@caupulican/pi-adaptative 0.80.7 → 0.80.9

package/dist/core/reload-blockers.d.ts

@@ -28,6 +28,8 @@ export interface ReloadBlockerOptions {
     ownSessionFile?: string;
     activeTurnTtlMs?: number;
     coordinatorTtlMs?: number;
+    /** Auto Learn workers are memory-first, short-lived, and should not block foreground reload/adaptive work by default. */
+    includeAutoLearnSessions?: boolean;
     isProcessAlive?: (pid: number | undefined) => boolean;
 }
 export declare function isReloadSessionProcessAlive(pid: number | undefined): boolean;

package/dist/core/reload-blockers.d.ts.map

@@ -1 +1 @@
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String((error as { code?: unknown }).code) : \"\";\n\t\treturn code === \"EPERM\";\n\t}\n}\n\nfunction isOwnSession(key: string, session: ParsedSession, options: ReloadBlockerOptions): boolean {\n\tif (options.ownKey && key === options.ownKey) return true;\n\tif (options.ownPid !== undefined && session.pid === options.ownPid) return true;\n\tif (options.ownSessionId && session.sessionId === options.ownSessionId) return true;\n\tif (options.ownSessionFile && session.sessionFile === options.ownSessionFile) return true;\n\treturn false;\n}\n\nfunction addBlocker(blockers: Map<string, ReloadSessionRecord>, record: ReloadSessionRecord): void {\n\tconst identity = [\n\t\trecord.key,\n\t\trecord.pid ?? \"\",\n\t\trecord.sessionId ?? \"\",\n\t\trecord.sessionFile ?? \"\",\n\t\trecord.cwd ?? \"\",\n\t].join(\"\\0\");\n\tconst existing = blockers.get(identity);\n\tif (!existing || (existing.source === \"coordinator\" && record.source === \"active-turn\")) {\n\t\tblockers.set(identity, record);\n\t}\n}\n\nfunction activeTurnBlockers(options: ReloadBlockerOptions): ReloadSessionRecord[] {\n\tconst agentDir = options.agentDir ?? getAgentDir();\n\tconst now = options.now ?? Date.now();\n\tconst ttl = options.activeTurnTtlMs ?? ACTIVE_TURN_TTL_MS;\n\tconst isAlive = options.isProcessAlive ?? isReloadSessionProcessAlive;\n\tconst registry = readJsonFile(join(agentDir, \"pi-active-turns.json\"));\n\tif (!isRecord(registry) || !isRecord(registry.sessions)) return [];\n\n\tconst blockers: ReloadSessionRecord[] = [];\n\tfor (const [key, rawSession] of Object.entries(registry.sessions)) {\n\t\tconst session = parseSession(rawSession);\n\t\tif (!session?.active) continue;\n\t\tif (isOwnSession(key, session, options)) continue;\n\t\tif (session.updatedAt === undefined || now - session.updatedAt > ttl) continue;\n\t\tif (!isAlive(session.pid)) continue;\n\t\tblockers.push({ key, source: \"active-turn\", ...session });\n\t}\n\treturn blockers;\n}\n\nfunction coordinatorBlockers(options: ReloadBlockerOptions): { blockers: ReloadSessionRecord[]; reason: string } {\n\tconst agentDir = options.agentDir ?? getAgentDir();\n\tconst now = options.now ?? Date.now();\n\tconst ttl = options.coordinatorTtlMs ?? AUTO_RELOAD_COORDINATOR_TTL_MS;\n\tconst isAlive = options.isProcessAlive ?? isReloadSessionProcessAlive;\n\tconst coordinator = readJsonFile(join(agentDir, \"pi-auto-reload-state.json\"));\n\tif (!isRecord(coordinator) || !isRecord(coordinator.changes)) return { blockers: [], reason: \"\" };\n\n\tconst blockers: ReloadSessionRecord[] = [];\n\tlet reason = \"\";\n\tfor (const rawChange of Object.values(coordinator.changes)) {\n\t\tif (!isRecord(rawChange)) continue;\n\t\tconst firstSeenAt = numberValue(rawChange.firstSeenAt);\n\t\tif (firstSeenAt === undefined || now - firstSeenAt > ttl) continue;\n\t\treason ||= stringValue(rawChange.reason) ?? \"\";\n\t\tif (!isRecord(rawChange.sessions)) continue;\n\t\tfor (const [key, rawSession] of Object.entries(rawChange.sessions)) {\n\t\t\tconst session = parseSession(rawSession);\n\t\t\tif (!session) continue;\n\t\t\tif (session.reloadedAt !== undefined) continue;\n\t\t\tif (isOwnSession(key, session, options)) continue;\n\t\t\tif (!isAlive(session.pid)) continue;\n\t\t\tblockers.push({ key, source: \"coordinator\", reason: stringValue(rawChange.reason), ...session });\n\t\t}\n\t}\n\treturn { blockers, reason };\n}\n\nexport function describeReloadSession(\n\trecord: Pick<ReloadSessionRecord, \"key\" | \"pid\" | \"sessionId\" | \"sessionFile\" | \"cwd\">,\n): string {\n\tconst label = record.sessionId ?? record.sessionFile ?? record.cwd ?? String(record.pid ?? \"unknown\");\n\tconst parts = [`${record.key}:${label}`];\n\tif (record.pid !== undefined) parts.push(`pid=${record.pid}`);\n\tif (record.cwd) parts.push(`cwd=${record.cwd}`);\n\tif (record.sessionFile) parts.push(`file=${record.sessionFile}`);\n\treturn parts.join(\" \");\n}\n\nexport function getPendingReloadBlockers(options: ReloadBlockerOptions = {}): PendingReloadBlockers {\n\tconst byIdentity = new Map<string, ReloadSessionRecord>();\n\tfor (const blocker of activeTurnBlockers(options)) addBlocker(byIdentity, blocker);\n\tconst coordinator = coordinatorBlockers(options);\n\tfor (const blocker of coordinator.blockers) addBlocker(byIdentity, blocker);\n\tconst blockers = [...byIdentity.values()].sort((a, b) =>\n\t\tdescribeReloadSession(a).localeCompare(describeReloadSession(b)),\n\t);\n\treturn {\n\t\tpending: blockers.length > 0,\n\t\treason:\n\t\t\tcoordinator.reason ||\n\t\t\t(blockers.length ? \"Pi auto-reload is waiting for active peer/background session(s).\" : \"\"),\n\t\tblockers,\n\t\tdescriptions: blockers.map(describeReloadSession),\n\t};\n}\n"]}
+{"version":3,"file":"reload-blockers.d.ts","sourceRoot":"","sources":["../../src/core/reload-blockers.ts"],"names":[],"mappings":"AAIA,eAAO,MAAM,kBAAkB,QAAa,CAAC;AAC7C,eAAO,MAAM,8BAA8B,QAAc,CAAC;AAE1D,MAAM,WAAW,mBAAmB;IACnC,GAAG,EAAE,MAAM,CAAC;IACZ,MAAM,EAAE,aAAa,GAAG,aAAa,CAAC;IACtC,GAAG,CAAC,EAAE,MAAM,CAAC;IACb,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,GAAG,CAAC,EAAE,MAAM,CAAC;IACb,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,MAAM,CAAC,EAAE,MAAM,CAAC;CAChB;AAED,MAAM,WAAW,qBAAqB;IACrC,OAAO,EAAE,OAAO,CAAC;IACjB,MAAM,EAAE,MAAM,CAAC;IACf,QAAQ,EAAE,mBAAmB,EAAE,CAAC;IAChC,YAAY,EAAE,MAAM,EAAE,CAAC;CACvB;AAED,MAAM,WAAW,oBAAoB;IACpC,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,GAAG,CAAC,EAAE,MAAM,CAAC;IACb,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,eAAe,CAAC,EAAE,MAAM,CAAC;IACzB,gBAAgB,CAAC,EAAE,MAAM,CAAC;IAC1B,yHAAyH;IACzH,wBAAwB,CAAC,EAAE,OAAO,CAAC;IACnC,cAAc,CAAC,EAAE,CAAC,GAAG,EAAE,MAAM,GAAG,SAAS,KAAK,OAAO,CAAC;CACtD;AAqDD,wBAAgB,2BAA2B,CAAC,GAAG,EAAE,MAAM,GAAG,SAAS,GAAG,OAAO,CAU5E;AAgFD,wBAAgB,qBAAqB,CACpC,MAAM,EAAE,IAAI,CAAC,mBAAmB,EAAE,KAAK,GAAG,KAAK,GAAG,WAAW,GAAG,aAAa,GAAG,KAAK,CAAC,GACpF,MAAM,CAOR;AAED,wBAAgB,wBAAwB,CAAC,OAAO,GAAE,oBAAyB,GAAG,qBAAqB,CAgBlG","sourcesContent":["import { existsSync, readFileSync } from \"node:fs\";\nimport { join } from \"node:path\";\nimport { getAgentDir } from \"../config.ts\";\n\nexport const ACTIVE_TURN_TTL_MS = 5 * 60_000;\nexport const AUTO_RELOAD_COORDINATOR_TTL_MS = 10 * 60_000;\n\nexport interface ReloadSessionRecord {\n\tkey: string;\n\tsource: \"active-turn\" | \"coordinator\";\n\tpid?: number;\n\tsessionId?: string;\n\tsessionFile?: string;\n\tcwd?: string;\n\tactive?: boolean;\n\tupdatedAt?: number;\n\tseenAt?: number;\n\treloadedAt?: number;\n\treason?: string;\n}\n\nexport interface PendingReloadBlockers {\n\tpending: boolean;\n\treason: string;\n\tblockers: ReloadSessionRecord[];\n\tdescriptions: string[];\n}\n\nexport interface ReloadBlockerOptions {\n\tagentDir?: string;\n\tnow?: number;\n\townKey?: string;\n\townPid?: number;\n\townSessionId?: string;\n\townSessionFile?: string;\n\tactiveTurnTtlMs?: number;\n\tcoordinatorTtlMs?: number;\n\t/** Auto Learn workers are memory-first, short-lived, and should not block foreground reload/adaptive work by default. */\n\tincludeAutoLearnSessions?: boolean;\n\tisProcessAlive?: (pid: number | undefined) => boolean;\n}\n\ninterface ParsedSession {\n\tpid?: number;\n\tsessionId?: string;\n\tsessionFile?: string;\n\tcwd?: string;\n\tactive?: boolean;\n\tupdatedAt?: number;\n\tseenAt?: number;\n\treloadedAt?: number;\n}\n\nfunction isRecord(value: unknown): value is Record<string, unknown> {\n\treturn value !== null && typeof value === \"object\" && !Array.isArray(value);\n}\n\nfunction readJsonFile(file: string): unknown {\n\ttry {\n\t\tif (!existsSync(file)) return undefined;\n\t\treturn JSON.parse(readFileSync(file, \"utf8\")) as unknown;\n\t} catch {\n\t\treturn undefined;\n\t}\n}\n\nfunction stringValue(value: unknown): string | undefined {\n\treturn typeof value === \"string\" && value.length > 0 ? value : undefined;\n}\n\nfunction numberValue(value: unknown): number | undefined {\n\tif (typeof value === \"number\" && Number.isFinite(value)) return value;\n\treturn undefined;\n}\n\nfunction booleanValue(value: unknown): boolean | undefined {\n\treturn typeof value === \"boolean\" ? value : undefined;\n}\n\nfunction parseSession(value: unknown): ParsedSession | undefined {\n\tif (!isRecord(value)) return undefined;\n\treturn {\n\t\tpid: numberValue(value.pid),\n\t\tsessionId: stringValue(value.sessionId),\n\t\tsessionFile: stringValue(value.sessionFile),\n\t\tcwd: stringValue(value.cwd),\n\t\tactive: booleanValue(value.active),\n\t\tupdatedAt: numberValue(value.updatedAt),\n\t\tseenAt: numberValue(value.seenAt),\n\t\treloadedAt: numberValue(value.reloadedAt),\n\t};\n}\n\nexport function isReloadSessionProcessAlive(pid: number | undefined): boolean {\n\tif (pid === undefined || !Number.isFinite(pid) || pid <= 0) return false;\n\ttry {\n\t\tprocess.kill(pid, 0);\n\t\treturn true;\n\t} catch (error) {\n\t\tconst code =\n\t\t\terror && typeof error === \"object\" && \"code\" in error ? String((error as { code?: unknown }).code) : \"\";\n\t\treturn code === \"EPERM\";\n\t}\n}\n\nfunction isOwnSession(key: string, session: ParsedSession, options: ReloadBlockerOptions): boolean {\n\tif (options.ownKey && key === options.ownKey) return true;\n\tif (options.ownPid !== undefined && session.pid === options.ownPid) return true;\n\tif (options.ownSessionId && session.sessionId === options.ownSessionId) return true;\n\tif (options.ownSessionFile && session.sessionFile === options.ownSessionFile) return true;\n\treturn false;\n}\n\nfunction isAutoLearnSession(session: ParsedSession): boolean {\n\treturn !!session.sessionId?.startsWith(\"auto-learn-\");\n}\n\nfunction shouldIgnoreSession(session: ParsedSession, options: ReloadBlockerOptions): boolean {\n\treturn options.includeAutoLearnSessions !== true && isAutoLearnSession(session);\n}\n\nfunction addBlocker(blockers: Map<string, ReloadSessionRecord>, record: ReloadSessionRecord): void {\n\tconst identity = [\n\t\trecord.key,\n\t\trecord.pid ?? \"\",\n\t\trecord.sessionId ?? \"\",\n\t\trecord.sessionFile ?? \"\",\n\t\trecord.cwd ?? \"\",\n\t].join(\"\\0\");\n\tconst existing = blockers.get(identity);\n\tif (!existing || (existing.source === \"coordinator\" && record.source === \"active-turn\")) {\n\t\tblockers.set(identity, record);\n\t}\n}\n\nfunction activeTurnBlockers(options: ReloadBlockerOptions): ReloadSessionRecord[] {\n\tconst agentDir = options.agentDir ?? getAgentDir();\n\tconst now = options.now ?? Date.now();\n\tconst ttl = options.activeTurnTtlMs ?? ACTIVE_TURN_TTL_MS;\n\tconst isAlive = options.isProcessAlive ?? isReloadSessionProcessAlive;\n\tconst registry = readJsonFile(join(agentDir, \"pi-active-turns.json\"));\n\tif (!isRecord(registry) || !isRecord(registry.sessions)) return [];\n\n\tconst blockers: ReloadSessionRecord[] = [];\n\tfor (const [key, rawSession] of Object.entries(registry.sessions)) {\n\t\tconst session = parseSession(rawSession);\n\t\tif (!session?.active) continue;\n\t\tif (isOwnSession(key, session, options) || shouldIgnoreSession(session, options)) continue;\n\t\tif (session.updatedAt === undefined || now - session.updatedAt > ttl) continue;\n\t\tif (!isAlive(session.pid)) continue;\n\t\tblockers.push({ key, source: \"active-turn\", ...session });\n\t}\n\treturn blockers;\n}\n\nfunction coordinatorBlockers(options: ReloadBlockerOptions): { blockers: ReloadSessionRecord[]; reason: string } {\n\tconst agentDir = options.agentDir ?? getAgentDir();\n\tconst now = options.now ?? Date.now();\n\tconst ttl = options.coordinatorTtlMs ?? AUTO_RELOAD_COORDINATOR_TTL_MS;\n\tconst isAlive = options.isProcessAlive ?? isReloadSessionProcessAlive;\n\tconst coordinator = readJsonFile(join(agentDir, \"pi-auto-reload-state.json\"));\n\tif (!isRecord(coordinator) || !isRecord(coordinator.changes)) return { blockers: [], reason: \"\" };\n\n\tconst blockers: ReloadSessionRecord[] = [];\n\tlet reason = \"\";\n\tfor (const rawChange of Object.values(coordinator.changes)) {\n\t\tif (!isRecord(rawChange)) continue;\n\t\tconst firstSeenAt = numberValue(rawChange.firstSeenAt);\n\t\tif (firstSeenAt === undefined || now - firstSeenAt > ttl) continue;\n\t\treason ||= stringValue(rawChange.reason) ?? \"\";\n\t\tif (!isRecord(rawChange.sessions)) continue;\n\t\tfor (const [key, rawSession] of Object.entries(rawChange.sessions)) {\n\t\t\tconst session = parseSession(rawSession);\n\t\t\tif (!session) continue;\n\t\t\tif (session.reloadedAt !== undefined) continue;\n\t\t\tif (isOwnSession(key, session, options) || shouldIgnoreSession(session, options)) continue;\n\t\t\tif (!isAlive(session.pid)) continue;\n\t\t\tblockers.push({ key, source: \"coordinator\", reason: stringValue(rawChange.reason), ...session });\n\t\t}\n\t}\n\treturn { blockers, reason };\n}\n\nexport function describeReloadSession(\n\trecord: Pick<ReloadSessionRecord, \"key\" | \"pid\" | \"sessionId\" | \"sessionFile\" | \"cwd\">,\n): string {\n\tconst label = record.sessionId ?? record.sessionFile ?? record.cwd ?? String(record.pid ?? \"unknown\");\n\tconst parts = [`${record.key}:${label}`];\n\tif (record.pid !== undefined) parts.push(`pid=${record.pid}`);\n\tif (record.cwd) parts.push(`cwd=${record.cwd}`);\n\tif (record.sessionFile) parts.push(`file=${record.sessionFile}`);\n\treturn parts.join(\" \");\n}\n\nexport function getPendingReloadBlockers(options: ReloadBlockerOptions = {}): PendingReloadBlockers {\n\tconst byIdentity = new Map<string, ReloadSessionRecord>();\n\tfor (const blocker of activeTurnBlockers(options)) addBlocker(byIdentity, blocker);\n\tconst coordinator = coordinatorBlockers(options);\n\tfor (const blocker of coordinator.blockers) addBlocker(byIdentity, blocker);\n\tconst blockers = [...byIdentity.values()].sort((a, b) =>\n\t\tdescribeReloadSession(a).localeCompare(describeReloadSession(b)),\n\t);\n\treturn {\n\t\tpending: blockers.length > 0,\n\t\treason:\n\t\t\tcoordinator.reason ||\n\t\t\t(blockers.length ? \"Pi auto-reload is waiting for active peer/background session(s).\" : \"\"),\n\t\tblockers,\n\t\tdescriptions: blockers.map(describeReloadSession),\n\t};\n}\n"]}

package/dist/core/reload-blockers.js

@@ -64,6 +64,12 @@ function isOwnSession(key, session, options) {
         return true;
     return false;
 }
+function isAutoLearnSession(session) {
+    return !!session.sessionId?.startsWith("auto-learn-");
+}
+function shouldIgnoreSession(session, options) {
+    return options.includeAutoLearnSessions !== true && isAutoLearnSession(session);
+}
 function addBlocker(blockers, record) {
     const identity = [
         record.key,
@@ -90,7 +96,7 @@ function activeTurnBlockers(options) {
         const session = parseSession(rawSession);
         if (!session?.active)
             continue;
-        if (isOwnSession(key, session, options))
+        if (isOwnSession(key, session, options) || shouldIgnoreSession(session, options))
             continue;
         if (session.updatedAt === undefined || now - session.updatedAt > ttl)
             continue;
@@ -125,7 +131,7 @@ function coordinatorBlockers(options) {
                 continue;
             if (session.reloadedAt !== undefined)
                 continue;
-            if (isOwnSession(key, session, options))
+            if (isOwnSession(key, session, options) || shouldIgnoreSession(session, options))
                 continue;
             if (!isAlive(session.pid))
                 continue;

package/dist/core/reload-blockers.js.map

@@ -1 +1 @@
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{ existsSync, readFileSync } from \"node:fs\";\nimport { join } from \"node:path\";\nimport { getAgentDir } from \"../config.ts\";\n\nexport const ACTIVE_TURN_TTL_MS = 5 * 60_000;\nexport const AUTO_RELOAD_COORDINATOR_TTL_MS = 10 * 60_000;\n\nexport interface ReloadSessionRecord {\n\tkey: string;\n\tsource: \"active-turn\" | \"coordinator\";\n\tpid?: number;\n\tsessionId?: string;\n\tsessionFile?: string;\n\tcwd?: string;\n\tactive?: boolean;\n\tupdatedAt?: number;\n\tseenAt?: number;\n\treloadedAt?: number;\n\treason?: string;\n}\n\nexport interface PendingReloadBlockers {\n\tpending: boolean;\n\treason: string;\n\tblockers: ReloadSessionRecord[];\n\tdescriptions: string[];\n}\n\nexport interface ReloadBlockerOptions {\n\tagentDir?: string;\n\tnow?: number;\n\townKey?: string;\n\townPid?: number;\n\townSessionId?: string;\n\townSessionFile?: string;\n\tactiveTurnTtlMs?: number;\n\tcoordinatorTtlMs?: number;\n\tisProcessAlive?: (pid: number | undefined) => boolean;\n}\n\ninterface ParsedSession {\n\tpid?: number;\n\tsessionId?: string;\n\tsessionFile?: string;\n\tcwd?: string;\n\tactive?: boolean;\n\tupdatedAt?: number;\n\tseenAt?: number;\n\treloadedAt?: number;\n}\n\nfunction isRecord(value: unknown): value is Record<string, unknown> {\n\treturn value !== null && typeof value === \"object\" && !Array.isArray(value);\n}\n\nfunction readJsonFile(file: string): unknown {\n\ttry {\n\t\tif (!existsSync(file)) return undefined;\n\t\treturn JSON.parse(readFileSync(file, \"utf8\")) as unknown;\n\t} catch {\n\t\treturn undefined;\n\t}\n}\n\nfunction stringValue(value: unknown): string | undefined {\n\treturn typeof value === \"string\" && value.length > 0 ? value : undefined;\n}\n\nfunction numberValue(value: unknown): number | undefined {\n\tif (typeof value === \"number\" && Number.isFinite(value)) return value;\n\treturn undefined;\n}\n\nfunction booleanValue(value: unknown): boolean | undefined {\n\treturn typeof value === \"boolean\" ? value : undefined;\n}\n\nfunction parseSession(value: unknown): ParsedSession | undefined {\n\tif (!isRecord(value)) return undefined;\n\treturn {\n\t\tpid: numberValue(value.pid),\n\t\tsessionId: stringValue(value.sessionId),\n\t\tsessionFile: stringValue(value.sessionFile),\n\t\tcwd: stringValue(value.cwd),\n\t\tactive: booleanValue(value.active),\n\t\tupdatedAt: numberValue(value.updatedAt),\n\t\tseenAt: numberValue(value.seenAt),\n\t\treloadedAt: numberValue(value.reloadedAt),\n\t};\n}\n\nexport function isReloadSessionProcessAlive(pid: number | undefined): boolean {\n\tif (pid === undefined || !Number.isFinite(pid) || pid <= 0) return false;\n\ttry {\n\t\tprocess.kill(pid, 0);\n\t\treturn true;\n\t} catch (error) {\n\t\tconst code =\n\t\t\terror && typeof error === \"object\" && \"code\" in error ? String((error as { code?: unknown }).code) : \"\";\n\t\treturn code === \"EPERM\";\n\t}\n}\n\nfunction isOwnSession(key: string, session: ParsedSession, options: ReloadBlockerOptions): boolean {\n\tif (options.ownKey && key === options.ownKey) return true;\n\tif (options.ownPid !== undefined && session.pid === options.ownPid) return true;\n\tif (options.ownSessionId && session.sessionId === options.ownSessionId) return true;\n\tif (options.ownSessionFile && session.sessionFile === options.ownSessionFile) return true;\n\treturn false;\n}\n\nfunction addBlocker(blockers: Map<string, ReloadSessionRecord>, record: ReloadSessionRecord): void {\n\tconst identity = [\n\t\trecord.key,\n\t\trecord.pid ?? \"\",\n\t\trecord.sessionId ?? \"\",\n\t\trecord.sessionFile ?? \"\",\n\t\trecord.cwd ?? \"\",\n\t].join(\"\\0\");\n\tconst existing = blockers.get(identity);\n\tif (!existing || (existing.source === \"coordinator\" && record.source === \"active-turn\")) {\n\t\tblockers.set(identity, record);\n\t}\n}\n\nfunction activeTurnBlockers(options: ReloadBlockerOptions): ReloadSessionRecord[] {\n\tconst agentDir = options.agentDir ?? getAgentDir();\n\tconst now = options.now ?? Date.now();\n\tconst ttl = options.activeTurnTtlMs ?? ACTIVE_TURN_TTL_MS;\n\tconst isAlive = options.isProcessAlive ?? isReloadSessionProcessAlive;\n\tconst registry = readJsonFile(join(agentDir, \"pi-active-turns.json\"));\n\tif (!isRecord(registry) || !isRecord(registry.sessions)) return [];\n\n\tconst blockers: ReloadSessionRecord[] = [];\n\tfor (const [key, rawSession] of Object.entries(registry.sessions)) {\n\t\tconst session = parseSession(rawSession);\n\t\tif (!session?.active) continue;\n\t\tif (isOwnSession(key, session, options)) continue;\n\t\tif (session.updatedAt === undefined || now - session.updatedAt > ttl) continue;\n\t\tif (!isAlive(session.pid)) continue;\n\t\tblockers.push({ key, source: \"active-turn\", ...session });\n\t}\n\treturn blockers;\n}\n\nfunction coordinatorBlockers(options: ReloadBlockerOptions): { blockers: ReloadSessionRecord[]; reason: string } {\n\tconst agentDir = options.agentDir ?? getAgentDir();\n\tconst now = options.now ?? Date.now();\n\tconst ttl = options.coordinatorTtlMs ?? AUTO_RELOAD_COORDINATOR_TTL_MS;\n\tconst isAlive = options.isProcessAlive ?? isReloadSessionProcessAlive;\n\tconst coordinator = readJsonFile(join(agentDir, \"pi-auto-reload-state.json\"));\n\tif (!isRecord(coordinator) || !isRecord(coordinator.changes)) return { blockers: [], reason: \"\" };\n\n\tconst blockers: ReloadSessionRecord[] = [];\n\tlet reason = \"\";\n\tfor (const rawChange of Object.values(coordinator.changes)) {\n\t\tif (!isRecord(rawChange)) continue;\n\t\tconst firstSeenAt = numberValue(rawChange.firstSeenAt);\n\t\tif (firstSeenAt === undefined || now - firstSeenAt > ttl) continue;\n\t\treason ||= stringValue(rawChange.reason) ?? \"\";\n\t\tif (!isRecord(rawChange.sessions)) continue;\n\t\tfor (const [key, rawSession] of Object.entries(rawChange.sessions)) {\n\t\t\tconst session = parseSession(rawSession);\n\t\t\tif (!session) continue;\n\t\t\tif (session.reloadedAt !== undefined) continue;\n\t\t\tif (isOwnSession(key, session, options)) continue;\n\t\t\tif (!isAlive(session.pid)) continue;\n\t\t\tblockers.push({ key, source: \"coordinator\", reason: stringValue(rawChange.reason), ...session });\n\t\t}\n\t}\n\treturn { blockers, reason };\n}\n\nexport function describeReloadSession(\n\trecord: Pick<ReloadSessionRecord, \"key\" | \"pid\" | \"sessionId\" | \"sessionFile\" | \"cwd\">,\n): string {\n\tconst label = record.sessionId ?? record.sessionFile ?? record.cwd ?? String(record.pid ?? \"unknown\");\n\tconst parts = [`${record.key}:${label}`];\n\tif (record.pid !== undefined) parts.push(`pid=${record.pid}`);\n\tif (record.cwd) parts.push(`cwd=${record.cwd}`);\n\tif (record.sessionFile) parts.push(`file=${record.sessionFile}`);\n\treturn parts.join(\" \");\n}\n\nexport function getPendingReloadBlockers(options: ReloadBlockerOptions = {}): PendingReloadBlockers {\n\tconst byIdentity = new Map<string, ReloadSessionRecord>();\n\tfor (const blocker of activeTurnBlockers(options)) addBlocker(byIdentity, blocker);\n\tconst coordinator = coordinatorBlockers(options);\n\tfor (const blocker of coordinator.blockers) addBlocker(byIdentity, blocker);\n\tconst blockers = [...byIdentity.values()].sort((a, b) =>\n\t\tdescribeReloadSession(a).localeCompare(describeReloadSession(b)),\n\t);\n\treturn {\n\t\tpending: blockers.length > 0,\n\t\treason:\n\t\t\tcoordinator.reason ||\n\t\t\t(blockers.length ? \"Pi auto-reload is waiting for active peer/background session(s).\" : \"\"),\n\t\tblockers,\n\t\tdescriptions: blockers.map(describeReloadSession),\n\t};\n}\n"]}
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Date.now();\n\tconst ttl = options.activeTurnTtlMs ?? 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Date.now();\n\tconst ttl = options.coordinatorTtlMs ?? AUTO_RELOAD_COORDINATOR_TTL_MS;\n\tconst isAlive = options.isProcessAlive ?? isReloadSessionProcessAlive;\n\tconst coordinator = readJsonFile(join(agentDir, \"pi-auto-reload-state.json\"));\n\tif (!isRecord(coordinator) || !isRecord(coordinator.changes)) return { blockers: [], reason: \"\" };\n\n\tconst blockers: ReloadSessionRecord[] = [];\n\tlet reason = \"\";\n\tfor (const rawChange of Object.values(coordinator.changes)) {\n\t\tif (!isRecord(rawChange)) continue;\n\t\tconst firstSeenAt = numberValue(rawChange.firstSeenAt);\n\t\tif (firstSeenAt === undefined || now - firstSeenAt > ttl) continue;\n\t\treason ||= stringValue(rawChange.reason) ?? \"\";\n\t\tif (!isRecord(rawChange.sessions)) continue;\n\t\tfor (const [key, rawSession] of Object.entries(rawChange.sessions)) {\n\t\t\tconst session = parseSession(rawSession);\n\t\t\tif (!session) continue;\n\t\t\tif (session.reloadedAt !== undefined) continue;\n\t\t\tif (isOwnSession(key, session, options) || shouldIgnoreSession(session, options)) continue;\n\t\t\tif (!isAlive(session.pid)) continue;\n\t\t\tblockers.push({ key, source: \"coordinator\", reason: stringValue(rawChange.reason), ...session });\n\t\t}\n\t}\n\treturn { blockers, reason };\n}\n\nexport function describeReloadSession(\n\trecord: Pick<ReloadSessionRecord, \"key\" | \"pid\" | \"sessionId\" | \"sessionFile\" | \"cwd\">,\n): string {\n\tconst label = record.sessionId ?? record.sessionFile ?? record.cwd ?? String(record.pid ?? \"unknown\");\n\tconst parts = [`${record.key}:${label}`];\n\tif (record.pid !== undefined) parts.push(`pid=${record.pid}`);\n\tif (record.cwd) parts.push(`cwd=${record.cwd}`);\n\tif (record.sessionFile) parts.push(`file=${record.sessionFile}`);\n\treturn parts.join(\" \");\n}\n\nexport function getPendingReloadBlockers(options: ReloadBlockerOptions = {}): PendingReloadBlockers {\n\tconst byIdentity = new Map<string, ReloadSessionRecord>();\n\tfor (const blocker of activeTurnBlockers(options)) addBlocker(byIdentity, blocker);\n\tconst coordinator = coordinatorBlockers(options);\n\tfor (const blocker of coordinator.blockers) addBlocker(byIdentity, blocker);\n\tconst blockers = [...byIdentity.values()].sort((a, b) =>\n\t\tdescribeReloadSession(a).localeCompare(describeReloadSession(b)),\n\t);\n\treturn {\n\t\tpending: blockers.length > 0,\n\t\treason:\n\t\t\tcoordinator.reason ||\n\t\t\t(blockers.length ? \"Pi auto-reload is waiting for active peer/background session(s).\" : \"\"),\n\t\tblockers,\n\t\tdescriptions: blockers.map(describeReloadSession),\n\t};\n}\n"]}

package/dist/core/resource-loader.d.ts

@@ -50,6 +50,7 @@ export declare function scanContextFileThreats(content: string): string[];
 export declare function loadProjectContextFiles(options: {
     cwd: string;
     agentDir: string;
+    projectTrusted?: boolean;
 }): Array<{
     path: string;
     content?: string;

package/dist/core/resource-loader.d.ts.map

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{ existsSync, readdirSync, readFileSync, statSync } from \"node:fs\";\nimport { join, resolve, sep } from \"node:path\";\nimport chalk from \"chalk\";\nimport { CONFIG_DIR_NAME } from \"../config.ts\";\nimport { loadThemeFromPath, type Theme } from \"../modes/interactive/theme/theme.ts\";\nimport type { ResourceDiagnostic } from \"./diagnostics.ts\";\n\nexport type { ResourceCollision, ResourceDiagnostic } from \"./diagnostics.ts\";\n\nimport { canonicalizePath, isLocalPath, resolvePath } from \"../utils/paths.ts\";\nimport { createEventBus, type EventBus } from \"./event-bus.ts\";\nimport { createExtensionRuntime, loadExtensionFromFactory, loadExtensions } from \"./extensions/loader.ts\";\nimport type { Extension, ExtensionFactory, ExtensionRuntime, LoadExtensionsResult } from \"./extensions/types.ts\";\nimport { DefaultPackageManager, type PathMetadata } from \"./package-manager.ts\";\nimport type { PromptTemplate } from \"./prompt-templates.ts\";\nimport { loadPromptTemplates } from \"./prompt-templates.ts\";\nimport { SettingsManager } from \"./settings-manager.ts\";\nimport type { Skill } from \"./skills.ts\";\nimport { loadSkills } from \"./skills.ts\";\nimport { createSourceInfo, type SourceInfo } from \"./source-info.ts\";\n\nexport interface ResourceExtensionPaths {\n\tskillPaths?: Array<{ path: string; metadata: PathMetadata }>;\n\tpromptPaths?: Array<{ path: string; metadata: PathMetadata }>;\n\tthemePaths?: Array<{ path: string; metadata: PathMetadata }>;\n}\n\nexport interface ResourceLoader {\n\tgetExtensions(): LoadExtensionsResult;\n\tgetSkills(): { skills: Skill[]; diagnostics: ResourceDiagnostic[] };\n\tgetPrompts(): { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] };\n\tgetThemes(): { themes: Theme[]; diagnostics: ResourceDiagnostic[] };\n\tgetAgentsFiles(): { agentsFiles: Array<{ path: string; content?: string }> };\n\tgetSystemPrompt(): string | undefined;\n\tgetAppendSystemPrompt(): string[];\n\textendResources(paths: ResourceExtensionPaths): void;\n\treload(): Promise<void>;\n}\n\nfunction resolvePromptInput(input: string | undefined, description: string): string | undefined {\n\tif (!input) {\n\t\treturn undefined;\n\t}\n\n\tif (existsSync(input)) {\n\t\ttry {\n\t\t\treturn readFileSync(input, \"utf-8\");\n\t\t} catch (error) {\n\t\t\tconsole.error(chalk.yellow(`Warning: Could not read ${description} file ${input}: ${error}`));\n\t\t\treturn input;\n\t\t}\n\t}\n\n\treturn input;\n}\n\nconst CONTEXT_THREAT_PATTERNS: Array<{ label: string; pattern: RegExp }> = [\n\t{\n\t\tlabel: \"instruction override\",\n\t\tpattern:\n\t\t\t/\\b(?:ignore|disregard|override|bypass)\\b.{0,80}\\b(?:previous|prior|above|system|developer|agent)\\b.{0,80}\\binstructions?\\b/i,\n\t},\n\t{\n\t\tlabel: \"secret exfiltration\",\n\t\tpattern:\n\t\t\t/\\b(?:reveal|print|dump|exfiltrate|send|upload)\\b.{0,80}\\b(?:secrets?|tokens?|api[_ -]?keys?|credentials?|environment variables?|\\.env)\\b/i,\n\t},\n\t{\n\t\tlabel: \"hidden instruction\",\n\t\tpattern: /\\b(?:do not tell|don't tell|hide this from)\\b.{0,80}\\b(?:user|operator|developer)\\b/i,\n\t},\n];\n\nexport function scanContextFileThreats(content: string): string[] {\n\treturn CONTEXT_THREAT_PATTERNS.filter(({ pattern }) => pattern.test(content)).map(({ label }) => label);\n}\n\nfunction sanitizeContextFileContent(filePath: string, content: string): string {\n\tconst findings = scanContextFileThreats(content);\n\tif (findings.length === 0) return content;\n\tconsole.error(chalk.yellow(`Warning: Blocked context file ${filePath}: ${findings.join(\", \")}`));\n\treturn `[BLOCKED: ${filePath} contained potential prompt injection (${findings.join(\", \")}). Content not loaded.]`;\n}\n\nfunction loadContextFilesFromDir(dir: string): Array<{ path: string; content: string }> {\n\tconst candidates = [\"AGENTS.md\", \"AGENTS.MD\", \"CLAUDE.md\", \"CLAUDE.MD\", \"GEMINI.md\", \"GEMINI.MD\"];\n\tconst files: Array<{ path: string; content: string }> = [];\n\tfor (const filename of candidates) {\n\t\tconst filePath = join(dir, filename);\n\t\tif (existsSync(filePath)) {\n\t\t\ttry {\n\t\t\t\tconst content = readFileSync(filePath, \"utf-8\");\n\t\t\t\tfiles.push({\n\t\t\t\t\tpath: filePath,\n\t\t\t\t\tcontent: sanitizeContextFileContent(filePath, content),\n\t\t\t\t});\n\t\t\t} catch (error) {\n\t\t\t\tconsole.error(chalk.yellow(`Warning: Could not read ${filePath}: ${error}`));\n\t\t\t}\n\t\t}\n\t}\n\treturn files;\n}\n\nexport function loadProjectContextFiles(options: {\n\tcwd: string;\n\tagentDir: string;\n}): Array<{ path: string; content?: string }> {\n\tconst resolvedCwd = resolvePath(options.cwd);\n\tconst resolvedAgentDir = resolvePath(options.agentDir);\n\n\tconst contextFiles: Array<{ path: string; content?: string }> = [];\n\tconst seenPaths = new Set<string>();\n\n\tfor (const globalContext of loadContextFilesFromDir(resolvedAgentDir)) {\n\t\tcontextFiles.push(globalContext);\n\t\tseenPaths.add(globalContext.path);\n\t}\n\n\tconst ancestorContextFiles: Array<{ path: string; content?: string }> = [];\n\n\tlet currentDir = resolvedCwd;\n\tconst root = resolve(\"/\");\n\n\twhile (true) {\n\t\tconst contextFilesInDir = loadContextFilesFromDir(currentDir).filter(\n\t\t\t(contextFile) => !seenPaths.has(contextFile.path),\n\t\t);\n\t\tif (contextFilesInDir.length > 0) {\n\t\t\tancestorContextFiles.unshift(...contextFilesInDir);\n\t\t\tfor (const contextFile of contextFilesInDir) {\n\t\t\t\tseenPaths.add(contextFile.path);\n\t\t\t}\n\t\t}\n\n\t\tif (currentDir === root) break;\n\n\t\tconst parentDir = resolve(currentDir, \"..\");\n\t\tif (parentDir === currentDir) break;\n\t\tcurrentDir = parentDir;\n\t}\n\n\tcontextFiles.push(...ancestorContextFiles);\n\n\treturn contextFiles;\n}\n\nexport interface DefaultResourceLoaderOptions {\n\tcwd: string;\n\tagentDir: string;\n\tsettingsManager?: SettingsManager;\n\teventBus?: EventBus;\n\tadditionalExtensionPaths?: string[];\n\tadditionalSkillPaths?: string[];\n\tadditionalPromptTemplatePaths?: string[];\n\tadditionalThemePaths?: string[];\n\textensionFactories?: ExtensionFactory[];\n\tnoExtensions?: boolean;\n\tnoSkills?: boolean;\n\tnoPromptTemplates?: boolean;\n\tnoThemes?: boolean;\n\tnoContextFiles?: boolean;\n\tsystemPrompt?: string;\n\tappendSystemPrompt?: string[];\n\textensionsOverride?: (base: LoadExtensionsResult) => LoadExtensionsResult;\n\tskillsOverride?: (base: { skills: Skill[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tskills: Skill[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tpromptsOverride?: (base: { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tprompts: PromptTemplate[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tthemesOverride?: (base: { themes: Theme[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tthemes: Theme[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tagentsFilesOverride?: (base: { agentsFiles: Array<{ path: string; content?: string }> }) => {\n\t\tagentsFiles: Array<{ path: string; content?: string }>;\n\t};\n\tsystemPromptOverride?: (base: string | undefined) => string | undefined;\n\tappendSystemPromptOverride?: (base: string[]) => string[];\n}\n\nexport class DefaultResourceLoader implements ResourceLoader {\n\tprivate cwd: string;\n\tprivate agentDir: string;\n\tprivate settingsManager: SettingsManager;\n\tprivate eventBus: EventBus;\n\tprivate packageManager: DefaultPackageManager;\n\tprivate additionalExtensionPaths: string[];\n\tprivate additionalSkillPaths: string[];\n\tprivate additionalPromptTemplatePaths: string[];\n\tprivate additionalThemePaths: string[];\n\tprivate extensionFactories: ExtensionFactory[];\n\tprivate noExtensions: boolean;\n\tprivate noSkills: boolean;\n\tprivate noPromptTemplates: boolean;\n\tprivate noThemes: boolean;\n\tprivate noContextFiles: boolean;\n\tprivate systemPromptSource?: string;\n\tprivate appendSystemPromptSource?: string[];\n\tprivate extensionsOverride?: (base: LoadExtensionsResult) => LoadExtensionsResult;\n\tprivate skillsOverride?: (base: { skills: Skill[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tskills: Skill[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tprivate promptsOverride?: (base: { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tprompts: PromptTemplate[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tprivate themesOverride?: (base: { themes: Theme[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tthemes: Theme[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tprivate agentsFilesOverride?: (base: { agentsFiles: Array<{ path: string; content?: string }> }) => {\n\t\tagentsFiles: Array<{ path: string; content?: string }>;\n\t};\n\tprivate systemPromptOverride?: (base: string | undefined) => string | undefined;\n\tprivate appendSystemPromptOverride?: (base: string[]) => string[];\n\n\tprivate extensionsResult: LoadExtensionsResult;\n\tprivate skills: Skill[];\n\tprivate skillDiagnostics: ResourceDiagnostic[];\n\tprivate prompts: PromptTemplate[];\n\tprivate promptDiagnostics: ResourceDiagnostic[];\n\tprivate themes: Theme[];\n\tprivate themeDiagnostics: ResourceDiagnostic[];\n\tprivate agentsFiles: Array<{ path: string; content?: string }>;\n\tprivate systemPrompt?: string;\n\tprivate appendSystemPrompt: string[];\n\tprivate lastSkillPaths: string[];\n\tprivate extensionSkillSourceInfos: Map<string, SourceInfo>;\n\tprivate extensionPromptSourceInfos: Map<string, SourceInfo>;\n\tprivate extensionThemeSourceInfos: Map<string, SourceInfo>;\n\tprivate lastPromptPaths: string[];\n\tprivate lastThemePaths: string[];\n\n\tconstructor(options: DefaultResourceLoaderOptions) {\n\t\tthis.cwd = resolvePath(options.cwd);\n\t\tthis.agentDir = resolvePath(options.agentDir);\n\t\tthis.settingsManager = options.settingsManager ?? SettingsManager.create(this.cwd, this.agentDir);\n\t\tthis.eventBus = options.eventBus ?? createEventBus();\n\t\tthis.packageManager = new DefaultPackageManager({\n\t\t\tcwd: this.cwd,\n\t\t\tagentDir: this.agentDir,\n\t\t\tsettingsManager: this.settingsManager,\n\t\t});\n\t\tthis.additionalExtensionPaths = options.additionalExtensionPaths ?? [];\n\t\tthis.additionalSkillPaths = options.additionalSkillPaths ?? [];\n\t\tthis.additionalPromptTemplatePaths = options.additionalPromptTemplatePaths ?? [];\n\t\tthis.additionalThemePaths = options.additionalThemePaths ?? [];\n\t\tthis.extensionFactories = options.extensionFactories ?? [];\n\t\tthis.noExtensions = options.noExtensions ?? false;\n\t\tthis.noSkills = options.noSkills ?? false;\n\t\tthis.noPromptTemplates = options.noPromptTemplates ?? false;\n\t\tthis.noThemes = options.noThemes ?? false;\n\t\tthis.noContextFiles = options.noContextFiles ?? false;\n\t\tthis.systemPromptSource = options.systemPrompt;\n\t\tthis.appendSystemPromptSource = options.appendSystemPrompt;\n\t\tthis.extensionsOverride = options.extensionsOverride;\n\t\tthis.skillsOverride = options.skillsOverride;\n\t\tthis.promptsOverride = options.promptsOverride;\n\t\tthis.themesOverride = options.themesOverride;\n\t\tthis.agentsFilesOverride = options.agentsFilesOverride;\n\t\tthis.systemPromptOverride = options.systemPromptOverride;\n\t\tthis.appendSystemPromptOverride = options.appendSystemPromptOverride;\n\n\t\tthis.extensionsResult = { extensions: [], errors: [], runtime: createExtensionRuntime() };\n\t\tthis.skills = [];\n\t\tthis.skillDiagnostics = [];\n\t\tthis.prompts = [];\n\t\tthis.promptDiagnostics = [];\n\t\tthis.themes = [];\n\t\tthis.themeDiagnostics = [];\n\t\tthis.agentsFiles = [];\n\t\tthis.appendSystemPrompt = [];\n\t\tthis.lastSkillPaths = [];\n\t\tthis.extensionSkillSourceInfos = new Map();\n\t\tthis.extensionPromptSourceInfos = new Map();\n\t\tthis.extensionThemeSourceInfos = new Map();\n\t\tthis.lastPromptPaths = [];\n\t\tthis.lastThemePaths = [];\n\t}\n\n\tgetExtensions(): LoadExtensionsResult {\n\t\treturn this.extensionsResult;\n\t}\n\n\tgetSkills(): { skills: Skill[]; diagnostics: ResourceDiagnostic[] } {\n\t\treturn { skills: this.skills, diagnostics: this.skillDiagnostics };\n\t}\n\n\tgetPrompts(): { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] } {\n\t\treturn { prompts: this.prompts, diagnostics: this.promptDiagnostics };\n\t}\n\n\tgetThemes(): { themes: Theme[]; diagnostics: ResourceDiagnostic[] } {\n\t\treturn { themes: this.themes, diagnostics: this.themeDiagnostics };\n\t}\n\n\tgetAgentsFiles(): { agentsFiles: Array<{ path: string; content?: string }> } {\n\t\treturn { agentsFiles: this.agentsFiles };\n\t}\n\n\tgetSystemPrompt(): string | undefined {\n\t\treturn this.systemPrompt;\n\t}\n\n\tgetAppendSystemPrompt(): string[] {\n\t\treturn this.appendSystemPrompt;\n\t}\n\n\textendResources(paths: ResourceExtensionPaths): void {\n\t\tconst skillPaths = this.normalizeExtensionPaths(paths.skillPaths ?? []);\n\t\tconst promptPaths = this.normalizeExtensionPaths(paths.promptPaths ?? []);\n\t\tconst themePaths = this.normalizeExtensionPaths(paths.themePaths ?? []);\n\n\t\tfor (const entry of skillPaths) {\n\t\t\tthis.extensionSkillSourceInfos.set(entry.path, createSourceInfo(entry.path, entry.metadata));\n\t\t}\n\t\tfor (const entry of promptPaths) {\n\t\t\tthis.extensionPromptSourceInfos.set(entry.path, createSourceInfo(entry.path, entry.metadata));\n\t\t}\n\t\tfor (const entry of themePaths) {\n\t\t\tthis.extensionThemeSourceInfos.set(entry.path, createSourceInfo(entry.path, entry.metadata));\n\t\t}\n\n\t\tif (skillPaths.length > 0) {\n\t\t\tthis.lastSkillPaths = this.mergePaths(\n\t\t\t\tthis.lastSkillPaths,\n\t\t\t\tskillPaths.map((entry) => entry.path),\n\t\t\t);\n\t\t\tthis.updateSkillsFromPaths(this.lastSkillPaths);\n\t\t}\n\n\t\tif (promptPaths.length > 0) {\n\t\t\tthis.lastPromptPaths = this.mergePaths(\n\t\t\t\tthis.lastPromptPaths,\n\t\t\t\tpromptPaths.map((entry) => entry.path),\n\t\t\t);\n\t\t\tthis.updatePromptsFromPaths(this.lastPromptPaths);\n\t\t}\n\n\t\tif (themePaths.length > 0) {\n\t\t\tthis.lastThemePaths = this.mergePaths(\n\t\t\t\tthis.lastThemePaths,\n\t\t\t\tthemePaths.map((entry) => entry.path),\n\t\t\t);\n\t\t\tthis.updateThemesFromPaths(this.lastThemePaths);\n\t\t}\n\t}\n\n\tasync reload(): Promise<void> {\n\t\tawait this.settingsManager.reload();\n\t\tconst resolvedPaths = await this.packageManager.resolve();\n\t\tconst cliExtensionPaths = await this.packageManager.resolveExtensionSources(this.additionalExtensionPaths, {\n\t\t\ttemporary: true,\n\t\t});\n\t\tconst metadataByPath = new Map<string, PathMetadata>();\n\n\t\tthis.extensionSkillSourceInfos = new Map();\n\t\tthis.extensionPromptSourceInfos = new Map();\n\t\tthis.extensionThemeSourceInfos = new Map();\n\n\t\t// Helper to extract enabled paths and store metadata\n\t\tconst getEnabledResources = (\n\t\t\tresources: Array<{ path: string; enabled: boolean; metadata: PathMetadata }>,\n\t\t): Array<{ path: string; enabled: boolean; metadata: PathMetadata }> => {\n\t\t\tfor (const r of resources) {\n\t\t\t\tif (!metadataByPath.has(r.path)) {\n\t\t\t\t\tmetadataByPath.set(r.path, r.metadata);\n\t\t\t\t}\n\t\t\t}\n\t\t\treturn resources.filter((r) => r.enabled);\n\t\t};\n\n\t\tconst getEnabledPaths = (\n\t\t\tresources: Array<{ path: string; enabled: boolean; metadata: PathMetadata }>,\n\t\t): string[] => getEnabledResources(resources).map((r) => r.path);\n\t\tconst enabledExtensions = getEnabledPaths(resolvedPaths.extensions);\n\t\tconst enabledSkillResources = getEnabledResources(resolvedPaths.skills);\n\t\tconst enabledPrompts = getEnabledPaths(resolvedPaths.prompts);\n\t\tconst enabledThemes = getEnabledPaths(resolvedPaths.themes);\n\n\t\tconst mapSkillPath = (resource: { path: string; metadata: PathMetadata }): string => {\n\t\t\tif (resource.metadata.source !== \"auto\" && resource.metadata.origin !== \"package\") {\n\t\t\t\treturn resource.path;\n\t\t\t}\n\t\t\ttry {\n\t\t\t\tconst stats = statSync(resource.path);\n\t\t\t\tif (!stats.isDirectory()) {\n\t\t\t\t\treturn resource.path;\n\t\t\t\t}\n\t\t\t} catch {\n\t\t\t\treturn resource.path;\n\t\t\t}\n\t\t\tconst skillFile = join(resource.path, \"SKILL.md\");\n\t\t\tif (existsSync(skillFile)) {\n\t\t\t\tif (!metadataByPath.has(skillFile)) {\n\t\t\t\t\tmetadataByPath.set(skillFile, resource.metadata);\n\t\t\t\t}\n\t\t\t\treturn skillFile;\n\t\t\t}\n\t\t\treturn resource.path;\n\t\t};\n\n\t\tconst enabledSkills = enabledSkillResources.map(mapSkillPath);\n\n\t\t// Add CLI paths metadata\n\t\tfor (const r of cliExtensionPaths.extensions) {\n\t\t\tif (!metadataByPath.has(r.path)) {\n\t\t\t\tmetadataByPath.set(r.path, { source: \"cli\", scope: \"temporary\", origin: \"top-level\" });\n\t\t\t}\n\t\t}\n\t\tfor (const r of cliExtensionPaths.skills) {\n\t\t\tif (!metadataByPath.has(r.path)) {\n\t\t\t\tmetadataByPath.set(r.path, { source: \"cli\", scope: \"temporary\", origin: \"top-level\" });\n\t\t\t}\n\t\t}\n\n\t\tconst cliEnabledExtensions = getEnabledPaths(cliExtensionPaths.extensions);\n\t\tconst cliEnabledSkills = getEnabledPaths(cliExtensionPaths.skills);\n\t\tconst cliEnabledPrompts = getEnabledPaths(cliExtensionPaths.prompts);\n\t\tconst cliEnabledThemes = getEnabledPaths(cliExtensionPaths.themes);\n\n\t\tconst extensionPaths = this.noExtensions\n\t\t\t? cliEnabledExtensions\n\t\t\t: this.mergePaths(cliEnabledExtensions, enabledExtensions);\n\n\t\tconst extensionsResult = await loadExtensions(extensionPaths, this.cwd, this.eventBus);\n\t\tconst inlineExtensions = await this.loadExtensionFactories(extensionsResult.runtime);\n\t\textensionsResult.extensions.push(...inlineExtensions.extensions);\n\t\textensionsResult.errors.push(...inlineExtensions.errors);\n\n\t\t// Detect extension conflicts (tools, commands, flags with same names from different extensions)\n\t\t// Keep all extensions loaded. Conflicts are reported as diagnostics, and precedence is handled by load order.\n\t\tconst conflicts = this.detectExtensionConflicts(extensionsResult.extensions);\n\t\tfor (const conflict of conflicts) {\n\t\t\textensionsResult.errors.push({ path: conflict.path, error: conflict.message });\n\t\t}\n\n\t\tfor (const p of this.additionalExtensionPaths) {\n\t\t\tif (isLocalPath(p)) {\n\t\t\t\tconst resolved = this.resolveResourcePath(p);\n\t\t\t\tif (!existsSync(resolved)) {\n\t\t\t\t\textensionsResult.errors.push({ path: resolved, error: `Extension path does not exist: ${resolved}` });\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\t\tthis.extensionsResult = this.extensionsOverride ? this.extensionsOverride(extensionsResult) : extensionsResult;\n\t\tthis.applyExtensionSourceInfo(this.extensionsResult.extensions, metadataByPath);\n\n\t\tconst skillPaths = this.noSkills\n\t\t\t? this.mergePaths(cliEnabledSkills, this.additionalSkillPaths)\n\t\t\t: this.mergePaths([...cliEnabledSkills, ...enabledSkills], this.additionalSkillPaths);\n\n\t\tthis.lastSkillPaths = skillPaths;\n\t\tthis.updateSkillsFromPaths(skillPaths, metadataByPath);\n\t\tfor (const p of this.additionalSkillPaths) {\n\t\t\tif (isLocalPath(p)) {\n\t\t\t\tconst resolved = this.resolveResourcePath(p);\n\t\t\t\tif (!existsSync(resolved) && !this.skillDiagnostics.some((d) => d.path === resolved)) {\n\t\t\t\t\tthis.skillDiagnostics.push({ type: \"error\", message: \"Skill path does not exist\", path: resolved });\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\n\t\tconst promptPaths = this.noPromptTemplates\n\t\t\t? this.mergePaths(cliEnabledPrompts, this.additionalPromptTemplatePaths)\n\t\t\t: this.mergePaths([...cliEnabledPrompts, ...enabledPrompts], this.additionalPromptTemplatePaths);\n\n\t\tthis.lastPromptPaths = promptPaths;\n\t\tthis.updatePromptsFromPaths(promptPaths, metadataByPath);\n\t\tfor (const p of this.additionalPromptTemplatePaths) {\n\t\t\tif (isLocalPath(p)) {\n\t\t\t\tconst resolved = this.resolveResourcePath(p);\n\t\t\t\tif (!existsSync(resolved) && !this.promptDiagnostics.some((d) => d.path === resolved)) {\n\t\t\t\t\tthis.promptDiagnostics.push({\n\t\t\t\t\t\ttype: \"error\",\n\t\t\t\t\t\tmessage: \"Prompt template path does not exist\",\n\t\t\t\t\t\tpath: resolved,\n\t\t\t\t\t});\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\n\t\tconst themePaths = this.noThemes\n\t\t\t? this.mergePaths(cliEnabledThemes, this.additionalThemePaths)\n\t\t\t: this.mergePaths([...cliEnabledThemes, ...enabledThemes], this.additionalThemePaths);\n\n\t\tthis.lastThemePaths = themePaths;\n\t\tthis.updateThemesFromPaths(themePaths, metadataByPath);\n\t\tfor (const p of this.additionalThemePaths) {\n\t\t\tconst resolved = this.resolveResourcePath(p);\n\t\t\tif (!existsSync(resolved) && !this.themeDiagnostics.some((d) => d.path === resolved)) {\n\t\t\t\tthis.themeDiagnostics.push({ type: \"error\", message: \"Theme path does not exist\", path: resolved });\n\t\t\t}\n\t\t}\n\n\t\tconst agentsFiles = {\n\t\t\tagentsFiles: this.noContextFiles ? [] : loadProjectContextFiles({ cwd: this.cwd, agentDir: this.agentDir }),\n\t\t};\n\t\tconst resolvedAgentsFiles = this.agentsFilesOverride ? this.agentsFilesOverride(agentsFiles) : agentsFiles;\n\t\tthis.agentsFiles = resolvedAgentsFiles.agentsFiles;\n\n\t\tconst baseSystemPrompt = resolvePromptInput(\n\t\t\tthis.systemPromptSource ?? this.discoverSystemPromptFile(),\n\t\t\t\"system prompt\",\n\t\t);\n\t\tthis.systemPrompt = this.systemPromptOverride ? this.systemPromptOverride(baseSystemPrompt) : baseSystemPrompt;\n\n\t\tconst appendSources =\n\t\t\tthis.appendSystemPromptSource ??\n\t\t\t(this.discoverAppendSystemPromptFile() ? [this.discoverAppendSystemPromptFile()!] : []);\n\t\tconst baseAppend = appendSources\n\t\t\t.map((s) => resolvePromptInput(s, \"append system prompt\"))\n\t\t\t.filter((s): s is string => s !== undefined);\n\t\tthis.appendSystemPrompt = this.appendSystemPromptOverride\n\t\t\t? this.appendSystemPromptOverride(baseAppend)\n\t\t\t: baseAppend;\n\t}\n\n\tprivate normalizeExtensionPaths(\n\t\tentries: Array<{ path: string; metadata: PathMetadata }>,\n\t): Array<{ path: string; metadata: PathMetadata }> {\n\t\treturn entries.map((entry) => {\n\t\t\tconst metadata = entry.metadata.baseDir\n\t\t\t\t? { ...entry.metadata, baseDir: this.resolveResourcePath(entry.metadata.baseDir) }\n\t\t\t\t: entry.metadata;\n\t\t\treturn {\n\t\t\t\tpath: this.resolveResourcePath(entry.path),\n\t\t\t\tmetadata,\n\t\t\t};\n\t\t});\n\t}\n\n\tprivate updateSkillsFromPaths(skillPaths: string[], metadataByPath?: Map<string, PathMetadata>): void {\n\t\tlet skillsResult: { skills: Skill[]; diagnostics: ResourceDiagnostic[] };\n\t\tif (this.noSkills && skillPaths.length === 0) {\n\t\t\tskillsResult = { skills: [], diagnostics: [] };\n\t\t} else {\n\t\t\tskillsResult = loadSkills({\n\t\t\t\tcwd: this.cwd,\n\t\t\t\tagentDir: this.agentDir,\n\t\t\t\tskillPaths,\n\t\t\t\tincludeDefaults: false,\n\t\t\t});\n\t\t}\n\t\tconst resolvedSkills = this.skillsOverride ? this.skillsOverride(skillsResult) : skillsResult;\n\t\tthis.skills = resolvedSkills.skills.map((skill) => ({\n\t\t\t...skill,\n\t\t\tsourceInfo:\n\t\t\t\tthis.findSourceInfoForPath(skill.filePath, this.extensionSkillSourceInfos, metadataByPath) ??\n\t\t\t\tskill.sourceInfo ??\n\t\t\t\tthis.getDefaultSourceInfoForPath(skill.filePath),\n\t\t}));\n\t\tthis.skillDiagnostics = resolvedSkills.diagnostics;\n\t}\n\n\tprivate updatePromptsFromPaths(promptPaths: string[], metadataByPath?: Map<string, PathMetadata>): void {\n\t\tlet promptsResult: { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] };\n\t\tif (this.noPromptTemplates && promptPaths.length === 0) {\n\t\t\tpromptsResult = { prompts: [], diagnostics: [] };\n\t\t} else {\n\t\t\tconst allPrompts = loadPromptTemplates({\n\t\t\t\tcwd: this.cwd,\n\t\t\t\tagentDir: this.agentDir,\n\t\t\t\tpromptPaths,\n\t\t\t\tincludeDefaults: false,\n\t\t\t});\n\t\t\tpromptsResult = this.dedupePrompts(allPrompts);\n\t\t}\n\t\tconst resolvedPrompts = this.promptsOverride ? this.promptsOverride(promptsResult) : promptsResult;\n\t\tthis.prompts = resolvedPrompts.prompts.map((prompt) => ({\n\t\t\t...prompt,\n\t\t\tsourceInfo:\n\t\t\t\tthis.findSourceInfoForPath(prompt.filePath, this.extensionPromptSourceInfos, metadataByPath) ??\n\t\t\t\tprompt.sourceInfo ??\n\t\t\t\tthis.getDefaultSourceInfoForPath(prompt.filePath),\n\t\t}));\n\t\tthis.promptDiagnostics = resolvedPrompts.diagnostics;\n\t}\n\n\tprivate updateThemesFromPaths(themePaths: string[], metadataByPath?: Map<string, PathMetadata>): void {\n\t\tlet themesResult: { themes: Theme[]; diagnostics: ResourceDiagnostic[] };\n\t\tif (this.noThemes && themePaths.length === 0) {\n\t\t\tthemesResult = { themes: [], diagnostics: [] };\n\t\t} else {\n\t\t\tconst loaded = this.loadThemes(themePaths, false);\n\t\t\tconst deduped = this.dedupeThemes(loaded.themes);\n\t\t\tthemesResult = { themes: deduped.themes, diagnostics: [...loaded.diagnostics, ...deduped.diagnostics] };\n\t\t}\n\t\tconst resolvedThemes = this.themesOverride ? this.themesOverride(themesResult) : themesResult;\n\t\tthis.themes = resolvedThemes.themes.map((theme) => {\n\t\t\tconst sourcePath = theme.sourcePath;\n\t\t\ttheme.sourceInfo = sourcePath\n\t\t\t\t? (this.findSourceInfoForPath(sourcePath, this.extensionThemeSourceInfos, metadataByPath) ??\n\t\t\t\t\ttheme.sourceInfo ??\n\t\t\t\t\tthis.getDefaultSourceInfoForPath(sourcePath))\n\t\t\t\t: theme.sourceInfo;\n\t\t\treturn theme;\n\t\t});\n\t\tthis.themeDiagnostics = resolvedThemes.diagnostics;\n\t}\n\n\tprivate applyExtensionSourceInfo(extensions: Extension[], metadataByPath: Map<string, PathMetadata>): void {\n\t\tfor (const extension of extensions) {\n\t\t\textension.sourceInfo =\n\t\t\t\tthis.findSourceInfoForPath(extension.path, undefined, metadataByPath) ??\n\t\t\t\tthis.getDefaultSourceInfoForPath(extension.path);\n\t\t\tfor (const command of extension.commands.values()) {\n\t\t\t\tcommand.sourceInfo = extension.sourceInfo;\n\t\t\t}\n\t\t\tfor (const tool of extension.tools.values()) {\n\t\t\t\ttool.sourceInfo = extension.sourceInfo;\n\t\t\t}\n\t\t}\n\t}\n\n\tprivate findSourceInfoForPath(\n\t\tresourcePath: string,\n\t\textraSourceInfos?: Map<string, SourceInfo>,\n\t\tmetadataByPath?: Map<string, PathMetadata>,\n\t): SourceInfo | undefined {\n\t\tif (!resourcePath) {\n\t\t\treturn undefined;\n\t\t}\n\n\t\tif (resourcePath.startsWith(\"<\")) {\n\t\t\treturn this.getDefaultSourceInfoForPath(resourcePath);\n\t\t}\n\n\t\tconst normalizedResourcePath = resolve(resourcePath);\n\t\tif (extraSourceInfos) {\n\t\t\tfor (const [sourcePath, sourceInfo] of extraSourceInfos.entries()) {\n\t\t\t\tconst normalizedSourcePath = resolve(sourcePath);\n\t\t\t\tif (\n\t\t\t\t\tnormalizedResourcePath === normalizedSourcePath ||\n\t\t\t\t\tnormalizedResourcePath.startsWith(`${normalizedSourcePath}${sep}`)\n\t\t\t\t) {\n\t\t\t\t\treturn { ...sourceInfo, path: resourcePath };\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\n\t\tif (metadataByPath) {\n\t\t\tconst exact = metadataByPath.get(normalizedResourcePath) ?? metadataByPath.get(resourcePath);\n\t\t\tif (exact) {\n\t\t\t\treturn createSourceInfo(resourcePath, exact);\n\t\t\t}\n\n\t\t\tfor (const [sourcePath, metadata] of metadataByPath.entries()) {\n\t\t\t\tconst normalizedSourcePath = resolve(sourcePath);\n\t\t\t\tif (\n\t\t\t\t\tnormalizedResourcePath === normalizedSourcePath ||\n\t\t\t\t\tnormalizedResourcePath.startsWith(`${normalizedSourcePath}${sep}`)\n\t\t\t\t) {\n\t\t\t\t\treturn createSourceInfo(resourcePath, metadata);\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\n\t\treturn undefined;\n\t}\n\n\tprivate getDefaultSourceInfoForPath(filePath: string): SourceInfo {\n\t\tif (filePath.startsWith(\"<\") && filePath.endsWith(\">\")) {\n\t\t\treturn {\n\t\t\t\tpath: filePath,\n\t\t\t\tsource: filePath.slice(1, -1).split(\":\")[0] || \"temporary\",\n\t\t\t\tscope: \"temporary\",\n\t\t\t\torigin: \"top-level\",\n\t\t\t};\n\t\t}\n\n\t\tconst normalizedPath = resolve(filePath);\n\t\tconst agentRoots = [\n\t\t\tjoin(this.agentDir, \"skills\"),\n\t\t\tjoin(this.agentDir, \"prompts\"),\n\t\t\tjoin(this.agentDir, \"themes\"),\n\t\t\tjoin(this.agentDir, \"extensions\"),\n\t\t];\n\t\tconst projectRoots = [\n\t\t\tjoin(this.cwd, CONFIG_DIR_NAME, \"skills\"),\n\t\t\tjoin(this.cwd, CONFIG_DIR_NAME, \"prompts\"),\n\t\t\tjoin(this.cwd, CONFIG_DIR_NAME, \"themes\"),\n\t\t\tjoin(this.cwd, CONFIG_DIR_NAME, \"extensions\"),\n\t\t];\n\n\t\tfor (const root of agentRoots) {\n\t\t\tif (this.isUnderPath(normalizedPath, root)) {\n\t\t\t\treturn { path: filePath, source: \"local\", scope: \"user\", origin: \"top-level\", baseDir: root };\n\t\t\t}\n\t\t}\n\n\t\tfor (const root of projectRoots) {\n\t\t\tif (this.isUnderPath(normalizedPath, root)) {\n\t\t\t\treturn { path: filePath, source: \"local\", scope: \"project\", origin: \"top-level\", baseDir: root };\n\t\t\t}\n\t\t}\n\n\t\treturn {\n\t\t\tpath: filePath,\n\t\t\tsource: \"local\",\n\t\t\tscope: \"temporary\",\n\t\t\torigin: \"top-level\",\n\t\t\tbaseDir: statSync(normalizedPath).isDirectory() ? normalizedPath : resolve(normalizedPath, \"..\"),\n\t\t};\n\t}\n\n\tprivate mergePaths(primary: string[], additional: string[]): string[] {\n\t\tconst merged: string[] = [];\n\t\tconst seen = new Set<string>();\n\n\t\tfor (const p of [...primary, ...additional]) {\n\t\t\tconst resolved = this.resolveResourcePath(p);\n\t\t\tconst canonicalPath = canonicalizePath(resolved);\n\t\t\tif (seen.has(canonicalPath)) continue;\n\t\t\tseen.add(canonicalPath);\n\t\t\tmerged.push(resolved);\n\t\t}\n\n\t\treturn merged;\n\t}\n\n\tprivate resolveResourcePath(p: string): string {\n\t\treturn resolvePath(p, this.cwd, { trim: true });\n\t}\n\n\tprivate loadThemes(\n\t\tpaths: string[],\n\t\tincludeDefaults: boolean = true,\n\t): {\n\t\tthemes: Theme[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t} {\n\t\tconst themes: Theme[] = [];\n\t\tconst diagnostics: ResourceDiagnostic[] = [];\n\t\tif (includeDefaults) {\n\t\t\tconst defaultDirs = [join(this.agentDir, \"themes\"), join(this.cwd, CONFIG_DIR_NAME, \"themes\")];\n\n\t\t\tfor (const dir of defaultDirs) {\n\t\t\t\tthis.loadThemesFromDir(dir, themes, diagnostics);\n\t\t\t}\n\t\t}\n\n\t\tfor (const p of paths) {\n\t\t\tconst resolved = this.resolveResourcePath(p);\n\t\t\tif (!existsSync(resolved)) {\n\t\t\t\tdiagnostics.push({ type: \"warning\", message: \"theme path does not exist\", path: resolved });\n\t\t\t\tcontinue;\n\t\t\t}\n\n\t\t\ttry {\n\t\t\t\tconst stats = statSync(resolved);\n\t\t\t\tif (stats.isDirectory()) {\n\t\t\t\t\tthis.loadThemesFromDir(resolved, themes, diagnostics);\n\t\t\t\t} else if (stats.isFile() && resolved.endsWith(\".json\")) {\n\t\t\t\t\tthis.loadThemeFromFile(resolved, themes, diagnostics);\n\t\t\t\t} else {\n\t\t\t\t\tdiagnostics.push({ type: \"warning\", message: \"theme path is not a json file\", path: resolved });\n\t\t\t\t}\n\t\t\t} catch (error) {\n\t\t\t\tconst message = error instanceof Error ? error.message : \"failed to read theme path\";\n\t\t\t\tdiagnostics.push({ type: \"warning\", message, path: resolved });\n\t\t\t}\n\t\t}\n\n\t\treturn { themes, diagnostics };\n\t}\n\n\tprivate loadThemesFromDir(dir: string, themes: Theme[], diagnostics: ResourceDiagnostic[]): void {\n\t\tif (!existsSync(dir)) {\n\t\t\treturn;\n\t\t}\n\n\t\ttry {\n\t\t\tconst entries = readdirSync(dir, { withFileTypes: true });\n\t\t\tfor (const entry of entries) {\n\t\t\t\tlet isFile = entry.isFile();\n\t\t\t\tif (entry.isSymbolicLink()) {\n\t\t\t\t\ttry {\n\t\t\t\t\t\tisFile = statSync(join(dir, entry.name)).isFile();\n\t\t\t\t\t} catch {\n\t\t\t\t\t\tcontinue;\n\t\t\t\t\t}\n\t\t\t\t}\n\t\t\t\tif (!isFile) {\n\t\t\t\t\tcontinue;\n\t\t\t\t}\n\t\t\t\tif (!entry.name.endsWith(\".json\")) {\n\t\t\t\t\tcontinue;\n\t\t\t\t}\n\t\t\t\tthis.loadThemeFromFile(join(dir, entry.name), themes, diagnostics);\n\t\t\t}\n\t\t} catch (error) {\n\t\t\tconst message = error instanceof Error ? error.message : \"failed to read theme directory\";\n\t\t\tdiagnostics.push({ type: \"warning\", message, path: dir });\n\t\t}\n\t}\n\n\tprivate loadThemeFromFile(filePath: string, themes: Theme[], diagnostics: ResourceDiagnostic[]): void {\n\t\ttry {\n\t\t\tthemes.push(loadThemeFromPath(filePath));\n\t\t} catch (error) {\n\t\t\tconst message = error instanceof Error ? error.message : \"failed to load theme\";\n\t\t\tdiagnostics.push({ type: \"warning\", message, path: filePath });\n\t\t}\n\t}\n\n\tprivate async loadExtensionFactories(runtime: ExtensionRuntime): Promise<{\n\t\textensions: Extension[];\n\t\terrors: Array<{ path: string; error: string }>;\n\t}> {\n\t\tconst extensions: Extension[] = [];\n\t\tconst errors: Array<{ path: string; error: string }> = [];\n\n\t\tfor (const [index, factory] of this.extensionFactories.entries()) {\n\t\t\tconst extensionPath = `<inline:${index + 1}>`;\n\t\t\ttry {\n\t\t\t\tconst extension = await loadExtensionFromFactory(factory, this.cwd, this.eventBus, runtime, extensionPath);\n\t\t\t\textensions.push(extension);\n\t\t\t} catch (error) {\n\t\t\t\tconst message = error instanceof Error ? error.message : \"failed to load extension\";\n\t\t\t\terrors.push({ path: extensionPath, error: message });\n\t\t\t}\n\t\t}\n\n\t\treturn { extensions, errors };\n\t}\n\n\tprivate dedupePrompts(prompts: PromptTemplate[]): { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] } {\n\t\tconst seen = new Map<string, PromptTemplate>();\n\t\tconst diagnostics: ResourceDiagnostic[] = [];\n\n\t\tfor (const prompt of prompts) {\n\t\t\tconst existing = seen.get(prompt.name);\n\t\t\tif (existing) {\n\t\t\t\tdiagnostics.push({\n\t\t\t\t\ttype: \"collision\",\n\t\t\t\t\tmessage: `name \"/${prompt.name}\" collision`,\n\t\t\t\t\tpath: prompt.filePath,\n\t\t\t\t\tcollision: {\n\t\t\t\t\t\tresourceType: \"prompt\",\n\t\t\t\t\t\tname: prompt.name,\n\t\t\t\t\t\twinnerPath: existing.filePath,\n\t\t\t\t\t\tloserPath: prompt.filePath,\n\t\t\t\t\t},\n\t\t\t\t});\n\t\t\t} else {\n\t\t\t\tseen.set(prompt.name, prompt);\n\t\t\t}\n\t\t}\n\n\t\treturn { prompts: Array.from(seen.values()), diagnostics };\n\t}\n\n\tprivate dedupeThemes(themes: Theme[]): { themes: Theme[]; diagnostics: ResourceDiagnostic[] } {\n\t\tconst seen = new Map<string, Theme>();\n\t\tconst diagnostics: ResourceDiagnostic[] = [];\n\n\t\tfor (const t of themes) {\n\t\t\tconst name = t.name ?? \"unnamed\";\n\t\t\tconst existing = seen.get(name);\n\t\t\tif (existing) {\n\t\t\t\tdiagnostics.push({\n\t\t\t\t\ttype: \"collision\",\n\t\t\t\t\tmessage: `name \"${name}\" collision`,\n\t\t\t\t\tpath: t.sourcePath,\n\t\t\t\t\tcollision: {\n\t\t\t\t\t\tresourceType: \"theme\",\n\t\t\t\t\t\tname,\n\t\t\t\t\t\twinnerPath: existing.sourcePath ?? \"<builtin>\",\n\t\t\t\t\t\tloserPath: t.sourcePath ?? \"<builtin>\",\n\t\t\t\t\t},\n\t\t\t\t});\n\t\t\t} else {\n\t\t\t\tseen.set(name, t);\n\t\t\t}\n\t\t}\n\n\t\treturn { themes: Array.from(seen.values()), diagnostics };\n\t}\n\n\tprivate discoverSystemPromptFile(): string | undefined {\n\t\tconst projectPath = join(this.cwd, CONFIG_DIR_NAME, \"SYSTEM.md\");\n\t\tif (existsSync(projectPath)) {\n\t\t\treturn projectPath;\n\t\t}\n\n\t\tconst globalPath = join(this.agentDir, \"SYSTEM.md\");\n\t\tif (existsSync(globalPath)) {\n\t\t\treturn globalPath;\n\t\t}\n\n\t\treturn undefined;\n\t}\n\n\tprivate discoverAppendSystemPromptFile(): string | undefined {\n\t\tconst projectPath = join(this.cwd, CONFIG_DIR_NAME, \"APPEND_SYSTEM.md\");\n\t\tif (existsSync(projectPath)) {\n\t\t\treturn projectPath;\n\t\t}\n\n\t\tconst globalPath = join(this.agentDir, \"APPEND_SYSTEM.md\");\n\t\tif (existsSync(globalPath)) {\n\t\t\treturn globalPath;\n\t\t}\n\n\t\treturn undefined;\n\t}\n\n\tprivate isUnderPath(target: string, root: string): boolean {\n\t\tconst normalizedRoot = resolve(root);\n\t\tif (target === normalizedRoot) {\n\t\t\treturn true;\n\t\t}\n\t\tconst prefix = normalizedRoot.endsWith(sep) ? normalizedRoot : `${normalizedRoot}${sep}`;\n\t\treturn target.startsWith(prefix);\n\t}\n\n\tprivate detectExtensionConflicts(extensions: Extension[]): Array<{ path: string; message: string }> {\n\t\tconst conflicts: Array<{ path: string; message: string }> = [];\n\n\t\t// Track which extension registered each tool and flag\n\t\tconst toolOwners = new Map<string, string>();\n\t\tconst flagOwners = new Map<string, string>();\n\n\t\tfor (const ext of extensions) {\n\t\t\t// Check tools\n\t\t\tfor (const toolName of ext.tools.keys()) {\n\t\t\t\tconst existingOwner = toolOwners.get(toolName);\n\t\t\t\tif (existingOwner && existingOwner !== ext.path) {\n\t\t\t\t\tconflicts.push({\n\t\t\t\t\t\tpath: ext.path,\n\t\t\t\t\t\tmessage: `Tool \"${toolName}\" conflicts with ${existingOwner}`,\n\t\t\t\t\t});\n\t\t\t\t} else {\n\t\t\t\t\ttoolOwners.set(toolName, ext.path);\n\t\t\t\t}\n\t\t\t}\n\n\t\t\t// Check flags\n\t\t\tfor (const flagName of ext.flags.keys()) {\n\t\t\t\tconst existingOwner = flagOwners.get(flagName);\n\t\t\t\tif (existingOwner && existingOwner !== ext.path) {\n\t\t\t\t\tconflicts.push({\n\t\t\t\t\t\tpath: ext.path,\n\t\t\t\t\t\tmessage: `Flag \"--${flagName}\" conflicts with ${existingOwner}`,\n\t\t\t\t\t});\n\t\t\t\t} else {\n\t\t\t\t\tflagOwners.set(flagName, ext.path);\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\n\t\treturn conflicts;\n\t}\n}\n"]}
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\"./prompt-templates.ts\";\nimport { SettingsManager } from \"./settings-manager.ts\";\nimport type { Skill } from \"./skills.ts\";\nimport { loadSkills } from \"./skills.ts\";\nimport { createSourceInfo, type SourceInfo } from \"./source-info.ts\";\n\nexport interface ResourceExtensionPaths {\n\tskillPaths?: Array<{ path: string; metadata: PathMetadata }>;\n\tpromptPaths?: Array<{ path: string; metadata: PathMetadata }>;\n\tthemePaths?: Array<{ path: string; metadata: PathMetadata }>;\n}\n\nexport interface ResourceLoader {\n\tgetExtensions(): LoadExtensionsResult;\n\tgetSkills(): { skills: Skill[]; diagnostics: ResourceDiagnostic[] };\n\tgetPrompts(): { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] };\n\tgetThemes(): { themes: Theme[]; diagnostics: ResourceDiagnostic[] };\n\tgetAgentsFiles(): { agentsFiles: Array<{ path: string; content?: string }> };\n\tgetSystemPrompt(): string | undefined;\n\tgetAppendSystemPrompt(): string[];\n\textendResources(paths: ResourceExtensionPaths): void;\n\treload(): Promise<void>;\n}\n\nfunction resolvePromptInput(input: string | undefined, description: string): string | undefined {\n\tif (!input) {\n\t\treturn undefined;\n\t}\n\n\tif (existsSync(input)) {\n\t\ttry {\n\t\t\treturn readFileSync(input, \"utf-8\");\n\t\t} catch (error) {\n\t\t\tconsole.error(chalk.yellow(`Warning: Could not read ${description} file ${input}: ${error}`));\n\t\t\treturn input;\n\t\t}\n\t}\n\n\treturn input;\n}\n\nconst CONTEXT_THREAT_PATTERNS: Array<{ label: string; pattern: RegExp }> = [\n\t{\n\t\tlabel: \"instruction override\",\n\t\tpattern:\n\t\t\t/\\b(?:ignore|disregard|override|bypass)\\b.{0,80}\\b(?:previous|prior|above|system|developer|agent)\\b.{0,80}\\binstructions?\\b/i,\n\t},\n\t{\n\t\tlabel: \"secret exfiltration\",\n\t\tpattern:\n\t\t\t/\\b(?:reveal|print|dump|exfiltrate|send|upload)\\b.{0,80}\\b(?:secrets?|tokens?|api[_ -]?keys?|credentials?|environment variables?|\\.env)\\b/i,\n\t},\n\t{\n\t\tlabel: \"hidden instruction\",\n\t\tpattern: /\\b(?:do not tell|don't tell|hide this from)\\b.{0,80}\\b(?:user|operator|developer)\\b/i,\n\t},\n];\n\nexport function scanContextFileThreats(content: string): string[] {\n\treturn CONTEXT_THREAT_PATTERNS.filter(({ pattern }) => pattern.test(content)).map(({ label }) => label);\n}\n\nfunction sanitizeContextFileContent(filePath: string, content: string): string {\n\tconst findings = scanContextFileThreats(content);\n\tif (findings.length === 0) return content;\n\tconsole.error(chalk.yellow(`Warning: Blocked context file ${filePath}: ${findings.join(\", \")}`));\n\treturn `[BLOCKED: ${filePath} contained potential prompt injection (${findings.join(\", \")}). Content not loaded.]`;\n}\n\nfunction loadContextFilesFromDir(dir: string): Array<{ path: string; content: string }> {\n\tconst candidates = [\"AGENTS.md\", \"AGENTS.MD\", \"CLAUDE.md\", \"CLAUDE.MD\", \"GEMINI.md\", \"GEMINI.MD\"];\n\tconst files: Array<{ path: string; content: string }> = [];\n\tfor (const filename of candidates) {\n\t\tconst filePath = join(dir, filename);\n\t\tif (existsSync(filePath)) {\n\t\t\ttry {\n\t\t\t\tconst content = readFileSync(filePath, \"utf-8\");\n\t\t\t\tfiles.push({\n\t\t\t\t\tpath: filePath,\n\t\t\t\t\tcontent: sanitizeContextFileContent(filePath, content),\n\t\t\t\t});\n\t\t\t} catch (error) {\n\t\t\t\tconsole.error(chalk.yellow(`Warning: Could not read ${filePath}: ${error}`));\n\t\t\t}\n\t\t}\n\t}\n\treturn files;\n}\n\nexport function loadProjectContextFiles(options: {\n\tcwd: string;\n\tagentDir: string;\n\tprojectTrusted?: boolean;\n}): Array<{ path: string; content?: string }> {\n\tconst resolvedCwd = resolvePath(options.cwd);\n\tconst resolvedAgentDir = resolvePath(options.agentDir);\n\n\tconst contextFiles: Array<{ path: string; content?: string }> = [];\n\tconst seenPaths = new Set<string>();\n\n\tfor (const globalContext of loadContextFilesFromDir(resolvedAgentDir)) {\n\t\tcontextFiles.push(globalContext);\n\t\tseenPaths.add(globalContext.path);\n\t}\n\n\tif (options.projectTrusted !== false) {\n\t\tconst ancestorContextFiles: Array<{ path: string; content?: string }> = [];\n\n\t\tlet currentDir = resolvedCwd;\n\t\tconst root = resolve(\"/\");\n\n\t\twhile (true) {\n\t\t\tconst contextFilesInDir = loadContextFilesFromDir(currentDir).filter(\n\t\t\t\t(contextFile) => !seenPaths.has(contextFile.path),\n\t\t\t);\n\t\t\tif (contextFilesInDir.length > 0) {\n\t\t\t\tancestorContextFiles.unshift(...contextFilesInDir);\n\t\t\t\tfor (const contextFile of contextFilesInDir) {\n\t\t\t\t\tseenPaths.add(contextFile.path);\n\t\t\t\t}\n\t\t\t}\n\n\t\t\tif (currentDir === root) break;\n\n\t\t\tconst parentDir = resolve(currentDir, \"..\");\n\t\t\tif (parentDir === currentDir) break;\n\t\t\tcurrentDir = parentDir;\n\t\t}\n\n\t\tcontextFiles.push(...ancestorContextFiles);\n\t}\n\n\treturn contextFiles;\n}\n\nexport interface DefaultResourceLoaderOptions {\n\tcwd: string;\n\tagentDir: string;\n\tsettingsManager?: SettingsManager;\n\teventBus?: EventBus;\n\tadditionalExtensionPaths?: string[];\n\tadditionalSkillPaths?: string[];\n\tadditionalPromptTemplatePaths?: string[];\n\tadditionalThemePaths?: string[];\n\textensionFactories?: ExtensionFactory[];\n\tnoExtensions?: boolean;\n\tnoSkills?: boolean;\n\tnoPromptTemplates?: boolean;\n\tnoThemes?: boolean;\n\tnoContextFiles?: boolean;\n\tsystemPrompt?: string;\n\tappendSystemPrompt?: string[];\n\textensionsOverride?: (base: LoadExtensionsResult) => LoadExtensionsResult;\n\tskillsOverride?: (base: { skills: Skill[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tskills: Skill[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tpromptsOverride?: (base: { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tprompts: PromptTemplate[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tthemesOverride?: (base: { themes: Theme[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tthemes: Theme[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tagentsFilesOverride?: (base: { agentsFiles: Array<{ path: string; content?: string }> }) => {\n\t\tagentsFiles: Array<{ path: string; content?: string }>;\n\t};\n\tsystemPromptOverride?: (base: string | undefined) => string | undefined;\n\tappendSystemPromptOverride?: (base: string[]) => string[];\n}\n\nexport class DefaultResourceLoader implements ResourceLoader {\n\tprivate cwd: string;\n\tprivate agentDir: string;\n\tprivate settingsManager: SettingsManager;\n\tprivate eventBus: EventBus;\n\tprivate packageManager: DefaultPackageManager;\n\tprivate additionalExtensionPaths: string[];\n\tprivate additionalSkillPaths: string[];\n\tprivate additionalPromptTemplatePaths: string[];\n\tprivate additionalThemePaths: string[];\n\tprivate extensionFactories: ExtensionFactory[];\n\tprivate noExtensions: boolean;\n\tprivate noSkills: boolean;\n\tprivate noPromptTemplates: boolean;\n\tprivate noThemes: boolean;\n\tprivate noContextFiles: boolean;\n\tprivate systemPromptSource?: string;\n\tprivate appendSystemPromptSource?: string[];\n\tprivate extensionsOverride?: (base: LoadExtensionsResult) => LoadExtensionsResult;\n\tprivate skillsOverride?: (base: { skills: Skill[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tskills: Skill[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tprivate promptsOverride?: (base: { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tprompts: PromptTemplate[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tprivate themesOverride?: (base: { themes: Theme[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tthemes: Theme[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tprivate agentsFilesOverride?: (base: { agentsFiles: Array<{ path: string; content?: string }> }) => {\n\t\tagentsFiles: Array<{ path: string; content?: string }>;\n\t};\n\tprivate systemPromptOverride?: (base: string | undefined) => string | undefined;\n\tprivate appendSystemPromptOverride?: (base: string[]) => string[];\n\n\tprivate extensionsResult: LoadExtensionsResult;\n\tprivate skills: Skill[];\n\tprivate skillDiagnostics: ResourceDiagnostic[];\n\tprivate prompts: PromptTemplate[];\n\tprivate promptDiagnostics: ResourceDiagnostic[];\n\tprivate themes: Theme[];\n\tprivate themeDiagnostics: ResourceDiagnostic[];\n\tprivate agentsFiles: Array<{ path: string; content?: string }>;\n\tprivate systemPrompt?: string;\n\tprivate appendSystemPrompt: string[];\n\tprivate lastSkillPaths: string[];\n\tprivate extensionSkillSourceInfos: Map<string, SourceInfo>;\n\tprivate extensionPromptSourceInfos: Map<string, SourceInfo>;\n\tprivate extensionThemeSourceInfos: Map<string, SourceInfo>;\n\tprivate lastPromptPaths: string[];\n\tprivate lastThemePaths: string[];\n\n\tconstructor(options: DefaultResourceLoaderOptions) {\n\t\tthis.cwd = resolvePath(options.cwd);\n\t\tthis.agentDir = resolvePath(options.agentDir);\n\t\tthis.settingsManager = options.settingsManager ?? SettingsManager.create(this.cwd, this.agentDir);\n\t\tthis.eventBus = options.eventBus ?? createEventBus();\n\t\tthis.packageManager = new DefaultPackageManager({\n\t\t\tcwd: this.cwd,\n\t\t\tagentDir: this.agentDir,\n\t\t\tsettingsManager: this.settingsManager,\n\t\t});\n\t\tthis.additionalExtensionPaths = options.additionalExtensionPaths ?? [];\n\t\tthis.additionalSkillPaths = options.additionalSkillPaths ?? [];\n\t\tthis.additionalPromptTemplatePaths = options.additionalPromptTemplatePaths ?? [];\n\t\tthis.additionalThemePaths = options.additionalThemePaths ?? [];\n\t\tthis.extensionFactories = options.extensionFactories ?? [];\n\t\tthis.noExtensions = options.noExtensions ?? false;\n\t\tthis.noSkills = options.noSkills ?? false;\n\t\tthis.noPromptTemplates = options.noPromptTemplates ?? false;\n\t\tthis.noThemes = options.noThemes ?? false;\n\t\tthis.noContextFiles = options.noContextFiles ?? false;\n\t\tthis.systemPromptSource = options.systemPrompt;\n\t\tthis.appendSystemPromptSource = options.appendSystemPrompt;\n\t\tthis.extensionsOverride = options.extensionsOverride;\n\t\tthis.skillsOverride = options.skillsOverride;\n\t\tthis.promptsOverride = options.promptsOverride;\n\t\tthis.themesOverride = options.themesOverride;\n\t\tthis.agentsFilesOverride = options.agentsFilesOverride;\n\t\tthis.systemPromptOverride = options.systemPromptOverride;\n\t\tthis.appendSystemPromptOverride = options.appendSystemPromptOverride;\n\n\t\tthis.extensionsResult = { extensions: [], errors: [], runtime: createExtensionRuntime() };\n\t\tthis.skills = [];\n\t\tthis.skillDiagnostics = [];\n\t\tthis.prompts = [];\n\t\tthis.promptDiagnostics = [];\n\t\tthis.themes = [];\n\t\tthis.themeDiagnostics = [];\n\t\tthis.agentsFiles = [];\n\t\tthis.appendSystemPrompt = [];\n\t\tthis.lastSkillPaths = [];\n\t\tthis.extensionSkillSourceInfos = new Map();\n\t\tthis.extensionPromptSourceInfos = new Map();\n\t\tthis.extensionThemeSourceInfos = new Map();\n\t\tthis.lastPromptPaths = [];\n\t\tthis.lastThemePaths = [];\n\t}\n\n\tgetExtensions(): LoadExtensionsResult {\n\t\treturn this.extensionsResult;\n\t}\n\n\tgetSkills(): { skills: Skill[]; diagnostics: ResourceDiagnostic[] } {\n\t\treturn { skills: this.skills, diagnostics: this.skillDiagnostics };\n\t}\n\n\tgetPrompts(): { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] } {\n\t\treturn { prompts: this.prompts, diagnostics: this.promptDiagnostics };\n\t}\n\n\tgetThemes(): { themes: Theme[]; diagnostics: ResourceDiagnostic[] } {\n\t\treturn { themes: this.themes, diagnostics: this.themeDiagnostics };\n\t}\n\n\tgetAgentsFiles(): { agentsFiles: Array<{ path: string; content?: string }> } {\n\t\treturn { agentsFiles: this.agentsFiles };\n\t}\n\n\tgetSystemPrompt(): string | undefined {\n\t\treturn this.systemPrompt;\n\t}\n\n\tgetAppendSystemPrompt(): string[] {\n\t\treturn this.appendSystemPrompt;\n\t}\n\n\textendResources(paths: ResourceExtensionPaths): void {\n\t\tconst skillPaths = this.normalizeExtensionPaths(paths.skillPaths ?? []);\n\t\tconst promptPaths = this.normalizeExtensionPaths(paths.promptPaths ?? []);\n\t\tconst themePaths = this.normalizeExtensionPaths(paths.themePaths ?? []);\n\n\t\tfor (const entry of skillPaths) {\n\t\t\tthis.extensionSkillSourceInfos.set(entry.path, createSourceInfo(entry.path, entry.metadata));\n\t\t}\n\t\tfor (const entry of promptPaths) {\n\t\t\tthis.extensionPromptSourceInfos.set(entry.path, createSourceInfo(entry.path, entry.metadata));\n\t\t}\n\t\tfor (const entry of themePaths) {\n\t\t\tthis.extensionThemeSourceInfos.set(entry.path, createSourceInfo(entry.path, entry.metadata));\n\t\t}\n\n\t\tif (skillPaths.length > 0) {\n\t\t\tthis.lastSkillPaths = this.mergePaths(\n\t\t\t\tthis.lastSkillPaths,\n\t\t\t\tskillPaths.map((entry) => entry.path),\n\t\t\t);\n\t\t\tthis.updateSkillsFromPaths(this.lastSkillPaths);\n\t\t}\n\n\t\tif (promptPaths.length > 0) {\n\t\t\tthis.lastPromptPaths = this.mergePaths(\n\t\t\t\tthis.lastPromptPaths,\n\t\t\t\tpromptPaths.map((entry) => entry.path),\n\t\t\t);\n\t\t\tthis.updatePromptsFromPaths(this.lastPromptPaths);\n\t\t}\n\n\t\tif (themePaths.length > 0) {\n\t\t\tthis.lastThemePaths = this.mergePaths(\n\t\t\t\tthis.lastThemePaths,\n\t\t\t\tthemePaths.map((entry) => entry.path),\n\t\t\t);\n\t\t\tthis.updateThemesFromPaths(this.lastThemePaths);\n\t\t}\n\t}\n\n\tasync reload(): Promise<void> {\n\t\tawait this.settingsManager.reload();\n\t\tconst resolvedPaths = await this.packageManager.resolve();\n\t\tconst cliExtensionPaths = await this.packageManager.resolveExtensionSources(this.additionalExtensionPaths, {\n\t\t\ttemporary: true,\n\t\t});\n\t\tconst metadataByPath = new Map<string, PathMetadata>();\n\n\t\tthis.extensionSkillSourceInfos = new Map();\n\t\tthis.extensionPromptSourceInfos = new Map();\n\t\tthis.extensionThemeSourceInfos = new Map();\n\n\t\t// Helper to extract enabled paths and store metadata\n\t\tconst getEnabledResources = (\n\t\t\tresources: Array<{ path: string; enabled: boolean; metadata: PathMetadata }>,\n\t\t): Array<{ path: string; enabled: boolean; metadata: PathMetadata }> => {\n\t\t\tfor (const r of resources) {\n\t\t\t\tif (!metadataByPath.has(r.path)) {\n\t\t\t\t\tmetadataByPath.set(r.path, r.metadata);\n\t\t\t\t}\n\t\t\t}\n\t\t\treturn resources.filter((r) => r.enabled);\n\t\t};\n\n\t\tconst getEnabledPaths = (\n\t\t\tresources: Array<{ path: string; enabled: boolean; metadata: PathMetadata }>,\n\t\t): string[] => getEnabledResources(resources).map((r) => r.path);\n\t\tconst enabledExtensions = getEnabledPaths(resolvedPaths.extensions);\n\t\tconst enabledSkillResources = getEnabledResources(resolvedPaths.skills);\n\t\tconst enabledPrompts = getEnabledPaths(resolvedPaths.prompts);\n\t\tconst enabledThemes = getEnabledPaths(resolvedPaths.themes);\n\n\t\tconst mapSkillPath = (resource: { path: string; metadata: PathMetadata }): string => {\n\t\t\tif (resource.metadata.source !== \"auto\" && resource.metadata.origin !== \"package\") {\n\t\t\t\treturn resource.path;\n\t\t\t}\n\t\t\ttry {\n\t\t\t\tconst stats = statSync(resource.path);\n\t\t\t\tif (!stats.isDirectory()) {\n\t\t\t\t\treturn resource.path;\n\t\t\t\t}\n\t\t\t} catch {\n\t\t\t\treturn resource.path;\n\t\t\t}\n\t\t\tconst skillFile = join(resource.path, \"SKILL.md\");\n\t\t\tif (existsSync(skillFile)) {\n\t\t\t\tif (!metadataByPath.has(skillFile)) {\n\t\t\t\t\tmetadataByPath.set(skillFile, resource.metadata);\n\t\t\t\t}\n\t\t\t\treturn skillFile;\n\t\t\t}\n\t\t\treturn resource.path;\n\t\t};\n\n\t\tconst enabledSkills = enabledSkillResources.map(mapSkillPath);\n\n\t\t// Add CLI paths metadata\n\t\tfor (const r of cliExtensionPaths.extensions) {\n\t\t\tif (!metadataByPath.has(r.path)) {\n\t\t\t\tmetadataByPath.set(r.path, { source: \"cli\", scope: \"temporary\", origin: \"top-level\" });\n\t\t\t}\n\t\t}\n\t\tfor (const r of cliExtensionPaths.skills) {\n\t\t\tif (!metadataByPath.has(r.path)) {\n\t\t\t\tmetadataByPath.set(r.path, { source: \"cli\", scope: \"temporary\", origin: \"top-level\" });\n\t\t\t}\n\t\t}\n\n\t\tconst cliEnabledExtensions = getEnabledPaths(cliExtensionPaths.extensions);\n\t\tconst cliEnabledSkills = getEnabledPaths(cliExtensionPaths.skills);\n\t\tconst cliEnabledPrompts = getEnabledPaths(cliExtensionPaths.prompts);\n\t\tconst cliEnabledThemes = getEnabledPaths(cliExtensionPaths.themes);\n\n\t\tconst extensionPaths = this.noExtensions\n\t\t\t? cliEnabledExtensions\n\t\t\t: this.mergePaths(cliEnabledExtensions, enabledExtensions);\n\n\t\tconst extensionsResult = await loadExtensions(extensionPaths, this.cwd, this.eventBus);\n\t\tconst inlineExtensions = await this.loadExtensionFactories(extensionsResult.runtime);\n\t\textensionsResult.extensions.push(...inlineExtensions.extensions);\n\t\textensionsResult.errors.push(...inlineExtensions.errors);\n\n\t\t// Detect extension conflicts (tools, commands, flags with same names from different extensions)\n\t\t// Keep all extensions loaded. Conflicts are reported as diagnostics, and precedence is handled by load order.\n\t\tconst conflicts = this.detectExtensionConflicts(extensionsResult.extensions);\n\t\tfor (const conflict of conflicts) {\n\t\t\textensionsResult.errors.push({ path: conflict.path, error: conflict.message });\n\t\t}\n\n\t\tfor (const p of this.additionalExtensionPaths) {\n\t\t\tif (isLocalPath(p)) {\n\t\t\t\tconst resolved = this.resolveResourcePath(p);\n\t\t\t\tif (!existsSync(resolved)) {\n\t\t\t\t\textensionsResult.errors.push({ path: resolved, error: `Extension path does not exist: ${resolved}` });\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\t\tthis.extensionsResult = this.extensionsOverride ? this.extensionsOverride(extensionsResult) : extensionsResult;\n\t\tthis.applyExtensionSourceInfo(this.extensionsResult.extensions, metadataByPath);\n\n\t\tconst skillPaths = this.noSkills\n\t\t\t? this.mergePaths(cliEnabledSkills, this.additionalSkillPaths)\n\t\t\t: this.mergePaths([...cliEnabledSkills, ...enabledSkills], this.additionalSkillPaths);\n\n\t\tthis.lastSkillPaths = skillPaths;\n\t\tthis.updateSkillsFromPaths(skillPaths, metadataByPath);\n\t\tfor (const p of this.additionalSkillPaths) {\n\t\t\tif (isLocalPath(p)) {\n\t\t\t\tconst resolved = this.resolveResourcePath(p);\n\t\t\t\tif (!existsSync(resolved) && !this.skillDiagnostics.some((d) => d.path === resolved)) {\n\t\t\t\t\tthis.skillDiagnostics.push({ type: \"error\", message: \"Skill path does not exist\", path: resolved });\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\n\t\tconst promptPaths = this.noPromptTemplates\n\t\t\t? this.mergePaths(cliEnabledPrompts, this.additionalPromptTemplatePaths)\n\t\t\t: this.mergePaths([...cliEnabledPrompts, ...enabledPrompts], this.additionalPromptTemplatePaths);\n\n\t\tthis.lastPromptPaths = promptPaths;\n\t\tthis.updatePromptsFromPaths(promptPaths, metadataByPath);\n\t\tfor (const p of this.additionalPromptTemplatePaths) {\n\t\t\tif (isLocalPath(p)) {\n\t\t\t\tconst resolved = this.resolveResourcePath(p);\n\t\t\t\tif (!existsSync(resolved) && !this.promptDiagnostics.some((d) => d.path === resolved)) {\n\t\t\t\t\tthis.promptDiagnostics.push({\n\t\t\t\t\t\ttype: \"error\",\n\t\t\t\t\t\tmessage: \"Prompt template path does not exist\",\n\t\t\t\t\t\tpath: resolved,\n\t\t\t\t\t});\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\n\t\tconst themePaths = this.noThemes\n\t\t\t? this.mergePaths(cliEnabledThemes, this.additionalThemePaths)\n\t\t\t: this.mergePaths([...cliEnabledThemes, ...enabledThemes], this.additionalThemePaths);\n\n\t\tthis.lastThemePaths = themePaths;\n\t\tthis.updateThemesFromPaths(themePaths, metadataByPath);\n\t\tfor (const p of this.additionalThemePaths) {\n\t\t\tconst resolved = this.resolveResourcePath(p);\n\t\t\tif (!existsSync(resolved) && !this.themeDiagnostics.some((d) => d.path === resolved)) {\n\t\t\t\tthis.themeDiagnostics.push({ type: \"error\", message: \"Theme path does not exist\", path: resolved });\n\t\t\t}\n\t\t}\n\n\t\tconst agentsFiles = {\n\t\t\tagentsFiles: this.noContextFiles\n\t\t\t\t? []\n\t\t\t\t: loadProjectContextFiles({\n\t\t\t\t\t\tcwd: this.cwd,\n\t\t\t\t\t\tagentDir: this.agentDir,\n\t\t\t\t\t\tprojectTrusted: this.settingsManager.isProjectTrusted(),\n\t\t\t\t\t}),\n\t\t};\n\t\tconst resolvedAgentsFiles = this.agentsFilesOverride ? this.agentsFilesOverride(agentsFiles) : agentsFiles;\n\t\tthis.agentsFiles = resolvedAgentsFiles.agentsFiles;\n\n\t\tconst baseSystemPrompt = resolvePromptInput(\n\t\t\tthis.systemPromptSource ?? this.discoverSystemPromptFile(),\n\t\t\t\"system prompt\",\n\t\t);\n\t\tthis.systemPrompt = this.systemPromptOverride ? this.systemPromptOverride(baseSystemPrompt) : baseSystemPrompt;\n\n\t\tconst appendSources =\n\t\t\tthis.appendSystemPromptSource ??\n\t\t\t(this.discoverAppendSystemPromptFile() ? [this.discoverAppendSystemPromptFile()!] : []);\n\t\tconst baseAppend = appendSources\n\t\t\t.map((s) => resolvePromptInput(s, \"append system prompt\"))\n\t\t\t.filter((s): s is string => s !== undefined);\n\t\tthis.appendSystemPrompt = this.appendSystemPromptOverride\n\t\t\t? this.appendSystemPromptOverride(baseAppend)\n\t\t\t: baseAppend;\n\t}\n\n\tprivate normalizeExtensionPaths(\n\t\tentries: Array<{ path: string; metadata: PathMetadata }>,\n\t): Array<{ path: string; metadata: PathMetadata }> {\n\t\treturn entries.map((entry) => {\n\t\t\tconst metadata = entry.metadata.baseDir\n\t\t\t\t? { ...entry.metadata, baseDir: this.resolveResourcePath(entry.metadata.baseDir) }\n\t\t\t\t: entry.metadata;\n\t\t\treturn {\n\t\t\t\tpath: this.resolveResourcePath(entry.path),\n\t\t\t\tmetadata,\n\t\t\t};\n\t\t});\n\t}\n\n\tprivate updateSkillsFromPaths(skillPaths: string[], metadataByPath?: Map<string, PathMetadata>): void {\n\t\tlet skillsResult: { skills: Skill[]; diagnostics: ResourceDiagnostic[] };\n\t\tif (this.noSkills && skillPaths.length === 0) {\n\t\t\tskillsResult = { skills: [], diagnostics: [] };\n\t\t} else {\n\t\t\tskillsResult = loadSkills({\n\t\t\t\tcwd: this.cwd,\n\t\t\t\tagentDir: this.agentDir,\n\t\t\t\tskillPaths,\n\t\t\t\tincludeDefaults: false,\n\t\t\t});\n\t\t}\n\t\tconst resolvedSkills = this.skillsOverride ? this.skillsOverride(skillsResult) : skillsResult;\n\t\tthis.skills = resolvedSkills.skills.map((skill) => ({\n\t\t\t...skill,\n\t\t\tsourceInfo:\n\t\t\t\tthis.findSourceInfoForPath(skill.filePath, this.extensionSkillSourceInfos, metadataByPath) ??\n\t\t\t\tskill.sourceInfo ??\n\t\t\t\tthis.getDefaultSourceInfoForPath(skill.filePath),\n\t\t}));\n\t\tthis.skillDiagnostics = resolvedSkills.diagnostics;\n\t}\n\n\tprivate updatePromptsFromPaths(promptPaths: string[], metadataByPath?: Map<string, PathMetadata>): void {\n\t\tlet promptsResult: { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] };\n\t\tif (this.noPromptTemplates && promptPaths.length === 0) {\n\t\t\tpromptsResult = { prompts: [], diagnostics: [] };\n\t\t} else {\n\t\t\tconst allPrompts = loadPromptTemplates({\n\t\t\t\tcwd: this.cwd,\n\t\t\t\tagentDir: this.agentDir,\n\t\t\t\tpromptPaths,\n\t\t\t\tincludeDefaults: false,\n\t\t\t});\n\t\t\tpromptsResult = this.dedupePrompts(allPrompts);\n\t\t}\n\t\tconst resolvedPrompts = this.promptsOverride ? this.promptsOverride(promptsResult) : promptsResult;\n\t\tthis.prompts = resolvedPrompts.prompts.map((prompt) => ({\n\t\t\t...prompt,\n\t\t\tsourceInfo:\n\t\t\t\tthis.findSourceInfoForPath(prompt.filePath, this.extensionPromptSourceInfos, metadataByPath) ??\n\t\t\t\tprompt.sourceInfo ??\n\t\t\t\tthis.getDefaultSourceInfoForPath(prompt.filePath),\n\t\t}));\n\t\tthis.promptDiagnostics = resolvedPrompts.diagnostics;\n\t}\n\n\tprivate updateThemesFromPaths(themePaths: string[], metadataByPath?: Map<string, PathMetadata>): void {\n\t\tlet themesResult: { themes: Theme[]; diagnostics: ResourceDiagnostic[] };\n\t\tif (this.noThemes && themePaths.length === 0) {\n\t\t\tthemesResult = { themes: [], diagnostics: [] };\n\t\t} else {\n\t\t\tconst loaded = this.loadThemes(themePaths, false);\n\t\t\tconst deduped = this.dedupeThemes(loaded.themes);\n\t\t\tthemesResult = { themes: deduped.themes, diagnostics: [...loaded.diagnostics, ...deduped.diagnostics] };\n\t\t}\n\t\tconst resolvedThemes = this.themesOverride ? this.themesOverride(themesResult) : themesResult;\n\t\tthis.themes = resolvedThemes.themes.map((theme) => {\n\t\t\tconst sourcePath = theme.sourcePath;\n\t\t\ttheme.sourceInfo = sourcePath\n\t\t\t\t? (this.findSourceInfoForPath(sourcePath, this.extensionThemeSourceInfos, metadataByPath) ??\n\t\t\t\t\ttheme.sourceInfo ??\n\t\t\t\t\tthis.getDefaultSourceInfoForPath(sourcePath))\n\t\t\t\t: theme.sourceInfo;\n\t\t\treturn theme;\n\t\t});\n\t\tthis.themeDiagnostics = resolvedThemes.diagnostics;\n\t}\n\n\tprivate applyExtensionSourceInfo(extensions: Extension[], metadataByPath: Map<string, PathMetadata>): void {\n\t\tfor (const extension of extensions) {\n\t\t\textension.sourceInfo =\n\t\t\t\tthis.findSourceInfoForPath(extension.path, undefined, metadataByPath) ??\n\t\t\t\tthis.getDefaultSourceInfoForPath(extension.path);\n\t\t\tfor (const command of extension.commands.values()) {\n\t\t\t\tcommand.sourceInfo = extension.sourceInfo;\n\t\t\t}\n\t\t\tfor (const tool of extension.tools.values()) {\n\t\t\t\ttool.sourceInfo = extension.sourceInfo;\n\t\t\t}\n\t\t}\n\t}\n\n\tprivate findSourceInfoForPath(\n\t\tresourcePath: string,\n\t\textraSourceInfos?: Map<string, SourceInfo>,\n\t\tmetadataByPath?: Map<string, PathMetadata>,\n\t): SourceInfo | undefined {\n\t\tif (!resourcePath) {\n\t\t\treturn undefined;\n\t\t}\n\n\t\tif (resourcePath.startsWith(\"<\")) {\n\t\t\treturn this.getDefaultSourceInfoForPath(resourcePath);\n\t\t}\n\n\t\tconst normalizedResourcePath = resolve(resourcePath);\n\t\tif (extraSourceInfos) {\n\t\t\tfor (const [sourcePath, sourceInfo] of extraSourceInfos.entries()) {\n\t\t\t\tconst normalizedSourcePath = resolve(sourcePath);\n\t\t\t\tif (\n\t\t\t\t\tnormalizedResourcePath === normalizedSourcePath ||\n\t\t\t\t\tnormalizedResourcePath.startsWith(`${normalizedSourcePath}${sep}`)\n\t\t\t\t) {\n\t\t\t\t\treturn { ...sourceInfo, path: resourcePath };\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\n\t\tif (metadataByPath) {\n\t\t\tconst exact = metadataByPath.get(normalizedResourcePath) ?? metadataByPath.get(resourcePath);\n\t\t\tif (exact) {\n\t\t\t\treturn createSourceInfo(resourcePath, exact);\n\t\t\t}\n\n\t\t\tfor (const [sourcePath, metadata] of metadataByPath.entries()) {\n\t\t\t\tconst normalizedSourcePath = resolve(sourcePath);\n\t\t\t\tif (\n\t\t\t\t\tnormalizedResourcePath === normalizedSourcePath ||\n\t\t\t\t\tnormalizedResourcePath.startsWith(`${normalizedSourcePath}${sep}`)\n\t\t\t\t) {\n\t\t\t\t\treturn createSourceInfo(resourcePath, metadata);\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\n\t\treturn undefined;\n\t}\n\n\tprivate getDefaultSourceInfoForPath(filePath: string): SourceInfo {\n\t\tif (filePath.startsWith(\"<\") && filePath.endsWith(\">\")) {\n\t\t\treturn {\n\t\t\t\tpath: filePath,\n\t\t\t\tsource: filePath.slice(1, -1).split(\":\")[0] || \"temporary\",\n\t\t\t\tscope: \"temporary\",\n\t\t\t\torigin: \"top-level\",\n\t\t\t};\n\t\t}\n\n\t\tconst normalizedPath = resolve(filePath);\n\t\tconst agentRoots = [\n\t\t\tjoin(this.agentDir, \"skills\"),\n\t\t\tjoin(this.agentDir, \"prompts\"),\n\t\t\tjoin(this.agentDir, \"themes\"),\n\t\t\tjoin(this.agentDir, \"extensions\"),\n\t\t];\n\t\tconst projectRoots = [\n\t\t\tjoin(this.cwd, CONFIG_DIR_NAME, \"skills\"),\n\t\t\tjoin(this.cwd, CONFIG_DIR_NAME, \"prompts\"),\n\t\t\tjoin(this.cwd, CONFIG_DIR_NAME, \"themes\"),\n\t\t\tjoin(this.cwd, CONFIG_DIR_NAME, \"extensions\"),\n\t\t];\n\n\t\tfor (const root of agentRoots) {\n\t\t\tif (this.isUnderPath(normalizedPath, root)) {\n\t\t\t\treturn { path: filePath, source: \"local\", scope: \"user\", origin: \"top-level\", baseDir: root };\n\t\t\t}\n\t\t}\n\n\t\tfor (const root of projectRoots) {\n\t\t\tif (this.isUnderPath(normalizedPath, root)) {\n\t\t\t\treturn { path: filePath, source: \"local\", scope: \"project\", origin: \"top-level\", baseDir: root };\n\t\t\t}\n\t\t}\n\n\t\treturn {\n\t\t\tpath: filePath,\n\t\t\tsource: \"local\",\n\t\t\tscope: \"temporary\",\n\t\t\torigin: \"top-level\",\n\t\t\tbaseDir: statSync(normalizedPath).isDirectory() ? normalizedPath : resolve(normalizedPath, \"..\"),\n\t\t};\n\t}\n\n\tprivate mergePaths(primary: string[], additional: string[]): string[] {\n\t\tconst merged: string[] = [];\n\t\tconst seen = new Set<string>();\n\n\t\tfor (const p of [...primary, ...additional]) {\n\t\t\tconst resolved = this.resolveResourcePath(p);\n\t\t\tconst canonicalPath = canonicalizePath(resolved);\n\t\t\tif (seen.has(canonicalPath)) continue;\n\t\t\tseen.add(canonicalPath);\n\t\t\tmerged.push(resolved);\n\t\t}\n\n\t\treturn merged;\n\t}\n\n\tprivate resolveResourcePath(p: string): string {\n\t\treturn resolvePath(p, this.cwd, { trim: true });\n\t}\n\n\tprivate loadThemes(\n\t\tpaths: string[],\n\t\tincludeDefaults: boolean = true,\n\t): {\n\t\tthemes: Theme[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t} {\n\t\tconst themes: Theme[] = [];\n\t\tconst diagnostics: ResourceDiagnostic[] = [];\n\t\tif (includeDefaults) {\n\t\t\tconst defaultDirs = [join(this.agentDir, \"themes\"), join(this.cwd, CONFIG_DIR_NAME, \"themes\")];\n\n\t\t\tfor (const dir of defaultDirs) {\n\t\t\t\tthis.loadThemesFromDir(dir, themes, diagnostics);\n\t\t\t}\n\t\t}\n\n\t\tfor (const p of paths) {\n\t\t\tconst resolved = this.resolveResourcePath(p);\n\t\t\tif (!existsSync(resolved)) {\n\t\t\t\tdiagnostics.push({ type: \"warning\", message: \"theme path does not exist\", path: resolved });\n\t\t\t\tcontinue;\n\t\t\t}\n\n\t\t\ttry {\n\t\t\t\tconst stats = statSync(resolved);\n\t\t\t\tif (stats.isDirectory()) {\n\t\t\t\t\tthis.loadThemesFromDir(resolved, themes, diagnostics);\n\t\t\t\t} else if (stats.isFile() && resolved.endsWith(\".json\")) {\n\t\t\t\t\tthis.loadThemeFromFile(resolved, themes, diagnostics);\n\t\t\t\t} else {\n\t\t\t\t\tdiagnostics.push({ type: \"warning\", message: \"theme path is not a json file\", path: resolved });\n\t\t\t\t}\n\t\t\t} catch (error) {\n\t\t\t\tconst message = error instanceof Error ? error.message : \"failed to read theme path\";\n\t\t\t\tdiagnostics.push({ type: \"warning\", message, path: resolved });\n\t\t\t}\n\t\t}\n\n\t\treturn { themes, diagnostics };\n\t}\n\n\tprivate loadThemesFromDir(dir: string, themes: Theme[], diagnostics: ResourceDiagnostic[]): void {\n\t\tif (!existsSync(dir)) {\n\t\t\treturn;\n\t\t}\n\n\t\ttry {\n\t\t\tconst entries = readdirSync(dir, { withFileTypes: true });\n\t\t\tfor (const entry of entries) {\n\t\t\t\tlet isFile = entry.isFile();\n\t\t\t\tif (entry.isSymbolicLink()) {\n\t\t\t\t\ttry {\n\t\t\t\t\t\tisFile = statSync(join(dir, entry.name)).isFile();\n\t\t\t\t\t} catch {\n\t\t\t\t\t\tcontinue;\n\t\t\t\t\t}\n\t\t\t\t}\n\t\t\t\tif (!isFile) {\n\t\t\t\t\tcontinue;\n\t\t\t\t}\n\t\t\t\tif (!entry.name.endsWith(\".json\")) {\n\t\t\t\t\tcontinue;\n\t\t\t\t}\n\t\t\t\tthis.loadThemeFromFile(join(dir, entry.name), themes, diagnostics);\n\t\t\t}\n\t\t} catch (error) {\n\t\t\tconst message = error instanceof Error ? error.message : \"failed to read theme directory\";\n\t\t\tdiagnostics.push({ type: \"warning\", message, path: dir });\n\t\t}\n\t}\n\n\tprivate loadThemeFromFile(filePath: string, themes: Theme[], diagnostics: ResourceDiagnostic[]): void {\n\t\ttry {\n\t\t\tthemes.push(loadThemeFromPath(filePath));\n\t\t} catch (error) {\n\t\t\tconst message = error instanceof Error ? error.message : \"failed to load theme\";\n\t\t\tdiagnostics.push({ type: \"warning\", message, path: filePath });\n\t\t}\n\t}\n\n\tprivate async loadExtensionFactories(runtime: ExtensionRuntime): Promise<{\n\t\textensions: Extension[];\n\t\terrors: Array<{ path: string; error: string }>;\n\t}> {\n\t\tconst extensions: Extension[] = [];\n\t\tconst errors: Array<{ path: string; error: string }> = [];\n\n\t\tfor (const [index, factory] of this.extensionFactories.entries()) {\n\t\t\tconst extensionPath = `<inline:${index + 1}>`;\n\t\t\ttry {\n\t\t\t\tconst extension = await loadExtensionFromFactory(factory, this.cwd, this.eventBus, runtime, extensionPath);\n\t\t\t\textensions.push(extension);\n\t\t\t} catch (error) {\n\t\t\t\tconst message = error instanceof Error ? error.message : \"failed to load extension\";\n\t\t\t\terrors.push({ path: extensionPath, error: message });\n\t\t\t}\n\t\t}\n\n\t\treturn { extensions, errors };\n\t}\n\n\tprivate dedupePrompts(prompts: PromptTemplate[]): { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] } {\n\t\tconst seen = new Map<string, PromptTemplate>();\n\t\tconst diagnostics: ResourceDiagnostic[] = [];\n\n\t\tfor (const prompt of prompts) {\n\t\t\tconst existing = seen.get(prompt.name);\n\t\t\tif (existing) {\n\t\t\t\tdiagnostics.push({\n\t\t\t\t\ttype: \"collision\",\n\t\t\t\t\tmessage: `name \"/${prompt.name}\" collision`,\n\t\t\t\t\tpath: prompt.filePath,\n\t\t\t\t\tcollision: {\n\t\t\t\t\t\tresourceType: \"prompt\",\n\t\t\t\t\t\tname: prompt.name,\n\t\t\t\t\t\twinnerPath: existing.filePath,\n\t\t\t\t\t\tloserPath: prompt.filePath,\n\t\t\t\t\t},\n\t\t\t\t});\n\t\t\t} else {\n\t\t\t\tseen.set(prompt.name, prompt);\n\t\t\t}\n\t\t}\n\n\t\treturn { prompts: Array.from(seen.values()), diagnostics };\n\t}\n\n\tprivate dedupeThemes(themes: Theme[]): { themes: Theme[]; diagnostics: ResourceDiagnostic[] } {\n\t\tconst seen = new Map<string, Theme>();\n\t\tconst diagnostics: ResourceDiagnostic[] = [];\n\n\t\tfor (const t of themes) {\n\t\t\tconst name = t.name ?? \"unnamed\";\n\t\t\tconst existing = seen.get(name);\n\t\t\tif (existing) {\n\t\t\t\tdiagnostics.push({\n\t\t\t\t\ttype: \"collision\",\n\t\t\t\t\tmessage: `name \"${name}\" collision`,\n\t\t\t\t\tpath: t.sourcePath,\n\t\t\t\t\tcollision: {\n\t\t\t\t\t\tresourceType: \"theme\",\n\t\t\t\t\t\tname,\n\t\t\t\t\t\twinnerPath: existing.sourcePath ?? \"<builtin>\",\n\t\t\t\t\t\tloserPath: t.sourcePath ?? \"<builtin>\",\n\t\t\t\t\t},\n\t\t\t\t});\n\t\t\t} else {\n\t\t\t\tseen.set(name, t);\n\t\t\t}\n\t\t}\n\n\t\treturn { themes: Array.from(seen.values()), diagnostics };\n\t}\n\n\tprivate discoverSystemPromptFile(): string | undefined {\n\t\tconst projectPath = join(this.cwd, CONFIG_DIR_NAME, \"SYSTEM.md\");\n\t\tif (this.settingsManager.isProjectTrusted() && existsSync(projectPath)) {\n\t\t\treturn projectPath;\n\t\t}\n\n\t\tconst globalPath = join(this.agentDir, \"SYSTEM.md\");\n\t\tif (existsSync(globalPath)) {\n\t\t\treturn globalPath;\n\t\t}\n\n\t\treturn undefined;\n\t}\n\n\tprivate discoverAppendSystemPromptFile(): string | undefined {\n\t\tconst projectPath = join(this.cwd, CONFIG_DIR_NAME, \"APPEND_SYSTEM.md\");\n\t\tif (this.settingsManager.isProjectTrusted() && existsSync(projectPath)) {\n\t\t\treturn projectPath;\n\t\t}\n\n\t\tconst globalPath = join(this.agentDir, \"APPEND_SYSTEM.md\");\n\t\tif (existsSync(globalPath)) {\n\t\t\treturn globalPath;\n\t\t}\n\n\t\treturn undefined;\n\t}\n\n\tprivate isUnderPath(target: string, root: string): boolean {\n\t\tconst normalizedRoot = resolve(root);\n\t\tif (target === normalizedRoot) {\n\t\t\treturn true;\n\t\t}\n\t\tconst prefix = normalizedRoot.endsWith(sep) ? normalizedRoot : `${normalizedRoot}${sep}`;\n\t\treturn target.startsWith(prefix);\n\t}\n\n\tprivate detectExtensionConflicts(extensions: Extension[]): Array<{ path: string; message: string }> {\n\t\tconst conflicts: Array<{ path: string; message: string }> = [];\n\n\t\t// Track which extension registered each tool and flag\n\t\tconst toolOwners = new Map<string, string>();\n\t\tconst flagOwners = new Map<string, string>();\n\n\t\tfor (const ext of extensions) {\n\t\t\t// Check tools\n\t\t\tfor (const toolName of ext.tools.keys()) {\n\t\t\t\tconst existingOwner = toolOwners.get(toolName);\n\t\t\t\tif (existingOwner && existingOwner !== ext.path) {\n\t\t\t\t\tconflicts.push({\n\t\t\t\t\t\tpath: ext.path,\n\t\t\t\t\t\tmessage: `Tool \"${toolName}\" conflicts with ${existingOwner}`,\n\t\t\t\t\t});\n\t\t\t\t} else {\n\t\t\t\t\ttoolOwners.set(toolName, ext.path);\n\t\t\t\t}\n\t\t\t}\n\n\t\t\t// Check flags\n\t\t\tfor (const flagName of ext.flags.keys()) {\n\t\t\t\tconst existingOwner = flagOwners.get(flagName);\n\t\t\t\tif (existingOwner && existingOwner !== ext.path) {\n\t\t\t\t\tconflicts.push({\n\t\t\t\t\t\tpath: ext.path,\n\t\t\t\t\t\tmessage: `Flag \"--${flagName}\" conflicts with ${existingOwner}`,\n\t\t\t\t\t});\n\t\t\t\t} else {\n\t\t\t\t\tflagOwners.set(flagName, ext.path);\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\n\t\treturn conflicts;\n\t}\n}\n"]}

package/dist/core/resource-loader.js

@@ -79,25 +79,27 @@ export function loadProjectContextFiles(options) {
         contextFiles.push(globalContext);
         seenPaths.add(globalContext.path);
     }
-    const ancestorContextFiles = [];
-    let currentDir = resolvedCwd;
-    const root = resolve("/");
-    while (true) {
-        const contextFilesInDir = loadContextFilesFromDir(currentDir).filter((contextFile) => !seenPaths.has(contextFile.path));
-        if (contextFilesInDir.length > 0) {
-            ancestorContextFiles.unshift(...contextFilesInDir);
-            for (const contextFile of contextFilesInDir) {
-                seenPaths.add(contextFile.path);
-            }
-        }
-        if (currentDir === root)
-            break;
-        const parentDir = resolve(currentDir, "..");
-        if (parentDir === currentDir)
-            break;
-        currentDir = parentDir;
-    }
-    contextFiles.push(...ancestorContextFiles);
+    if (options.projectTrusted !== false) {
+        const ancestorContextFiles = [];
+        let currentDir = resolvedCwd;
+        const root = resolve("/");
+        while (true) {
+            const contextFilesInDir = loadContextFilesFromDir(currentDir).filter((contextFile) => !seenPaths.has(contextFile.path));
+            if (contextFilesInDir.length > 0) {
+                ancestorContextFiles.unshift(...contextFilesInDir);
+                for (const contextFile of contextFilesInDir) {
+                    seenPaths.add(contextFile.path);
+                }
+            }
+            if (currentDir === root)
+                break;
+            const parentDir = resolve(currentDir, "..");
+            if (parentDir === currentDir)
+                break;
+            currentDir = parentDir;
+        }
+        contextFiles.push(...ancestorContextFiles);
+    }
     return contextFiles;
 }
 export class DefaultResourceLoader {
@@ -360,7 +362,13 @@ export class DefaultResourceLoader {
             }
         }
         const agentsFiles = {
-            agentsFiles: this.noContextFiles ? [] : loadProjectContextFiles({ cwd: this.cwd, agentDir: this.agentDir }),
+            agentsFiles: this.noContextFiles
+                ? []
+                : loadProjectContextFiles({
+                    cwd: this.cwd,
+                    agentDir: this.agentDir,
+                    projectTrusted: this.settingsManager.isProjectTrusted(),
+                }),
         };
         const resolvedAgentsFiles = this.agentsFilesOverride ? this.agentsFilesOverride(agentsFiles) : agentsFiles;
         this.agentsFiles = resolvedAgentsFiles.agentsFiles;
@@ -694,7 +702,7 @@ export class DefaultResourceLoader {
     }
     discoverSystemPromptFile() {
         const projectPath = join(this.cwd, CONFIG_DIR_NAME, "SYSTEM.md");
-        if (existsSync(projectPath)) {
+        if (this.settingsManager.isProjectTrusted() && existsSync(projectPath)) {
             return projectPath;
         }
         const globalPath = join(this.agentDir, "SYSTEM.md");
@@ -705,7 +713,7 @@ export class DefaultResourceLoader {
     }
     discoverAppendSystemPromptFile() {
         const projectPath = join(this.cwd, CONFIG_DIR_NAME, "APPEND_SYSTEM.md");
-        if (existsSync(projectPath)) {
+        if (this.settingsManager.isProjectTrusted() && existsSync(projectPath)) {
             return projectPath;
         }
         const globalPath = join(this.agentDir, "APPEND_SYSTEM.md");