 C11a 1.533(3) . ?
891
+ C11 C111 1.536(3) . ?
892
+ C11 H11 1.0000 . ?
893
+ C51 O51 1.249(3) . ?
894
+ C51 C52 1.506(3) . ?
895
+ C52 H52A 0.9800 . ?
896
+ C52 H52B 0.9800 . ?
897
+ C52 H52C 0.9800 . ?
898
+ C61 O62 1.207(3) . ?
899
+ C61 O61 1.328(3) . ?
900
+ O61 H61 0.8602 . ?
901
+ C111 C112 1.523(4) . ?
902
+ C111 H11A 0.9900 . ?
903
+ C111 H11B 0.9900 . ?
904
+ C112 H12A 0.9800 . ?
905
+ C112 H12B 0.9800 . ?
906
+ C112 H12C 0.9800 . ?
907
+
908
+ loop_
909
+ _geom_angle_atom_site_label_1
910
+ _geom_angle_atom_site_label_2
911
+ _geom_angle_atom_site_label_3
912
+ _geom_angle
913
+ _geom_angle_site_symmetry_1
914
+ _geom_angle_site_symmetry_3
915
+ _geom_angle_publ_flag
916
+ C2 C1 C11a 120.9(2) . . ?
917
+ C2 C1 H1 119.5 . . ?
918
+ C11a C1 H1 119.5 . . ?
919
+ C1 C2 C3 120.7(2) . . ?
920
+ C1 C2 H2 119.6 . . ?
921
+ C3 C2 H2 119.6 . . ?
922
+ C2 C3 C4 119.1(2) . . ?
923
+ C2 C3 H3 120.4 . . ?
924
+ C4 C3 H3 120.4 . . ?
925
+ C4a C4 C3 119.6(2) . . ?
926
+ C4a C4 H4 120.2 . . ?
927
+ C3 C4 H4 120.2 . . ?
928
+ C4 C4a C11a 122.1(2) . . ?
929
+ C4 C4a N5 120.27(19) . . ?
930
+ C11a C4a N5 117.61(19) . . ?
931
+ C51 N5 C4a 121.36(18) . . ?
932
+ C51 N5 C6 117.57(18) . . ?
933
+ C4a N5 C6 121.06(17) . . ?
934
+ N5 C6 C6a 114.16(18) . . ?
935
+ N5 C6 C61 108.54(17) . . ?
936
+ C6a C6 C61 112.80(19) . . ?
937
+ N5 C6 H6 107.0 . . ?
938
+ C6a C6 H6 107.0 . . ?
939
+ C61 C6 H6 107.0 . . ?
940
+ C7 C6a C10a 118.7(2) . . ?
941
+ C7 C6a C6 119.6(2) . . ?
942
+ C10a C6a C6 121.6(2) . . ?
943
+ C8 C7 C6a 121.6(2) . . ?
944
+ C8 C7 H7 119.2 . . ?
945
+ C6a C7 H7 119.2 . . ?
946
+ C9 C8 C7 120.0(2) . . ?
947
+ C9 C8 H8 120.0 . . ?
948
+ C7 C8 H8 120.0 . . ?
949
+ C8 C9 C10 119.2(2) . . ?
950
+ C8 C9 H9 120.4 . . ?
951
+ C10 C9 H9 120.4 . . ?
952
+ C9 C10 C10a 122.0(2) . . ?
953
+ C9 C10 H10 119.0 . . ?
954
+ C10a C10 H10 119.0 . . ?
955
+ C10 C10a C6a 118.4(2) . . ?
956
+ C10 C10a C11 120.5(2) . . ?
957
+ C6a C10a C11 120.8(2) . . ?
958
+ C10a C11 C11a 103.51(18) . . ?
959
+ C10a C11 C111 114.78(19) . . ?
960
+ C11a C11 C111 115.41(19) . . ?
961
+ C10a C11 H11 107.6 . . ?
962
+ C11a C11 H11 107.6 . . ?
963
+ C111 C11 H11 107.6 . . ?
964
+ C1 C11a C4a 117.4(2) . . ?
965
+ C1 C11a C11 125.3(2) . . ?
966
+ C4a C11a C11 116.87(19) . . ?
967
+ O51 C51 N5 120.3(2) . . ?
968
+ O51 C51 C52 121.4(2) . . ?
969
+ N5 C51 C52 118.30(19) . . ?
970
+ C51 C52 H52A 109.5 . . ?
971
+ C51 C52 H52B 109.5 . . ?
972
+ H52A C52 H52B 109.5 . . ?
973
+ C51 C52 H52C 109.5 . . ?
974
+ H52A C52 H52C 109.5 . . ?
975
+ H52B C52 H52C 109.5 . . ?
976
+ O62 C61 O61 125.0(2) . . ?
977
+ O62 C61 C6 123.3(2) . . ?
978
+ O61 C61 C6 111.64(18) . . ?
979
+ C61 O61 H61 110.7 . . ?
980
+ C112 C111 C11 111.7(2) . . ?
981
+ C112 C111 H11A 109.3 . . ?
982
+ C11 C111 H11A 109.3 . . ?
983
+ C112 C111 H11B 109.3 . . ?
984
+ C11 C111 H11B 109.3 . . ?
985
+ H11A C111 H11B 108.0 . . ?
986
+ C111 C112 H12A 109.5 . . ?
987
+ C111 C112 H12B 109.5 . . ?
988
+ H12A C112 H12B 109.5 . . ?
989
+ C111 C112 H12C 109.5 . . ?
990
+ H12A C112 H12C 109.5 . . ?
991
+ H12B C112 H12C 109.5 . . ?
992
+
993
+ loop_
994
+ _geom_torsion_atom_site_label_1
995
+ _geom_torsion_atom_site_label_2
996
+ _geom_torsion_atom_site_label_3
997
+ _geom_torsion_atom_site_label_4
998
+ _geom_torsion
999
+ _geom_torsion_site_symmetry_1
1000
+ _geom_torsion_site_symmetry_2
1001
+ _geom_torsion_site_symmetry_3
1002
+ _geom_torsion_site_symmetry_4
1003
+ _geom_torsion_publ_flag
1004
+ C11a C1 C2 C3 -1.3(4) . . . . ?
1005
+ C1 C2 C3 C4 2.1(4) . . . . ?
1006
+ C2 C3 C4 C4a -0.1(4) . . . . ?
1007
+ C3 C4 C4a C11a -2.7(4) . . . . ?
1008
+ C3 C4 C4a N5 176.0(2) . . . . ?
1009
+ C4 C4a N5 C51 -70.0(3) . . . . ?
1010
+ C11a C4a N5 C51 108.7(2) . . . . ?
1011
+ C4 C4a N5 C6 109.3(2) . . . . ?
1012
+ C11a C4a N5 C6 -72.0(3) . . . . ?
1013
+ C51 N5 C6 C6a -158.55(19) . . . . ?
1014
+ C4a N5 C6 C6a 22.1(3) . . . . ?
1015
+ C51 N5 C6 C61 74.7(2) . . . . ?
1016
+ C4a N5 C6 C61 -104.7(2) . . . . ?
1017
+ N5 C6 C6a C7 -141.2(2) . . . . ?
1018
+ C61 C6 C6a C7 -16.7(3) . . . . ?
1019
+ N5 C6 C6a C10a 42.9(3) . . . . ?
1020
+ C61 C6 C6a C10a 167.43(19) . . . . ?
1021
+ C10a C6a C7 C8 2.2(3) . . . . ?
1022
+ C6 C6a C7 C8 -173.8(2) . . . . ?
1023
+ C6a C7 C8 C9 1.0(4) . . . . ?
1024
+ C7 C8 C9 C10 -3.0(3) . . . . ?
1025
+ C8 C9 C10 C10a 1.8(3) . . . . ?
1026
+ C9 C10 C10a C6a 1.4(3) . . . . ?
1027
+ C9 C10 C10a C11 -172.7(2) . . . . ?
1028
+ C7 C6a C10a C10 -3.4(3) . . . . ?
1029
+ C6 C6a C10a C10 172.6(2) . . . . ?
1030
+ C7 C6a C10a C11 170.7(2) . . . . ?
1031
+ C6 C6a C10a C11 -13.4(3) . . . . ?
1032
+ C10 C10a C11 C11a 108.4(2) . . . . ?
1033
+ C6a C10a C11 C11a -65.6(3) . . . . ?
1034
+ C10 C10a C11 C111 -18.3(3) . . . . ?
1035
+ C6a C10a C11 C111 167.7(2) . . . . ?
1036
+ C2 C1 C11a C4a -1.4(3) . . . . ?
1037
+ C2 C1 C11a C11 171.5(2) . . . . ?
1038
+ C4 C4a C11a C1 3.4(3) . . . . ?
1039
+ N5 C4a C11a C1 -175.3(2) . . . . ?
1040
+ C4 C4a C11a C11 -170.1(2) . . . . ?
1041
+ N5 C4a C11a C11 11.2(3) . . . . ?
1042
+ C10a C11 C11a C1 -103.1(3) . . . . ?
1043
+ C111 C11 C11a C1 23.1(4) . . . . ?
1044
+ C10a C11 C11a C4a 69.8(2) . . . . ?
1045
+ C111 C11 C11a C4a -163.9(2) . . . . ?
1046
+ C4a N5 C51 O51 178.7(2) . . . . ?
1047
+ C6 N5 C51 O51 -0.7(3) . . . . ?
1048
+ C4a N5 C51 C52 -1.5(3) . . . . ?
1049
+ C6 N5 C51 C52 179.1(2) . . . . ?
1050
+ N5 C6 C61 O62 24.4(3) . . . . ?
1051
+ C6a C6 C61 O62 -103.1(3) . . . . ?
1052
+ N5 C6 C61 O61 -155.01(18) . . . . ?
1053
+ C6a C6 C61 O61 77.5(2) . . . . ?
1054
+ C10a C11 C111 C112 -168.0(2) . . . . ?
1055
+ C11a C11 C111 C112 71.7(3) . . . . ?
1056
+
1057
+ loop_
1058
+ _geom_hbond_atom_site_label_D
1059
+ _geom_hbond_atom_site_label_H
1060
+ _geom_hbond_atom_site_label_A
1061
+ _geom_hbond_distance_DH
1062
+ _geom_hbond_distance_HA
1063
+ _geom_hbond_distance_DA
1064
+ _geom_hbond_angle_DHA
1065
+ _geom_hbond_site_symmetry_A
1066
+ _geom_hbond_publ_flag
1067
+ #
1068
+ # Hydrogen bonding scheme
1069
+ # ======== ======= ======
1070
+ #
1071
+ # D H A D-H H...A D...A D-H...A symm publ
1072
+ # - - - --- ----- ----- ------- ---- ----
1073
+ O61 H61 O51 0.86 1.83 2.672(2) 167 2_545 no
1074
+ C2 H2 O51 0.95 2.49 3.309(3) 144 1_656 no
1075
+ C112 H12A O62 0.98 2.46 3.418(4) 165 2_656 no
1076
+
1077
+ #======================================================================
1078
+
1079
+
1080
+ _iucr_refine_instructions_details
1081
+ ;
1082
+ TITL CM45F8
1083
+ CELL 0.71073 8.8053 10.9821 9.0080 90.000 118.510 90.000
1084
+ ZERR 2.00 0.0003 0.0004 0.0006 0.000 0.003 0.000
1085
+ LATT -1
1086
+ SYMM - X, 1/2 + Y, - Z
1087
+ SFAC C H N O
1088
+ UNIT 38 38 2 6
1089
+ MERG 4
1090
+ OMIT -2.00 55.00
1091
+ FMAP 2
1092
+ PLAN 20
1093
+ SIZE 0.10 0.14 0.26
1094
+ ACTA
1095
+ BOND $H
1096
+ CONF
1097
+ HTAB
1098
+ OMIT 1 1 0
1099
+ OMIT -1 1 1
1100
+ LIST 4
1101
+ L.S. 8
1102
+ TEMP -153.00
1103
+ WGHT 0.035100 0.165700
1104
+ FVAR 1.39751
1105
+ C1 1 0.642443 0.594154 0.793875 11.00000 0.02140 0.01683 =
1106
+ 0.01327 -0.00034 0.00478 -0.00213
1107
+ AFIX 43
1108
+ H1 2 0.659873 0.615425 0.903129 11.00000 -1.20000
1109
+ AFIX 0
1110
+ C2 1 0.782781 0.559463 0.773119 11.00000 0.01629 0.01699 =
1111
+ 0.02217 0.00353 0.00273 -0.00253
1112
+ AFIX 43
1113
+ H2 2 0.895282 0.558863 0.867841 11.00000 -1.20000
1114
+ AFIX 0
1115
+ C3 1 0.760432 0.525515 0.614880 11.00000 0.01584 0.01980 =
1116
+ 0.02524 0.00519 0.01015 0.00176
1117
+ AFIX 43
1118
+ H3 2 0.856262 0.499287 0.601936 11.00000 -1.20000
1119
+ AFIX 0
1120
+ C4 1 0.595473 0.530554 0.475729 11.00000 0.01912 0.01446 =
1121
+ 0.01678 0.00125 0.00906 -0.00022
1122
+ AFIX 43
1123
+ H4 2 0.577979 0.507917 0.366895 11.00000 -1.20000
1124
+ AFIX 0
1125
+ C4a 1 0.457563 0.568724 0.497261 11.00000 0.01382 0.01282 =
1126
+ 0.01356 0.00214 0.00450 -0.00103
1127
+ N5 3 0.288314 0.581975 0.353266 11.00000 0.01198 0.01373 =
1128
+ 0.01166 0.00100 0.00383 -0.00105
1129
+ C6 1 0.146917 0.496600 0.324411 11.00000 0.01169 0.01480 =
1130
+ 0.01126 -0.00015 0.00490 -0.00064
1131
+ AFIX 13
1132
+ H6 2 0.038938 0.546079 0.283111 11.00000 -1.20000
1133
+ AFIX 0
1134
+ C6a 1 0.171355 0.429513 0.484153 11.00000 0.01329 0.01757 =
1135
+ 0.01355 0.00044 0.00709 0.00104
1136
+ C7 1 0.124326 0.307677 0.473724 11.00000 0.01560 0.02008 =
1137
+ 0.01506 -0.00192 0.00609 -0.00038
1138
+ AFIX 43
1139
+ H7 2 0.088369 0.265234 0.370398 11.00000 -1.20000
1140
+ AFIX 0
1141
+ C8 1 0.128614 0.246451 0.610695 11.00000 0.01770 0.01619 =
1142
+ 0.02174 0.00087 0.00851 -0.00276
1143
+ AFIX 43
1144
+ H8 2 0.097654 0.162826 0.600826 11.00000 -1.20000
1145
+ AFIX 0
1146
+ C9 1 0.178015 0.307296 0.761647 11.00000 0.01733 0.02220 =
1147
+ 0.01834 0.00538 0.00971 0.00082
1148
+ AFIX 43
1149
+ H9 2 0.175933 0.267006 0.853983 11.00000 -1.20000
1150
+ AFIX 0
1151
+ C10 1 0.230502 0.427676 0.776204 11.00000 0.01718 0.02418 =
1152
+ 0.01352 -0.00059 0.00685 0.00203
1153
+ AFIX 43
1154
+ H10 2 0.267411 0.468531 0.880811 11.00000 -1.20000
1155
+ AFIX 0
1156
+ C10a 1 0.230749 0.490913 0.641243 11.00000 0.01246 0.01667 =
1157
+ 0.01623 0.00016 0.00684 0.00056
1158
+ C11 1 0.309683 0.618540 0.667747 11.00000 0.01523 0.01672 =
1159
+ 0.01353 -0.00154 0.00732 -0.00093
1160
+ AFIX 13
1161
+ H11 2 0.230748 0.669420 0.568637 11.00000 -1.20000
1162
+ AFIX 0
1163
+ C11a 1 0.476255 0.598216 0.656614 11.00000 0.01843 0.00976 =
1164
+ 0.01565 0.00055 0.00829 -0.00105
1165
+
1166
+ C51 1 0.253368 0.672019 0.238787 11.00000 0.01680 0.01421 =
1167
+ 0.01210 -0.00198 0.00743 0.00042
1168
+ O51 4 0.106700 0.680430 0.113386 11.00000 0.01608 0.01859 =
1169
+ 0.01499 0.00249 0.00402 0.00048
1170
+ C52 1 0.395047 0.760869 0.267480 11.00000 0.02070 0.01620 =
1171
+ 0.01940 0.00286 0.00916 -0.00096
1172
+ AFIX 137
1173
+ H52A 2 0.478434 0.721879 0.239710 11.00000 -1.50000
1174
+ H52B 2 0.453745 0.786182 0.386198 11.00000 -1.50000
1175
+ H52C 2 0.345169 0.832372 0.195207 11.00000 -1.50000
1176
+ AFIX 0
1177
+
1178
+ C61 1 0.120819 0.409307 0.180594 11.00000 0.01761 0.01275 =
1179
+ 0.01168 0.00224 0.00579 0.00012
1180
+ O61 4 -0.038667 0.364738 0.102914 11.00000 0.01765 0.02128 =
1181
+ 0.01495 -0.00650 0.00617 -0.00452
1182
+ AFIX 3
1183
+ H61 2 -0.048669 0.310674 0.029683 11.00000 -1.50000
1184
+ AFIX 0
1185
+ O62 4 0.232707 0.386081 0.143759 11.00000 0.02212 0.02519 =
1186
+ 0.02409 -0.00624 0.01436 -0.00241
1187
+
1188
+ C111 1 0.332488 0.683745 0.827992 11.00000 0.02428 0.01948 =
1189
+ 0.01756 -0.00357 0.01064 -0.00184
1190
+ AFIX 23
1191
+ H11A 2 0.224713 0.676059 0.836195 11.00000 -1.20000
1192
+ H11B 2 0.426599 0.644010 0.928445 11.00000 -1.20000
1193
+ AFIX 0
1194
+ C112 1 0.375182 0.818096 0.827218 11.00000 0.02653 0.02084 =
1195
+ 0.02483 -0.00653 0.01506 -0.00313
1196
+ AFIX 137
1197
+ H12A 2 0.482058 0.825982 0.819501 11.00000 -1.50000
1198
+ H12B 2 0.390518 0.856476 0.931702 11.00000 -1.50000
1199
+ H12C 2 0.280435 0.858256 0.729953 11.00000 -1.50000
1200
+ HKLF 4
1201
+
1202
+ REM CM45F8
1203
+ REM R1 = 0.0360 for 1638 Fo > 4sig(Fo) and 0.0455 for all 1851 data
1204
+ REM 210 parameters refined using 1 restraints
1205
+
1206
+ END
1207
+
1208
+ WGHT 0.0351 0.1657
1209
+ REM Highest difference peak 0.209, deepest hole -0.240, 1-sigma level 0.047
1210
+ Q1 1 0.1374 0.4513 0.2451 11.00000 0.05 0.21
1211
+ Q2 1 0.5006 0.7306 0.7023 11.00000 0.05 0.18
1212
+ Q3 1 0.2063 0.4551 0.5588 11.00000 0.05 0.18
1213
+ Q4 1 0.2180 0.5354 0.3391 11.00000 0.05 0.17
1214
+ Q5 1 0.6831 0.6851 0.9667 11.00000 0.05 0.17
1215
+ Q6 1 0.0732 0.0693 0.6018 11.00000 0.05 0.17
1216
+ Q7 1 0.6020 0.8659 0.3678 11.00000 0.05 0.17
1217
+ Q8 1 0.5105 0.9084 0.2589 11.00000 0.05 0.16
1218
+ Q9 1 0.5204 0.7451 0.5750 11.00000 0.05 0.16
1219
+ Q10 1 0.4683 0.5985 0.5722 11.00000 0.05 0.16
1220
+ Q11 1 0.6412 0.7835 0.4017 11.00000 0.05 0.15
1221
+ Q12 1 0.1569 0.5382 0.0448 11.00000 0.05 0.15
1222
+ Q13 1 0.4688 0.7959 0.5012 11.00000 0.05 0.15
1223
+ Q14 1 0.7544 0.4002 0.4802 11.00000 0.05 0.15
1224
+ Q15 1 0.5796 0.8187 0.5697 11.00000 0.05 0.15
1225
+ Q16 1 0.3044 0.2205 0.6197 11.00000 0.05 0.15
1226
+ Q17 1 0.1886 0.2243 1.0318 11.00000 0.05 0.15
1227
+ Q18 1 0.2287 0.7530 0.4991 11.00000 0.05 0.14
1228
+ Q19 1 0.8512 0.4325 0.9053 11.00000 0.05 0.14
1229
+ Q20 1 0.5138 0.7749 0.3766 11.00000 0.05 0.14
1230
+ ;
1231
+
1232
+ # start Validation Reply Form
1233
+ _vrf_PUBL005_GLOBAL
1234
+ ;
1235
+ PROBLEM: _publ_contact_author_email, _publ_contact_author_fax and
1236
+ RESPONSE: Example CIF
1237
+ ;
1238
+ # end Validation Reply Form
1239
+
1240
+ #======================================================================
1241
+ # END of CIF
1242
+ #======================================================================
1243
+
1244
+ `
1245
+
1246
+ exampleFiles['ethanol.magres'] = `#$magres-abinitio-v1.0
1247
+ # Generated by format.py. For format definition and code samples see http://www.ccpnc.ac.uk/pmwiki.php/CCPNC/Fileformat
1248
+ [calculation]
1249
+ calc_code CASTEP
1250
+ calc_code_version 7.0
1251
+ calc_comment
1252
+ calc_kpoint_mp_grid 1 1 1
1253
+ calc_code_hgversion 0d37235409d7+ magres-efg 2013-02-07
1254
+ calc_cutoffenergy 4.0000000000000000E+01
1255
+ calc_xcfunctional PBE
1256
+ calc_kpoint_mp_offset 0.25000000 0.25000000 0.25000000
1257
+ calc_code_platform linux_x86_64_ifort12
1258
+ units calc_cutoffenergy Hartree
1259
+ calc_name ethanol
1260
+ [/calculation]
1261
+ [atoms]
1262
+ units lattice Angstrom
1263
+ units atom Angstrom
1264
+ lattice 6.0 0.0 0.0 0.0 6.0 0.0 0.0 0.0 6.0
1265
+ symmetry P1
1266
+ atom H H 1 2.129659 2.823711 2.349943
1267
+ atom H H 2 3.182454 2.075799 3.559623
1268
+ atom H H 3 3.86813 3.197626 2.370217
1269
+ atom H H 4 1.869295 3.974874 4.564773
1270
+ atom H H 5 2.561231 5.078941 3.371865
1271
+ atom H H 6 4.060671 3.677653 5.297066
1272
+ atom C C 1 2.996 2.996 2.996
1273
+ atom C C 2 2.752085 4.164107 3.937396
1274
+ atom O O 1 3.895314 4.458074 4.741964
1275
+ [/atoms]
1276
+ [magres]
1277
+ units sus 10^-6.cm^3.mol^-1
1278
+ units ms ppm
1279
+ units efg au
1280
+ units isc_fc 10^19.T^2.J^-1
1281
+ units isc 10^19.T^2.J^-1
1282
+ sus 1 0 0 0 1 0 0 0 1
1283
+ ms H 1 30.2981796159 1.2051069281 3.67274492938 1.96313294552 27.5765250451 2.57545224195 4.21834131673 2.16271307552 30.9031525163
1284
+ ms H 2 26.9742092612 -0.420221330647 0.603628166501 -0.387611330052 35.3313827464 -1.80447967738 -0.578564493964 -1.44841641969 28.4625610177
1285
+ ms H 3 29.9943370458 0.804017870839 -3.41596793698 -0.538358436872 27.8109854077 -0.130246475692 -3.56604211569 -0.0418632950686 32.5029379989
1286
+ ms H 4 32.2898154856 0.584330480731 -1.63639006642 0.778952021344 22.6711049351 1.80797334282 -0.0810936558433 2.01393309009 25.9791612443
1287
+ ms H 5 25.946849893 -2.77588906551 3.75442739434 -1.77463107727 29.7225814726 -0.398037457666 3.04599241075 -1.46601607492 26.5018075671
1288
+ ms H 6 28.6085193533 -2.06023026024 4.73450589133 -0.308253194156 32.9520121318 -6.48661920164 4.68678352951 -5.89383717672 34.3943957639
1289
+ ms C 1 150.363398078 -10.1551572591 -0.228392095331 0.262621541636 160.896219614 23.0932964082 7.6058979745 15.6796898709 158.142036855
1290
+ ms C 2 133.676840084 0.262423773157 30.3803502689 3.67357096609 87.087341646 13.766471363 33.4352726046 12.5980254544 108.80723859
1291
+ ms O 1 246.617726076 4.67835886314 23.439961146 -25.5598430959 289.39716395 -21.152670085 18.297484257 -4.25541343242 268.070670505
1292
+ efg_local H 1 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
1293
+ efg_local H 2 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
1294
+ efg_local H 3 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
1295
+ efg_local H 4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
1296
+ efg_local H 5 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
1297
+ efg_local H 6 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
1298
+ efg_local C 1 -0.0250863245422 -0.0201770085446 -0.00412773044863 -0.0201770085446 0.019590013125 0.034603122236 -0.00412773044863 0.034603122236 0.00549631141718
1299
+ efg_local C 2 0.18069118986 0.0616787382743 0.26613664065 0.0616787382743 -0.179575675203 0.11466220516 0.26613664065 0.11466220516 -0.00111551465673
1300
+ efg_local O 1 0.118861288007 0.135560088603 1.49199510969 0.135560088603 0.0010287580134 -0.861525967236 1.49199510969 -0.861525967236 -0.11989004602
1301
+ efg_nonlocal H 1 -0.248884029127 -0.15886792949 -0.510061683836 -0.15886792949 0.31790645627 -0.164617997629 -0.510061683836 -0.164617997629 -0.0690224271437
1302
+ efg_nonlocal H 2 0.413666682454 0.14659469133 -0.101224264464 0.14659469133 -0.557394043688 0.377626548075 -0.101224264464 0.377626548075 0.143727361235
1303
+ efg_nonlocal H 3 -0.240472505532 -0.1201678195 0.512637552144 -0.1201678195 0.352737517928 0.0258286832003 0.512637552144 0.0258286832003 -0.112265012396
1304
+ efg_nonlocal H 4 -0.47263265592 -0.148232439756 0.491190116538 -0.148232439756 0.40383299567 0.0474885223735 0.491190116538 0.0474885223735 0.06879966025
1305
+ efg_nonlocal H 5 0.345536759085 0.227490107486 -0.192663085782 0.227490107486 -0.428940178047 0.468128657615 -0.192663085782 0.468128657615 0.083403418962
1306
+ efg_nonlocal H 6 0.682455309103 0.347422629338 -0.345110329811 0.347422629338 -0.57839260253 1.04274527009 -0.345110329811 1.04274527009 -0.104062706573
1307
+ efg_nonlocal C 1 0.130515539747 -0.00113106162527 -0.0103315568603 -0.00113106162527 -0.0778325541782 -0.186058494954 -0.0103315568603 -0.186058494954 -0.0526829855687
1308
+ efg_nonlocal C 2 -0.10120809182 -0.0606319177341 -0.25184927724 -0.0606319177341 0.10366108656 -0.201110715697 -0.25184927724 -0.201110715697 -0.00245299473989
1309
+ efg_nonlocal O 1 -0.0499340762424 -0.0597999337628 -0.341995493801 -0.0597999337628 0.070460923598 0.0611629807928 -0.341995493801 0.0611629807928 -0.0205268473556
1310
+ efg H 1 0.12793404309 0.0514298737569 0.20226839328 0.0514298737569 -0.133531745662 0.0414560149276 0.20226839328 0.0414560149276 0.00559770257191
1311
+ efg H 2 -0.133979130361 -0.0609040781878 0.0374120243967 -0.0609040781878 0.157638296763 -0.184442244602 0.0374120243967 -0.184442244602 -0.0236591664019
1312
+ efg H 3 0.12986839977 0.0652645621537 -0.201061065166 0.0652645621537 -0.128376570683 -0.0454082281587 -0.201061065166 -0.0454082281587 -0.00149182908676
1313
+ efg H 4 0.125522205339 0.060319384091 -0.183473060621 0.060319384091 -0.129847323513 -0.040585650492 -0.183473060621 -0.040585650492 0.00432511817317
1314
+ efg H 5 -0.126596501712 -0.0582754965986 0.0467662219879 -0.0582754965986 0.15405837804 -0.184288654121 0.0467662219879 -0.184288654121 -0.0274618763279
1315
+ efg H 6 -0.190199778929 -0.0789692888392 0.0920151083512 -0.0789692888392 0.199082123801 -0.306948344129 0.0920151083512 -0.306948344129 -0.00888234487242
1316
+ efg C 1 -0.0173552373 -0.0176045247437 -0.000136955319678 -0.0176045247437 0.0135099098682 0.0274798976768 -0.000136955319678 0.0274798976768 0.00384532743183
1317
+ efg C 2 0.184546017444 0.0651728710368 0.269047132476 0.0651728710368 -0.18101177765 0.104663940666 0.269047132476 0.104663940666 -0.0035342397939
1318
+ efg O 1 0.103201288239 0.138401445413 1.52917490275 0.138401445413 0.023733007643 -0.902715992177 1.52917490275 -0.902715992177 -0.126934295882
1319
+ isc_fc C 1 H 1 35.9946358421 1.08660078313 4.35110864214 1.08660078175 30.2365892665 0.812257453852 4.35110864168 0.812257453841 33.2357617836
1320
+ isc_fc C 1 H 2 31.1380312992 -1.21890555465 0.824294625004 -1.21890555432 37.2471446158 -4.19417641023 0.82429462563 -4.19417640926 33.6716733223
1321
+ isc_fc C 1 H 3 37.3134614796 1.5695753567 -4.23203198436 1.56957535695 31.7651945551 -1.13050653797 -4.23203198415 -1.13050653608 34.3953843096
1322
+ isc_fc C 1 H 4 1.171394881 -0.00245959281176 0.0888907042389 -0.00245959297273 1.4655854168 0.1064401538 0.0888907048839 0.106440153617 1.2444823826
1323
+ isc_fc C 1 H 5 0.480278947603 0.00779303492979 -0.0370551454302 0.00779303431011 0.372884818496 0.142437254584 -0.0370551459683 0.142437254725 0.589135204716
1324
+ isc_fc C 1 H 6 0.263119906174 0.00342470624062 -0.0207661093985 0.00342470637378 0.33742556529 0.0544173442504 -0.0207661083489 0.0544173453321 0.256170911424
1325
+ isc_fc C 1 C 1 -2802.07279605 -0.191050131725 -0.152689735333 -0.191050131709 -2801.10464395 0.728294531712 -0.152689742695 0.728294528496 -2801.44000714
1326
+ isc_fc C 1 C 2 31.8521200277 -1.73214565844 -1.45770280596 -1.73214565845 42.6480074009 9.04909872335 -1.45770280301 9.04909872098 39.1202320354
1327
+ isc_fc C 1 O 1 2.81101504079 -0.0406937892024 0.356042705931 -0.0406938003965 2.09289123888 -0.0442360147 0.356042706141 -0.0442360168606 1.6706317224
1328
+ isc_fc C 2 H 1 1.14414565227 -0.173500290471 -0.166894404479 -0.17350029037 1.20586181655 -0.0469014051319 -0.166894404049 -0.046901405484 0.99485526508
1329
+ isc_fc C 2 H 2 -0.488019233922 0.12451758949 -0.0119954139149 0.124517589368 -0.483092341025 0.170094957926 -0.0119954137686 0.170094958286 -0.39073770577
1330
+ isc_fc C 2 H 3 -0.765860440993 0.048712148947 0.12378979193 0.0487121484793 -0.509352319826 0.0759724695125 0.123789792317 0.0759724700755 -0.518874555715
1331
+ isc_fc C 2 H 4 40.0379264054 1.553077095 -4.84993950481 1.55307709563 34.8065771989 -1.3555725686 -4.84993950378 -1.35557256943 38.4908234851
1332
+ isc_fc C 2 H 5 34.9351080721 -1.05253139779 0.61218469604 -1.05253139791 42.2757584933 -4.60210322886 0.612184696098 -4.60210322888 37.660158525
1333
+ isc_fc C 2 H 6 0.216361013817 0.0878406280712 0.224067616248 0.087840628522 -0.180013124411 0.13394126665 0.224067616503 0.13394126723 0.0283503474047
1334
+ isc_fc C 2 C 1 33.0988763926 -4.00479724423 -2.88426386109 -4.0047972431 42.8683144345 8.13181995887 -2.88426386415 8.13181996122 37.6928670983
1335
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1372
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1377
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1381
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1400
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1401
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1402
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1403
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1414
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1416
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1418
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1427
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1434
+ isc H 2 C 2 -0.585680430616 0.198399605578 0.0128660309318 0.14550178373 -0.907858019491 -0.285523281542 0.0783800085424 -0.335664333495 0.0557699172386
1435
+ isc H 2 O 1 0.925680308985 -0.0618160579251 0.215811770404 -0.111886715129 1.0671316834 -0.275740363057 0.107698330175 -0.233259766783 0.697811993456
1436
+ isc H 3 H 1 -0.174486654215 0.174826215955 -0.0741710296022 0.16847313206 -0.973006462332 -0.0399365407525 -0.0205620248471 -0.0275370445833 -0.0251744585641
1437
+ isc H 3 H 2 -0.112466301606 -0.232181800953 -0.274240622793 -0.215854567289 -0.33419133672 -0.355361886804 -0.278651307319 -0.332095480566 -0.537952533761
1438
+ isc H 3 H 3 -11.6760610129 0.0389239648627 -4.63475457 0.0377952307334 8.60381419178 -0.464252825253 -4.82003469079 -0.473620432752 -7.90902347897
1439
+ isc H 3 H 4 0.834823196204 -0.038484239403 -0.0440036561035 -0.0324776649979 0.908556084483 0.103255708706 -0.0475426979489 0.106119345486 0.915213244073
1440
+ isc H 3 H 5 0.22641642479 0.00260962293405 -0.0265245430191 0.0181079061587 0.36760324601 0.0126931694775 -0.0284319079881 0.0313662159075 0.320300577274
1441
+ isc H 3 H 6 -0.100563297934 0.00589815496076 0.00988691434754 0.0191840775719 -0.0982375428087 0.101628901438 0.0362217271075 0.0402592635805 -0.0280282008519
1442
+ isc H 3 C 1 32.7186513826 -0.856204200421 3.38543177849 -0.767165636699 37.4690308196 0.591596523367 3.49068310529 0.622782767566 35.0946110477
1443
+ isc H 3 C 2 -0.424821311062 0.427643320159 0.180430780063 0.512823777012 -0.485609666544 -0.313690672451 0.127950509663 -0.273952051531 -0.923863128775
1444
+ isc H 3 O 1 -0.117691533359 0.066664328548 -0.0645599105307 -0.163390689379 0.274808540148 -0.280649206215 0.192094211638 -0.223456896036 0.240751671652
1445
+ isc H 4 H 1 0.106264252477 -0.00329971119232 -0.0191249787247 0.00678549995373 0.0817799520549 0.0590244924063 -0.00682414753215 0.0533450062552 0.04528431874
1446
+ isc H 4 H 2 0.279969715262 0.00234083525374 -0.0333489113071 0.00792536578491 0.376471477119 0.00429964297264 -0.0461896182454 0.0284737245065 0.350330478107
1447
+ isc H 4 H 3 0.838739565601 -0.0298502859437 -0.0472512750264 -0.0481634676757 0.920076777302 0.105957422252 -0.0486923697372 0.0928445743941 0.925801258544
1448
+ isc H 4 H 4 4.06040781209 -5.0256254251 -6.76437464831 -4.93420697404 7.604406207 -5.02812945735 -6.65605628281 -4.98646661419 -3.46743555013
1449
+ isc H 4 H 5 -0.172749190825 -0.211146609184 -0.279058263758 -0.178247455502 -0.311780841075 -0.33105552977 -0.318323285828 -0.338262940313 -0.554088438447
1450
+ isc H 4 H 6 0.180019337653 0.00754867698386 0.0611157715288 0.0642308243757 0.190250635206 -0.0383037405642 -0.000200151014689 -0.0837776487628 0.155975285186
1451
+ isc H 4 C 1 1.46703059168 0.398593102101 0.125866170133 0.399878742422 1.47626790187 -0.200621149363 0.0624973943779 -0.228422178524 0.839943837455
1452
+ isc H 4 C 2 34.8313806819 -0.615170286728 3.09624623454 -0.626424696804 39.9596538788 0.266388598222 2.90803201855 0.206584738846 39.2911684277
1453
+ isc H 4 O 1 1.3756918616 0.0953832727605 -1.90202701243 -0.0590283324024 0.750814082369 -0.955568315841 -1.56491189909 -0.519120730893 1.60822403405
1454
+ isc H 5 H 1 0.101750958421 -0.0457028114389 0.0167716714245 -0.0345635554182 0.134759310804 0.0371667504802 0.0237300616941 0.0265427112988 0.155033102305
1455
+ isc H 5 H 2 0.774483503752 -0.0575480329385 -0.00683176219737 -0.0478506231201 1.02823780851 0.0723612860281 -0.0145408212831 0.0818549376702 0.826258285868
1456
+ isc H 5 H 3 0.254179632739 0.0141617902454 -0.0196856331776 -0.00914104876672 0.341651366046 0.0259304982645 -0.0257433601749 0.00788129933172 0.33601231799
1457
+ isc H 5 H 4 -0.212438267573 -0.196279247917 -0.286421161011 -0.234449145778 -0.273830677095 -0.362686393762 -0.241180503396 -0.357953310222 -0.528120584505
1458
+ isc H 5 H 5 -7.97806815757 -4.49879685242 -5.2169180624 -4.3617836933 11.7533032524 -5.08193925503 -5.20045957363 -5.22444129025 5.36156356127
1459
+ isc H 5 H 6 1.17984880096 -0.0261536661101 0.175061993876 0.0212188554153 1.00554925543 -0.0111366663549 0.143064084541 -0.0369574417967 1.12107905699
1460
+ isc H 5 C 1 0.334363590358 0.0564929377599 0.0322579251143 0.0110423944319 0.00821544911402 -0.341553740772 0.0489789801213 -0.335245007716 0.948930180383
1461
+ isc H 5 C 2 40.40334991 1.7447934796 -0.737164952269 1.60622694843 36.2347013114 2.737968833 -0.670510516191 2.87622924725 38.9327436648
1462
+ isc H 5 O 1 7.05032760413 0.507769403213 -0.828210169009 0.782834524585 9.13176686547 0.135373787916 -0.912700759626 -0.215466033663 7.059156412
1463
+ isc H 6 H 1 -0.14312060858 0.00754088025044 0.047738514881 -8.28454026369e-05 -0.057168555792 0.00328657266518 0.052896359173 0.0171831924333 0.0234138715999
1464
+ isc H 6 H 2 -0.0269614765625 -0.00282460743916 0.00120461777299 -0.0338661468316 0.0421468681056 -0.0389409975216 -0.00271362673178 -0.0278373672552 -0.00428767630498
1465
+ isc H 6 H 3 -0.0853489481656 0.010497348151 0.0383212204882 0.000568036729305 -0.0583936875691 0.0404363232804 0.0132757205897 0.072250171327 -0.023601509733
1466
+ isc H 6 H 4 0.201311356646 0.0731058633305 -0.000950849712595 0.0327161567842 0.176467136988 -0.0835176876921 0.052756283177 -0.041629032184 0.151977611665
1467
+ isc H 6 H 5 1.16962978918 0.0260979473149 0.14615218636 -0.00527527324828 1.02298631666 -0.0320250689503 0.166208347926 -0.0108693233221 1.10582788762
1468
+ isc H 6 H 6 -18.7687713446 -3.67555273866 0.14451118412 -3.83817618203 6.24054408214 -2.60913691332 0.147429719909 -2.54657374015 13.8761638472
1469
+ isc H 6 C 1 0.153531855681 -0.0493901019368 -0.256331574004 -0.0725622458316 0.506949534512 -0.444292553303 -0.1368169793 -0.358030218284 0.143969816034
1470
+ isc H 6 C 2 -0.321656925841 0.749219957524 -0.645250780279 0.478175161648 1.25923203052 -0.228185709608 -0.517719173418 -0.0817056029894 -0.435551184552
1471
+ isc H 6 O 1 41.5298155885 3.87053767991 2.40197075905 4.67737612025 36.5746032841 3.74944514163 1.85634117553 3.13531309597 35.992778484
1472
+ isc O 1 H 1 2.3814248719 0.595053861624 0.716430978947 0.701021677467 3.24756470426 1.22690670403 0.762156767053 1.14304989914 3.11625214566
1473
+ isc O 1 H 2 1.11581247064 0.0256357687188 0.0348516607744 -0.0170075572746 1.09915524615 -0.189145710671 0.122751713086 -0.0785891076516 0.883989966241
1474
+ isc O 1 H 3 0.468501790422 -0.00213745228057 0.205446957902 0.111112452847 0.550356552054 -0.122894936675 -0.0622048938207 -0.0774607238982 0.22598974211
1475
+ isc O 1 H 4 1.1790644819 -0.118268986872 -1.79901520629 -0.0411371680149 1.00697559969 -0.665094827746 -1.85895459625 -0.931514215033 1.77889432978
1476
+ isc O 1 H 5 6.83529084996 1.16859534664 -1.31953936171 0.962403076145 9.59009452892 -0.120641069566 -1.28598179774 0.16897809553 6.76480531876
1477
+ isc O 1 H 6 43.2094556559 5.56276147619 1.51735336201 5.49897369013 36.4008010217 5.09293286667 1.68008117155 5.08264113455 36.1863087744
1478
+ isc O 1 C 1 -5.03359646533 -3.74418912421 -2.43422419175 -3.58830421782 4.11915008984 8.2735601603 -4.28015854016 8.28129073691 2.76448022907
1479
+ isc O 1 C 2 -21.6358972308 7.5812507502 25.2542332838 9.56566888858 -52.3552660487 6.88191840075 24.0727075218 5.53536215469 -40.2888897851
1480
+ isc O 1 O 1 -12954.4649666 59.5242259199 -49.3184606393 59.5174759308 -12913.1706944 22.3404222136 -49.6095076843 22.2358144557 -13018.8655741
1481
+ [/magres]
1482
+ `
1483
+
1484
+
1485
+ export { exampleFiles }