@brainpilot/skills 0.0.6

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  1. package/dist/index.d.ts +6 -0
  2. package/dist/index.d.ts.map +1 -0
  3. package/dist/index.js +28 -0
  4. package/dist/index.js.map +1 -0
  5. package/package.json +35 -0
  6. package/skills/01_Meta-Skills/contribute-skill/SKILL.md +277 -0
  7. package/skills/01_Meta-Skills/contribute-skills-via-pr/SKILL.md +163 -0
  8. package/skills/01_Meta-Skills/paper-to-skill/SKILL.md +435 -0
  9. package/skills/01_Meta-Skills/paper-to-skill/references/extraction-guide.md +286 -0
  10. package/skills/01_Meta-Skills/paper-to-skill/references/skill-template.md +250 -0
  11. package/skills/01_Meta-Skills/repo-to-skill/SKILL.md +289 -0
  12. package/skills/01_Meta-Skills/share-case/SKILL.md +253 -0
  13. package/skills/01_Meta-Skills/share-usage/README.md +63 -0
  14. package/skills/01_Meta-Skills/share-usage/SKILL.md +395 -0
  15. package/skills/01_Meta-Skills/verify-skill/SKILL.md +331 -0
  16. package/skills/02_Cross-Domain_Foundation/cogsci-power-analysis/SKILL.md +194 -0
  17. package/skills/02_Cross-Domain_Foundation/cogsci-power-analysis/references/effect-sizes.md +352 -0
  18. package/skills/02_Cross-Domain_Foundation/cogsci-power-analysis/references/sample-size-guide.md +407 -0
  19. package/skills/02_Cross-Domain_Foundation/cogsci-statistics/SKILL.md +361 -0
  20. package/skills/02_Cross-Domain_Foundation/cogsci-statistics/references/common-analyses.md +517 -0
  21. package/skills/02_Cross-Domain_Foundation/cogsci-visualization/SKILL.md +292 -0
  22. package/skills/02_Cross-Domain_Foundation/cogsci-visualization/references/plot-recipes.md +709 -0
  23. package/skills/02_Cross-Domain_Foundation/research-literacy/SKILL.md +286 -0
  24. package/skills/02_Cross-Domain_Foundation/research-literacy/references/common-assumptions.md +320 -0
  25. package/skills/02_Cross-Domain_Foundation/research-literacy/references/planning-template.md +143 -0
  26. package/skills/03_Cognitive_Psychology/alternative-uses-task-designer/SKILL.md +197 -0
  27. package/skills/03_Cognitive_Psychology/alternative-uses-task-designer/references/instruction-templates.md +60 -0
  28. package/skills/03_Cognitive_Psychology/cognitive-paradigm-design/SKILL.md +246 -0
  29. package/skills/03_Cognitive_Psychology/cognitive-paradigm-design/references/classic-paradigms.md +435 -0
  30. package/skills/03_Cognitive_Psychology/cognitive-paradigm-design/references/design-principles.md +256 -0
  31. package/skills/03_Cognitive_Psychology/creativity-self-efficacy-mediation/SKILL.md +270 -0
  32. package/skills/03_Cognitive_Psychology/creativity-self-efficacy-mediation/references/lavaan-templates.md +172 -0
  33. package/skills/03_Cognitive_Psychology/divergent-thinking-scoring/SKILL.md +238 -0
  34. package/skills/03_Cognitive_Psychology/divergent-thinking-scoring/references/scoring-rubric.md +143 -0
  35. package/skills/03_Cognitive_Psychology/drift-diffusion-model/SKILL.md +203 -0
  36. package/skills/03_Cognitive_Psychology/drift-diffusion-model/references/fitting-guide.md +571 -0
  37. package/skills/03_Cognitive_Psychology/drift-diffusion-model/references/model-variants.md +427 -0
  38. package/skills/03_Cognitive_Psychology/evidence-accumulation-selector/SKILL.md +310 -0
  39. package/skills/03_Cognitive_Psychology/evidence-accumulation-selector/references/ez-diffusion-formulas.md +137 -0
  40. package/skills/03_Cognitive_Psychology/signal-detection-analysis/SKILL.md +300 -0
  41. package/skills/03_Cognitive_Psychology/signal-detection-analysis/references/application-guide.md +278 -0
  42. package/skills/03_Cognitive_Psychology/signal-detection-analysis/references/sdt-formulas.md +318 -0
  43. package/skills/03_Cognitive_Psychology/visual-search-array-generator/SKILL.md +283 -0
  44. package/skills/03_Cognitive_Psychology/visual-search-array-generator/references/array-generation-parameters.yaml +111 -0
  45. package/skills/04_Psycholinguistics/reading-time-analysis/SKILL.md +301 -0
  46. package/skills/04_Psycholinguistics/reading-time-analysis/references/measure-computation-guide.md +195 -0
  47. package/skills/04_Psycholinguistics/self-paced-reading-designer/SKILL.md +257 -0
  48. package/skills/04_Psycholinguistics/self-paced-reading-designer/references/analysis-guide.md +356 -0
  49. package/skills/04_Psycholinguistics/self-paced-reading-designer/references/region-segmentation.md +266 -0
  50. package/skills/04_Psycholinguistics/sentence-stimulus-norming/SKILL.md +346 -0
  51. package/skills/04_Psycholinguistics/sentence-stimulus-norming/references/lexical-databases-guide.md +184 -0
  52. package/skills/05_EEG_ERP/eeg-paradigm-designer/SKILL.md +226 -0
  53. package/skills/05_EEG_ERP/eeg-paradigm-designer/references/component-paradigm-map.md +276 -0
  54. package/skills/05_EEG_ERP/eeg-paradigm-designer/references/timing-parameters.md +244 -0
  55. package/skills/05_EEG_ERP/eeg-preprocessing-pipeline-guide/SKILL.md +367 -0
  56. package/skills/05_EEG_ERP/eeg-preprocessing-pipeline-guide/references/parameter-lookup-tables.md +138 -0
  57. package/skills/05_EEG_ERP/erp-analysis/SKILL.md +185 -0
  58. package/skills/05_EEG_ERP/erp-analysis/references/erp-components.md +447 -0
  59. package/skills/05_EEG_ERP/erp-analysis/references/preprocessing-pipeline.md +277 -0
  60. package/skills/05_EEG_ERP/erp-analysis/references/statistical-approaches.md +351 -0
  61. package/skills/05_EEG_ERP/mne-python-guide/SKILL.md +174 -0
  62. package/skills/05_EEG_ERP/mne-python-guide/references/decoding.md +178 -0
  63. package/skills/05_EEG_ERP/mne-python-guide/references/io_formats.md +160 -0
  64. package/skills/05_EEG_ERP/mne-python-guide/references/preprocessing.md +259 -0
  65. package/skills/05_EEG_ERP/mne-python-guide/references/simulation.md +173 -0
  66. package/skills/05_EEG_ERP/mne-python-guide/references/source_localization.md +234 -0
  67. package/skills/05_EEG_ERP/mne-python-guide/references/statistics.md +196 -0
  68. package/skills/05_EEG_ERP/mne-python-guide/references/time_frequency.md +165 -0
  69. package/skills/05_EEG_ERP/mne-python-guide/references/visualization.md +175 -0
  70. package/skills/06_fMRI_Neuroimaging/brain-connectivity-modeler/SKILL.md +317 -0
  71. package/skills/06_fMRI_Neuroimaging/brain-connectivity-modeler/references/method-implementation-guide.md +116 -0
  72. package/skills/06_fMRI_Neuroimaging/fmri-glm-analysis-guide/SKILL.md +296 -0
  73. package/skills/06_fMRI_Neuroimaging/fmri-glm-analysis-guide/references/design-matrix-guide.md +214 -0
  74. package/skills/06_fMRI_Neuroimaging/fmri-glm-analysis-guide/references/statistical-inference.md +288 -0
  75. package/skills/06_fMRI_Neuroimaging/fmri-preprocessing-pipeline-guide/SKILL.md +274 -0
  76. package/skills/06_fMRI_Neuroimaging/fmri-preprocessing-pipeline-guide/references/quality-control.md +336 -0
  77. package/skills/06_fMRI_Neuroimaging/fmri-preprocessing-pipeline-guide/references/step-by-step-pipeline.md +380 -0
  78. package/skills/06_fMRI_Neuroimaging/fmri-task-design-guide/SKILL.md +264 -0
  79. package/skills/06_fMRI_Neuroimaging/fmri-task-design-guide/references/design-optimization-examples.md +114 -0
  80. package/skills/06_fMRI_Neuroimaging/neural-decoding-analysis/SKILL.md +273 -0
  81. package/skills/06_fMRI_Neuroimaging/neural-decoding-analysis/references/decoding-methods.md +170 -0
  82. package/skills/06_fMRI_Neuroimaging/neural-decoding-analysis/references/rsa-guide.md +266 -0
  83. package/skills/06_fMRI_Neuroimaging/pycortex-guide/SKILL.md +123 -0
  84. package/skills/06_fMRI_Neuroimaging/pycortex-guide/references/database-subjects.md +179 -0
  85. package/skills/06_fMRI_Neuroimaging/pycortex-guide/references/dataset-types.md +208 -0
  86. package/skills/06_fMRI_Neuroimaging/pycortex-guide/references/freesurfer-fmriprep.md +162 -0
  87. package/skills/06_fMRI_Neuroimaging/pycortex-guide/references/mapping-transforms.md +181 -0
  88. package/skills/06_fMRI_Neuroimaging/pycortex-guide/references/mni-utils.md +207 -0
  89. package/skills/06_fMRI_Neuroimaging/pycortex-guide/references/surface-analysis.md +219 -0
  90. package/skills/06_fMRI_Neuroimaging/pycortex-guide/references/visualization.md +251 -0
  91. package/skills/07_Computational_Modeling/act-r-model-builder/SKILL.md +297 -0
  92. package/skills/07_Computational_Modeling/act-r-model-builder/references/model-patterns.md +197 -0
  93. package/skills/07_Computational_Modeling/act-r-model-builder/references/parameter-table.yaml +204 -0
  94. package/skills/07_Computational_Modeling/bayesian-cognitive-model-builder/SKILL.md +294 -0
  95. package/skills/07_Computational_Modeling/bayesian-cognitive-model-builder/references/diagnostics-checklist.md +351 -0
  96. package/skills/07_Computational_Modeling/bayesian-cognitive-model-builder/references/prior-selection-guide.md +241 -0
  97. package/skills/07_Computational_Modeling/parameter-recovery-checker/SKILL.md +269 -0
  98. package/skills/07_Computational_Modeling/parameter-recovery-checker/references/recovery-diagnostics.md +207 -0
  99. package/skills/08_Computational_Neuroscience/brain-connectivity-modeler/SKILL.md +317 -0
  100. package/skills/08_Computational_Neuroscience/brain-connectivity-modeler/references/method-implementation-guide.md +116 -0
  101. package/skills/08_Computational_Neuroscience/neural-decoding-analysis/SKILL.md +273 -0
  102. package/skills/08_Computational_Neuroscience/neural-decoding-analysis/references/decoding-methods.md +170 -0
  103. package/skills/08_Computational_Neuroscience/neural-decoding-analysis/references/rsa-guide.md +266 -0
  104. package/skills/08_Computational_Neuroscience/neural-population-analysis-guide/SKILL.md +305 -0
  105. package/skills/08_Computational_Neuroscience/neural-population-analysis-guide/references/data-requirements.md +60 -0
  106. package/skills/08_Computational_Neuroscience/neural-population-analysis-guide/references/method-comparison.md +151 -0
  107. package/skills/08_Computational_Neuroscience/spiking-network-model-builder/SKILL.md +376 -0
  108. package/skills/08_Computational_Neuroscience/spiking-network-model-builder/references/hh-parameters.md +117 -0
  109. package/skills/08_Computational_Neuroscience/spiking-network-model-builder/references/network-regimes.md +130 -0
  110. package/skills/09_Cellular_Molecular_Neuroscience/calcium-imaging-analysis-guide/SKILL.md +258 -0
  111. package/skills/09_Cellular_Molecular_Neuroscience/calcium-imaging-analysis-guide/references/indicator-parameters.md +242 -0
  112. package/skills/09_Cellular_Molecular_Neuroscience/calcium-imaging-analysis-guide/references/pipeline-details.md +211 -0
  113. package/skills/09_Cellular_Molecular_Neuroscience/optogenetics-protocol-designer/SKILL.md +261 -0
  114. package/skills/09_Cellular_Molecular_Neuroscience/optogenetics-protocol-designer/references/opsin-catalog.md +124 -0
  115. package/skills/09_Cellular_Molecular_Neuroscience/optogenetics-protocol-designer/references/stimulation-parameters.md +304 -0
  116. package/skills/10_Clinical_Neuropsychology/lesion-symptom-mapping-guide/SKILL.md +367 -0
  117. package/skills/10_Clinical_Neuropsychology/lesion-symptom-mapping-guide/references/disconnection-guide.md +152 -0
  118. package/skills/10_Clinical_Neuropsychology/lesion-symptom-mapping-guide/references/vlsm-pipeline.md +182 -0
  119. package/skills/10_Clinical_Neuropsychology/neuropsych-battery-selector/SKILL.md +250 -0
  120. package/skills/10_Clinical_Neuropsychology/neuropsych-battery-selector/references/deficit-profiles.md +302 -0
  121. package/skills/10_Clinical_Neuropsychology/neuropsych-battery-selector/references/test-catalog.md +304 -0
  122. package/skills/11_Developmental_Cognition/infant-looking-time-designer/SKILL.md +345 -0
  123. package/skills/11_Developmental_Cognition/infant-looking-time-designer/references/age-parameters.yaml +186 -0
  124. package/skills/12_Social_Cognition/tom-task-selector/SKILL.md +379 -0
  125. package/skills/12_Social_Cognition/tom-task-selector/references/task-database.md +317 -0
  126. package/skills/13_Visualization/nature-figure/README.md +442 -0
  127. package/skills/13_Visualization/nature-figure/SKILL.md +60 -0
  128. package/skills/13_Visualization/nature-figure/assets/chart-atlas/atlas-01-bar-charts.png +0 -0
  129. package/skills/13_Visualization/nature-figure/assets/chart-atlas/atlas-02-line-trends.png +0 -0
  130. package/skills/13_Visualization/nature-figure/assets/chart-atlas/atlas-03-heatmaps.png +0 -0
  131. package/skills/13_Visualization/nature-figure/assets/chart-atlas/atlas-04-scatter-bubble.png +0 -0
  132. package/skills/13_Visualization/nature-figure/assets/chart-atlas/atlas-05-radar-polar.png +0 -0
  133. package/skills/13_Visualization/nature-figure/assets/chart-atlas/atlas-06-distributions.png +0 -0
  134. package/skills/13_Visualization/nature-figure/assets/chart-atlas/atlas-07-forest-interval.png +0 -0
  135. package/skills/13_Visualization/nature-figure/assets/chart-atlas/atlas-08-area-stacked.png +0 -0
  136. package/skills/13_Visualization/nature-figure/assets/chart-atlas/atlas-09-image-plates.png +0 -0
  137. package/skills/13_Visualization/nature-figure/assets/chart-atlas/atlas-10-network-matrix.png +0 -0
  138. package/skills/13_Visualization/nature-figure/assets/figures4papers/assets/Dispersion_motivation.png +0 -0
  139. package/skills/13_Visualization/nature-figure/assets/figures4papers/assets/Dispersion_observation.png +0 -0
  140. package/skills/13_Visualization/nature-figure/assets/figures4papers/assets/Dispersion_observation_distillation.png +0 -0
  141. package/skills/13_Visualization/nature-figure/assets/figures4papers/assets/ImmunoStruct_contrastive.png +0 -0
  142. package/skills/13_Visualization/nature-figure/assets/figures4papers/assets/ImmunoStruct_results_CEDAR.png +0 -0
  143. package/skills/13_Visualization/nature-figure/assets/figures4papers/assets/ImmunoStruct_results_IEDB.png +0 -0
  144. package/skills/13_Visualization/nature-figure/assets/figures4papers/assets/ImmunoStruct_schematic.png +0 -0
  145. package/skills/13_Visualization/nature-figure/assets/figures4papers/assets/RNAGenScape_schematic.png +0 -0
  146. package/skills/13_Visualization/nature-figure/assets/figures4papers/figure_CellSpliceNet/figures/ablation.png +0 -0
  147. package/skills/13_Visualization/nature-figure/assets/figures4papers/figure_CellSpliceNet/figures/comparison.png +0 -0
  148. package/skills/13_Visualization/nature-figure/assets/figures4papers/figure_CellSpliceNet/plot_ablation.py +86 -0
  149. package/skills/13_Visualization/nature-figure/assets/figures4papers/figure_CellSpliceNet/plot_comparison.py +109 -0
  150. package/skills/13_Visualization/nature-figure/assets/figures4papers/figure_Cflows/diffusion_swiss_roll.py +97 -0
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  152. package/skills/13_Visualization/nature-figure/assets/figures4papers/figure_Cflows/figures/fig2_comparison_GeneRegulatory.pdf +0 -0
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  158. package/skills/13_Visualization/nature-figure/assets/figures4papers/figure_Cflows/plot_comparison_Ablation.py +64 -0
  159. package/skills/13_Visualization/nature-figure/assets/figures4papers/figure_Cflows/plot_comparison_GeneRegulatory.py +74 -0
  160. package/skills/13_Visualization/nature-figure/assets/figures4papers/figure_Cflows/plot_comparison_Trajectory.py +74 -0
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  167. package/skills/13_Visualization/nature-figure/assets/figures4papers/figure_ImmunoStruct/figures/bars_ablation_Cancer.png +0 -0
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  172. package/skills/13_Visualization/nature-figure/assets/figures4papers/figure_ImmunoStruct/raw_data.py +125 -0
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  179. package/skills/13_Visualization/nature-figure/assets/figures4papers/figure_RNAGenScape/plot_hole_manifold.py +82 -0
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+ # Effect Size Reference Library for Cognitive Science and Neuroscience
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+
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+ This document provides empirically-grounded effect size estimates organized by research modality. Every estimate includes its source publication. These values should be used as **priors** for power analysis, not as guaranteed population parameters.
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+
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+ > **Key principle**: Effect sizes are properties of specific paradigms and populations, not universal constants. Always prefer the most specific estimate available for your paradigm.
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+
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+ ---
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+
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+ ## 1. Behavioral / Cognitive Psychology
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+
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+ ### 1.1 Attention and Executive Function
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+
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+ | Paradigm / Effect | Effect Size (Cohen's d) | Design | Source |
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+ |---|---|---|---|
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+ | **Stroop interference** (color naming) | d = 1.0 - 1.5 (within) | Within-subjects | MacLeod, 1991 (meta-analysis); Brysbaert, 2019 |
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+ | **Stroop interference** (between-group comparison, e.g., age) | d = 0.3 - 0.6 | Between-groups | Verhaeghen & De Meersman, 1998 (meta-analysis) |
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+ | **Flanker compatibility effect** | d = 0.4 - 0.8 (within) | Within-subjects | Brysbaert, 2019; Rouder & Haaf, 2019 |
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+ | **Simon effect** | d = 0.5 - 1.0 (within) | Within-subjects | Hommel, 2011; Lu & Proctor, 1995 |
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+ | **Task switching cost** (mixing cost) | d = 0.5 - 1.0 (within) | Within-subjects | Kiesel et al., 2010 (review) |
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+ | **Task switching cost** (switch cost) | d = 0.3 - 0.8 (within) | Within-subjects | Monsell, 2003 (review) |
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+ | **Inhibition of return** | d = 0.3 - 0.6 (within) | Within-subjects | Klein, 2000 (review) |
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+ | **Attentional blink** (T2 deficit) | d = 0.8 - 1.5 (within) | Within-subjects | Dux & Marois, 2009 (review) |
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+
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+ ### 1.2 Memory
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+
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+ | Paradigm / Effect | Effect Size (Cohen's d) | Design | Source |
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+ |---|---|---|---|
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+ | **Working memory load effect** (e.g., 2-back vs. 0-back RT) | d = 0.5 - 1.0 (within) | Within-subjects | Brysbaert, 2019; Owen et al., 2005 |
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+ | **Serial position effect** (primacy/recency) | d = 0.8 - 1.5 (within) | Within-subjects | Murdock, 1962; Howard & Kahana, 1999 |
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+ | **Levels of processing** (deep vs. shallow encoding) | d = 0.5 - 1.2 (within) | Within-subjects | Craik & Lockhart, 1972; meta-analytic range in Brysbaert, 2019 |
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+ | **Testing effect** (retrieval practice vs. restudy) | d = 0.5 - 0.7 | Within/Between | Rowland, 2014 (meta-analysis) |
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+ | **Spacing effect** | d = 0.3 - 0.5 | Within/Between | Cepeda et al., 2006 (meta-analysis) |
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+ | **Generation effect** | d = 0.4 - 0.8 (within) | Within-subjects | Bertsch et al., 2007 (meta-analysis) |
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+ | **False memory (DRM paradigm)** | d = 0.8 - 1.5 (within) | Within-subjects | Gallo, 2010 (review) |
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+
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+ ### 1.3 Language and Reading
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+
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+ | Paradigm / Effect | Effect Size (Cohen's d) | Design | Source |
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+ |---|---|---|---|
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+ | **Semantic priming** (lexical decision) | d = 0.3 - 0.8 (within) | Within-subjects | Lucas, 2000 (meta-analysis); McNamara, 2005 |
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+ | **Frequency effect** (high vs. low word frequency) | d = 0.5 - 1.0 (within) | Within-subjects | Brysbaert, 2019 |
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+ | **Masked priming** (repetition) | d = 0.3 - 0.6 (within) | Within-subjects | Bodner & Masson, 2003; Van den Bussche et al., 2009 (meta-analysis) |
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+ | **Sentence context effect** (predictable vs. unpredictable) | d = 0.5 - 1.2 (within) | Within-subjects | Staub & Clifton, 2006 (review) |
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+ | **Syntactic garden path effect** | d = 0.3 - 0.8 (within) | Within-subjects | Van Gompel et al., 2005; Sturt, 2007 |
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+ | **Bilingual disadvantage** (picture naming latency) | d = 0.2 - 0.5 | Between-groups | Ivanova & Costa, 2008 |
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+
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+ ### 1.4 Perception and Psychophysics
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+
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+ | Paradigm / Effect | Effect Size (Cohen's d) | Design | Source |
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+ |---|---|---|---|
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+ | **Visual search (feature pop-out)** | d = 1.0 - 2.0+ (within) | Within-subjects | Wolfe, 1998 (review) |
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+ | **Visual search (conjunction, set-size effect)** | d = 0.5 - 1.0 (within) | Within-subjects | Wolfe, 1998 (review) |
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+ | **Change blindness** (detection difference by condition) | d = 0.5 - 1.0 (within) | Within-subjects | Rensink, 2002 (review) |
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+ | **Multisensory integration** (race model violation) | d = 0.3 - 0.8 (within) | Within-subjects | Colonius & Diederich, 2006 |
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+ | **Motion aftereffect duration** | d = 0.5 - 1.5 (within) | Within-subjects | Mather et al., 2008 |
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+ | **Perceptual learning** (pre-post improvement) | d = 0.5 - 1.5 (within) | Within-subjects | Dosher & Lu, 2017 (review) |
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+
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+ ### 1.5 Aging and Lifespan Effects
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+
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+ | Paradigm / Effect | Effect Size (Cohen's d) | Design | Source |
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+ |---|---|---|---|
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+ | **Age-related slowing** (general RT difference, old vs. young) | d = 0.5 - 1.0 | Between-groups | Verhaeghen & Cerella, 2002 (meta-analysis) |
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+ | **Age-related WM decline** | d = 0.5 - 0.8 | Between-groups | Bopp & Verhaeghen, 2005 (meta-analysis) |
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+ | **Age-related episodic memory decline** | d = 0.5 - 1.0 | Between-groups | Old & Naveh-Benjamin, 2008 (meta-analysis) |
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+ | **Age-related inhibition deficit** (Stroop age difference) | d = 0.3 - 0.6 | Between-groups | Verhaeghen & De Meersman, 1998 (meta-analysis) |
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+ | **Cognitive training transfer** (near transfer) | d = 0.2 - 0.4 | Between-groups | Melby-Lervag et al., 2016 (meta-analysis) |
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+ | **Cognitive training transfer** (far transfer) | d = 0.0 - 0.2 | Between-groups | Sala & Gobet, 2019 (meta-analysis) |
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+
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+ ---
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+
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+ ## 2. EEG / ERP
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+
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+ ### 2.1 Major ERP Components
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+
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+ | Component / Effect | Effect Size (Cohen's d) | Typical Measurement | Source |
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+ |---|---|---|---|
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+ | **N400** (semantic violation vs. congruent) | d = 0.8 - 1.5 | Mean amplitude, 300-500 ms, centroparietal | Kutas & Federmeier, 2011 (review); Boudewyn et al., 2018 |
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+ | **N400** (semantic priming, subtle) | d = 0.3 - 0.6 | Mean amplitude, 300-500 ms | Lau et al., 2008 (meta-analysis) |
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+ | **P300 / P3b** (oddball, target vs. standard) | d = 1.0 - 2.0+ | Mean amplitude, 300-600 ms, parietal | Polich, 2007 (review) |
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+ | **P3a** (novelty response) | d = 0.5 - 1.0 | Mean amplitude, 250-400 ms, frontocentral | Polich, 2007 (review) |
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+ | **ERN** (error-related negativity: error vs. correct) | d = 0.8 - 1.5 | Peak amplitude, 0-100 ms post-response, FCz | Gehring et al., 2012 (review); Clayson et al., 2019 |
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+ | **Pe** (error positivity: error vs. correct) | d = 0.5 - 1.0 | Mean amplitude, 200-400 ms post-response, Pz | Overbeek et al., 2005 (review) |
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+ | **MMN** (mismatch negativity: deviant vs. standard) | d = 0.5 - 1.5 | Mean amplitude, 150-250 ms, frontocentral | Naatanen et al., 2007 (review) |
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+ | **N170** (face vs. non-face) | d = 0.8 - 1.5 | Peak amplitude, 130-200 ms, occipitotemporal | Rossion & Jacques, 2011 (review) |
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+ | **LPP** (late positive potential, emotional vs. neutral) | d = 0.5 - 1.0 | Mean amplitude, 400-700 ms, centroparietal | Hajcak et al., 2010 (review) |
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+ | **N2pc** (attention lateralization) | d = 0.5 - 1.0 | Contralateral - ipsilateral, 200-300 ms | Luck, 2012 (review) |
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+ | **CDA/SPCN** (WM load, set-size difference) | d = 0.5 - 1.2 | Contralateral - ipsilateral, 400-900 ms | Luria et al., 2016 (review) |
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+
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+ ### 2.2 EEG Frequency / Oscillatory Effects
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+
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+ | Effect | Effect Size (Cohen's d or r) | Frequency Band | Source |
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+ |---|---|---|---|
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+ | **Alpha power decrease** (eyes open vs. closed) | d = 1.0 - 2.0+ | 8-13 Hz | Klimesch, 1999 (review) |
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+ | **Alpha desynchronization** (task vs. rest) | d = 0.5 - 1.5 | 8-13 Hz | Pfurtscheller & Lopes da Silva, 1999 |
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+ | **Theta power increase** (WM load) | d = 0.5 - 1.0 | 4-8 Hz | Gevins et al., 1997; Jensen & Tesche, 2002 |
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+ | **Frontal theta** (conflict/error monitoring) | d = 0.3 - 0.8 | 4-8 Hz | Cavanagh & Frank, 2014 (review) |
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+ | **Gamma power** (perception/binding) | d = 0.3 - 0.8 | 30-100 Hz | Tallon-Baudry & Bertrand, 1999 (review) |
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+ | **Beta desynchronization** (motor preparation) | d = 0.5 - 1.5 | 13-30 Hz | Pfurtscheller & Lopes da Silva, 1999 |
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+
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+ ### 2.3 ERP Individual Differences and Group Comparisons
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+
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+ | Effect | Effect Size (Cohen's d) | Source |
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+ |---|---|---|
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+ | **ERN amplitude: anxiety high vs. low** | d = 0.3 - 0.5 | Moser et al., 2013 (meta-analysis) |
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+ | **P300 amplitude: ADHD vs. control** | d = 0.3 - 0.6 | Barry et al., 2003 (meta-analysis) |
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+ | **MMN amplitude: schizophrenia vs. control** | d = 0.5 - 1.0 | Umbricht & Krljes, 2005 (meta-analysis) |
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+ | **N400: age-related difference** | d = 0.3 - 0.6 | Kutas & Iragui, 1998; Wlotko et al., 2010 |
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+ | **P300 latency: aging (young vs. old)** | d = 0.5 - 1.0 | Polich, 1996 (review) |
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+
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+ ---
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+
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+ ## 3. fMRI
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+
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+ ### 3.1 Sensory and Motor Activation
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+
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+ | Contrast | Effect Size (Cohen's d) | Region | Source |
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+ |---|---|---|---|
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+ | **Visual stimulation vs. rest** | d = 1.5 - 3.0+ | Primary visual cortex (V1) | Poldrack et al., 2017 |
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+ | **Auditory stimulation vs. rest** | d = 1.0 - 2.5+ | Primary auditory cortex (A1) | Poldrack et al., 2017 |
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+ | **Motor execution (finger tap) vs. rest** | d = 1.0 - 2.5+ | Primary motor cortex (M1) | Poldrack et al., 2017 |
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+ | **Face vs. house/object** (FFA) | d = 0.8 - 1.5 | Fusiform face area | Kanwisher & Yovel, 2006 |
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+ | **Place vs. face/object** (PPA) | d = 0.8 - 1.5 | Parahippocampal place area | Epstein & Kanwisher, 1998 |
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+ | **Body vs. object** (EBA) | d = 0.5 - 1.2 | Extrastriate body area | Downing et al., 2001 |
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+
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+ ### 3.2 Higher Cognitive Processes
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+
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+ | Contrast | Effect Size (Cohen's d) | Region | Source |
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+ |---|---|---|---|
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+ | **Working memory (2-back vs. 0-back)** | d = 0.5 - 1.0 | Dorsolateral PFC, parietal | Owen et al., 2005 (meta-analysis) |
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+ | **Inhibitory control (Stop-signal / Go-NoGo)** | d = 0.4 - 0.8 | Right IFG, pre-SMA | Aron et al., 2014 (review); Swick et al., 2011 (meta-analysis) |
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+ | **Cognitive conflict (Stroop incongruent > congruent)** | d = 0.3 - 0.8 | ACC, DLPFC | Laird et al., 2005 (meta-analysis) |
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+ | **Emotional vs. neutral stimuli** | d = 0.3 - 0.8 | Amygdala | Sergerie et al., 2008 (meta-analysis) |
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+ | **Reward vs. no reward** | d = 0.5 - 1.0 | Ventral striatum | Bartra et al., 2013 (meta-analysis) |
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+ | **Episodic memory encoding (subsequent memory effect)** | d = 0.3 - 0.8 | Hippocampus, PFC | Kim, 2011 (meta-analysis) |
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+ | **Language (sentence vs. word list)** | d = 0.5 - 1.0 | Left IFG, temporal cortex | Fedorenko et al., 2010 |
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+ | **Theory of mind (mental vs. physical)** | d = 0.5 - 1.0 | TPJ, mPFC | Schurz et al., 2014 (meta-analysis) |
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+
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+ ### 3.3 Individual Differences and Brain-Behavior Associations
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+
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+ | Measure | Effect Size (r or d) | Source |
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+ |---|---|---|
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+ | **Brain-behavior correlation (general)** | r = 0.10 - 0.20 (inflated in small samples) | Marek et al., 2022 |
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+ | **Brain structure-cognition correlation** | r = 0.10 - 0.20 | Marek et al., 2022 |
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+ | **Functional connectivity-behavior correlation** | r = 0.05 - 0.15 | Marek et al., 2022 |
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+ | **Test-retest reliability of task fMRI** | ICC = 0.30 - 0.60 (moderate) | Elliott et al., 2020 |
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+ | **Test-retest reliability of resting-state FC** | ICC = 0.40 - 0.70 (moderate-good) | Noble et al., 2019 |
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+
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+ > **Critical note**: Marek et al. (2022) demonstrated in the ABCD dataset (N ≈ 4,000) that brain-behavior associations are typically r < 0.16, and that studies with N < 100 produce grossly inflated and unreliable estimates. For brain-wide association studies (BWAS), N = 1,000-2,000+ is recommended.
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+
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+ ### 3.4 Functional Connectivity
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+
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+ | Contrast | Effect Size (Cohen's d or r) | Network | Source |
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+ |---|---|---|---|
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+ | **Default mode network (task vs. rest)** | d = 0.5 - 1.5 (deactivation) | DMN (mPFC, PCC, angular gyrus) | Raichle, 2015 (review) |
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+ | **Task-positive vs. DMN anticorrelation** | r = -0.2 to -0.5 | DMN vs. frontoparietal | Fox et al., 2005 |
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+ | **Connectivity change with cognitive load** | d = 0.3 - 0.6 | Frontoparietal network | Cole et al., 2013 |
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+ | **Clinical group FC differences** | d = 0.2 - 0.5 | Variable | Deco & Kringelbach, 2014 |
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+
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+ ---
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+
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+ ## 4. Clinical and Developmental Populations
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+
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+ ### 4.1 Psychiatric Disorders (Patient vs. Control)
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+
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+ | Disorder / Measure | Effect Size (Cohen's d) | Source |
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+ |---|---|---|
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+ | **Depression: cognitive bias (negative attention)** | d = 0.3 - 0.6 | Peckham et al., 2010 (meta-analysis) |
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+ | **Depression: executive function deficits** | d = 0.3 - 0.5 | Snyder, 2013 (meta-analysis) |
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+ | **ADHD: inhibitory control deficits** | d = 0.4 - 0.7 | Willcutt et al., 2005 (meta-analysis) |
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+ | **ADHD: working memory deficits** | d = 0.3 - 0.6 | Martinussen et al., 2005 (meta-analysis) |
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+ | **Schizophrenia: general cognitive deficit** | d = 0.8 - 1.5 | Heinrichs & Zakzanis, 1998 (meta-analysis) |
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+ | **Schizophrenia: WM deficit** | d = 0.5 - 1.0 | Forbes et al., 2009 (meta-analysis) |
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+ | **Anxiety: threat bias (dot-probe)** | d = 0.2 - 0.5 | Bar-Haim et al., 2007 (meta-analysis) |
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+ | **ASD: facial emotion recognition deficit** | d = 0.4 - 0.8 | Uljarevic & Hamilton, 2013 (meta-analysis) |
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+ | **ASD: theory of mind deficit** | d = 0.5 - 1.0 | Chung et al., 2014 (meta-analysis) |
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+ | **OCD: inhibitory control deficit** | d = 0.3 - 0.6 | Abramovitch et al., 2013 (meta-analysis) |
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+
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+ ### 4.2 Neurological Conditions
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+
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+ | Condition / Measure | Effect Size (Cohen's d) | Source |
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+ |---|---|---|
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+ | **Mild TBI: processing speed** | d = 0.2 - 0.4 | Belanger et al., 2005 (meta-analysis) |
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+ | **Mild TBI: memory** | d = 0.2 - 0.5 | Belanger et al., 2005 (meta-analysis) |
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+ | **Alzheimer's (early): episodic memory** | d = 1.5 - 3.0 | Backman et al., 2005 (meta-analysis) |
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+ | **Parkinson's: executive function** | d = 0.3 - 0.7 | Kudlicka et al., 2011 (meta-analysis) |
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+ | **Stroke (left hemisphere): language deficits** | d = 0.5 - 2.0+ (highly variable) | Lazar et al., 2010 |
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+ | **Epilepsy (TLE): memory deficits** | d = 0.5 - 1.0 | Hoppe et al., 2007 (meta-analysis) |
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+
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+ ### 4.3 Developmental Effects
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+
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+ | Effect | Effect Size (Cohen's d) | Age Range | Source |
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+ |---|---|---|---|
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+ | **Inhibitory control improvement** (childhood to adolescence) | d = 0.5 - 1.0 | 5-15 years | Best & Miller, 2010 (review) |
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+ | **Working memory growth** (childhood) | d = 0.5 - 1.0 per 2-year span | 5-15 years | Gathercole et al., 2004 |
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+ | **Processing speed increase** (childhood to adolescence) | d = 0.5 - 1.5 | 6-18 years | Kail & Salthouse, 1994 |
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+ | **Theory of mind development** (false belief, pass vs. fail) | d = 0.8 - 1.5 | 3-5 years | Wellman et al., 2001 (meta-analysis) |
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+ | **Adolescent risk-taking** (vs. adults) | d = 0.3 - 0.6 | 13-17 vs. 25+ years | Defoe et al., 2015 (meta-analysis) |
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+ | **Reading intervention effectiveness** | d = 0.3 - 0.7 | 5-12 years | Galuschka et al., 2014 (meta-analysis) |
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+
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+ ### 4.4 Pharmacological / Intervention Effects
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+
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+ | Intervention / Measure | Effect Size (Cohen's d) | Source |
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+ |---|---|---|
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+ | **Methylphenidate on ADHD symptoms** | d = 0.8 - 1.0 | Faraone & Buitelaar, 2010 (meta-analysis) |
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+ | **SSRIs on depression** (vs. placebo) | d = 0.3 - 0.5 | Cipriani et al., 2018 (meta-analysis) |
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+ | **Caffeine on RT** | d = 0.3 - 0.5 | McLellan et al., 2016 (review) |
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+ | **CBT for anxiety** | d = 0.5 - 1.0 | Hofmann & Smits, 2008 (meta-analysis) |
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+ | **Cognitive remediation in schizophrenia** | d = 0.3 - 0.5 | Wykes et al., 2011 (meta-analysis) |
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+ | **Neurofeedback for ADHD** | d = 0.2 - 0.4 (blinded) | Cortese et al., 2016 (meta-analysis) |
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+
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+ ---
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+
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+ ## 5. Cross-Cutting Notes
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+
215
+ ### Effect Size Inflation in Small Samples
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+
217
+ Published effect sizes from small-sample studies are systematically inflated due to:
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+ - **Publication bias**: Only significant results are published, selecting for overestimates (Button et al., 2013)
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+ - **Researcher degrees of freedom**: Flexible analysis choices inflate effects (Simmons et al., 2011)
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+ - **Winner's curse**: The first study to find a significant effect overestimates its magnitude (Ioannidis, 2008)
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+
222
+ **Recommendation**: When using effect sizes from individual small-N studies (N < 50), apply a skeptical prior and consider using 50-75% of the reported effect size for power calculations (Perugini et al., 2014).
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+
224
+ ### Converting Between Effect Size Metrics
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+
226
+ | From | To | Formula | Reference |
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+ |---|---|---|---|
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+ | Cohen's d | r | r = d / sqrt(d² + 4) | Borenstein et al., 2009 |
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+ | r | Cohen's d | d = 2r / sqrt(1 - r²) | Borenstein et al., 2009 |
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+ | Partial eta² | Cohen's d | d = 2 * sqrt(eta² / (1 - eta²)) | Lakens, 2013 |
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+ | Cohen's d | Hedge's g | g = d * (1 - 3/(4*(n1+n2) - 9)) | Hedges, 1981 |
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+ | Odds ratio | Cohen's d | d = ln(OR) * sqrt(3) / pi | Borenstein et al., 2009 |
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+
234
+ ---
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+
236
+ ## References
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+
238
+ - Abramovitch, A., et al. (2013). Meta-analysis of intelligence and neuropsychological functioning in OCD. *Clinical Psychology Review*, 33(8), 1163-1171.
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+ - Aron, A. R., et al. (2014). Inhibition and the right inferior frontal cortex. *Trends in Cognitive Sciences*, 18(4), 177-185.
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+ - Backman, L., et al. (2005). Cognitive impairment in preclinical Alzheimer's disease. *Brain*, 128(9), 2026-2044.
241
+ - Bar-Haim, Y., et al. (2007). Threat-related attentional bias in anxious and nonanxious individuals. *Psychological Bulletin*, 133(1), 1-24.
242
+ - Barry, R. J., et al. (2003). A review of electrophysiology in ADHD: II. Event-related potentials. *Clinical Neurophysiology*, 114(2), 184-198.
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+ - Bartra, O., et al. (2013). The valuation system: A coordinate-based meta-analysis. *NeuroImage*, 76, 412-427.
244
+ - Belanger, H. G., et al. (2005). Factors moderating neuropsychological outcomes following mild TBI. *Neuropsychology Review*, 15(2), 49-75.
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+ - Bertsch, S., et al. (2007). The generation effect: A meta-analytic review. *Memory & Cognition*, 35(2), 201-210.
246
+ - Best, J. R., & Miller, P. H. (2010). A developmental perspective on executive function. *Child Development*, 81(6), 1641-1660.
247
+ - Bodner, G. E., & Masson, M. E. (2003). Beyond spreading activation. *Psychonomic Bulletin & Review*, 10(3), 645-652.
248
+ - Bopp, K. L., & Verhaeghen, P. (2005). Aging and verbal memory span. *Journals of Gerontology: Series B*, 60(5), P223-P233.
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+ - Borenstein, M., et al. (2009). *Introduction to Meta-Analysis*. Wiley.
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+ - Boudewyn, M. A., et al. (2018). How many trials does it take to get a significant ERP effect? *Psychophysiology*, 55(6), e13049.
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+ - Brysbaert, M. (2019). How many participants do we really need? *Journal of Cognition*, 2(1), 16.
252
+ - Button, K. S., et al. (2013). Power failure. *Nature Reviews Neuroscience*, 14(5), 365-376.
253
+ - Cavanagh, J. F., & Frank, M. J. (2014). Frontal theta as a mechanism for cognitive control. *Trends in Cognitive Sciences*, 18(8), 414-421.
254
+ - Cepeda, N. J., et al. (2006). Distributed practice in verbal recall tasks. *Psychological Bulletin*, 132(3), 354-380.
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+ - Chung, Y. S., et al. (2014). Social cognition in ASD: A meta-analytic review. *Research in Autism Spectrum Disorders*, 8(5), 477-486.
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+ - Cipriani, A., et al. (2018). Comparative efficacy of antidepressants. *The Lancet*, 391(10128), 1357-1366.
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