@ca-plant-list/ca-plant-list 0.4.14 → 0.4.16

package/data/inattaxonphotos.csv

@@ -736,6 +736,9 @@ Blepharizonia plumosa,89389624,jpg,cc-by-nc,Chloe Novak
 Boechera breweri subsp. breweri,854971,jpg,cc-by-nc,Robert
 Bolboschoenus fluviatilis,5421230,jpg,cc-by-nc,sarahaj
 Bolboschoenus maritimus subsp. paludosus,132800260,jpeg,cc-by-nc,Peter Zika
+Bolboschoenus maritimus subsp. paludosus,132800264,jpeg,cc-by-nc,Peter Zika
+Bolboschoenus maritimus subsp. paludosus,448262257,jpg,cc-by-nc,Fred Melgert / Carla Hoegen
+Bolboschoenus maritimus subsp. paludosus,448262847,jpg,cc-by-nc,Fred Melgert / Carla Hoegen
 Bolboschoenus robustus,79020136,jpeg,cc-by-nc,Sarah Towne
 Bowlesia incana,1678991,JPG,cc-by-nc,Carolyn Gritzmaker
 Bowlesia incana,128744293,jpg,cc-by,Zihao Wang
@@ -964,6 +967,8 @@ Calystegia sepium subsp. limnophila,5091992,jpg,cc-by,Ken-ichi Ueda
 Calystegia sepium subsp. limnophila,38875324,jpeg,cc-by,Lauren McLaurin
 Calystegia silvatica subsp. disjuncta,2839177,jpg,cc0,Peter de Lange
 Calystegia silvatica subsp. disjuncta,2839178,jpg,cc0,Peter de Lange
+Calystegia silvatica subsp. disjuncta,132744682,jpeg,cc-by-nc,lflovesnature
+Calystegia silvatica subsp. disjuncta,132744715,jpeg,cc-by-nc,lflovesnature
 Calystegia soldanella,106263751,jpg,cc-by-nc,Dani Montijo
 Calystegia soldanella,16180949,jpeg,cc-by,Arnim Littek
 Calystegia soldanella,62295020,jpeg,cc0,葉子
@@ -1036,6 +1041,7 @@ Carex barbarae,16259864,jpeg,cc-by,Millie Basden
 Carex barbarae,76197561,jpg,cc-by-nc,jrmorris
 Carex barbarae,9536063,jpeg,cc-by-nc,James Bailey
 Carex brevicaulis,13079255,jpeg,cc-by-nc,Robert Pergl
+Carex brevicaulis,336177289,jpeg,cc-by,Flavien Saboureau
 Carex comosa,2097792,jpg,cc-by-nc,Susan Elliott
 Carex comosa,2097794,jpg,cc-by-nc,Susan Elliott
 Carex densa,70367090,jpeg,cc-by-nc,James Miskelly
@@ -1598,6 +1604,7 @@ Cryptantha corollata,6694854,jpg,cc-by-nc,Steve Jones
 Cryptantha corollata,6694853,jpg,cc-by-nc,Steve Jones
 Cryptantha flaccida,103049,jpg,cc-by,dloarie
 Cryptantha intermedia var. intermedia,17323919,jpg,cc-by-nc,BJ Stacey
+Cryptantha intermedia var. intermedia,5699495,jpg,cc-by-nc,Chris Evers
 Cryptantha juniperensis,378730932,jpg,cc-by-nc,madge
 Cryptantha juniperensis,378730814,jpg,cc-by-nc,madge
 Cryptantha juniperensis,38799107,jpeg,cc-by-nc,Conor and Alexandra
@@ -1680,6 +1687,9 @@ Cyperus involucratus,175703429,jpeg,cc-by,Licheng Shih
 Cyperus involucratus,181908056,jpeg,cc-by-nc,Chris Close
 Cyperus involucratus,7928186,jpg,cc-by-nc,LSchare (she/her)
 Cyperus involucratus,55787221,jpeg,cc-by,agujaceratops
+Cyperus niger,89856671,jpg,cc-by-nc,jrebman
+Cyperus niger,161421212,jpeg,cc-by,Ken-ichi Ueda
+Cyperus niger,237485592,jpeg,cc-by,Ken-ichi Ueda
 Cyperus odoratus,24788159,jpeg,cc-by,Zihao Wang
 Cyperus odoratus,25385210,jpg,cc-by-nc,Dan Johnson
 Cyperus strigosus,321391275,jpeg,cc-by,Michael J. Papay
@@ -1752,6 +1762,7 @@ Delphinium californicum subsp. californicum,42625517,jpeg,cc-by-nc,kalibardo
 Delphinium californicum subsp. californicum,42625528,jpeg,cc-by-nc,kalibardo
 Delphinium californicum subsp. californicum,745389,jpg,cc-by-nc,Eric Wrubel
 Delphinium californicum subsp. interius,4087,jpg,cc-by,Ken-ichi Ueda
+Delphinium californicum subsp. interius,129448412,jpg,cc-by-nc,kevinsherrill
 Delphinium glaucum,37397608,jpg,cc-by-nc,Guy Lemelin
 Delphinium glaucum,3738355,jpg,cc-by,Andrey Zharkikh
 Delphinium gypsophilum,15118,jpg,cc-by,marlin harms
@@ -2247,6 +2258,8 @@ Eriophyllum confertiflorum var. confertiflorum,17035891,jpg,cc-by-nc,Fred Melger
 Eriophyllum confertiflorum var. confertiflorum,42156614,jpg,cc-by-nc,docprt
 Eriophyllum jepsonii,35246132,jpg,cc-by-nc,Christian Schwarz
 Eriophyllum jepsonii,64529857,jpg,cc-by-nc,Chloe and Trevor Van Loon
+Eriophyllum lanatum var. achilleoides,375544135,jpg,cc-by-nc,Karlyn H. Lewis
+Eriophyllum lanatum var. achilleoides,62642791,png,cc-by-nc,James Gonsman
 Eriophyllum staechadifolium,171909656,jpg,cc-by,DeeF
 Eriophyllum staechadifolium,2266969,JPG,cc-by,Don Loarie
 Eriophyllum staechadifolium,8009436,jpg,cc-by-nc,Bill Miller
@@ -2350,6 +2363,7 @@ Erythranthe microphylla,121654136,jpg,cc-by-nc,alivea009
 Erythranthe microphylla,127754761,jpeg,cc-by-nc,Dan Tucker
 Erythranthe microphylla,6708076,jpeg,cc-by-nc,Andrew Simon
 Erythranthe microphylla,268075917,jpg,cc-by-nc,Dean Lyons
+Erythranthe microphylla,373764496,jpg,cc-by-nc,Ocean Fleskes
 Erythranthe moschata,301068789,jpg,cc-by-nc,nathantay
 Erythranthe moschata,305753498,jpg,cc-by-nc,Ocean Fleskes
 Erythranthe moschata,948210,jpg,cc-by-nc,Susan
@@ -3070,6 +3084,9 @@ Juncus xiphioides,9806786,jpg,cc-by-nc,Sarah Wilson
 Juniperus californica,185052,jpg,cc-by,Ken-ichi Ueda
 Juniperus californica,20654,jpg,cc-by,Ken-ichi Ueda
 Juniperus californica,528925,jpg,cc-by-nc,Tom Scott
+Juniperus communis var. saxatilis,62016689,jpg,cc-by-nc,Boris Bolshakov
+Juniperus communis var. saxatilis,142708159,jpeg,cc-by-nc,Alexander Rumpel
+Juniperus communis var. saxatilis,108219672,jpg,cc-by-nc,Felipe Castilla Lattke
 Keckiella breviflora var. breviflora,160934765,jpg,cc-by,Steve Matson
 Keckiella breviflora var. breviflora,160934761,jpg,cc-by,Steve Matson
 Keckiella corymbosa,149319402,jpeg,cc-by-nc,Jason Cantley
@@ -3242,6 +3259,7 @@ Lepidium dictyotum,272680,jpg,cc-by-nc,2009 Zoya Akulova
 Lepidium didymum,175706599,jpeg,cc-by-nc,Aleksandr_Levon
 Lepidium didymum,8011861,jpg,cc0,Jesse Rorabaugh
 Lepidium didymum,114049269,jpeg,cc-by-nc,博甫
+Lepidium didymum,207927754,jpg,cc-by-nc,Chuangzao
 Lepidium draba,17017121,jpg,cc-by,Conrad Altmann
 Lepidium draba,127389190,jpg,cc-by-nc,africaspotter
 Lepidium draba,34927501,jpg,cc-by-nc,Kayla Echols
@@ -4286,6 +4304,10 @@ Phoradendron leucarpum subsp. macrophyllum,248523345,jpeg,cc-by-nc,James Bailey
 Phoradendron leucarpum subsp. macrophyllum,34637175,jpg,cc-by-nc,jimpark67
 Phoradendron leucarpum subsp. macrophyllum,51724554,jpg,cc-by-nc,ellen hildebrandt
 Phoradendron leucarpum subsp. tomentosum,37764,jpg,cc-by,Franco Folini
+Phoradendron leucarpum subsp. tomentosum,274597968,jpg,cc-by-nc,Ryan Brooks
+Phoradendron leucarpum subsp. tomentosum,175973152,jpeg,cc-by-nc,Anne Parsons
+Phoradendron leucarpum subsp. tomentosum,106352640,jpeg,cc-by-nc,Patricia
+Phoradendron leucarpum subsp. tomentosum,275717813,jpeg,cc-by,Cricket Raspet
 Phragmites australis,51566082,jpg,cc-by-nc,mimzee
 Phragmites australis,53131602,jpg,cc-by-nc,Sergey Mayorov
 Phragmites australis,57666377,jpeg,cc-by-nc,Roger Debenham
@@ -4760,6 +4782,8 @@ Quercus durata var. durata,22844206,jpg,cc-by,John Rusk
 Quercus garryana var. garryana,1765723,jpg,cc-by-nc,Di
 Quercus garryana var. garryana,132101933,jpg,cc-by,Biodiversity Heritage Library
 Quercus garryana var. garryana,132101934,jpg,cc-by,The Marmot
+Quercus garryana var. garryana,294381780,jpg,cc-by-nc,JoeJoe Clark
+Quercus garryana var. garryana,428986606,jpeg,cc-by-nc,Mart Hughes
 Quercus ilex,52702145,jpg,cc-by-nc,Muriel Bendel
 Quercus ilex,165811504,jpeg,cc-by-nc,juristi
 Quercus ilex,243199963,jpeg,cc-by-nc,Platon Kleanthidis
@@ -4834,6 +4858,7 @@ Ranunculus sceleratus,146317741,jpg,cc-by-nc,Vladimir Bryukhov
 Ranunculus sceleratus,31618021,jpg,cc-by-nc,Марина Горбунова-Ëлкина
 Ranunculus sceleratus,17360630,jpeg,cc-by-nc,Nathan Taylor
 Ranunculus sceleratus,74753531,jpeg,cc-by,Nina Filippova
+Ranunculus sceleratus var. sceleratus,3155996,JPG,cc-by-nc,Bob O'Kennon
 Raphanus raphanistrum,381509992,jpg,cc-by-nc,califorag3r
 Raphanus raphanistrum,79344995,jpeg,cc-by-nc,Nadezhda Nayanova
 Raphanus raphanistrum,284199344,jpg,cc-by-nc,chedar
@@ -5483,6 +5508,8 @@ Spergula arvensis,5060236,jpg,cc-by-nc,Simon Nicholas
 Spergularia bocconi,24556284,jpeg,cc-by-nc,James Bailey
 Spergularia bocconi,112060330,jpeg,cc-by-nc,James Bailey
 Spergularia bocconi,34753827,jpg,cc-by-nc,sue_meiman
+Spergularia macrotheca var. leucantha,270639696,jpg,cc-by-nc,Bonnie Nickel
+Spergularia macrotheca var. leucantha,270639736,jpg,cc-by-nc,Bonnie Nickel
 Spergularia macrotheca var. longistyla,183054472,jpg,cc-by-nc,jpgalvan
 Spergularia macrotheca var. longistyla,187421118,jpg,cc-by-nc,chrisdan
 Spergularia macrotheca var. longistyla,186674278,jpg,cc0,Scott Yarger

package/data/taxa.csv

@@ -1144,7 +1144,7 @@ Maianthemum racemosum,false Solomon's seal,N,32495,10096,51062,Large False Solom
 Maianthemum stellatum,,N,32497,9629,53268,False Solomon Seal
 Malacothamnus arcuatus var. elmeri,,N,108345,14681,1497404,Eastern Bewildering Bushmallow,perennial,pink,4,5,1065,1B.2,,,S2,G2
 Malacothamnus fremontii var. fremontii,long-haired unfurled bushmallow,N,108341,14689,70398,,perennial,pink,5,6
-Malacothamnus hallii,,N,108345,14681,1497404,,,,,,1065,1B.2,,,S2,G2
+Malacothamnus hallii,Hall's bushmallow,N,108345,14681,1497404,,perennial,pink,4,5,1065,1B.2,,,S2,G2
 Malacothrix californica,,N,4059,5325,58026,California Desertdandelion
 Malacothrix clevelandii,Cleveland's malacothrix,N,4060,5326,58841,Cleveland's Desertdandelion
 Malacothrix coulteri,snake's-head,N,4061,5327,58027,Snake's Head
@@ -1331,10 +1331,10 @@ Persicaria punctata,,N,37303,11014,78456,Water Smartweed
 Petasites frigidus var. palmatus,coltsfoot,N,8060,6269,55778,Arctic Sweet Coltsfoot
 Petrorhagia dubia,pink grass,X,37370,6275,60602
 Petunia parviflora,wild petunia,N,37378,6279,159650,Seaside Petunia
-Phacelia breweri,,N,37425,6292,68813,Brewer's Phacelia,,blue,3,6
-Phacelia californica,rock phacelia,N,37426,6293,53170,Rock Phacelia
-Phacelia ciliata,great valley phacelia,N,37432,6302,58180,Great Valley Phacelia
-Phacelia distans,"sordid phacelia,distant phacelia",N,37450,6318,56631,Wild Heliotrope,,"white,blue",3,5
+Phacelia breweri,Brewer's phacelia,N,37425,6292,68813,Brewer's Phacelia,annual,blue,3,6
+Phacelia californica,rock phacelia,N,37426,6293,53170,Rock Phacelia,perennial,blue,3,9
+Phacelia ciliata,great valley phacelia,N,37432,6302,58180,Great Valley Phacelia,annual,blue,3,6
+Phacelia distans,"sordid phacelia,distant phacelia",N,37450,6318,56631,Wild Heliotrope,annual,"white,blue",3,5
 Phacelia divaricata,,N,37451,6319,51093,Divaricate Phacelia
 Phacelia douglasii,,N,37452,6320,58182,Douglas' Phacelia
 Phacelia egena,,N,37455,6322,58183,Kaweah River Phacelia

package/data/text/Eriastrum-ertterae.footer.md

@@ -0,0 +1,6 @@
+## Resources
+
+-   Gowen, David. “[TWO NEW SPECIES OF ERIASTRUM (POLEMONIACEAE) FROM CALIFORNIA.](http://www.jstor.org/stable/24621044)” Journal of the Botanical Research Institute of Texas, vol. 7, no. 1, 2013, pp. 21–24. JSTOR
+-   California Department of Fish and Wildlife (CDFW). 2023. [Report to the Fish and Game
+    Commission, status review of Lime Ridge eriastrum (_Eriastrum ertterae_)](https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=213638&inline). California Department
+    of Fish and Wildlife

package/data/text/Malacothamnus-arcuatus-var-elmeri.footer.md

@@ -0,0 +1,3 @@
+## Resources
+
+-   Morse, Keir (2023). [Malacothamnus Volume 3 - A Revised Treatment of the Genus Malacothamnus (Malvaceae) Based on Morphological and Phylogenetic Evidence](https://doi.org/10.6084/m9.figshare.23937066.v1). figshare. Book.

package/data/text/Malacothamnus-fremontii-var-fremontii.footer.md

@@ -0,0 +1,3 @@
+## Resources
+
+-   Morse, Keir (2023). [Malacothamnus Volume 3 - A Revised Treatment of the Genus Malacothamnus (Malvaceae) Based on Morphological and Phylogenetic Evidence](https://doi.org/10.6084/m9.figshare.23937066.v1). figshare. Book.

package/data/text/Malacothamnus-hallii.footer.md

@@ -0,0 +1,3 @@
+## Resources
+
+-   Morse, Keir (2023). [Malacothamnus Volume 3 - A Revised Treatment of the Genus Malacothamnus (Malvaceae) Based on Morphological and Phylogenetic Evidence](https://doi.org/10.6084/m9.figshare.23937066.v1). figshare. Book.

package/lib/csv.js

@@ -6,32 +6,6 @@ import { parse } from "csv-parse";
 import { stringify } from "csv-stringify/sync";
 
 class CSV {
-    /**
-     * @param {string} dir
-     * @param {string} fileName
-     */
-    static getMap(dir, fileName) {
-        /** @type {string[]} */
-        let headers = [];
-
-        /**
-         * @param {string[]} h
-         */
-        function setHeaders(h) {
-            headers = h;
-            return h;
-        }
-
-        const csv = this.parseFile(dir, fileName, setHeaders);
-        /** @type {Object<string,string[]>} */
-        const map = {};
-        for (const row of csv) {
-            map[row[headers[0]]] = row[headers[1]];
-        }
-
-        return map;
-    }
-
     /**
      * @param {string} fileName
      * @param {import("csv-parse").ColumnOption[]|boolean|function (string[]):string[]} columns
@@ -102,6 +76,7 @@ class CSV {
      * @param {string} fileName
      * @param {boolean|import("csv-parse").ColumnOption[]|function (string[]):string[]} [columns]
      * @param {string} [delimiter]
+     * @returns {Object<string,string>[]}
      */
     static readFile(fileName, columns = true, delimiter) {
         const content = fs.readFileSync(fileName);

package/lib/exceptions.js

@@ -2,7 +2,7 @@ import { Config } from "./config.js";
 import { Files } from "./files.js";
 
 class Exceptions {
-    /** @type {Object<string,Object<string,Object<string,{}>>>} */
+    /** @type {Object<string,Object<string,Object<string,string>>>} */
     #exceptions = {};
 
     /**
@@ -39,6 +39,7 @@ class Exceptions {
      * @param {string} cat
      * @param {string} subcat
      * @param {string} [defaultValue]
+     * @returns {string|undefined}
      */
     getValue(name, cat, subcat, defaultValue) {
         const taxonData = this.#exceptions[name];

package/lib/htmltaxon.js

@@ -1,3 +1,4 @@
+import { Config } from "./config.js";
 import { DateUtils } from "./dateutils.js";
 import { HTML } from "./html.js";
 import { Markdown } from "./markdown.js";
@@ -127,6 +128,19 @@ class HTMLTaxon {
             : HTML.wrap("div", parts.join(""), { class: classNames });
     }
 
+    /**
+     * @param {Taxon} taxon
+     * @returns {string}
+     */
+    static getFooterHTML(taxon) {
+        const footerTextPath =
+            Config.getPackageDir() +
+            "/data/text/" +
+            taxon.getBaseFileName() +
+            ".footer.md";
+        return HTMLTaxon.getMarkdownSection(footerTextPath);
+    }
+
     /**
      * @param {Taxon} taxon
      */

package/lib/index.d.ts

@@ -59,6 +59,7 @@ export class HTML {
 }
 
 export class HTMLTaxon {
+    static getFooterHTML(taxon: Taxon): string;
     static getListSectionHTML(
         list: string[],
         header: string,

package/lib/program.js

@@ -1,6 +1,7 @@
 import { Command } from "commander";
 import { Files } from "./files.js";
 import { CSV } from "./csv.js";
+import path from "node:path";
 
 class Program {
     /**
@@ -14,7 +15,10 @@ class Program {
             console.log(includeFilePath + " not found; loading all taxa");
             return true;
         }
-        const includeCSV = CSV.parseFile(dataDir, includeFileName);
+
+        /** @type {TaxonData[]} */
+        // @ts-ignore
+        const includeCSV = CSV.readFile(path.join(dataDir, includeFileName));
         /** @type {Object<string,TaxonData>} */
         const include = {};
         for (const row of includeCSV) {
@@ -29,16 +33,16 @@ class Program {
             .option(
                 "-d, --datadir <dir>",
                 "The directory containing plant data.",
-                "./data"
+                "./data",
             )
             .option(
                 "-f, --show-flower-errors",
-                "Include missing flower color/flowering time in the error log when loading taxa."
+                "Include missing flower color/flowering time in the error log when loading taxa.",
             )
             .option(
                 "-o, --outputdir <dir>",
                 "The directory to which output should be written.",
-                "./output"
+                "./output",
             );
         return program;
     }

package/lib/taxa.js

@@ -9,6 +9,8 @@ import { Families } from "./families.js";
 import { FlowerColor } from "./flowercolor.js";
 import { InatPhoto } from "./inat_photo.js";
 import { TaxaCSV } from "./tools/taxacsv.js";
+import { ErrorLog } from "./errorlog.js";
+import { Program } from "./program.js";
 
 const FLOWER_COLORS = [
     { name: "white", color: "white" },
@@ -95,6 +97,8 @@ class Taxa {
             this.#loadInatPhotos(dataDir);
         }
 
+        /** @type {SynonymData[]} */
+        // @ts-ignore
         const synCSV = CSV.parseFile(dataDir, "synonyms.csv");
         this.#loadSyns(synCSV, inclusionList);
         this.#loadSyns(extraSynonyms, inclusionList);
@@ -102,29 +106,57 @@ class Taxa {
 
     /**
      * @param {string} dataDir
+     * @param {string} filename
      */
-    #loadInatPhotos(dataDir) {
-        const photosFileName = "inattaxonphotos.csv";
-        if (fs.existsSync(path.join(dataDir, photosFileName))) {
-            /** @type {InatCsvPhoto[]} */
-            const csvPhotos = CSV.parseFile(dataDir, photosFileName);
-            for (const csvPhoto of csvPhotos) {
-                const taxon = this.getTaxon(csvPhoto.name);
-                if (!taxon) {
-                    continue;
-                }
-                taxon.addPhoto(
-                    new InatPhoto(
-                        csvPhoto.id,
-                        csvPhoto.ext,
-                        csvPhoto.licenseCode,
-                        csvPhoto.attrName,
-                    ),
-                );
+    #loadPhotosFromFile(dataDir, filename) {
+        if (!fs.existsSync(path.join(dataDir, filename))) return;
+        /** @type {InatCsvPhoto[]} */
+        const csvPhotos = CSV.parseFile(dataDir, filename).map((row) => {
+            /** @type {InatLicenseCode} */
+            let licenseCode = "cc-by";
+            if (row.licenseCode === "cc-by-nc-sa") licenseCode = "cc-by-nc-sa";
+            else if (row.licenseCode === "cc-by-nc") licenseCode = "cc-by-nc";
+            else if (row.licenseCode === "cc-by-nc-nd")
+                licenseCode = "cc-by-nc-nd";
+            else if (row.licenseCode === "cc-by") licenseCode = "cc-by";
+            else if (row.licenseCode === "cc-by-sa") licenseCode = "cc-by-sa";
+            else if (row.licenseCode === "cc-by-nd") licenseCode = "cc-by-nd";
+            else if (row.licenseCode === "pd") licenseCode = "pd";
+            else if (row.licenseCode === "gdfl") licenseCode = "gdfl";
+            else if (row.licenseCode === "cc0") licenseCode = "cc0";
+            return {
+                attrName: row.attrName,
+                ext: row.ext,
+                id: Number(row.id),
+                licenseCode,
+                name: row.name,
+            };
+        });
+        for (const csvPhoto of csvPhotos) {
+            const taxon = this.getTaxon(csvPhoto.name);
+            if (!taxon) {
+                continue;
             }
+            taxon.addPhoto(
+                new InatPhoto(
+                    csvPhoto.id,
+                    csvPhoto.ext,
+                    csvPhoto.licenseCode,
+                    csvPhoto.attrName,
+                ),
+            );
         }
     }
 
+    /**
+     * @param {string} dataDir
+     */
+    #loadInatPhotos(dataDir) {
+        this.#loadPhotosFromFile("./data", "inatphotos.csv");
+        this.#loadPhotosFromFile(dataDir, "inattaxonphotos.csv");
+        this.#loadPhotosFromFile(dataDir, "inatobsphotos.csv");
+    }
+
     getFamilies() {
         return this.#families;
     }
@@ -161,6 +193,31 @@ class Taxa {
         return this.#isSubset;
     }
 
+    /**
+     * @param {import("commander").OptionValues} options
+     */
+    static async loadTaxa(options) {
+        const errorLog = new ErrorLog(options.outputdir + "/errors.tsv", false);
+
+        const loaderPath = "./js/taxaloader.js";
+        let taxa;
+        if (fs.existsSync(loaderPath)) {
+            const taxaLoaderClass = await import(
+                "file:" + path.resolve(loaderPath)
+            );
+            taxa = await taxaLoaderClass.TaxaLoader.loadTaxa(options, errorLog);
+        } else {
+            taxa = new Taxa(
+                Program.getIncludeList(options.datadir),
+                errorLog,
+                options.showFlowerErrors,
+            );
+        }
+
+        errorLog.write();
+        return taxa;
+    }
+
     /**
      * @param {SynonymData[]} synCSV
      * @param {Object<string,TaxonData>|boolean} inclusionList
@@ -194,7 +251,7 @@ class Taxa {
         for (const row of taxaCSV) {
             const name = row["taxon_name"];
 
-            /** @type {TaxonData|{status?:string}} */
+            /** @type {TaxonData|{status?:StatusCode}} */
             let taxon_overrides = {};
             if (inclusionList !== true) {
                 taxon_overrides = inclusionList[name];

package/lib/taxon.js

@@ -243,6 +243,9 @@ class Taxon {
         return name.replace(/ (subsp|var)\./, "").replace("×", "× ");
     }
 
+    /**
+     * @returns {string|undefined}
+     */
     getINatSyn() {
         return this.#iNatSyn;
     }
@@ -308,13 +311,16 @@ class Taxon {
         return link;
     }
 
+    /**
+     * @returns {StatusCode}
+     */
     getStatus() {
         return this.#status;
     }
 
     /**
-     * @param {*} config
-     * @returns
+     * @param {Config} config
+     * @returns {string}
      */
     getStatusDescription(config) {
         switch (this.#status) {

package/lib/tools/calflora.js

@@ -9,6 +9,7 @@ const CALFLORA_URL_COUNTY =
 
 /**
  * @typedef {{
+ * Taxon:string,
  * "Native Status":string,
  * TJMTID:string
  * "Active in Calflora?":string
@@ -59,9 +60,13 @@ class Calflora {
             calfloraDataFileNameCounties,
         );
 
+        /** @type {CalfloraData[]} */
+        // @ts-ignore
         const csvActive = CSV.readFile(
             path.join(toolsDataPath, calfloraDataFileNameActive),
         );
+        /** @type {CalfloraData[]} */
+        // @ts-ignore
         const csvCounties = CSV.readFile(
             path.join(toolsDataPath, calfloraDataFileNameCounties),
         );