@caddis/cli 0.0.0 → 0.2.0

package/bundles/antigravity-plugin-extras/skills/data-loader/SKILL.md

@@ -0,0 +1,753 @@
+---
+name: data-loader
+context: fork
+description: Load data from files (Excel, JSON, CSV) into databases. Use when user needs to import data files into any database system. Database-agnostic - supports SQL Server, PostgreSQL, MySQL, SQLite, and others.
+---
+
+# Data Loader Skill
+
+Systematically load data from various file formats into database tables with validation, transformation, and error handling.
+
+## Trigger
+
+Activate when:
+- User says "load this Excel/JSON/CSV into the database"
+- User provides a data file for import
+- User needs to populate tables from external sources
+- User asks about ETL or data ingestion
+- User mentions "import data" or "data loading"
+
+---
+
+## Supported Formats
+
+| Format | Extensions | Library |
+|--------|-----------|---------|
+| Excel | `.xlsx`, `.xls` | `openpyxl`, `xlrd` |
+| JSON | `.json` | `json` (built-in) |
+| CSV | `.csv` | `pandas` |
+| Parquet | `.parquet` | `pyarrow` |
+| XML | `.xml` | `lxml` |
+
+## Supported Databases
+
+| Database | Connection String Pattern | Driver |
+|----------|--------------------------|--------|
+| SQL Server | `mssql+pyodbc://...` | `pyodbc` |
+| PostgreSQL | `postgresql://...` | `psycopg2` |
+| MySQL | `mysql+pymysql://...` | `pymysql` |
+| SQLite | `sqlite:///...` | Built-in |
+| Oracle | `oracle+cx_oracle://...` | `cx_Oracle` |
+
+---
+
+## Phase 1: Source Discovery
+
+### Objectives
+- Identify source file(s) and format
+- Understand data structure and schema
+- Assess data quality and volume
+
+### Actions
+
+1. **Identify source files**
+   ```python
+   from pathlib import Path
+   import pandas as pd
+   
+   # Find data files
+   source_path = Path("data/")
+   files = list(source_path.glob("*.xlsx")) + \
+           list(source_path.glob("*.json")) + \
+           list(source_path.glob("*.csv"))
+   
+   print(f"Found {len(files)} data files:")
+   for f in files:
+       print(f"  - {f.name} ({f.stat().st_size / 1024:.1f} KB)")
+   ```
+
+2. **Load and inspect data**
+   ```python
+   def load_source_file(file_path: Path) -> pd.DataFrame:
+       """Load data from various formats into DataFrame."""
+       suffix = file_path.suffix.lower()
+       
+       if suffix in ['.xlsx', '.xls']:
+           # Excel - may have multiple sheets
+           xlsx = pd.ExcelFile(file_path)
+           print(f"Excel sheets: {xlsx.sheet_names}")
+           df = pd.read_excel(file_path, sheet_name=0)  # First sheet
+           
+       elif suffix == '.json':
+           # JSON - handle nested structures
+           df = pd.read_json(file_path)
+           # For nested JSON:
+           # df = pd.json_normalize(json.load(open(file_path)))
+           
+       elif suffix == '.csv':
+           df = pd.read_csv(file_path)
+           
+       elif suffix == '.parquet':
+           df = pd.read_parquet(file_path)
+           
+       else:
+           raise ValueError(f"Unsupported format: {suffix}")
+       
+       return df
+   
+   # Load and inspect
+   df = load_source_file(Path("data/input.xlsx"))
+   print(f"\nShape: {df.shape}")
+   print(f"\nColumns:\n{df.dtypes}")
+   print(f"\nSample:\n{df.head()}")
+   ```
+
+3. **Infer schema**
+   ```python
+   def infer_sql_types(df: pd.DataFrame) -> dict:
+       """Map pandas dtypes to SQL types (database-agnostic)."""
+       type_mapping = {
+           'int64': 'INTEGER',
+           'float64': 'FLOAT',
+           'object': 'VARCHAR(255)',
+           'bool': 'BOOLEAN',
+           'datetime64[ns]': 'TIMESTAMP',
+           'date': 'DATE',
+       }
+       
+       schema = {}
+       for col in df.columns:
+           dtype = str(df[col].dtype)
+           sql_type = type_mapping.get(dtype, 'TEXT')
+           
+           # Refine VARCHAR length based on data
+           if dtype == 'object':
+               max_len = df[col].astype(str).str.len().max()
+               if max_len > 255:
+                   sql_type = 'TEXT'
+               else:
+                   sql_type = f'VARCHAR({min(max_len * 2, 255)})'
+           
+           schema[col] = sql_type
+       
+       return schema
+   
+   schema = infer_sql_types(df)
+   print("\nInferred Schema:")
+   for col, sql_type in schema.items():
+       print(f"  {col}: {sql_type}")
+   ```
+
+### Output
+
+```markdown
+## Source Discovery Report
+
+### Files Found
+| File | Format | Size | Records | Columns |
+|------|--------|------|---------|---------|
+| [filename] | [format] | [size] | [count] | [count] |
+
+### Schema Inference
+| Column | Source Type | SQL Type | Nullable | Sample Values |
+|--------|-------------|----------|----------|---------------|
+| [col] | [pandas dtype] | [SQL type] | [Yes/No] | [examples] |
+
+### Data Quality Notes
+- Missing values: [summary]
+- Duplicates: [count]
+- Date formats: [detected format]
+```
+
+---
+
+## Phase 2: Target Configuration
+
+### Objectives
+- Configure database connection
+- Define target table structure
+- Handle existing data (truncate/append/upsert)
+
+### Actions
+
+1. **Configure database connection (database-agnostic)**
+   ```python
+   from sqlalchemy import create_engine, text
+   from urllib.parse import quote_plus
+   
+   def get_db_engine(db_type: str, config: dict):
+       """Create database engine for any supported database."""
+       
+       if db_type == 'sqlserver':
+           # SQL Server with Windows Auth
+           conn_str = (
+               f"DRIVER={{ODBC Driver 17 for SQL Server}};"
+               f"SERVER={config['server']};"
+               f"DATABASE={config['database']};"
+               f"Trusted_Connection=yes;"
+           )
+           engine = create_engine(
+               f"mssql+pyodbc:///?odbc_connect={quote_plus(conn_str)}"
+           )
+       
+       elif db_type == 'postgresql':
+           engine = create_engine(
+               f"postgresql://{config['user']}:{config['password']}"
+               f"@{config['host']}:{config.get('port', 5432)}"
+               f"/{config['database']}"
+           )
+       
+       elif db_type == 'mysql':
+           engine = create_engine(
+               f"mysql+pymysql://{config['user']}:{config['password']}"
+               f"@{config['host']}:{config.get('port', 3306)}"
+               f"/{config['database']}"
+           )
+       
+       elif db_type == 'sqlite':
+           engine = create_engine(f"sqlite:///{config['database']}")
+       
+       else:
+           raise ValueError(f"Unsupported database: {db_type}")
+       
+       return engine
+   
+   # Example usage
+   engine = get_db_engine('sqlserver', {
+       'server': 'localhost',
+       'database': 'mydb'
+   })
+   ```
+
+2. **Define target table**
+   ```python
+   def create_table_ddl(
+       table_name: str,
+       schema: dict,
+       db_type: str = 'sqlserver',
+       primary_key: str = None
+   ) -> str:
+       """Generate CREATE TABLE DDL for any database."""
+       
+       # Database-specific type adjustments
+       type_adjustments = {
+           'sqlserver': {
+               'TIMESTAMP': 'DATETIME2',
+               'TEXT': 'NVARCHAR(MAX)',
+               'BOOLEAN': 'BIT'
+           },
+           'postgresql': {
+               'DATETIME2': 'TIMESTAMP',
+               'NVARCHAR(MAX)': 'TEXT',
+               'BIT': 'BOOLEAN'
+           },
+           'mysql': {
+               'DATETIME2': 'DATETIME',
+               'NVARCHAR(MAX)': 'LONGTEXT'
+           },
+           'sqlite': {
+               'DATETIME2': 'TEXT',
+               'NVARCHAR(MAX)': 'TEXT'
+           }
+       }
+       
+       adjustments = type_adjustments.get(db_type, {})
+       
+       columns = []
+       for col, sql_type in schema.items():
+           adjusted_type = adjustments.get(sql_type, sql_type)
+           pk = ' PRIMARY KEY' if col == primary_key else ''
+           columns.append(f"    {col} {adjusted_type}{pk}")
+       
+       # Add audit columns
+       if db_type == 'sqlserver':
+           columns.append("    _loaded_at DATETIME2 DEFAULT GETDATE()")
+       elif db_type == 'postgresql':
+           columns.append("    _loaded_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP")
+       elif db_type == 'mysql':
+           columns.append("    _loaded_at DATETIME DEFAULT CURRENT_TIMESTAMP")
+       else:
+           columns.append("    _loaded_at TEXT")
+       
+       ddl = f"CREATE TABLE {table_name} (\n"
+       ddl += ",\n".join(columns)
+       ddl += "\n);"
+       
+       return ddl
+   ```
+
+3. **Handle existing data**
+   ```python
+   def prepare_target_table(
+       engine,
+       table_name: str,
+       schema: dict,
+       mode: str = 'replace',  # 'replace', 'append', 'fail'
+       db_type: str = 'sqlserver'
+   ):
+       """Prepare target table for data loading."""
+       
+       with engine.connect() as conn:
+           # Check if table exists
+           if db_type == 'sqlserver':
+               exists_query = text(f"""
+                   SELECT 1 FROM INFORMATION_SCHEMA.TABLES 
+                   WHERE TABLE_NAME = '{table_name}'
+               """)
+           elif db_type in ['postgresql', 'mysql']:
+               exists_query = text(f"""
+                   SELECT 1 FROM information_schema.tables 
+                   WHERE table_name = '{table_name}'
+               """)
+           else:
+               exists_query = text(f"""
+                   SELECT 1 FROM sqlite_master 
+                   WHERE type='table' AND name='{table_name}'
+               """)
+           
+           exists = conn.execute(exists_query).fetchone() is not None
+           
+           if exists:
+               if mode == 'replace':
+                   conn.execute(text(f"DROP TABLE {table_name}"))
+                   conn.commit()
+                   print(f"Dropped existing table: {table_name}")
+               elif mode == 'fail':
+                   raise ValueError(f"Table {table_name} already exists")
+               elif mode == 'append':
+                   print(f"Will append to existing table: {table_name}")
+                   return  # Don't create, just append
+           
+           # Create new table
+           ddl = create_table_ddl(table_name, schema, db_type)
+           conn.execute(text(ddl))
+           conn.commit()
+           print(f"Created table: {table_name}")
+   ```
+
+---
+
+## Phase 3: Data Transformation
+
+### Objectives
+- Clean and validate data
+- Apply transformations
+- Handle data type conversions
+
+### Actions
+
+1. **Clean column names**
+   ```python
+   import re
+   
+   def clean_column_names(df: pd.DataFrame) -> pd.DataFrame:
+       """Standardize column names for database compatibility."""
+       df = df.copy()
+       
+       new_columns = {}
+       for col in df.columns:
+           # Convert to lowercase, replace spaces/special chars
+           clean = re.sub(r'[^\w]', '_', str(col).lower())
+           clean = re.sub(r'_+', '_', clean).strip('_')
+           new_columns[col] = clean
+       
+       df.rename(columns=new_columns, inplace=True)
+       return df
+   
+   df = clean_column_names(df)
+   ```
+
+2. **Handle data quality issues**
+   ```python
+   def clean_data(df: pd.DataFrame, config: dict = None) -> pd.DataFrame:
+       """Clean data for database loading."""
+       df = df.copy()
+       config = config or {}
+       
+       # Remove completely empty rows
+       df.dropna(how='all', inplace=True)
+       
+       # Handle duplicates
+       if config.get('remove_duplicates', False):
+           df.drop_duplicates(inplace=True)
+       
+       # Trim string columns
+       for col in df.select_dtypes(include=['object']).columns:
+           df[col] = df[col].astype(str).str.strip()
+           df[col] = df[col].replace(['nan', 'None', ''], None)
+       
+       # Convert date columns
+       date_columns = config.get('date_columns', [])
+       for col in date_columns:
+           if col in df.columns:
+               df[col] = pd.to_datetime(df[col], errors='coerce')
+       
+       # Fill nulls for required columns
+       required_columns = config.get('required_columns', {})
+       for col, default in required_columns.items():
+           if col in df.columns:
+               df[col].fillna(default, inplace=True)
+       
+       return df
+   
+   # Example
+   df = clean_data(df, {
+       'remove_duplicates': True,
+       'date_columns': ['created_date', 'modified_date'],
+       'required_columns': {'status': 'unknown'}
+   })
+   ```
+
+3. **Validate data**
+   ```python
+   def validate_data(df: pd.DataFrame, rules: dict) -> tuple[pd.DataFrame, pd.DataFrame]:
+       """Validate data and separate valid/invalid records."""
+       
+       errors = []
+       
+       for idx, row in df.iterrows():
+           row_errors = []
+           
+           # Required fields
+           for col in rules.get('required', []):
+               if pd.isna(row.get(col)) or row.get(col) == '':
+                   row_errors.append(f"Missing required field: {col}")
+           
+           # Numeric ranges
+           for col, (min_val, max_val) in rules.get('ranges', {}).items():
+               val = row.get(col)
+               if pd.notna(val) and not (min_val <= val <= max_val):
+                   row_errors.append(f"{col} out of range: {val}")
+           
+           # Pattern matching
+           for col, pattern in rules.get('patterns', {}).items():
+               val = str(row.get(col, ''))
+               if val and not re.match(pattern, val):
+                   row_errors.append(f"{col} invalid format: {val}")
+           
+           if row_errors:
+               errors.append({'index': idx, 'errors': row_errors})
+       
+       # Separate valid and invalid
+       invalid_indices = [e['index'] for e in errors]
+       valid_df = df[~df.index.isin(invalid_indices)]
+       invalid_df = df[df.index.isin(invalid_indices)]
+       
+       print(f"Valid records: {len(valid_df)}")
+       print(f"Invalid records: {len(invalid_df)}")
+       
+       return valid_df, invalid_df
+   
+   # Example
+   valid_df, invalid_df = validate_data(df, {
+       'required': ['customer_id', 'amount'],
+       'ranges': {'amount': (0, 1000000)},
+       'patterns': {'email': r'^[\w\.-]+@[\w\.-]+\.\w+$'}
+   })
+   ```
+
+---
+
+## Phase 4: Load Data
+
+### Objectives
+- Load data into target table
+- Handle batch processing for large files
+- Track load statistics
+
+### Actions
+
+1. **Load data with pandas**
+   ```python
+   from datetime import datetime
+   
+   def load_data(
+       df: pd.DataFrame,
+       engine,
+       table_name: str,
+       batch_size: int = 1000,
+       if_exists: str = 'append'
+   ) -> dict:
+       """Load DataFrame to database table."""
+       
+       start_time = datetime.now()
+       total_rows = len(df)
+       
+       # Add load timestamp
+       df['_loaded_at'] = datetime.now()
+       
+       # Load in batches for large datasets
+       if total_rows > batch_size:
+           loaded = 0
+           for i in range(0, total_rows, batch_size):
+               batch = df.iloc[i:i + batch_size]
+               batch.to_sql(
+                   table_name,
+                   engine,
+                   if_exists='append' if i > 0 else if_exists,
+                   index=False,
+                   method='multi'  # Faster bulk insert
+               )
+               loaded += len(batch)
+               print(f"Loaded {loaded}/{total_rows} rows...")
+       else:
+           df.to_sql(
+               table_name,
+               engine,
+               if_exists=if_exists,
+               index=False
+           )
+       
+       elapsed = (datetime.now() - start_time).total_seconds()
+       
+       return {
+           'table': table_name,
+           'rows_loaded': total_rows,
+           'elapsed_seconds': elapsed,
+           'rows_per_second': total_rows / elapsed if elapsed > 0 else 0
+       }
+   
+   # Execute load
+   stats = load_data(valid_df, engine, 'staging.customer_data')
+   print(f"\nLoad complete: {stats}")
+   ```
+
+2. **Handle errors and logging**
+   ```python
+   from loguru import logger
+   
+   def load_with_error_handling(
+       df: pd.DataFrame,
+       engine,
+       table_name: str,
+       error_table: str = None
+   ) -> dict:
+       """Load data with comprehensive error handling."""
+       
+       stats = {
+           'attempted': len(df),
+           'loaded': 0,
+           'failed': 0,
+           'errors': []
+       }
+       
+       try:
+           result = load_data(df, engine, table_name)
+           stats['loaded'] = result['rows_loaded']
+           logger.info(f"Successfully loaded {stats['loaded']} rows to {table_name}")
+           
+       except Exception as e:
+           logger.error(f"Bulk load failed: {e}")
+           
+           # Fall back to row-by-row loading
+           logger.info("Attempting row-by-row loading...")
+           
+           for idx, row in df.iterrows():
+               try:
+                   pd.DataFrame([row]).to_sql(
+                       table_name, engine, if_exists='append', index=False
+                   )
+                   stats['loaded'] += 1
+               except Exception as row_error:
+                   stats['failed'] += 1
+                   stats['errors'].append({
+                       'index': idx,
+                       'error': str(row_error)
+                   })
+           
+           # Save failed rows to error table
+           if error_table and stats['failed'] > 0:
+               failed_indices = [e['index'] for e in stats['errors']]
+               failed_df = df.loc[failed_indices]
+               failed_df['_error'] = [
+                   e['error'] for e in stats['errors']
+               ]
+               failed_df.to_sql(
+                   error_table, engine, if_exists='append', index=False
+               )
+               logger.info(f"Saved {stats['failed']} failed rows to {error_table}")
+       
+       return stats
+   ```
+
+---
+
+## Phase 5: Verification
+
+### Objectives
+- Verify data loaded correctly
+- Generate load report
+- Clean up staging data if needed
+
+### Actions
+
+1. **Verify load**
+   ```python
+   def verify_load(engine, table_name: str, expected_count: int) -> dict:
+       """Verify data was loaded correctly."""
+       
+       with engine.connect() as conn:
+           # Row count
+           result = conn.execute(text(f"SELECT COUNT(*) FROM {table_name}"))
+           actual_count = result.scalar()
+           
+           # Sample data
+           result = conn.execute(text(f"SELECT * FROM {table_name} LIMIT 5"))
+           sample = result.fetchall()
+       
+       verification = {
+           'expected': expected_count,
+           'actual': actual_count,
+           'match': expected_count == actual_count,
+           'sample_rows': len(sample)
+       }
+       
+       if verification['match']:
+           print(f"✅ Verification passed: {actual_count} rows loaded")
+       else:
+           print(f"❌ Verification failed: expected {expected_count}, got {actual_count}")
+       
+       return verification
+   
+   verify_load(engine, 'staging.customer_data', len(valid_df))
+   ```
+
+2. **Generate load report**
+   ```python
+   def generate_load_report(
+       source_file: str,
+       target_table: str,
+       stats: dict,
+       verification: dict
+   ) -> str:
+       """Generate markdown load report."""
+       
+       report = f"""
+   ## Data Load Report
+   
+   ### Summary
+   | Metric | Value |
+   |--------|-------|
+   | Source File | `{source_file}` |
+   | Target Table | `{target_table}` |
+   | Load Time | {stats.get('elapsed_seconds', 0):.2f}s |
+   | Status | {'✅ Success' if verification['match'] else '❌ Failed'} |
+   
+   ### Row Counts
+   | Stage | Count |
+   |-------|-------|
+   | Source Records | {stats.get('attempted', 0)} |
+   | Loaded | {stats.get('loaded', 0)} |
+   | Failed | {stats.get('failed', 0)} |
+   | Verified in DB | {verification.get('actual', 0)} |
+   
+   ### Performance
+   - **Throughput**: {stats.get('rows_per_second', 0):.0f} rows/second
+   
+   ### Errors
+   {f"- {len(stats.get('errors', []))} errors logged" if stats.get('errors') else "- No errors"}
+   """
+       return report
+   ```
+
+---
+
+## Complete Example
+
+```python
+"""Complete data loading pipeline - database agnostic."""
+
+from pathlib import Path
+import pandas as pd
+from sqlalchemy import create_engine, text
+from loguru import logger
+
+# Configuration
+CONFIG = {
+    'source_file': 'data/customers.xlsx',
+    'target_table': 'staging.customers',
+    'db_type': 'sqlserver',  # or 'postgresql', 'mysql', 'sqlite'
+    'db_config': {
+        'server': 'localhost',
+        'database': 'mydb'
+    },
+    'load_mode': 'replace',  # 'replace', 'append', 'fail'
+    'validation_rules': {
+        'required': ['customer_id', 'name'],
+        'date_columns': ['created_date']
+    }
+}
+
+def main():
+    # Phase 1: Source Discovery
+    logger.info(f"Loading source: {CONFIG['source_file']}")
+    df = load_source_file(Path(CONFIG['source_file']))
+    logger.info(f"Found {len(df)} records, {len(df.columns)} columns")
+    
+    # Phase 2: Target Configuration  
+    engine = get_db_engine(CONFIG['db_type'], CONFIG['db_config'])
+    schema = infer_sql_types(df)
+    prepare_target_table(
+        engine, 
+        CONFIG['target_table'], 
+        schema, 
+        CONFIG['load_mode'],
+        CONFIG['db_type']
+    )
+    
+    # Phase 3: Transform
+    df = clean_column_names(df)
+    df = clean_data(df, CONFIG.get('validation_rules', {}))
+    valid_df, invalid_df = validate_data(df, CONFIG.get('validation_rules', {}))
+    
+    # Phase 4: Load
+    stats = load_with_error_handling(
+        valid_df, 
+        engine, 
+        CONFIG['target_table'],
+        error_table='staging.load_errors'
+    )
+    
+    # Phase 5: Verify
+    verification = verify_load(engine, CONFIG['target_table'], len(valid_df))
+    
+    # Generate report
+    report = generate_load_report(
+        CONFIG['source_file'],
+        CONFIG['target_table'],
+        stats,
+        verification
+    )
+    logger.info(report)
+    
+    return stats
+
+if __name__ == '__main__':
+    main()
+```
+
+---
+
+## Dependencies
+
+```txt
+# requirements.txt additions for data loading
+pandas>=2.0.0
+openpyxl>=3.1.0      # Excel support
+xlrd>=2.0.0          # Legacy Excel (.xls)
+sqlalchemy>=2.0.0    # Database abstraction
+pyodbc>=4.0.0        # SQL Server
+psycopg2-binary>=2.9.0  # PostgreSQL (optional)
+pymysql>=1.0.0       # MySQL (optional)
+pyarrow>=12.0.0      # Parquet support (optional)
+loguru>=0.7.0        # Logging
+```
+
+---
+
+## Related Resources
+
+- `@sql-expert` - Database design and query optimization
+- `@data-engineer` - ETL pipeline design and orchestration
+- `/data-analysis` - Analyze loaded data
+- `python.instructions.md` - Python coding standards