@brain-protocol/mcp 0.4.1 → 0.5.0

package/dist/store/sync.d.ts

@@ -0,0 +1,86 @@
+import type { StoreAdapter } from "./adapter.js";
+export interface SyncState {
+    mode: "local" | "cloud" | "hybrid";
+    pendingUploads: number;
+    pendingDownloads: number;
+    lastSyncAt: string | null;
+    conflicts: SyncConflict[];
+    stats: SyncStats;
+}
+export interface SyncStats {
+    totalUploads: number;
+    totalDownloads: number;
+    totalConflicts: number;
+    totalErrors: number;
+    totalIntegrityErrors: number;
+    lastSyncDurationMs: number | null;
+    lastSyncSuccessAt: string | null;
+}
+export interface SyncConflict {
+    entryId: string;
+    localUpdatedAt: string;
+    cloudUpdatedAt: string;
+    resolvedAt: string | null;
+}
+export type ConflictResolution = "keep_local" | "keep_cloud" | "keep_both";
+export interface SyncResult {
+    uploaded: number;
+    downloaded: number;
+    conflicts: number;
+    errors: string[];
+    integrityErrors: IntegrityError[];
+}
+export interface IntegrityError {
+    entryId: string;
+    expected: string;
+    actual: string;
+}
+export interface SyncLogEntry {
+    id: string;
+    entryId: string;
+    action: "upload" | "download" | "conflict" | "resolve";
+    timestamp: string;
+    error: string | null;
+}
+/**
+ * Sync engine implementing fork-on-conflict strategy.
+ * Zero data loss: conflicting entries are forked with parent_id linkage
+ * and a conflicts_with edge.
+ */
+export declare class SyncEngine {
+    private local;
+    private cloud;
+    private _stats;
+    constructor(local: StoreAdapter, cloud: StoreAdapter);
+    /** Get cumulative sync statistics */
+    getStats(): SyncStats;
+    /**
+     * Run a full sync cycle: push local changes, pull cloud changes, detect conflicts.
+     */
+    sync(): Promise<SyncResult>;
+    /**
+     * Push locally-created entries that haven't been synced yet.
+     * Entries with sync_status='pending' are candidates for upload.
+     */
+    private pushPending;
+    /**
+     * Pull entries from cloud that are newer than local or don't exist locally.
+     * On conflict: fork the entry (create new with parent_id → original + conflicts_with edge).
+     */
+    private pullFromCloud;
+    /**
+     * Verify integrity of downloaded entries by comparing content hashes.
+     * Logs mismatches to sync_log via the local store.
+     */
+    private verifyIntegrity;
+    /**
+     * Resolve a sync conflict.
+     */
+    resolveConflict(entryId: string, resolution: ConflictResolution): Promise<{
+        resolved: boolean;
+        kept: string[];
+    }>;
+}
+/** Compute SHA-256 content hash for integrity verification */
+export declare function computeContentHash(content: string): string;
+//# sourceMappingURL=sync.d.ts.map

package/dist/store/sync.d.ts.map

@@ -0,0 +1 @@
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package/dist/store/sync.js

@@ -0,0 +1,293 @@
+import { createHash } from "node:crypto";
+/**
+ * Sync engine implementing fork-on-conflict strategy.
+ * Zero data loss: conflicting entries are forked with parent_id linkage
+ * and a conflicts_with edge.
+ */
+export class SyncEngine {
+    local;
+    cloud;
+    _stats = {
+        totalUploads: 0,
+        totalDownloads: 0,
+        totalConflicts: 0,
+        totalErrors: 0,
+        totalIntegrityErrors: 0,
+        lastSyncDurationMs: null,
+        lastSyncSuccessAt: null,
+    };
+    constructor(local, cloud) {
+        this.local = local;
+        this.cloud = cloud;
+    }
+    /** Get cumulative sync statistics */
+    getStats() {
+        return { ...this._stats };
+    }
+    /**
+     * Run a full sync cycle: push local changes, pull cloud changes, detect conflicts.
+     */
+    async sync() {
+        const result = { uploaded: 0, downloaded: 0, conflicts: 0, errors: [], integrityErrors: [] };
+        const startMs = Date.now();
+        try {
+            // Phase 1: Push pending local entries to cloud
+            const uploadResult = await this.pushPending();
+            result.uploaded = uploadResult.count;
+            result.errors.push(...uploadResult.errors);
+            // Phase 2: Pull new/updated entries from cloud
+            const downloadResult = await this.pullFromCloud();
+            result.downloaded = downloadResult.count;
+            result.conflicts = downloadResult.conflicts;
+            result.errors.push(...downloadResult.errors);
+            // Phase 3: Verify integrity of downloaded entries
+            if (downloadResult.downloadedIds.length > 0) {
+                const integrityErrors = await this.verifyIntegrity(downloadResult.downloadedIds);
+                result.integrityErrors = integrityErrors;
+            }
+            // Update cumulative stats
+            this._stats.totalUploads += result.uploaded;
+            this._stats.totalDownloads += result.downloaded;
+            this._stats.totalConflicts += result.conflicts;
+            this._stats.totalErrors += result.errors.length;
+            this._stats.totalIntegrityErrors += result.integrityErrors.length;
+            this._stats.lastSyncDurationMs = Date.now() - startMs;
+            if (result.errors.length === 0) {
+                this._stats.lastSyncSuccessAt = new Date().toISOString();
+            }
+        }
+        catch (err) {
+            result.errors.push(err instanceof Error ? err.message : String(err));
+            this._stats.totalErrors++;
+            this._stats.lastSyncDurationMs = Date.now() - startMs;
+        }
+        return result;
+    }
+    /**
+     * Push locally-created entries that haven't been synced yet.
+     * Entries with sync_status='pending' are candidates for upload.
+     */
+    async pushPending() {
+        const errors = [];
+        let count = 0;
+        // Query local entries that need syncing
+        const { entries } = await this.local.query({ limit: 100 });
+        const pendingEntries = entries.filter((e) => e.sync_status === "pending" || !e.last_synced_at);
+        for (const entry of pendingEntries) {
+            try {
+                // Check if entry exists in cloud
+                const cloudEntry = await this.cloud.getById(entry.id);
+                if (cloudEntry) {
+                    // Entry exists — check for conflict
+                    const localUpdated = new Date(entry.updated_at).getTime();
+                    const cloudUpdated = new Date(cloudEntry.updated_at).getTime();
+                    if (cloudUpdated > localUpdated) {
+                        // Cloud is newer — this will be handled in pull phase
+                        continue;
+                    }
+                    if (cloudUpdated === localUpdated) {
+                        // Same timestamp — skip (already in sync)
+                        continue;
+                    }
+                    // Local is newer — push update
+                    await this.cloud.update(entry.id, {
+                        content: entry.content,
+                        content_type: entry.content_type,
+                        author: entry.author,
+                        category: entry.category,
+                        tags: entry.tags,
+                        confidence: entry.confidence,
+                        metadata: entry.metadata,
+                    });
+                }
+                else {
+                    // New entry — create in cloud
+                    await this.cloud.create({
+                        content: entry.content,
+                        content_type: entry.content_type,
+                        author: entry.author,
+                        category: entry.category,
+                        tags: entry.tags,
+                        confidence: entry.confidence,
+                        metadata: { ...entry.metadata, _sync_source_id: entry.id },
+                    });
+                }
+                count++;
+            }
+            catch (err) {
+                errors.push(`Upload ${entry.id}: ${err instanceof Error ? err.message : String(err)}`);
+            }
+        }
+        return { count, errors };
+    }
+    /**
+     * Pull entries from cloud that are newer than local or don't exist locally.
+     * On conflict: fork the entry (create new with parent_id → original + conflicts_with edge).
+     */
+    async pullFromCloud() {
+        const errors = [];
+        let count = 0;
+        let conflicts = 0;
+        const downloadedIds = [];
+        const { entries: cloudEntries } = await this.cloud.query({ limit: 100 });
+        for (const cloudEntry of cloudEntries) {
+            try {
+                const localEntry = await this.local.getById(cloudEntry.id);
+                if (!localEntry) {
+                    // New from cloud — create locally
+                    const created = await this.local.create({
+                        content: cloudEntry.content,
+                        content_type: cloudEntry.content_type,
+                        author: cloudEntry.author,
+                        category: cloudEntry.category,
+                        tags: cloudEntry.tags,
+                        confidence: cloudEntry.confidence,
+                        metadata: { ...cloudEntry.metadata, _sync_source: "cloud" },
+                    });
+                    downloadedIds.push(created.id);
+                    count++;
+                    continue;
+                }
+                const localUpdated = new Date(localEntry.updated_at).getTime();
+                const cloudUpdated = new Date(cloudEntry.updated_at).getTime();
+                if (cloudUpdated <= localUpdated) {
+                    // Local is same or newer — skip
+                    continue;
+                }
+                // Cloud is newer, but local may also have been modified
+                const syncable = localEntry;
+                const lastSynced = syncable.last_synced_at
+                    ? new Date(syncable.last_synced_at).getTime()
+                    : 0;
+                if (localUpdated > lastSynced && lastSynced > 0) {
+                    // CONFLICT: both sides modified since last sync
+                    // Fork strategy: create new entry with conflicts_with edge
+                    const forkedEntry = await this.local.create({
+                        content: cloudEntry.content,
+                        content_type: cloudEntry.content_type,
+                        author: cloudEntry.author,
+                        category: cloudEntry.category,
+                        tags: [...cloudEntry.tags, "sync-conflict"],
+                        confidence: cloudEntry.confidence,
+                        metadata: {
+                            ...cloudEntry.metadata,
+                            _sync_conflict: true,
+                            _sync_original_id: localEntry.id,
+                            _sync_cloud_updated_at: cloudEntry.updated_at,
+                        },
+                    });
+                    // Create conflicts_with edge
+                    await this.local.createEdge({
+                        source_id: forkedEntry.id,
+                        target_id: localEntry.id,
+                        edge_type: "conflicts_with",
+                        confidence: 1.0,
+                    });
+                    downloadedIds.push(forkedEntry.id);
+                    conflicts++;
+                    count++;
+                }
+                else {
+                    // No conflict — cloud is simply newer, update local
+                    await this.local.update(localEntry.id, {
+                        content: cloudEntry.content,
+                        content_type: cloudEntry.content_type,
+                        author: cloudEntry.author,
+                        category: cloudEntry.category,
+                        tags: cloudEntry.tags,
+                        confidence: cloudEntry.confidence,
+                        metadata: cloudEntry.metadata,
+                    });
+                    downloadedIds.push(localEntry.id);
+                    count++;
+                }
+            }
+            catch (err) {
+                errors.push(`Download ${cloudEntry.id}: ${err instanceof Error ? err.message : String(err)}`);
+            }
+        }
+        return { count, conflicts, errors, downloadedIds };
+    }
+    /**
+     * Verify integrity of downloaded entries by comparing content hashes.
+     * Logs mismatches to sync_log via the local store.
+     */
+    async verifyIntegrity(downloadedIds) {
+        const errors = [];
+        for (const id of downloadedIds) {
+            try {
+                const localEntry = await this.local.getById(id);
+                if (!localEntry)
+                    continue;
+                const expectedHash = computeContentHash(localEntry.content);
+                // Re-fetch from local to confirm write integrity
+                const refetched = await this.local.getById(id);
+                if (!refetched)
+                    continue;
+                const actualHash = computeContentHash(refetched.content);
+                if (expectedHash !== actualHash) {
+                    errors.push({ entryId: id, expected: expectedHash, actual: actualHash });
+                    // Log to sync_log if the store supports it
+                    if ("logSyncAction" in this.local) {
+                        this.local.logSyncAction(id, "integrity_error", `Hash mismatch: expected=${expectedHash} actual=${actualHash}`);
+                    }
+                }
+            }
+            catch {
+                // Non-fatal: skip verification for this entry
+            }
+        }
+        return errors;
+    }
+    /**
+     * Resolve a sync conflict.
+     */
+    async resolveConflict(entryId, resolution) {
+        const entry = await this.local.getById(entryId);
+        if (!entry) {
+            return { resolved: false, kept: [] };
+        }
+        const metadata = entry.metadata;
+        const originalId = metadata._sync_original_id;
+        if (!originalId) {
+            return { resolved: false, kept: [] };
+        }
+        const original = await this.local.getById(originalId);
+        if (!original) {
+            return { resolved: false, kept: [] };
+        }
+        switch (resolution) {
+            case "keep_local":
+                // Delete the forked cloud entry
+                await this.local.delete(entryId);
+                return { resolved: true, kept: [originalId] };
+            case "keep_cloud":
+                // Replace original with cloud content, delete fork
+                await this.local.update(originalId, {
+                    content: entry.content,
+                    content_type: entry.content_type,
+                    author: entry.author,
+                    category: entry.category,
+                    tags: entry.tags.filter(t => t !== "sync-conflict"),
+                    confidence: entry.confidence,
+                    metadata: Object.fromEntries(Object.entries(entry.metadata).filter(([k]) => !k.startsWith("_sync_"))),
+                });
+                await this.local.delete(entryId);
+                return { resolved: true, kept: [originalId] };
+            case "keep_both":
+                // Just remove conflict metadata — both entries stay
+                await this.local.update(entryId, {
+                    tags: entry.tags.filter(t => t !== "sync-conflict"),
+                    metadata: Object.fromEntries(Object.entries(entry.metadata).filter(([k]) => !k.startsWith("_sync_"))),
+                });
+                return { resolved: true, kept: [originalId, entryId] };
+            default:
+                return { resolved: false, kept: [] };
+        }
+    }
+}
+/** Compute SHA-256 content hash for integrity verification */
+export function computeContentHash(content) {
+    return createHash("sha256").update(content, "utf8").digest("hex");
+}
+//# sourceMappingURL=sync.js.map

package/dist/store/sync.js.map

@@ -0,0 +1 @@
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package/dist/tools/consciousness.d.ts

@@ -0,0 +1,27 @@
+/**
+ * Consciousness & Self-Healing MCP Tools — Epoch 25
+ *
+ * Academic ref: "Tool Use in Large Language Models: A Survey" (Qin et al., 2024).
+ *
+ * Provides MCP tools for:
+ * - get_consciousness_trend: Historical consciousness score analysis
+ * - suggest_connections: Find potential graph connections for an entry
+ * - search_with_context: Graph-enriched search (search + connected entries)
+ */
+import type { StoreAdapter } from "../store/adapter.js";
+/**
+ * Fetch consciousness trend from Brain API (cloud mode only).
+ * Wraps GET /health/vitals/history.
+ */
+export declare function getConsciousnessTrend(store: StoreAdapter, args: Record<string, unknown>): Promise<unknown>;
+/**
+ * Suggest potential connections for an entry by finding similar entries.
+ * Wraps the graph enrichment discovery logic.
+ */
+export declare function suggestConnections(store: StoreAdapter, args: Record<string, unknown>): Promise<unknown>;
+/**
+ * Search with context: combines search results with graph-connected entries.
+ * Returns search results enriched with their graph neighbors.
+ */
+export declare function searchWithContext(store: StoreAdapter, args: Record<string, unknown>): Promise<unknown>;
+//# sourceMappingURL=consciousness.d.ts.map

package/dist/tools/consciousness.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"consciousness.d.ts","sourceRoot":"","sources":["../../src/tools/consciousness.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AACH,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,qBAAqB,CAAC;AAQxD;;;GAGG;AACH,wBAAsB,qBAAqB,CACzC,KAAK,EAAE,YAAY,EACnB,IAAI,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GAC5B,OAAO,CAAC,OAAO,CAAC,CAiClB;AAED;;;GAGG;AACH,wBAAsB,kBAAkB,CACtC,KAAK,EAAE,YAAY,EACnB,IAAI,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GAC5B,OAAO,CAAC,OAAO,CAAC,CAqDlB;AAED;;;GAGG;AACH,wBAAsB,iBAAiB,CACrC,KAAK,EAAE,YAAY,EACnB,IAAI,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GAC5B,OAAO,CAAC,OAAO,CAAC,CA+DlB"}

package/dist/tools/consciousness.js

@@ -0,0 +1,163 @@
+/**
+ * Fetch consciousness trend from Brain API (cloud mode only).
+ * Wraps GET /health/vitals/history.
+ */
+export async function getConsciousnessTrend(store, args) {
+    if (store.mode !== "cloud") {
+        return { error: "Consciousness trend requires cloud mode" };
+    }
+    const period = args.period || "7d";
+    const validPeriods = ["1d", "7d", "30d", "90d"];
+    if (!validPeriods.includes(period)) {
+        return { error: `Invalid period. Use one of: ${validPeriods.join(", ")}` };
+    }
+    try {
+        // Use the store's HTTP client to fetch vitals history
+        const httpStore = store;
+        const client = httpStore.client;
+        if (client && typeof client.http === "function") {
+            const resp = await client.http(`/health/vitals/history?period=${period}`);
+            return resp.data;
+        }
+        // Fallback: return instruction to use direct API
+        return {
+            info: `Use GET /health/vitals/history?period=${period} to retrieve consciousness trend.`,
+            period,
+        };
+    }
+    catch {
+        return {
+            info: `Use GET /health/vitals/history?period=${period} to retrieve consciousness trend.`,
+            period,
+        };
+    }
+}
+/**
+ * Suggest potential connections for an entry by finding similar entries.
+ * Wraps the graph enrichment discovery logic.
+ */
+export async function suggestConnections(store, args) {
+    const entryId = args.entry_id;
+    if (!entryId) {
+        return { error: "entry_id is required" };
+    }
+    const limit = Math.min(Math.max(Number(args.limit) || 5, 1), 20);
+    try {
+        // Get the entry's graph to see existing connections
+        const graph = await store.traverseGraph(entryId, 1);
+        // Query for similar entries via the store
+        const entry = await store.getById(entryId);
+        if (!entry) {
+            return { error: "Entry not found" };
+        }
+        // Find entries in the same category that aren't already connected
+        const connectedIds = new Set();
+        if (graph && typeof graph === "object" && "nodes" in graph) {
+            const nodes = graph.nodes;
+            for (const node of nodes) {
+                connectedIds.add(node.entry.id);
+            }
+        }
+        // Search for similar content
+        const similar = await store.query({
+            q: entry.content.slice(0, 200),
+            category: entry.category,
+            limit: limit + connectedIds.size,
+        });
+        const suggestions = similar.entries
+            .filter((e) => !connectedIds.has(e.id) && e.id !== entryId)
+            .slice(0, limit)
+            .map((e) => ({
+            id: e.id,
+            category: e.category,
+            content_preview: e.content.slice(0, 150),
+            confidence: e.confidence,
+            suggested_edge_type: inferEdgeType(entry.category, e.category),
+        }));
+        return {
+            entry_id: entryId,
+            existing_connections: connectedIds.size - 1, // exclude self
+            suggestions,
+        };
+    }
+    catch (error) {
+        return { error: `Failed to suggest connections: ${error instanceof Error ? error.message : String(error)}` };
+    }
+}
+/**
+ * Search with context: combines search results with graph-connected entries.
+ * Returns search results enriched with their graph neighbors.
+ */
+export async function searchWithContext(store, args) {
+    const q = args.q;
+    if (!q) {
+        return { error: "q (search query) is required" };
+    }
+    const limit = Math.min(Math.max(Number(args.limit) || 5, 1), 20);
+    const graphDepth = Math.min(Math.max(Number(args.graph_depth) || 1, 0), 2);
+    try {
+        // Step 1: Search
+        const searchResults = await store.query({ q, limit });
+        if (searchResults.entries.length === 0) {
+            return { results: [], total: 0, context_entries: 0 };
+        }
+        // Step 2: Get graph context for top results (up to 3)
+        const topEntries = searchResults.entries.slice(0, 3);
+        const contextEntries = new Map();
+        if (graphDepth > 0) {
+            for (const entry of topEntries) {
+                try {
+                    const graph = await store.traverseGraph(entry.id, graphDepth);
+                    if (graph && typeof graph === "object" && "nodes" in graph) {
+                        const nodes = graph.nodes;
+                        for (const node of nodes) {
+                            if (node.depth > 0 && !searchResults.entries.some((e) => e.id === node.entry.id)) {
+                                contextEntries.set(node.entry.id, {
+                                    content_preview: node.entry.content.slice(0, 150),
+                                    category: node.entry.category,
+                                    relation: `connected to "${entry.content.slice(0, 50)}..."`,
+                                });
+                            }
+                        }
+                    }
+                }
+                catch {
+                    // Skip graph traversal errors for individual entries
+                }
+            }
+        }
+        // Step 3: Truncate results for token efficiency
+        const results = searchResults.entries.map((e) => ({
+            id: e.id,
+            content: e.content.slice(0, 500),
+            category: e.category,
+            confidence: e.confidence,
+            tags: e.tags,
+        }));
+        return {
+            results,
+            total: searchResults.total,
+            context_entries: Array.from(contextEntries.entries()).map(([id, ctx]) => ({
+                id,
+                ...ctx,
+            })),
+        };
+    }
+    catch (error) {
+        return { error: `Search failed: ${error instanceof Error ? error.message : String(error)}` };
+    }
+}
+/** Simple edge type inference for suggestions. */
+function inferEdgeType(sourceCategory, targetCategory) {
+    if (sourceCategory === targetCategory)
+        return "related_to";
+    const map = {
+        "pattern→decision": "derives_from",
+        "decision→pattern": "implements",
+        "security→pattern": "validates",
+        "code→pattern": "implements",
+        "documentation→code": "documents",
+    };
+    return map[`${sourceCategory}→${targetCategory}`] || "related_to";
+}
+//# sourceMappingURL=consciousness.js.map

package/dist/tools/consciousness.js.map

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