@c4a/server-cli 0.4.15-alpha.6 → 0.4.15-alpha.8

package/index.js

@@ -220991,6 +220991,12 @@ class LlmServiceImpl {
       if (options?.systemPrompt) {
         callSettings.system = options.systemPrompt;
       }
+      if (options?.jsonMode) {
+        callSettings.providerOptions = {
+          openai: { responseFormat: { type: "json_object" } },
+          anthropic: { responseFormat: { type: "json_object" } }
+        };
+      }
       const result = await retry(() => generateText(callSettings), {
         shouldRetry: (error40) => isRetryableStatus(getHttpStatus(error40)) || isTimeoutError2(error40)
       });
@@ -221038,6 +221044,12 @@ class LlmServiceImpl {
       if (options?.systemPrompt) {
         callSettings.system = options.systemPrompt;
       }
+      if (options?.jsonMode) {
+        callSettings.providerOptions = {
+          openai: { responseFormat: { type: "json_object" } },
+          anthropic: { responseFormat: { type: "json_object" } }
+        };
+      }
       const result = await retry(() => Promise.resolve(streamText(callSettings)), {
         shouldRetry: (error40) => isRetryableStatus(getHttpStatus(error40)) || isTimeoutError2(error40)
       });
@@ -221856,6 +221868,7 @@ function parseExtractionOutput(raw, schema) {
     }
     parsed = normalizeFlatOutput(parsed);
     parsed = stripNulls(parsed);
+    parsed = patchAttributeDefaults(parsed);
     const result = schema.safeParse(parsed);
     if (!result.success) {
       return { success: false, error: result.error };
@@ -221923,7 +221936,37 @@ function tryParseJson(raw) {
   return repairAndParse(raw);
 }
 function repairAndParse(raw) {
-  return JSON.parse(jsonrepair(raw));
+  try {
+    return JSON.parse(jsonrepair(raw));
+  } catch {
+    const truncated = truncateToLastCompleteEntry(raw);
+    if (truncated) {
+      return JSON.parse(jsonrepair(truncated));
+    }
+    throw new Error(`JSON repair failed for output of length ${raw.length}`);
+  }
+}
+function truncateToLastCompleteEntry(raw) {
+  let text2 = raw.trim();
+  if (text2.startsWith("```")) {
+    const firstNewline = text2.indexOf(`
+`);
+    text2 = text2.slice(firstNewline + 1);
+  }
+  if (text2.endsWith("```")) {
+    text2 = text2.slice(0, -3);
+  }
+  const pattern = /\}\s*,\s*"P\d+"/g;
+  let lastMatch = null;
+  let m;
+  while ((m = pattern.exec(text2)) !== null) {
+    lastMatch = m;
+  }
+  if (!lastMatch)
+    return null;
+  const cutPos = lastMatch.index + 1;
+  const truncated = text2.slice(0, cutPos) + "}";
+  return truncated;
 }
 var PARAGRAPH_TAG_RE = /^P\d+$/;
 function normalizeFlatOutput(parsed) {
@@ -221956,6 +221999,43 @@ function stripNulls(value) {
   }
   return value;
 }
+function patchAttributeDefaults(value) {
+  if (!value || typeof value !== "object" || Array.isArray(value))
+    return value;
+  const obj = value;
+  if ("paragraphs" in obj && Array.isArray(obj.paragraphs)) {
+    return {
+      ...obj,
+      paragraphs: obj.paragraphs.map((p) => {
+        if (!p || typeof p !== "object")
+          return p;
+        const para = p;
+        const atoms2 = para.atoms;
+        if (!atoms2 || typeof atoms2 !== "object")
+          return p;
+        return { ...para, atoms: patchAttrsInAtoms(atoms2) };
+      })
+    };
+  }
+  return value;
+}
+function patchAttrsInAtoms(atoms2) {
+  const attrs = atoms2.attributes;
+  if (!Array.isArray(attrs))
+    return atoms2;
+  return {
+    ...atoms2,
+    attributes: attrs.map((attr) => {
+      if (!attr || typeof attr !== "object" || Array.isArray(attr))
+        return attr;
+      const a = attr;
+      if (typeof a.type !== "string" || a.type === "") {
+        return { ...a, type: "other" };
+      }
+      return attr;
+    })
+  };
+}
 function isRecord(value) {
   return !!value && typeof value === "object" && "key" in value && "value" in value && typeof value.key === "string";
 }
@@ -222268,6 +222348,7 @@ Return a single JSON object keyed by paragraph tags. Only include paragraphs tha
 - **Enum fields MUST use ONLY the listed values.** For example, entity.kind must be one of "implementation"|"external"|"concept" — do NOT use values from other atom types (e.g., do NOT put "team" or "human" in entity.kind; those belong to roles.kind).
 - Every atom MUST include a "confidence" field (0.0-1.0) indicating how confident you are in the extraction. Use higher values (0.85-1.0) for explicitly stated facts and lower values (0.5-0.7) for inferred or ambiguous information.
 - **Classify correctly:** People, teams, and personas → "roles" (not "entities"). Technical systems, services, modules → "entities".
+- **Entity naming — extract the subject, not the document:** Entity names should represent the actual system/product/framework being described, not the document itself. If the text says "Next.js is a React framework", the entity is "Next.js" — not "Next.js 官方文档" or "Next.js API 参考". Use names that work as standalone knowledge graph nodes, independent of any document context.
 - **Entity reference consistency (CRITICAL):** Every entity name referenced in relation.from, relation.to, behavior.subject, or any other cross-reference field MUST also appear in the "entities" array of the SAME paragraph (or a preceding paragraph in the same chunk). If an entity is mentioned for the first time in a relation, you MUST also extract it as an entity. This ensures no "dangling references" — every name used in relations has a corresponding entity declaration.
 - **Cross-atom reference consistency:** transitions[].from and transitions[].to values MUST exist in states[].values of the same entity. roles[].performs values MUST match names declared in behaviors[].name.
 - **Constraints vs rules distinction:** Use "constraints" for unconditional declarative mandates ('X must Y'). Use "rules" for conditional logic ('IF X THEN Y'). Do not mix them — a requirement with no condition is a constraint, a requirement triggered by a condition is a rule. Do NOT invent a rule for every constraint — only create a rule when the text explicitly states conditional logic.
@@ -222327,13 +222408,14 @@ var ENTITY_RESOLUTION_SYSTEM_PROMPT = `You are an entity resolution assistant. Y
 - Prefer the LONGER, more descriptive name as the canonical name
 - Do NOT merge names that share a substring but refer to different things
 - When uncertain, do NOT merge — add to "ambiguous" instead
-- Chinese and English names for the same entity SHOULD be merged (e.g. "Vmok" → "Vmok 微模块框架")
-- Abbreviations should be merged with their full forms (e.g. "AGW" → "API Gateway")
+- Chinese and English names for the same entity SHOULD be merged (e.g. "Webpack" → "Webpack 打包工具")
+- Abbreviations should be merged with their full forms (e.g. "K8s" → "Kubernetes")
+- Document-descriptive names (containing "文档", "参考", "指南" etc.) should be merged to the actual product/system name. The entity is the product, not the document about it
 
 ## Task 2: Remove Noise
 - Apply the **identity test**: a real entity is something you can discuss independently ("What is X?", "How does X work?", "Who owns X?"). Names that fail this test — values, addresses, actions, generic descriptions — are noise.
 - Remove names that are NOT meaningful named entities: generic words, action descriptions, or things that are attributes/values rather than independent subjects
-- Examples of REAL entities to KEEP: product names (TTAstra, Gulux), tools (nvm, Rush), services (Op Main 服务), platforms (AGW 平台) — these all pass the identity test
+- Examples of REAL entities to KEEP: product names (Next.js, Vite), tools (nvm, Turborepo), services (Nginx, Redis), platforms (Kubernetes, Docker) — these all pass the identity test
 - When uncertain, KEEP the name — only remove if it clearly fails the identity test
 
 ## Output
@@ -222674,7 +222756,7 @@ Return ONLY a valid JSON object. No markdown fences, no explanation.`;
 }
 var DOC_DIAGRAM_ANNOTATION_SYSTEM_PROMPT = DIAGRAM_SYSTEM_PROMPT;
 // ../llm/src/chunking/markdownChunker.ts
-var DEFAULT_MAX_TOKENS2 = 4000;
+var DEFAULT_MAX_TOKENS2 = 3600;
 var DEFAULT_PARAGRAPH_MAX_TOKENS = 500;
 function estimateTokens(text2) {
   return Math.ceil(text2.length / 4);
@@ -222950,20 +223032,53 @@ function sectionHeadingLine(section) {
 function buildCoarseParagraphs(sections, paragraphMaxTokens) {
   const result = [];
   const rawEntries = [];
+  let pendingHeadings = [];
   for (let sIdx = 0;sIdx < sections.length; sIdx++) {
     const section = sections[sIdx];
-    if (!section.body.trim())
+    const headingLine = sectionHeadingLine(section);
+    if (!section.body.trim()) {
+      if (headingLine)
+        pendingHeadings.push(headingLine);
       continue;
-    const bodyTokens = estimateTokens(section.body);
-    if (bodyTokens > paragraphMaxTokens) {
+    }
+    const prefixParts = [...pendingHeadings];
+    if (headingLine)
+      prefixParts.push(headingLine);
+    pendingHeadings = [];
+    const prefix = prefixParts.length > 0 ? prefixParts.join(`
+
+`) : "";
+    const fullText = prefix ? prefix + `
+
+` + section.body : section.body;
+    const fullTokens = estimateTokens(fullText);
+    if (fullTokens > paragraphMaxTokens) {
       const parts = splitOversizedText(section.body, paragraphMaxTokens);
-      for (const part of parts) {
-        rawEntries.push({ sectionIndex: sIdx, text: part, tokens: estimateTokens(part) });
+      for (let i = 0;i < parts.length; i++) {
+        const partText = i === 0 && prefix ? prefix + `
+
+` + parts[i] : parts[i];
+        rawEntries.push({ sectionIndex: sIdx, text: partText, tokens: estimateTokens(partText) });
       }
     } else {
-      rawEntries.push({ sectionIndex: sIdx, text: section.body, tokens: bodyTokens });
+      rawEntries.push({ sectionIndex: sIdx, text: fullText, tokens: fullTokens });
     }
   }
+  if (pendingHeadings.length > 0 && rawEntries.length > 0) {
+    const last = rawEntries[rawEntries.length - 1];
+    const suffix = pendingHeadings.join(`
+
+`);
+    last.text = last.text + `
+
+` + suffix;
+    last.tokens = estimateTokens(last.text);
+  } else if (pendingHeadings.length > 0) {
+    const text2 = pendingHeadings.join(`
+
+`);
+    rawEntries.push({ sectionIndex: 0, text: text2, tokens: estimateTokens(text2) });
+  }
   const MERGE_THRESHOLD = 150;
   const merged = [];
   for (const entry of rawEntries) {

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@c4a/server-cli",
-  "version": "0.4.15-alpha.6",
+  "version": "0.4.15-alpha.8",
   "type": "module",
   "bin": {
     "c4a-server": "./index.js"

package/serve.js

@@ -194996,6 +194996,12 @@ class LlmServiceImpl {
       if (options?.systemPrompt) {
         callSettings.system = options.systemPrompt;
       }
+      if (options?.jsonMode) {
+        callSettings.providerOptions = {
+          openai: { responseFormat: { type: "json_object" } },
+          anthropic: { responseFormat: { type: "json_object" } }
+        };
+      }
       const result = await retry(() => generateText(callSettings), {
         shouldRetry: (error40) => isRetryableStatus(getHttpStatus(error40)) || isTimeoutError2(error40)
       });
@@ -195043,6 +195049,12 @@ class LlmServiceImpl {
       if (options?.systemPrompt) {
         callSettings.system = options.systemPrompt;
       }
+      if (options?.jsonMode) {
+        callSettings.providerOptions = {
+          openai: { responseFormat: { type: "json_object" } },
+          anthropic: { responseFormat: { type: "json_object" } }
+        };
+      }
       const result = await retry(() => Promise.resolve(streamText(callSettings)), {
         shouldRetry: (error40) => isRetryableStatus(getHttpStatus(error40)) || isTimeoutError2(error40)
       });
@@ -195861,6 +195873,7 @@ function parseExtractionOutput(raw5, schema2) {
     }
     parsed = normalizeFlatOutput(parsed);
     parsed = stripNulls(parsed);
+    parsed = patchAttributeDefaults(parsed);
     const result = schema2.safeParse(parsed);
     if (!result.success) {
       return { success: false, error: result.error };
@@ -195928,7 +195941,37 @@ function tryParseJson(raw5) {
   return repairAndParse(raw5);
 }
 function repairAndParse(raw5) {
-  return JSON.parse(jsonrepair(raw5));
+  try {
+    return JSON.parse(jsonrepair(raw5));
+  } catch {
+    const truncated = truncateToLastCompleteEntry(raw5);
+    if (truncated) {
+      return JSON.parse(jsonrepair(truncated));
+    }
+    throw new Error(`JSON repair failed for output of length ${raw5.length}`);
+  }
+}
+function truncateToLastCompleteEntry(raw5) {
+  let text2 = raw5.trim();
+  if (text2.startsWith("```")) {
+    const firstNewline = text2.indexOf(`
+`);
+    text2 = text2.slice(firstNewline + 1);
+  }
+  if (text2.endsWith("```")) {
+    text2 = text2.slice(0, -3);
+  }
+  const pattern = /\}\s*,\s*"P\d+"/g;
+  let lastMatch = null;
+  let m;
+  while ((m = pattern.exec(text2)) !== null) {
+    lastMatch = m;
+  }
+  if (!lastMatch)
+    return null;
+  const cutPos = lastMatch.index + 1;
+  const truncated = text2.slice(0, cutPos) + "}";
+  return truncated;
 }
 var PARAGRAPH_TAG_RE = /^P\d+$/;
 function normalizeFlatOutput(parsed) {
@@ -195961,6 +196004,43 @@ function stripNulls(value) {
   }
   return value;
 }
+function patchAttributeDefaults(value) {
+  if (!value || typeof value !== "object" || Array.isArray(value))
+    return value;
+  const obj = value;
+  if ("paragraphs" in obj && Array.isArray(obj.paragraphs)) {
+    return {
+      ...obj,
+      paragraphs: obj.paragraphs.map((p4) => {
+        if (!p4 || typeof p4 !== "object")
+          return p4;
+        const para = p4;
+        const atoms2 = para.atoms;
+        if (!atoms2 || typeof atoms2 !== "object")
+          return p4;
+        return { ...para, atoms: patchAttrsInAtoms(atoms2) };
+      })
+    };
+  }
+  return value;
+}
+function patchAttrsInAtoms(atoms2) {
+  const attrs = atoms2.attributes;
+  if (!Array.isArray(attrs))
+    return atoms2;
+  return {
+    ...atoms2,
+    attributes: attrs.map((attr) => {
+      if (!attr || typeof attr !== "object" || Array.isArray(attr))
+        return attr;
+      const a = attr;
+      if (typeof a.type !== "string" || a.type === "") {
+        return { ...a, type: "other" };
+      }
+      return attr;
+    })
+  };
+}
 function isRecord(value) {
   return !!value && typeof value === "object" && "key" in value && "value" in value && typeof value.key === "string";
 }
@@ -196273,6 +196353,7 @@ Return a single JSON object keyed by paragraph tags. Only include paragraphs tha
 - **Enum fields MUST use ONLY the listed values.** For example, entity.kind must be one of "implementation"|"external"|"concept" — do NOT use values from other atom types (e.g., do NOT put "team" or "human" in entity.kind; those belong to roles.kind).
 - Every atom MUST include a "confidence" field (0.0-1.0) indicating how confident you are in the extraction. Use higher values (0.85-1.0) for explicitly stated facts and lower values (0.5-0.7) for inferred or ambiguous information.
 - **Classify correctly:** People, teams, and personas → "roles" (not "entities"). Technical systems, services, modules → "entities".
+- **Entity naming — extract the subject, not the document:** Entity names should represent the actual system/product/framework being described, not the document itself. If the text says "Next.js is a React framework", the entity is "Next.js" — not "Next.js 官方文档" or "Next.js API 参考". Use names that work as standalone knowledge graph nodes, independent of any document context.
 - **Entity reference consistency (CRITICAL):** Every entity name referenced in relation.from, relation.to, behavior.subject, or any other cross-reference field MUST also appear in the "entities" array of the SAME paragraph (or a preceding paragraph in the same chunk). If an entity is mentioned for the first time in a relation, you MUST also extract it as an entity. This ensures no "dangling references" — every name used in relations has a corresponding entity declaration.
 - **Cross-atom reference consistency:** transitions[].from and transitions[].to values MUST exist in states[].values of the same entity. roles[].performs values MUST match names declared in behaviors[].name.
 - **Constraints vs rules distinction:** Use "constraints" for unconditional declarative mandates ('X must Y'). Use "rules" for conditional logic ('IF X THEN Y'). Do not mix them — a requirement with no condition is a constraint, a requirement triggered by a condition is a rule. Do NOT invent a rule for every constraint — only create a rule when the text explicitly states conditional logic.
@@ -196332,13 +196413,14 @@ var ENTITY_RESOLUTION_SYSTEM_PROMPT = `You are an entity resolution assistant. Y
 - Prefer the LONGER, more descriptive name as the canonical name
 - Do NOT merge names that share a substring but refer to different things
 - When uncertain, do NOT merge — add to "ambiguous" instead
-- Chinese and English names for the same entity SHOULD be merged (e.g. "Vmok" → "Vmok 微模块框架")
-- Abbreviations should be merged with their full forms (e.g. "AGW" → "API Gateway")
+- Chinese and English names for the same entity SHOULD be merged (e.g. "Webpack" → "Webpack 打包工具")
+- Abbreviations should be merged with their full forms (e.g. "K8s" → "Kubernetes")
+- Document-descriptive names (containing "文档", "参考", "指南" etc.) should be merged to the actual product/system name. The entity is the product, not the document about it
 
 ## Task 2: Remove Noise
 - Apply the **identity test**: a real entity is something you can discuss independently ("What is X?", "How does X work?", "Who owns X?"). Names that fail this test — values, addresses, actions, generic descriptions — are noise.
 - Remove names that are NOT meaningful named entities: generic words, action descriptions, or things that are attributes/values rather than independent subjects
-- Examples of REAL entities to KEEP: product names (TTAstra, Gulux), tools (nvm, Rush), services (Op Main 服务), platforms (AGW 平台) — these all pass the identity test
+- Examples of REAL entities to KEEP: product names (Next.js, Vite), tools (nvm, Turborepo), services (Nginx, Redis), platforms (Kubernetes, Docker) — these all pass the identity test
 - When uncertain, KEEP the name — only remove if it clearly fails the identity test
 
 ## Output
@@ -196679,7 +196761,7 @@ Return ONLY a valid JSON object. No markdown fences, no explanation.`;
 }
 var DOC_DIAGRAM_ANNOTATION_SYSTEM_PROMPT = DIAGRAM_SYSTEM_PROMPT;
 // ../llm/src/chunking/markdownChunker.ts
-var DEFAULT_MAX_TOKENS2 = 4000;
+var DEFAULT_MAX_TOKENS2 = 3600;
 var DEFAULT_PARAGRAPH_MAX_TOKENS = 500;
 function estimateTokens(text2) {
   return Math.ceil(text2.length / 4);
@@ -196955,20 +197037,53 @@ function sectionHeadingLine(section) {
 function buildCoarseParagraphs(sections, paragraphMaxTokens) {
   const result = [];
   const rawEntries = [];
+  let pendingHeadings = [];
   for (let sIdx = 0;sIdx < sections.length; sIdx++) {
     const section = sections[sIdx];
-    if (!section.body.trim())
+    const headingLine = sectionHeadingLine(section);
+    if (!section.body.trim()) {
+      if (headingLine)
+        pendingHeadings.push(headingLine);
       continue;
-    const bodyTokens = estimateTokens(section.body);
-    if (bodyTokens > paragraphMaxTokens) {
+    }
+    const prefixParts = [...pendingHeadings];
+    if (headingLine)
+      prefixParts.push(headingLine);
+    pendingHeadings = [];
+    const prefix = prefixParts.length > 0 ? prefixParts.join(`
+
+`) : "";
+    const fullText = prefix ? prefix + `
+
+` + section.body : section.body;
+    const fullTokens = estimateTokens(fullText);
+    if (fullTokens > paragraphMaxTokens) {
       const parts = splitOversizedText(section.body, paragraphMaxTokens);
-      for (const part of parts) {
-        rawEntries.push({ sectionIndex: sIdx, text: part, tokens: estimateTokens(part) });
+      for (let i = 0;i < parts.length; i++) {
+        const partText = i === 0 && prefix ? prefix + `
+
+` + parts[i] : parts[i];
+        rawEntries.push({ sectionIndex: sIdx, text: partText, tokens: estimateTokens(partText) });
       }
     } else {
-      rawEntries.push({ sectionIndex: sIdx, text: section.body, tokens: bodyTokens });
+      rawEntries.push({ sectionIndex: sIdx, text: fullText, tokens: fullTokens });
     }
   }
+  if (pendingHeadings.length > 0 && rawEntries.length > 0) {
+    const last = rawEntries[rawEntries.length - 1];
+    const suffix = pendingHeadings.join(`
+
+`);
+    last.text = last.text + `
+
+` + suffix;
+    last.tokens = estimateTokens(last.text);
+  } else if (pendingHeadings.length > 0) {
+    const text2 = pendingHeadings.join(`
+
+`);
+    rawEntries.push({ sectionIndex: 0, text: text2, tokens: estimateTokens(text2) });
+  }
   const MERGE_THRESHOLD = 150;
   const merged = [];
   for (const entry of rawEntries) {
@@ -197604,7 +197719,8 @@ async function extractTableAtoms(chunk, sections, result, llmService) {
   const prompt = buildDocTableAnnotationPrompt(tableText);
   try {
     const res = await llmService.generateText(prompt, {
-      systemPrompt: DOC_TABLE_ANNOTATION_SYSTEM_PROMPT
+      systemPrompt: DOC_TABLE_ANNOTATION_SYSTEM_PROMPT,
+      jsonMode: true
     });
     const parsed = parseExtractionOutput(res.text, docChunkResultSchema);
     if (!parsed.success) {
@@ -197696,7 +197812,8 @@ async function extractDiagramAtoms(chunk, sections, result, llmService) {
   const prompt = buildDocDiagramAnnotationPrompt(diagramText);
   try {
     const res = await llmService.generateText(prompt, {
-      systemPrompt: DOC_DIAGRAM_ANNOTATION_SYSTEM_PROMPT
+      systemPrompt: DOC_DIAGRAM_ANNOTATION_SYSTEM_PROMPT,
+      jsonMode: true
     });
     const parsed = parseExtractionOutput(res.text, docChunkResultSchema);
     if (!parsed.success) {
@@ -198214,7 +198331,9 @@ ${trimmed}
 Continue the JSON output from the exact point of truncation. Output ONLY the remaining JSON text.`;
   try {
     const result = await llmService.generateText(continuationPrompt, {
-      systemPrompt: DOC_ANNOTATION_SYSTEM_PROMPT
+      systemPrompt: DOC_ANNOTATION_SYSTEM_PROMPT,
+      jsonMode: true,
+      maxTokens: 16384
     });
     const combined = trimmed + result.text.trim();
     JSON.parse(jsonrepair(combined));
@@ -198256,9 +198375,12 @@ async function processChunk(chunk, chunkIndex, llmService, sections, onStep) {
   const chunkText = injectParagraphTags(chunk, sections);
   let llmCalls = 0;
   let totalTokens = 0;
+  const DOC_INDEX_MAX_OUTPUT_TOKENS = 16384;
   const t1Prompt = buildDocAtomAnnotationPrompt(chunkText);
   const t1Result = await llmService.generateText(t1Prompt, {
-    systemPrompt: DOC_ANNOTATION_SYSTEM_PROMPT
+    systemPrompt: DOC_ANNOTATION_SYSTEM_PROMPT,
+    jsonMode: true,
+    maxTokens: DOC_INDEX_MAX_OUTPUT_TOKENS
   });
   llmCalls++;
   totalTokens += t1Result.usage.totalTokens;
@@ -198268,8 +198390,17 @@ async function processChunk(chunk, chunkIndex, llmService, sections, onStep) {
   onStep?.("T1 done", llmCalls, totalTokens);
   let parseResult = parseExtractionOutput(continued.text, docChunkResultSchema);
   if (!parseResult.success) {
+    const rawLen = continued.text.length;
     const preview = continued.text.slice(0, 500).replace(/\n/g, "\\n");
-    console.warn(`[docIndexer] chunk ${chunkIndex} T1 strict parse failed, attempting lenient. ` + `Error: ${parseResult.error.message.slice(0, 200)}. ` + `LLM output preview: ${preview}`);
+    const errMsg = parseResult.error.message.slice(0, 300);
+    const posMatch = errMsg.match(/position\s+(\d+)/);
+    const errContext = posMatch ? continued.text.slice(Math.max(0, +posMatch[1] - 100), +posMatch[1] + 100).replace(/\n/g, "\\n") : "";
+    console.warn(`[docIndexer] chunk ${chunkIndex} T1 strict parse failed, attempting lenient.
+` + `  Error: ${errMsg}
+` + `  Output length: ${rawLen} chars | finishReason: ${t1Result.finishReason}
+` + `  Preview (first 500): ${preview}
+` + (errContext ? `  Context around error position: ...${errContext}...
+` : ""));
     const lenient = tryLenientParse(continued.text, chunkIndex);
     if (lenient) {
       parseResult = { success: true, data: lenient };
@@ -198288,7 +198419,8 @@ async function processChunk(chunk, chunkIndex, llmService, sections, onStep) {
     extract: async (input) => {
       const prompt = buildDocGleaningPrompt(input.chunkText, input.previousResult);
       const result = await llmService.generateText(prompt, {
-        systemPrompt: DOC_ANNOTATION_SYSTEM_PROMPT
+        systemPrompt: DOC_ANNOTATION_SYSTEM_PROMPT,
+        jsonMode: true
       });
       llmCalls++;
       totalTokens += result.usage.totalTokens;
@@ -198518,6 +198650,17 @@ function ensureAtomConfidence(atoms2) {
     }
   }
 }
+function sortAtomsByConfidence(sections) {
+  for (const section of sections) {
+    for (const para of section.paragraphs) {
+      for (const atomList of Object.values(para.atoms)) {
+        if (!Array.isArray(atomList) || atomList.length < 2)
+          continue;
+        atomList.sort((a, b) => (b.confidence ?? 0) - (a.confidence ?? 0));
+      }
+    }
+  }
+}
 function countAtoms(sections) {
   const counts = {};
   for (const section of sections.values()) {
@@ -198554,7 +198697,8 @@ async function runEntityResolution(sections, entityNames, llmService, onProgress
       ...noiseCandidates.length > 0 ? { noiseCandidates } : {}
     });
     const result = await llmService.generateText(prompt, {
-      systemPrompt: ENTITY_RESOLUTION_SYSTEM_PROMPT
+      systemPrompt: ENTITY_RESOLUTION_SYSTEM_PROMPT,
+      jsonMode: true
     });
     let resolution;
     try {
@@ -198679,7 +198823,13 @@ async function indexDocument(input) {
     const paragraphs = sortedParaKeys.map((pk) => {
       const p4 = section.paragraphs.get(pk);
       return { text: p4.text, atoms: p4.atoms };
+    }).filter((p4) => {
+      const hasAtoms = Object.values(p4.atoms).some((arr) => Array.isArray(arr) && arr.length > 0);
+      const hasText = p4.text.replace(/[\s\p{P}\p{S}]/gu, "").length > 0;
+      return hasAtoms || hasText;
     });
+    if (paragraphs.length === 0)
+      continue;
     digestSections.push({
       heading: section.heading,
       level: section.level,
@@ -198710,6 +198860,7 @@ async function indexDocument(input) {
     totalLlmCalls += resolutionResult.llmCalls;
     totalTokens += resolutionResult.totalTokens;
   }
+  sortAtomsByConfidence(digestSections);
   const atomCounts = countAtoms(sectionsMap);
   const paragraphCount = digestSections.reduce((sum, s) => sum + s.paragraphs.length, 0);
   if (paragraphCount === 0) {

package/web/assets/ContentDetail-BoQvQC7b.js

@@ -0,0 +1 @@
+import{c as o,u as m,a as c,j as e,b as d,C as h}from"./index-y0dn2kLO.js";const p=[["path",{d:"m12 19-7-7 7-7",key:"1l729n"}],["path",{d:"M19 12H5",key:"x3x0zl"}]],f=o("arrow-left",p);function j({icon:a,title:t,badges:s,meta:l}){const i=m(),{t:r}=c();return e.jsxs("div",{children:[e.jsxs("div",{className:"flex justify-between items-center",children:[e.jsxs("div",{className:"flex min-w-0 items-center gap-2",children:[e.jsx("span",{className:"shrink-0",children:a}),e.jsx("h1",{className:"min-w-0 break-all font-mono text-xl font-bold leading-none text-c4a-text-primary",children:t}),s&&s.length>0&&e.jsx("div",{className:"flex items-center gap-1.5 ml-2",children:s.map((n,x)=>e.jsx("span",{children:n},x))})]}),e.jsxs("button",{onClick:()=>i(-1),className:"flex items-center gap-1 text-c4a-text-muted hover:text-c4a-text-primary cursor-pointer transition-colors text-xs font-mono shrink-0 ml-4",children:[e.jsx(f,{size:14}),r("common.back")]})]}),l&&l.length>0&&e.jsx("div",{className:"mt-2 flex flex-wrap items-baseline gap-4 text-xs",children:l.map(n=>e.jsxs("span",{className:"text-c4a-text-muted",children:[n.label,"：",e.jsx("span",{className:"text-c4a-text-secondary",children:n.value})]},n.label))})]})}function N(){const{t:a}=c(),{hashId:t}=d();if(!t)return e.jsx("div",{className:"flex flex-1 items-center justify-center p-8",children:e.jsx("p",{className:"text-sm text-c4a-text-muted",children:a("common.loading")})});const s=t.length>16?t.slice(0,16)+"…":t;return e.jsxs("div",{className:"flex flex-1 flex-col p-4 md:p-6",children:[e.jsx(j,{icon:e.jsx("span",{children:"📄"}),title:`Content: ${s}`}),e.jsx(h,{hashId:t})]})}export{N as ContentDetail};

package/web/assets/ContentDetail-CqEPJhEL.js

@@ -0,0 +1 @@
+import{c as o,u as m,a as c,j as e,b as d,C as h}from"./index-hC_-Br4I.js";const p=[["path",{d:"m12 19-7-7 7-7",key:"1l729n"}],["path",{d:"M19 12H5",key:"x3x0zl"}]],f=o("arrow-left",p);function j({icon:a,title:t,badges:s,meta:l}){const i=m(),{t:r}=c();return e.jsxs("div",{children:[e.jsxs("div",{className:"flex justify-between items-center",children:[e.jsxs("div",{className:"flex min-w-0 items-center gap-2",children:[e.jsx("span",{className:"shrink-0",children:a}),e.jsx("h1",{className:"min-w-0 break-all font-mono text-xl font-bold leading-none text-c4a-text-primary",children:t}),s&&s.length>0&&e.jsx("div",{className:"flex items-center gap-1.5 ml-2",children:s.map((n,x)=>e.jsx("span",{children:n},x))})]}),e.jsxs("button",{onClick:()=>i(-1),className:"flex items-center gap-1 text-c4a-text-muted hover:text-c4a-text-primary cursor-pointer transition-colors text-xs font-mono shrink-0 ml-4",children:[e.jsx(f,{size:14}),r("common.back")]})]}),l&&l.length>0&&e.jsx("div",{className:"mt-2 flex flex-wrap items-baseline gap-4 text-xs",children:l.map(n=>e.jsxs("span",{className:"text-c4a-text-muted",children:[n.label,"：",e.jsx("span",{className:"text-c4a-text-secondary",children:n.value})]},n.label))})]})}function N(){const{t:a}=c(),{hashId:t}=d();if(!t)return e.jsx("div",{className:"flex flex-1 items-center justify-center p-8",children:e.jsx("p",{className:"text-sm text-c4a-text-muted",children:a("common.loading")})});const s=t.length>16?t.slice(0,16)+"…":t;return e.jsxs("div",{className:"flex flex-1 flex-col p-4 md:p-6",children:[e.jsx(j,{icon:e.jsx("span",{children:"📄"}),title:`Content: ${s}`}),e.jsx(h,{hashId:t})]})}export{N as ContentDetail};

package/web/assets/ContentDetail-DZuam1p0.js

@@ -0,0 +1 @@
+import{c as o,u as m,a as c,j as e,b as d,C as h}from"./index-wBO4P6CB.js";const p=[["path",{d:"m12 19-7-7 7-7",key:"1l729n"}],["path",{d:"M19 12H5",key:"x3x0zl"}]],f=o("arrow-left",p);function j({icon:a,title:t,badges:s,meta:l}){const i=m(),{t:r}=c();return e.jsxs("div",{children:[e.jsxs("div",{className:"flex justify-between items-center",children:[e.jsxs("div",{className:"flex min-w-0 items-center gap-2",children:[e.jsx("span",{className:"shrink-0",children:a}),e.jsx("h1",{className:"min-w-0 break-all font-mono text-xl font-bold leading-none text-c4a-text-primary",children:t}),s&&s.length>0&&e.jsx("div",{className:"flex items-center gap-1.5 ml-2",children:s.map((n,x)=>e.jsx("span",{children:n},x))})]}),e.jsxs("button",{onClick:()=>i(-1),className:"flex items-center gap-1 text-c4a-text-muted hover:text-c4a-text-primary cursor-pointer transition-colors text-xs font-mono shrink-0 ml-4",children:[e.jsx(f,{size:14}),r("common.back")]})]}),l&&l.length>0&&e.jsx("div",{className:"mt-2 flex flex-wrap items-baseline gap-4 text-xs",children:l.map(n=>e.jsxs("span",{className:"text-c4a-text-muted",children:[n.label,"：",e.jsx("span",{className:"text-c4a-text-secondary",children:n.value})]},n.label))})]})}function N(){const{t:a}=c(),{hashId:t}=d();if(!t)return e.jsx("div",{className:"flex flex-1 items-center justify-center p-8",children:e.jsx("p",{className:"text-sm text-c4a-text-muted",children:a("common.loading")})});const s=t.length>16?t.slice(0,16)+"…":t;return e.jsxs("div",{className:"flex flex-1 flex-col p-4 md:p-6",children:[e.jsx(j,{icon:e.jsx("span",{children:"📄"}),title:`Content: ${s}`}),e.jsx(h,{hashId:t})]})}export{N as ContentDetail};

package/web/assets/ContentDetail-qsl_01UW.js

@@ -0,0 +1 @@
+import{c as o,u as m,a as c,j as e,b as d,C as h}from"./index-CMVd9rlp.js";const p=[["path",{d:"m12 19-7-7 7-7",key:"1l729n"}],["path",{d:"M19 12H5",key:"x3x0zl"}]],f=o("arrow-left",p);function j({icon:a,title:t,badges:s,meta:l}){const i=m(),{t:r}=c();return e.jsxs("div",{children:[e.jsxs("div",{className:"flex justify-between items-center",children:[e.jsxs("div",{className:"flex min-w-0 items-center gap-2",children:[e.jsx("span",{className:"shrink-0",children:a}),e.jsx("h1",{className:"min-w-0 break-all font-mono text-xl font-bold leading-none text-c4a-text-primary",children:t}),s&&s.length>0&&e.jsx("div",{className:"flex items-center gap-1.5 ml-2",children:s.map((n,x)=>e.jsx("span",{children:n},x))})]}),e.jsxs("button",{onClick:()=>i(-1),className:"flex items-center gap-1 text-c4a-text-muted hover:text-c4a-text-primary cursor-pointer transition-colors text-xs font-mono shrink-0 ml-4",children:[e.jsx(f,{size:14}),r("common.back")]})]}),l&&l.length>0&&e.jsx("div",{className:"mt-2 flex flex-wrap items-baseline gap-4 text-xs",children:l.map(n=>e.jsxs("span",{className:"text-c4a-text-muted",children:[n.label,"：",e.jsx("span",{className:"text-c4a-text-secondary",children:n.value})]},n.label))})]})}function N(){const{t:a}=c(),{hashId:t}=d();if(!t)return e.jsx("div",{className:"flex flex-1 items-center justify-center p-8",children:e.jsx("p",{className:"text-sm text-c4a-text-muted",children:a("common.loading")})});const s=t.length>16?t.slice(0,16)+"…":t;return e.jsxs("div",{className:"flex flex-1 flex-col p-4 md:p-6",children:[e.jsx(j,{icon:e.jsx("span",{children:"📄"}),title:`Content: ${s}`}),e.jsx(h,{hashId:t})]})}export{N as ContentDetail};

package/web/assets/EntityDetail-BUdNW6Rq.js

@@ -0,0 +1 @@
+import{a as n,b as a,j as e,E as i}from"./index-hC_-Br4I.js";function r(){const{t:s}=n(),{entityId:t}=a();return t?e.jsx("div",{className:"flex flex-1 flex-col p-4 md:p-6",children:e.jsx(i,{entityId:t})}):e.jsx("div",{className:"flex flex-1 items-center justify-center p-8",children:e.jsx("p",{className:"text-sm text-c4a-text-muted",children:s("common.loading")})})}export{r as EntityDetail};

package/web/assets/EntityDetail-BafRMdUD.js

@@ -0,0 +1 @@
+import{a as n,b as a,j as e,E as i}from"./index-wBO4P6CB.js";function r(){const{t:s}=n(),{entityId:t}=a();return t?e.jsx("div",{className:"flex flex-1 flex-col p-4 md:p-6",children:e.jsx(i,{entityId:t})}):e.jsx("div",{className:"flex flex-1 items-center justify-center p-8",children:e.jsx("p",{className:"text-sm text-c4a-text-muted",children:s("common.loading")})})}export{r as EntityDetail};

package/web/assets/EntityDetail-DDfvvdX7.js

@@ -0,0 +1 @@
+import{a as n,b as a,j as e,E as i}from"./index-y0dn2kLO.js";function r(){const{t:s}=n(),{entityId:t}=a();return t?e.jsx("div",{className:"flex flex-1 flex-col p-4 md:p-6",children:e.jsx(i,{entityId:t})}):e.jsx("div",{className:"flex flex-1 items-center justify-center p-8",children:e.jsx("p",{className:"text-sm text-c4a-text-muted",children:s("common.loading")})})}export{r as EntityDetail};

package/web/assets/EntityDetail-Dssp-tuW.js

@@ -0,0 +1 @@
+import{a as n,b as a,j as e,E as i}from"./index-CMVd9rlp.js";function r(){const{t:s}=n(),{entityId:t}=a();return t?e.jsx("div",{className:"flex flex-1 flex-col p-4 md:p-6",children:e.jsx(i,{entityId:t})}):e.jsx("div",{className:"flex flex-1 items-center justify-center p-8",children:e.jsx("p",{className:"text-sm text-c4a-text-muted",children:s("common.loading")})})}export{r as EntityDetail};

package/web/assets/RelationDetail-BQfhLdnf.js

@@ -0,0 +1 @@
+import{a,b as n,j as e,R as l}from"./index-hC_-Br4I.js";function r(){const{t:s}=a(),{relationId:t}=n();return t?e.jsx("div",{className:"flex flex-1 flex-col p-4 md:p-6",children:e.jsx(l,{relationId:t})}):e.jsx("div",{className:"flex flex-1 items-center justify-center p-8",children:e.jsx("p",{className:"text-sm text-c4a-text-muted",children:s("common.loading")})})}export{r as RelationDetail};

package/web/assets/RelationDetail-CLR5sMit.js

@@ -0,0 +1 @@
+import{a,b as n,j as e,R as l}from"./index-y0dn2kLO.js";function r(){const{t:s}=a(),{relationId:t}=n();return t?e.jsx("div",{className:"flex flex-1 flex-col p-4 md:p-6",children:e.jsx(l,{relationId:t})}):e.jsx("div",{className:"flex flex-1 items-center justify-center p-8",children:e.jsx("p",{className:"text-sm text-c4a-text-muted",children:s("common.loading")})})}export{r as RelationDetail};

package/web/assets/RelationDetail-DH86ysel.js

@@ -0,0 +1 @@
+import{a,b as n,j as e,R as l}from"./index-CMVd9rlp.js";function r(){const{t:s}=a(),{relationId:t}=n();return t?e.jsx("div",{className:"flex flex-1 flex-col p-4 md:p-6",children:e.jsx(l,{relationId:t})}):e.jsx("div",{className:"flex flex-1 items-center justify-center p-8",children:e.jsx("p",{className:"text-sm text-c4a-text-muted",children:s("common.loading")})})}export{r as RelationDetail};

package/web/assets/RelationDetail-kDhcDsKg.js

@@ -0,0 +1 @@
+import{a,b as n,j as e,R as l}from"./index-wBO4P6CB.js";function r(){const{t:s}=a(),{relationId:t}=n();return t?e.jsx("div",{className:"flex flex-1 flex-col p-4 md:p-6",children:e.jsx(l,{relationId:t})}):e.jsx("div",{className:"flex flex-1 items-center justify-center p-8",children:e.jsx("p",{className:"text-sm text-c4a-text-muted",children:s("common.loading")})})}export{r as RelationDetail};