@bradygaster/squad-cli 0.8.25 → 0.9.0

package/dist/cli/core/init.js

@@ -2,14 +2,37 @@
  * Init command implementation — uses SDK
  * Scaffolds a new Squad project with templates, workflows, and directory structure
  */
+import fs from 'node:fs';
 import path from 'node:path';
-import { detectSquadDir } from './detect-squad-dir.js';
+import { execFileSync } from 'node:child_process';
+import { detectSquadDir, resolveWorktreeMainCheckout } from './detect-squad-dir.js';
 import { success, BOLD, RESET, YELLOW, GREEN, DIM } from './output.js';
 import { fatal } from './errors.js';
 import { detectProjectType } from './project-type.js';
-import { getPackageVersion } from './version.js';
+import { getPackageVersion, stampVersion } from './version.js';
 import { initSquad as sdkInitSquad, cleanupOrphanInitPrompt } from '@bradygaster/squad-sdk';
 const CYAN = '\x1b[36m';
+/**
+ * Detect if the target directory is inside a parent git repo.
+ * Returns the normalized git root path if a parent repo is detected,
+ * or null if dest IS the git root or no git repo exists.
+ */
+export function detectParentGitRepo(dest) {
+    try {
+        const gitRoot = execFileSync('git', ['rev-parse', '--show-toplevel'], {
+            cwd: dest, encoding: 'utf-8', stdio: ['pipe', 'pipe', 'pipe'],
+        }).trim().replace(/\//g, path.sep);
+        const normalDest = path.resolve(dest);
+        const normalGitRoot = path.resolve(gitRoot);
+        if (normalDest.toLowerCase() !== normalGitRoot.toLowerCase()) {
+            return normalGitRoot;
+        }
+    }
+    catch {
+        // No git available or not in a git repo
+    }
+    return null;
+}
 /** True when animations should be suppressed (NO_COLOR, dumb term, non-TTY). */
 export function isInitNoColor() {
     return ((process.env['NO_COLOR'] != null && process.env['NO_COLOR'] !== '') ||
@@ -67,8 +90,81 @@ export async function runInit(dest, options = {}) {
     console.log();
     // Detect project type
     const projectType = detectProjectType(dest);
+    // ── Parent git repo detection ─────────────────────────────────────
+    // Copilot resolves .github/agents/ relative to the git root.
+    // If CWD is inside a parent git repo, the agent file will be
+    // invisible to copilot because the git root points elsewhere.
+    try {
+        const gitRoot = execFileSync('git', ['rev-parse', '--show-toplevel'], {
+            cwd: dest, encoding: 'utf-8', stdio: ['pipe', 'pipe', 'pipe'],
+        }).trim().replace(/\//g, path.sep);
+        const normalDest = path.resolve(dest);
+        const normalGitRoot = path.resolve(gitRoot);
+        if (normalDest.toLowerCase() !== normalGitRoot.toLowerCase()) {
+            console.log();
+            console.log(`${YELLOW}${BOLD}⚠  Parent git repo detected${RESET}`);
+            console.log(`${YELLOW}   Git root:  ${normalGitRoot}${RESET}`);
+            console.log(`${YELLOW}   You're in: ${normalDest}${RESET}`);
+            console.log();
+            console.log(`${DIM}Copilot resolves .github/agents/ from the git root, not from here.${RESET}`);
+            console.log(`${DIM}The Squad agent won't be visible to copilot in this folder.${RESET}`);
+            console.log();
+            // Auto-fix: run git init to create a repo boundary here
+            console.log(`${CYAN}${BOLD}→${RESET} Running ${CYAN}git init${RESET} to create a repo boundary...`);
+            execFileSync('git', ['init'], { cwd: dest, encoding: 'utf-8', stdio: ['pipe', 'pipe', 'pipe'] });
+            console.log(`${GREEN}${BOLD}✓${RESET} Initialized git repo at ${normalDest}`);
+            console.log();
+        }
+    }
+    catch {
+        // No git available or not in a git repo — that's fine, continue normally.
+        // Copilot will fall back to CWD for .github/agents/ discovery.
+    }
     // Detect squad directory
     const squadInfo = detectSquadDir(dest);
+    // ── Worktree guard ────────────────────────────────────────────────
+    // Prevent silently scaffolding a duplicate .squad/ when running init
+    // from a git worktree that already has .squad/ in the main checkout.
+    const mainCheckout = resolveWorktreeMainCheckout(dest);
+    if (mainCheckout) {
+        const mainSquadDir = path.join(mainCheckout, '.squad');
+        if (fs.existsSync(mainSquadDir)) {
+            console.log();
+            console.log(`${YELLOW}${BOLD}⚠  Git worktree detected${RESET}`);
+            console.log(`${YELLOW}   Main checkout: ${mainCheckout}${RESET}`);
+            console.log(`${YELLOW}   .squad/ already exists there.${RESET}`);
+            console.log();
+            console.log(`  ${BOLD}[s]${RESET} Use shared .squad/ from main checkout ${DIM}(recommended)${RESET}`);
+            console.log(`  ${BOLD}[l]${RESET} Create a worktree-local .squad/ in this branch`);
+            console.log();
+            let useShared = true;
+            if (process.stdin.isTTY) {
+                const { createInterface } = await import('node:readline/promises');
+                const rl = createInterface({ input: process.stdin, output: process.stdout });
+                try {
+                    const answer = (await rl.question(`  Strategy [s/l, default: s]: `)).trim().toLowerCase();
+                    useShared = answer !== 'l' && answer !== 'local';
+                }
+                finally {
+                    rl.close();
+                }
+            }
+            else {
+                console.log(`  ${DIM}Non-interactive mode — defaulting to shared strategy.${RESET}`);
+            }
+            if (useShared) {
+                console.log();
+                console.log(`${GREEN}${BOLD}✓${RESET} Using shared .squad/ from ${mainCheckout}`);
+                console.log(`${DIM}  No changes made. Run squad commands from the main checkout.${RESET}`);
+                console.log();
+                return;
+            }
+            // Local strategy: fall through to scaffold .squad/ in this worktree
+            console.log();
+            console.log(`${GREEN}${BOLD}→${RESET} Creating worktree-local .squad/ in ${dest}`);
+            console.log();
+        }
+    }
     // Show deprecation warning if using .ai-team/
     if (squadInfo.isLegacy) {
         showDeprecationWarning();
@@ -82,6 +178,11 @@ export async function runInit(dest, options = {}) {
                 name: 'scribe',
                 role: 'scribe',
                 displayName: 'Scribe',
+            },
+            {
+                name: 'ralph',
+                role: 'ralph',
+                displayName: 'Ralph',
             }
         ],
         configFormat: options.sdk ? 'sdk' : 'markdown',
@@ -93,6 +194,7 @@ export async function runInit(dest, options = {}) {
         version,
         prompt: options.prompt,
         extractionDisabled: options.extractionDisabled,
+        roles: options.roles,
     };
     // Handle SIGINT to cleanup orphan .init-prompt
     const squadDir = squadInfo.path;
@@ -112,6 +214,17 @@ export async function runInit(dest, options = {}) {
         return; // Unreachable but makes TS happy
     }
     process.off('SIGINT', sigintHandler);
+    // Ensure version is fully stamped in squad.agent.md
+    const agentPath = path.join(dest, '.github', 'agents', 'squad.agent.md');
+    if (fs.existsSync(agentPath)) {
+        stampVersion(agentPath, version);
+    }
+    // Persist --roles flag for the REPL to pick up during casting
+    if (options.roles) {
+        const rolesMarker = path.join(squadDir, '.init-roles');
+        fs.writeFileSync(rolesMarker, '1', 'utf-8');
+        success(`base roles enabled — team will use built-in role catalog`);
+    }
     // Report .init-prompt storage
     if (options.prompt) {
         success(`.init-prompt stored — team will be cast when you start squad`);

package/dist/cli/core/init.js.map

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package/dist/cli/core/migrations.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"migrations.d.ts","sourceRoot":"","sources":["../../../src/cli/core/migrations.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AA+DH;;;GAGG;AACH,wBAAsB,aAAa,CACjC,QAAQ,EAAE,MAAM,EAChB,UAAU,EAAE,MAAM,EAClB,UAAU,EAAE,MAAM,GACjB,OAAO,CAAC,MAAM,EAAE,CAAC,CAiBnB"}
+{"version":3,"file":"migrations.d.ts","sourceRoot":"","sources":["../../../src/cli/core/migrations.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AA8FH;;;GAGG;AACH,wBAAsB,aAAa,CACjC,QAAQ,EAAE,MAAM,EAChB,UAAU,EAAE,MAAM,EAClB,UAAU,EAAE,MAAM,GACjB,OAAO,CAAC,MAAM,EAAE,CAAC,CAiBnB"}

package/dist/cli/core/migrations.js

@@ -38,6 +38,27 @@ const migrations = [
                 }
             }
         }
+    },
+    {
+        version: '0.9.0',
+        description: 'Copy legacy .squad skills into .copilot/skills',
+        run(squadDir) {
+            const projectRoot = path.dirname(squadDir);
+            const legacySkillsDir = path.join(squadDir, 'skills');
+            if (!fs.existsSync(legacySkillsDir)) {
+                return;
+            }
+            const skillNames = fs.readdirSync(legacySkillsDir).filter(entry => fs.existsSync(path.join(legacySkillsDir, entry, 'SKILL.md')));
+            if (skillNames.length === 0) {
+                return;
+            }
+            const copilotSkillsDir = path.join(projectRoot, '.copilot', 'skills');
+            fs.mkdirSync(copilotSkillsDir, { recursive: true });
+            for (const skillName of skillNames) {
+                fs.cpSync(path.join(legacySkillsDir, skillName), path.join(copilotSkillsDir, skillName), { recursive: true, force: false, errorOnExist: false });
+            }
+            success(`Migrated skills to .copilot/skills: ${skillNames.join(', ')}`);
+        }
     }
 ];
 /**

package/dist/cli/core/migrations.js.map

@@ -1 +1 @@
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package/dist/cli/core/templates.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"templates.d.ts","sourceRoot":"","sources":["../../../src/cli/core/templates.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAMH,+BAA+B;AAC/B,MAAM,WAAW,YAAY;IAC3B,yCAAyC;IACzC,MAAM,EAAE,MAAM,CAAC;IACf,qDAAqD;IACrD,WAAW,EAAE,MAAM,CAAC;IACpB,yDAAyD;IACzD,kBAAkB,EAAE,OAAO,CAAC;IAC5B,8BAA8B;IAC9B,WAAW,EAAE,MAAM,CAAC;CACrB;AAED;;;;;;GAMG;AACH,eAAO,MAAM,iBAAiB,EAAE,YAAY,EA4N3C,CAAC;AAEF;;;;GAIG;AACH,wBAAgB,eAAe,IAAI,MAAM,CAWxC"}

package/dist/cli/core/templates.js

@@ -144,10 +144,17 @@ export const TEMPLATE_MANIFEST = [
         overwriteOnUpgrade: false,
         description: 'Agent accumulated wisdom',
     },
+    // Issue lifecycle (squad-owned)
+    {
+        source: 'issue-lifecycle.md',
+        destination: 'issue-lifecycle.md',
+        overwriteOnUpgrade: true,
+        description: 'Issue lifecycle process template',
+    },
     // Skills subdirectory (squad-owned)
     {
         source: 'skills/squad-conventions/SKILL.md',
-        destination: 'skills/squad-conventions/SKILL.md',
+        destination: '../.copilot/skills/squad-conventions/SKILL.md',
         overwriteOnUpgrade: true,
         description: 'Squad conventions skill definition',
     },

package/dist/cli/core/templates.js.map

@@ -1 +1 @@
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+{"version":3,"file":"templates.js","sourceRoot":"","sources":["../../../src/cli/core/templates.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,aAAa,EAAE,MAAM,UAAU,CAAC;AACzC,OAAO,EAAE,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;AAC1C,OAAO,EAAE,UAAU,EAAE,MAAM,SAAS,CAAC;AAcrC;;;;;;GAMG;AACH,MAAM,CAAC,MAAM,iBAAiB,GAAmB;IAC/C,mBAAmB;IACnB;QACE,MAAM,EAAE,gBAAgB;QACxB,WAAW,EAAE,kCAAkC;QAC/C,kBAAkB,EAAE,IAAI;QACxB,WAAW,EAAE,gCAAgC;KAC9C;IAED,qDAAqD;IACrD;QACE,MAAM,EAAE,sBAAsB;QAC9B,WAAW,EAAE,sBAAsB;QACnC,kBAAkB,EAAE,IAAI;QACxB,WAAW,EAAE,0BAA0B;KACxC;IACD;QACE,MAAM,EAAE,qBAAqB;QAC7B,WAAW,EAAE,qBAAqB;QAClC,kBAAkB,EAAE,IAAI;QACxB,WAAW,EAAE,8BAA8B;KAC5C;IACD;QACE,MAAM,EAAE,uBAAuB;QAC/B,WAAW,EAAE,uBAAuB;QACpC,kBAAkB,EAAE,IAAI;QACxB,WAAW,EAAE,mCAAmC;KACjD;IAED,qDAAqD;IACrD;QACE,MAAM,EAAE,YAAY;QACpB,WAAW,EAAE,YAAY;QACzB,kBAAkB,EAAE,IAAI;QACxB,WAAW,EAAE,wBAAwB;KACtC;IACD;QACE,MAAM,EAAE,wBAAwB;QAChC,WAAW,EAAE,wBAAwB;QACrC,kBAAkB,EAAE,IAAI;QACxB,WAAW,EAAE,8BAA8B;KAC5C;IACD;QACE,MAAM,EAAE,yBAAyB;QACjC,WAAW,EAAE,yBAAyB;QACtC,kBAAkB,EAAE,IAAI;QACxB,WAAW,EAAE,+BAA+B;KAC7C;IACD;QACE,MAAM,EAAE,YAAY;QACpB,WAAW,EAAE,YAAY;QACzB,kBAAkB,EAAE,IAAI;QACxB,WAAW,EAAE,wBAAwB;KACtC;IACD;QACE,MAAM,EAAE,eAAe;QACvB,WAAW,EAAE,eAAe;QAC5B,kBAAkB,EAAE,IAAI;QACxB,WAAW,EAAE,4BAA4B;KAC1C;IACD;QACE,MAAM,EAAE,uBAAuB;QAC/B,WAAW,EAAE,uBAAuB;QACpC,kBAAkB,EAAE,IAAI;QACxB,WAAW,EAAE,kCAAkC;KAChD;IACD;QACE,MAAM,EAAE,sBAAsB;QAC9B,WAAW,EAAE,sBAAsB;QACnC,kBAAkB,EAAE,IAAI;QACxB,WAAW,EAAE,4BAA4B;KAC1C;IACD;QACE,MAAM,EAAE,uBAAuB;QAC/B,WAAW,EAAE,uBAAuB;QACpC,kBAAkB,EAAE,IAAI;QACxB,WAAW,EAAE,6BAA6B;KAC3C;IACD;QACE,MAAM,EAAE,qBAAqB;QAC7B,WAAW,EAAE,qBAAqB;QAClC,kBAAkB,EAAE,IAAI;QACxB,WAAW,EAAE,2BAA2B;KACzC;IACD;QACE,MAAM,EAAE,WAAW;QACnB,WAAW,EAAE,WAAW;QACxB,kBAAkB,EAAE,IAAI;QACxB,WAAW,EAAE,sBAAsB;KACpC;IACD;QACE,MAAM,EAAE,eAAe;QACvB,WAAW,EAAE,eAAe;QAC5B,kBAAkB,EAAE,IAAI;QACxB,WAAW,EAAE,qBAAqB;KACnC;IACD;QACE,MAAM,EAAE,mBAAmB;QAC3B,WAAW,EAAE,mBAAmB;QAChC,kBAAkB,EAAE,IAAI;QACxB,WAAW,EAAE,yBAAyB;KACvC;IACD;QACE,MAAM,EAAE,UAAU;QAClB,WAAW,EAAE,UAAU;QACvB,kBAAkB,EAAE,IAAI;QACxB,WAAW,EAAE,2BAA2B;KACzC;IAED,qCAAqC;IACrC;QACE,MAAM,EAAE,eAAe;QACvB,WAAW,EAAE,eAAe;QAC5B,kBAAkB,EAAE,KAAK;QACzB,WAAW,EAAE,+BAA+B;KAC7C;IACD;QACE,MAAM,EAAE,YAAY;QACpB,WAAW,EAAE,YAAY;QACzB,kBAAkB,EAAE,KAAK;QACzB,WAAW,EAAE,qBAAqB;KACnC;IAED,qCAAqC;IACrC;QACE,MAAM,EAAE,iBAAiB;QACzB,WAAW,EAAE,iBAAiB;QAC9B,kBAAkB,EAAE,KAAK;QACzB,WAAW,EAAE,qBAAqB;KACnC;IACD;QACE,MAAM,EAAE,oBAAoB;QAC5B,WAAW,EAAE,oBAAoB;QACjC,kBAAkB,EAAE,KAAK;QACzB,WAAW,EAAE,0BAA0B;KACxC;IAED,gCAAgC;IAChC;QACE,MAAM,EAAE,oBAAoB;QAC5B,WAAW,EAAE,oBAAoB;QACjC,kBAAkB,EAAE,IAAI;QACxB,WAAW,EAAE,kCAAkC;KAChD;IAED,oCAAoC;IACpC;QACE,MAAM,EAAE,mCAAmC;QAC3C,WAAW,EAAE,+CAA+C;QAC5D,kBAAkB,EAAE,IAAI;QACxB,WAAW,EAAE,oCAAoC;KAClD;IAED,gDAAgD;IAChD;QACE,MAAM,EAAE,wBAAwB;QAChC,WAAW,EAAE,mCAAmC;QAChD,kBAAkB,EAAE,IAAI;QACxB,WAAW,EAAE,mBAAmB;KACjC;IACD;QACE,MAAM,EAAE,0BAA0B;QAClC,WAAW,EAAE,qCAAqC;QAClD,kBAAkB,EAAE,IAAI;QACxB,WAAW,EAAE,qBAAqB;KACnC;IACD;QACE,MAAM,EAAE,+BAA+B;QACvC,WAAW,EAAE,0CAA0C;QACvD,kBAAkB,EAAE,IAAI;QACxB,WAAW,EAAE,0BAA0B;KACxC;IACD;QACE,MAAM,EAAE,qCAAqC;QAC7C,WAAW,EAAE,gDAAgD;QAC7D,kBAAkB,EAAE,IAAI;QACxB,WAAW,EAAE,gCAAgC;KAC9C;IACD;QACE,MAAM,EAAE,kCAAkC;QAC1C,WAAW,EAAE,6CAA6C;QAC1D,kBAAkB,EAAE,IAAI;QACxB,WAAW,EAAE,sCAAsC;KACpD;IACD;QACE,MAAM,EAAE,mCAAmC;QAC3C,WAAW,EAAE,8CAA8C;QAC3D,kBAAkB,EAAE,IAAI;QACxB,WAAW,EAAE,kCAAkC;KAChD;IACD;QACE,MAAM,EAAE,6BAA6B;QACrC,WAAW,EAAE,wCAAwC;QACrD,kBAAkB,EAAE,IAAI;QACxB,WAAW,EAAE,wBAAwB;KACtC;IACD;QACE,MAAM,EAAE,6BAA6B;QACrC,WAAW,EAAE,wCAAwC;QACrD,kBAAkB,EAAE,IAAI;QACxB,WAAW,EAAE,0BAA0B;KACxC;IACD;QACE,MAAM,EAAE,6BAA6B;QACrC,WAAW,EAAE,wCAAwC;QACrD,kBAAkB,EAAE,IAAI;QACxB,WAAW,EAAE,wBAAwB;KACtC;IACD;QACE,MAAM,EAAE,4BAA4B;QACpC,WAAW,EAAE,uCAAuC;QACpD,kBAAkB,EAAE,IAAI;QACxB,WAAW,EAAE,6BAA6B;KAC3C;IACD;QACE,MAAM,EAAE,iCAAiC;QACzC,WAAW,EAAE,4CAA4C;QACzD,kBAAkB,EAAE,IAAI;QACxB,WAAW,EAAE,2BAA2B;KACzC;CACF,CAAC;AAEF;;;;GAIG;AACH,MAAM,UAAU,eAAe;IAC7B,MAAM,WAAW,GAAG,aAAa,CAAC,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;IACnD,IAAI,GAAG,GAAG,OAAO,CAAC,WAAW,CAAC,CAAC;IAC/B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC;QAC3B,MAAM,SAAS,GAAG,IAAI,CAAC,GAAG,EAAE,WAAW,CAAC,CAAC;QACzC,IAAI,UAAU,CAAC,SAAS,CAAC;YAAE,OAAO,SAAS,CAAC;QAC5C,MAAM,MAAM,GAAG,OAAO,CAAC,GAAG,CAAC,CAAC;QAC5B,IAAI,MAAM,KAAK,GAAG;YAAE,MAAM;QAC1B,GAAG,GAAG,MAAM,CAAC;IACf,CAAC;IACD,MAAM,IAAI,KAAK,CAAC,+DAA+D,CAAC,CAAC;AACnF,CAAC"}

package/dist/cli/core/upgrade.d.ts

@@ -6,6 +6,7 @@
 export interface UpgradeOptions {
     migrateDirectory?: boolean;
     self?: boolean;
+    force?: boolean;
 }
 export interface UpdateInfo {
     fromVersion: string;
@@ -13,6 +14,19 @@ export interface UpdateInfo {
     filesUpdated: string[];
     migrationsRun: string[];
 }
+/**
+ * Ensure .gitattributes has required merge=union rules (idempotent)
+ */
+export declare function ensureGitattributes(dest: string): string[];
+/**
+ * Ensure .gitignore has required entries (idempotent).
+ * Skips entries already covered by a parent path (e.g. `.squad/` covers `.squad/log/`).
+ */
+export declare function ensureGitignore(dest: string): string[];
+/**
+ * Create missing infrastructure directories
+ */
+export declare function ensureDirectories(dest: string): string[];
 /**
  * Run the upgrade command
  */

package/dist/cli/core/upgrade.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"upgrade.d.ts","sourceRoot":"","sources":["../../../src/cli/core/upgrade.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAgBH,MAAM,WAAW,cAAc;IAC7B,gBAAgB,CAAC,EAAE,OAAO,CAAC;IAC3B,IAAI,CAAC,EAAE,OAAO,CAAC;CAChB;AAED,MAAM,WAAW,UAAU;IACzB,WAAW,EAAE,MAAM,CAAC;IACpB,SAAS,EAAE,MAAM,CAAC;IAClB,YAAY,EAAE,MAAM,EAAE,CAAC;IACvB,aAAa,EAAE,MAAM,EAAE,CAAC;CACzB;AAiRD;;GAEG;AACH,wBAAsB,UAAU,CAAC,IAAI,EAAE,MAAM,EAAE,OAAO,GAAE,cAAmB,GAAG,OAAO,CAAC,UAAU,CAAC,CAqJhG"}
+{"version":3,"file":"upgrade.d.ts","sourceRoot":"","sources":["../../../src/cli/core/upgrade.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAYH,MAAM,WAAW,cAAc;IAC7B,gBAAgB,CAAC,EAAE,OAAO,CAAC;IAC3B,IAAI,CAAC,EAAE,OAAO,CAAC;IACf,KAAK,CAAC,EAAE,OAAO,CAAC;CACjB;AAED,MAAM,WAAW,UAAU;IACzB,WAAW,EAAE,MAAM,CAAC;IACpB,SAAS,EAAE,MAAM,CAAC;IAClB,YAAY,EAAE,MAAM,EAAE,CAAC;IACvB,aAAa,EAAE,MAAM,EAAE,CAAC;CACzB;AAuPD;;GAEG;AACH,wBAAgB,mBAAmB,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,EAAE,CAyB1D;AAkBD;;;GAGG;AACH,wBAAgB,eAAe,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,EAAE,CAkBtD;AAED;;GAEG;AACH,wBAAgB,iBAAiB,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,EAAE,CAUxD;AAyED;;GAEG;AACH,wBAAsB,UAAU,CAAC,IAAI,EAAE,MAAM,EAAE,OAAO,GAAE,cAAmB,GAAG,OAAO,CAAC,UAAU,CAAC,CA+JhG"}

package/dist/cli/core/upgrade.js

@@ -5,35 +5,12 @@
  */
 import fs from 'node:fs';
 import path from 'node:path';
-import { fileURLToPath } from 'node:url';
-import { dirname } from 'node:path';
 import { success, warn, info, dim } from './output.js';
 import { fatal } from './errors.js';
 import { detectSquadDir } from './detect-squad-dir.js';
 import { TEMPLATE_MANIFEST, getTemplatesDir } from './templates.js';
 import { runMigrations } from './migrations.js';
-const currentFile = fileURLToPath(import.meta.url);
-const currentDir = dirname(currentFile);
-/**
- * Read version from squad.agent.md HTML comment
- */
-function readInstalledVersion(agentPath) {
-    try {
-        if (!fs.existsSync(agentPath))
-            return '0.0.0';
-        const content = fs.readFileSync(agentPath, 'utf8');
-        // Try HTML comment first (new format)
-        const commentMatch = content.match(/<!-- version: ([0-9.]+(?:-[a-z]+(?:\.\d+)?)?) -->/);
-        if (commentMatch)
-            return commentMatch[1];
-        // Fallback to frontmatter (old format)
-        const frontmatterMatch = content.match(/^version:\s*"([^"]+)"/m);
-        return frontmatterMatch ? frontmatterMatch[1] : '0.0.0';
-    }
-    catch {
-        return '0.0.0';
-    }
-}
+import { getPackageVersion, stampVersion, readInstalledVersion } from './version.js';
 /**
  * Compare semver strings: -1 (a<b), 0 (a==b), 1 (a>b)
  */
@@ -58,19 +35,6 @@ function compareSemver(a, b) {
         return a < b ? -1 : a > b ? 1 : 0;
     return 0;
 }
-/**
- * Stamp version into squad.agent.md after copying
- */
-function stampVersion(filePath, version) {
-    let content = fs.readFileSync(filePath, 'utf8');
-    // Replace version in HTML comment
-    content = content.replace(/<!-- version: [^>]+ -->/m, `<!-- version: ${version} -->`);
-    // Replace version in Identity section's Version line
-    content = content.replace(/- \*\*Version:\*\* [0-9.]+(?:-[a-z]+(?:\.\d+)?)?/m, `- **Version:** ${version}`);
-    // Replace {version} placeholder
-    content = content.replace(/`Squad v\{version\}`/g, `\`Squad v${version}\``);
-    fs.writeFileSync(filePath, content);
-}
 /**
  * Detect project type by checking marker files
  */
@@ -262,25 +226,186 @@ function writeWorkflowFile(file, srcPath, destPath, projectType) {
     }
     fs.copyFileSync(srcPath, destPath);
 }
+/* ── Infrastructure ensure functions ────────────────────────────── */
+const GITATTRIBUTES_RULES = [
+    '.squad/decisions.md merge=union',
+    '.squad/agents/*/history.md merge=union',
+    '.squad/log/** merge=union',
+    '.squad/orchestration-log/** merge=union',
+];
+const GITIGNORE_ENTRIES = [
+    '.squad/orchestration-log/',
+    '.squad/log/',
+    '.squad/decisions/inbox/',
+    '.squad/sessions/',
+    '.squad-workstream',
+];
+const ENSURE_DIRECTORIES = [
+    '.squad/identity',
+    '.squad/orchestration-log',
+    '.squad/log',
+    '.squad/sessions',
+    '.squad/decisions/inbox',
+    '.copilot/skills',
+];
+/**
+ * Ensure .gitattributes has required merge=union rules (idempotent)
+ */
+export function ensureGitattributes(dest) {
+    const filePath = path.join(dest, '.gitattributes');
+    let content = '';
+    if (fs.existsSync(filePath)) {
+        content = fs.readFileSync(filePath, 'utf8');
+    }
+    const added = [];
+    for (const rule of GITATTRIBUTES_RULES) {
+        if (!content.includes(rule)) {
+            added.push(rule);
+        }
+    }
+    if (added.length > 0) {
+        const suffix = content.length > 0 && !content.endsWith('\n') ? '\n' : '';
+        try {
+            fs.writeFileSync(filePath, content + suffix + added.join('\n') + '\n');
+        }
+        catch (err) {
+            if (err instanceof Error && 'code' in err && ['EPERM', 'EACCES'].includes(err.code ?? '')) {
+                warn('Could not update .gitattributes (read-only). Add merge=union entries manually.');
+                return [];
+            }
+            throw err;
+        }
+    }
+    return added;
+}
+/**
+ * Check whether an existing gitignore line already covers a candidate entry
+ * via parent-directory matching (e.g. `.squad/` covers `.squad/log/`).
+ */
+function isAlreadyCoveredByParent(entry, lines) {
+    for (const line of lines) {
+        const trimmed = line.trim();
+        if (!trimmed || trimmed.startsWith('#') || trimmed.startsWith('!'))
+            continue;
+        const parent = trimmed.endsWith('/') ? trimmed : trimmed + '/';
+        if (entry.startsWith(parent) && entry !== trimmed) {
+            return true;
+        }
+    }
+    return false;
+}
 /**
- * Get CLI version from package.json
+ * Ensure .gitignore has required entries (idempotent).
+ * Skips entries already covered by a parent path (e.g. `.squad/` covers `.squad/log/`).
  */
-function getCLIVersion() {
+export function ensureGitignore(dest) {
+    const filePath = path.join(dest, '.gitignore');
+    let content = '';
+    if (fs.existsSync(filePath)) {
+        content = fs.readFileSync(filePath, 'utf8');
+    }
+    const existingLines = content.split('\n');
+    const added = [];
+    for (const entry of GITIGNORE_ENTRIES) {
+        if (content.includes(entry))
+            continue;
+        if (isAlreadyCoveredByParent(entry, existingLines))
+            continue;
+        added.push(entry);
+    }
+    if (added.length > 0) {
+        const suffix = content.length > 0 && !content.endsWith('\n') ? '\n' : '';
+        fs.writeFileSync(filePath, content + suffix + added.join('\n') + '\n');
+    }
+    return added;
+}
+/**
+ * Create missing infrastructure directories
+ */
+export function ensureDirectories(dest) {
+    const created = [];
+    for (const dir of ENSURE_DIRECTORIES) {
+        const fullPath = path.join(dest, dir);
+        if (!fs.existsSync(fullPath)) {
+            fs.mkdirSync(fullPath, { recursive: true });
+            created.push(dir);
+        }
+    }
+    return created;
+}
+/**
+ * Copy all skills from package templates to .copilot/skills/ (force: false)
+ */
+function syncAllSkills(dest, templatesDir) {
+    const skillsSrc = path.join(templatesDir, 'skills');
+    const skillsDest = path.join(dest, '.copilot', 'skills');
+    if (!fs.existsSync(skillsSrc))
+        return 0;
+    fs.mkdirSync(skillsDest, { recursive: true });
+    fs.cpSync(skillsSrc, skillsDest, { recursive: true, force: false });
+    // Count skill directories synced
     try {
-        // From src/cli/core/upgrade.ts, go up to package root
-        const pkgPath = path.join(currentDir, '..', '..', '..', 'package.json');
-        const pkg = JSON.parse(fs.readFileSync(pkgPath, 'utf8'));
-        return pkg.version || '0.0.0';
+        return fs.readdirSync(skillsSrc).filter(e => fs.statSync(path.join(skillsSrc, e)).isDirectory()).length;
     }
     catch {
-        return '0.0.0';
+        return 0;
     }
 }
+/**
+ * Copy full templates/ directory to .squad/templates/ for user access
+ */
+function refreshSquadTemplatesDir(dest, templatesDir) {
+    const squadTemplatesDest = path.join(dest, '.squad', 'templates');
+    fs.mkdirSync(squadTemplatesDest, { recursive: true });
+    // Copy everything except workflows and skills (those have dedicated handling)
+    const entries = fs.readdirSync(templatesDir);
+    for (const entry of entries) {
+        if (entry === 'workflows' || entry === 'skills')
+            continue;
+        const srcPath = path.join(templatesDir, entry);
+        const destPath = path.join(squadTemplatesDest, entry);
+        const stat = fs.statSync(srcPath);
+        if (stat.isDirectory()) {
+            fs.cpSync(srcPath, destPath, { recursive: true, force: true });
+        }
+        else {
+            fs.copyFileSync(srcPath, destPath);
+        }
+    }
+}
+/**
+ * Run all ensure* checks and skill/template sync — shared by both code paths
+ */
+function runEnsureChecks(dest, templatesDir, filesUpdated) {
+    const attrAdded = ensureGitattributes(dest);
+    if (attrAdded.length > 0) {
+        success(`ensured .gitattributes (${attrAdded.length} rules added)`);
+        filesUpdated.push('.gitattributes');
+    }
+    const ignoreAdded = ensureGitignore(dest);
+    if (ignoreAdded.length > 0) {
+        success(`ensured .gitignore (${ignoreAdded.length} entries added)`);
+        filesUpdated.push('.gitignore');
+    }
+    const dirsCreated = ensureDirectories(dest);
+    if (dirsCreated.length > 0) {
+        success(`created ${dirsCreated.length} missing directories`);
+        filesUpdated.push(...dirsCreated);
+    }
+    const skillCount = syncAllSkills(dest, templatesDir);
+    if (skillCount > 0) {
+        success(`synced ${skillCount} skills to .copilot/skills/`);
+        filesUpdated.push(`skills (${skillCount})`);
+    }
+    refreshSquadTemplatesDir(dest, templatesDir);
+    success('refreshed .squad/templates/');
+    filesUpdated.push('.squad/templates/');
+}
 /**
  * Run the upgrade command
  */
 export async function runUpgrade(dest, options = {}) {
-    const cliVersion = getCLIVersion();
+    const cliVersion = getPackageVersion();
     const filesUpdated = [];
     // Detect squad directory
     const squadDirInfo = detectSquadDir(dest);
@@ -294,9 +419,9 @@ export async function runUpgrade(dest, options = {}) {
         fatal('No squad found — run init first.');
     }
     const agentDest = path.join(dest, '.github', 'agents', 'squad.agent.md');
-    const oldVersion = readInstalledVersion(agentDest);
+    const oldVersion = readInstalledVersion(agentDest) ?? '0.0.0';
     // Check if already current
-    const isAlreadyCurrent = oldVersion && oldVersion !== '0.0.0' && compareSemver(oldVersion, cliVersion) === 0;
+    const isAlreadyCurrent = !options.force && oldVersion && oldVersion !== '0.0.0' && compareSemver(oldVersion, cliVersion) === 0;
     const projectType = detectProjectType(dest);
     if (isAlreadyCurrent) {
         info(`Already up to date (v${cliVersion})`);
@@ -324,6 +449,8 @@ export async function runUpgrade(dest, options = {}) {
             success('upgraded squad.agent.md');
             filesUpdated.push('squad.agent.md');
         }
+        // Run infrastructure ensure checks even when already current
+        runEnsureChecks(dest, templatesDir, filesUpdated);
         return {
             fromVersion: oldVersion,
             toVersion: cliVersion,
@@ -386,9 +513,16 @@ export async function runUpgrade(dest, options = {}) {
             filesUpdated.push('copilot-instructions.md');
         }
     }
+    // Run infrastructure ensure checks
+    runEnsureChecks(dest, templatesDir, filesUpdated);
     console.log();
     info(`Upgrade complete: v${fromLabel} → v${cliVersion}`);
-    dim('Never touches user state: team.md, decisions/, agents/*/history.md');
+    if (migrationsApplied.some(m => m.toLowerCase().includes('scrub email'))) {
+        dim('Privacy scrub applied to .squad/ files (email addresses removed)');
+    }
+    else {
+        dim('Preserves user state: team.md, decisions/, agents/*/history.md');
+    }
     console.log();
     return {
         fromVersion: fromLabel,