@bradtaylorsf/alpha-loop 1.8.0 → 1.9.1

package/dist/lib/learning.js

@@ -7,9 +7,57 @@ import { log } from './logger.js';
 import { formatTimestamp } from './shell.js';
 import { spawnAgent } from './agent.js';
 import { buildLearnPrompt } from './prompts.js';
+/** Expected sections in learning output. */
+const LEARNING_SECTIONS = [
+    '## What Worked',
+    '## What Failed',
+    '## Patterns',
+    '## Anti-Patterns',
+    '## Suggested Skill Updates',
+];
+/**
+ * Parse raw agent output and extract only the expected learning sections.
+ * Discards prompt echoes, session logs, tool calls, and other noise.
+ */
+export function parseLearningOutput(raw) {
+    // Extract frontmatter if present
+    let frontmatter = null;
+    const fmMatch = raw.match(/^---\n([\s\S]*?)\n---/);
+    if (fmMatch) {
+        frontmatter = fmMatch[1];
+    }
+    // Extract each expected section
+    const extracted = [];
+    for (const header of LEARNING_SECTIONS) {
+        const pattern = new RegExp(`${header.replace(/[.*+?^${}()|[\]\\]/g, '\\$&')}\\n([\\s\\S]*?)(?=\\n## |$)`);
+        const match = raw.match(pattern);
+        if (match) {
+            const content = match[1].trim();
+            if (content) {
+                extracted.push(`${header}\n${content}`);
+            }
+        }
+    }
+    return { frontmatter, sections: extracted.join('\n\n') };
+}
+/**
+ * Build trace pointers for a learning file's frontmatter.
+ */
+function buildTracePointers(sessionName, issueNum) {
+    const base = `.alpha-loop/sessions/${sessionName}`;
+    return [
+        'traces:',
+        `  plan: ${base}/traces/prompts/plan-issue-${issueNum}.md`,
+        `  implement: ${base}/logs/issue-${issueNum}-implement.log`,
+        `  review: ${base}/traces/outputs/review-issue-${issueNum}.log`,
+        `  diff: ${base}/diffs/issue-${issueNum}.diff`,
+    ].join('\n');
+}
 /**
  * Extract learnings from a completed run.
- * Invokes an agent with the learn prompt and saves the output.
+ * Invokes an agent with the learn prompt, parses the output to extract
+ * only expected sections, and saves a concise learning file with trace pointers.
+ * Raw agent output is saved separately to the traces directory.
  */
 export async function extractLearnings(options) {
     const { config } = options;
@@ -49,25 +97,48 @@ export async function extractLearnings(options) {
         log.warn(`Learning extraction failed (exit ${result.exitCode}, output ${result.output.length} chars), skipping`);
         return;
     }
-    const output = result.output.trim();
-    // Validate output has frontmatter, wrap if not
-    if (output.startsWith('---')) {
-        writeFileSync(learningFile, output + '\n');
-        log.success(`Learning saved to ${learningFile}`);
+    const rawOutput = result.output.trim();
+    // Save raw agent output to traces directory if session info is available
+    if (options.sessionLogsDir) {
+        const rawDir = join(options.sessionLogsDir, 'learnings');
+        mkdirSync(rawDir, { recursive: true });
+        writeFileSync(join(rawDir, `issue-${options.issueNum}-raw.md`), rawOutput + '\n');
+        log.info(`Raw learning output saved to traces`);
+    }
+    // Parse the output to extract only expected sections
+    const { frontmatter: parsedFm, sections } = parseLearningOutput(rawOutput);
+    const today = new Date().toISOString().split('T')[0];
+    // Build frontmatter with trace pointers — always ensure key fields exist
+    const requiredFields = {
+        issue: String(options.issueNum),
+        status: options.status,
+        retries: String(options.retries),
+        duration: String(options.duration),
+        date: today,
+    };
+    const fmLines = [];
+    if (parsedFm) {
+        fmLines.push(parsedFm);
+        // Inject any missing required fields
+        for (const [key, value] of Object.entries(requiredFields)) {
+            if (!new RegExp(`^${key}:`, 'm').test(parsedFm)) {
+                fmLines.push(`${key}: ${value}`);
+            }
+        }
     }
     else {
-        const today = new Date().toISOString().split('T')[0];
-        const wrapped = `---
-issue: ${options.issueNum}
-status: ${options.status}
-retries: ${options.retries}
-duration: ${options.duration}
-date: ${today}
----
-${output}`;
-        writeFileSync(learningFile, wrapped + '\n');
-        log.success(`Learning saved to ${learningFile} (added frontmatter)`);
+        for (const [key, value] of Object.entries(requiredFields)) {
+            fmLines.push(`${key}: ${value}`);
+        }
+    }
+    // Add trace pointers if session info available
+    if (options.sessionName) {
+        fmLines.push(buildTracePointers(options.sessionName, options.issueNum));
     }
+    const conciseContent = sections || rawOutput;
+    const finalOutput = `---\n${fmLines.join('\n')}\n---\n\n${conciseContent}`;
+    writeFileSync(learningFile, finalOutput + '\n');
+    log.success(`Learning saved to ${learningFile}`);
 }
 /**
  * Count learning files in the learnings directory.
@@ -142,6 +213,8 @@ export async function generateSessionSummary(options) {
     log.step('Generating session summary...');
     // Collect all learnings from this session
     const learningContents = [];
+    if (!existsSync(learningsDir))
+        return null;
     for (const result of results) {
         const files = readdirSync(learningsDir)
             .filter((f) => f.startsWith(`issue-${result.issueNum}-`) && f.endsWith('.md'));

package/dist/lib/learning.js.map

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package/dist/lib/logger.d.ts

@@ -6,4 +6,5 @@ export declare const log: {
     step: (msg: string) => void;
     dry: (msg: string) => void;
     debug: (msg: string) => void;
+    rate: (msg: string) => void;
 };

package/dist/lib/logger.js

@@ -2,6 +2,7 @@ const RED = '\x1b[0;31m';
 const GREEN = '\x1b[0;32m';
 const YELLOW = '\x1b[1;33m';
 const BLUE = '\x1b[0;34m';
+const MAGENTA = '\x1b[0;35m';
 const CYAN = '\x1b[0;36m';
 const GRAY = '\x1b[0;90m';
 const BOLD = '\x1b[1m';
@@ -24,5 +25,6 @@ export const log = {
     step: (msg) => fmt('STEP', CYAN, msg),
     dry: (msg) => fmt('DRY', YELLOW, msg),
     debug: (msg) => fmt('DEBUG', GRAY, msg),
+    rate: (msg) => fmt('RATE', MAGENTA, msg),
 };
 //# sourceMappingURL=logger.js.map

package/dist/lib/logger.js.map

@@ -1 +1 @@
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package/dist/lib/pipeline.js

@@ -223,6 +223,7 @@ export async function processIssue(issueNum, title, body, config, session) {
     log.step('Step 2: Setting up worktree');
     let worktreePath;
     let worktreeBranch;
+    let worktreeResumed = false;
     try {
         const wt = await setupWorktree({
             issueNum,
@@ -236,12 +237,13 @@ export async function processIssue(issueNum, title, body, config, session) {
         });
         worktreePath = wt.path;
         worktreeBranch = wt.branch;
+        worktreeResumed = wt.resumed;
     }
     catch (err) {
         log.error(`Failed to set up worktree for issue #${issueNum}: ${err}`);
         if (!config.dryRun) {
-            labelIssue(config.repo, issueNum, 'failed', 'in-progress');
-            commentIssue(config.repo, issueNum, 'Agent loop failed: could not create worktree. Check logs.');
+            // Re-queue instead of marking failed — this is a setup issue, not an implementation failure
+            requeueIssue(config, issueNum);
         }
         return failureResult(issueNum, title, startTime);
     }
@@ -332,13 +334,19 @@ Rules:
     }
     // --- Step 4: Implement ---
     log.step('Step 4: Implementing');
+    // Build resume context if worktree was recovered from a previous session
+    const resumeNote = worktreeResumed
+        ? `**IMPORTANT: This worktree contains work from a previous session that was interrupted.**
+Run \`git log --oneline -10\` to see what has already been done.
+Do NOT redo work that is already committed. Build on top of existing progress.\n\n`
+        : '';
     if (!config.dryRun) {
         // Load vision and project context
         const visionContext = loadFileIfExists(join(projectDir, '.alpha-loop', 'vision.md'));
         const projectContext = loadFileIfExists(join(projectDir, '.alpha-loop', 'context.md'));
         const previousResult = getPreviousResult(session);
         const learningContext = getLearningContext(join(projectDir, '.alpha-loop', 'learnings'));
-        const implementPrompt = buildImplementPrompt({
+        const implementPrompt = resumeNote + buildImplementPrompt({
             issueNum,
             title,
             body,
@@ -363,16 +371,22 @@ Rules:
         traceOutput(session.name, issueNum, 'implement', implResult.output);
         stepCosts.push(buildStepCost('implement', issueNum, implResult, config));
         if (implResult.exitCode !== 0) {
+            // Auto-commit any uncommitted work before deciding on cleanup
+            const dirtyCheck = exec('git status --porcelain', { cwd: worktreePath });
+            if (dirtyCheck.stdout.trim()) {
+                exec('git add -A', { cwd: worktreePath });
+                exec(`git commit -m "wip: partial implementation of #${issueNum} (agent timed out or failed)"`, { cwd: worktreePath });
+            }
             if (isTransientError(implResult.output)) {
                 log.warn(`Agent hit a transient error during implementation for #${issueNum} — re-queuing`);
                 requeueIssue(config, issueNum);
-                await cleanupWorktree({ issueNum, projectDir, autoCleanup: config.autoCleanup });
+                await cleanupWorktree({ issueNum, projectDir, autoCleanup: config.autoCleanup, preserveIfCommits: true });
                 return failureResult(issueNum, title, startTime, 'transient');
             }
             log.error(`Implementation failed for issue #${issueNum}`);
             labelIssue(config.repo, issueNum, 'failed', 'in-progress');
             commentIssue(config.repo, issueNum, 'Agent loop failed during implementation. See logs for details.');
-            await cleanupWorktree({ issueNum, projectDir, autoCleanup: config.autoCleanup });
+            await cleanupWorktree({ issueNum, projectDir, autoCleanup: config.autoCleanup, preserveIfCommits: true });
             return failureResult(issueNum, title, startTime, 'permanent');
         }
         // Auto-commit if agent didn't
@@ -728,6 +742,8 @@ Rules:
         verifyOutput,
         body,
         config,
+        sessionLogsDir: session.logsDir,
+        sessionName: session.name,
     });
     // --- Step 9b: Write full traces (Meta-Harness style) ---
     stepsCompleted.push('learn');
@@ -799,20 +815,27 @@ Rules:
         log.dry('Would update issue status to in-review');
     }
     // --- Step 11: Auto-merge ---
+    let mergeSucceeded = false;
     if (config.autoMerge && !config.dryRun && prUrl) {
-        log.step('Step 11: Auto-merging PR');
-        try {
-            mergePR(config.repo, worktreeBranch);
-            // Update local repo to include merged changes
-            exec('git fetch origin', { cwd: projectDir });
-            const currentBranch = exec('git rev-parse --abbrev-ref HEAD', { cwd: projectDir }).stdout;
-            if (currentBranch !== session.branch) {
-                exec(`git checkout "${session.branch}"`, { cwd: projectDir });
-            }
-            exec(`git pull origin "${session.branch}"`, { cwd: projectDir });
+        if (!testsPassing) {
+            log.warn('Skipping auto-merge: tests are not passing');
         }
-        catch (err) {
-            log.warn(`Auto-merge failed: ${err}`);
+        else {
+            log.step('Step 11: Auto-merging PR');
+            try {
+                mergePR(config.repo, worktreeBranch);
+                mergeSucceeded = true;
+                // Update local repo to include merged changes
+                exec('git fetch origin', { cwd: projectDir });
+                const currentBranch = exec('git rev-parse --abbrev-ref HEAD', { cwd: projectDir }).stdout;
+                if (currentBranch !== session.branch) {
+                    exec(`git checkout "${session.branch}"`, { cwd: projectDir });
+                }
+                exec(`git pull origin "${session.branch}"`, { cwd: projectDir });
+            }
+            catch (err) {
+                log.warn(`Auto-merge failed: ${err}`);
+            }
         }
     }
     else if (config.dryRun) {
@@ -820,12 +843,24 @@ Rules:
     }
     // --- Step 12: Cleanup ---
     log.step('Step 12: Cleanup');
-    await cleanupWorktree({
-        issueNum,
-        projectDir,
-        autoCleanup: config.autoCleanup,
-        dryRun: config.dryRun,
-    });
+    if (!mergeSucceeded && config.autoMerge && prUrl) {
+        // Merge was expected but didn't happen (tests failing or merge failed) — preserve worktree for recovery
+        await cleanupWorktree({
+            issueNum,
+            projectDir,
+            autoCleanup: config.autoCleanup,
+            preserveIfCommits: true,
+            dryRun: config.dryRun,
+        });
+    }
+    else {
+        await cleanupWorktree({
+            issueNum,
+            projectDir,
+            autoCleanup: config.autoCleanup,
+            dryRun: config.dryRun,
+        });
+    }
     const result = {
         issueNum,
         title,
@@ -874,6 +909,7 @@ export async function processBatch(issues, config, session) {
     const batchId = issueNums.join('-');
     let worktreePath;
     let worktreeBranch;
+    let worktreeResumed = false;
     try {
         const wt = await setupWorktree({
             issueNum: issues[0].number, // Use first issue number for branch naming
@@ -887,9 +923,13 @@ export async function processBatch(issues, config, session) {
         });
         worktreePath = wt.path;
         worktreeBranch = wt.branch;
+        worktreeResumed = wt.resumed;
     }
     catch (err) {
         log.error(`Failed to set up worktree for batch: ${err}`);
+        // Re-queue issues back to ready state so they aren't stuck as "In Progress"
+        for (const issue of issues)
+            requeueIssue(config, issue.number);
         return issues.map((i) => failureResult(i.number, i.title, startTime, 'permanent'));
     }
     // --- Step 3: Fetch comments for all issues ---
@@ -917,9 +957,15 @@ export async function processBatch(issues, config, session) {
     // --- Step 4: Batch plan ---
     log.step('Batch Step 3: Planning all issues');
     const plans = new Map();
+    // Build resume context if worktree was recovered from a previous session
+    const resumeNote = worktreeResumed
+        ? `**IMPORTANT: This worktree contains work from a previous session that was interrupted.**
+Run \`git log --oneline -10\` to see what has already been done.
+Do NOT redo work that is already committed. Build on top of existing progress.\n\n`
+        : '';
     if (!config.dryRun) {
         try {
-            const planPrompt = buildBatchPlanPrompt({ issues: batchIssues });
+            const planPrompt = resumeNote + buildBatchPlanPrompt({ issues: batchIssues });
             tracePrompt(session.name, issues[0].number, 'batch-plan', planPrompt);
             const planResult = await spawnAgent({
                 agent: config.agent,
@@ -966,7 +1012,7 @@ export async function processBatch(issues, config, session) {
             const plan = plans.get(i.number) ?? DEFAULT_PLAN;
             return `### Plan for #${i.number}: ${i.title}\n${plan.implementation || '(no plan)'}`;
         }).join('\n\n');
-        const implementPrompt = buildBatchImplementPrompt({
+        const implementPrompt = resumeNote + buildBatchImplementPrompt({
             issues: batchIssues,
             planContent: allPlans,
             visionContext: visionContext ?? undefined,
@@ -985,11 +1031,18 @@ export async function processBatch(issues, config, session) {
         traceOutput(session.name, issues[0].number, 'batch-implement', implResult.output);
         stepCosts.push(buildStepCost('implement', issues[0].number, implResult, config));
         if (implResult.exitCode !== 0) {
+            // Auto-commit any uncommitted work before deciding on cleanup
+            const dirtyCheck = exec('git status --porcelain', { cwd: worktreePath });
+            if (dirtyCheck.stdout.trim()) {
+                exec('git add -A', { cwd: worktreePath });
+                const issueRefs = issues.map((i) => `#${i.number}`).join(', ');
+                exec(`git commit -m "wip: partial batch implementation of ${issueRefs} (agent timed out or failed)"`, { cwd: worktreePath });
+            }
             if (isTransientError(implResult.output)) {
                 log.warn('Agent hit a transient error during batch implementation — re-queuing');
                 for (const issue of issues)
                     requeueIssue(config, issue.number);
-                await cleanupWorktree({ issueNum: issues[0].number, projectDir, autoCleanup: config.autoCleanup });
+                await cleanupWorktree({ issueNum: issues[0].number, projectDir, autoCleanup: config.autoCleanup, preserveIfCommits: true });
                 return issues.map((i) => failureResult(i.number, i.title, startTime, 'transient'));
             }
             log.error('Batch implementation failed');
@@ -997,7 +1050,7 @@ export async function processBatch(issues, config, session) {
                 labelIssue(config.repo, issue.number, 'failed', 'in-progress');
                 commentIssue(config.repo, issue.number, 'Agent loop failed during batch implementation. See logs.');
             }
-            await cleanupWorktree({ issueNum: issues[0].number, projectDir, autoCleanup: config.autoCleanup });
+            await cleanupWorktree({ issueNum: issues[0].number, projectDir, autoCleanup: config.autoCleanup, preserveIfCommits: true });
             return issues.map((i) => failureResult(i.number, i.title, startTime, 'permanent'));
         }
         // Auto-commit if agent didn't
@@ -1268,29 +1321,48 @@ export async function processBatch(issues, config, session) {
         }
     }
     // --- Step 10: Auto-merge ---
+    let mergeSucceeded = false;
     if (config.autoMerge && !config.dryRun && prUrl) {
-        log.step('Batch Step 9: Auto-merging PR');
-        try {
-            mergePR(config.repo, worktreeBranch);
-            exec('git fetch origin', { cwd: projectDir });
-            const currentBranch = exec('git rev-parse --abbrev-ref HEAD', { cwd: projectDir }).stdout;
-            if (currentBranch !== session.branch) {
-                exec(`git checkout "${session.branch}"`, { cwd: projectDir });
-            }
-            exec(`git pull origin "${session.branch}"`, { cwd: projectDir });
+        if (!testsPassing) {
+            log.warn('Skipping auto-merge: tests are not passing');
         }
-        catch (err) {
-            log.warn(`Auto-merge failed: ${err}`);
+        else {
+            log.step('Batch Step 9: Auto-merging PR');
+            try {
+                mergePR(config.repo, worktreeBranch);
+                mergeSucceeded = true;
+                exec('git fetch origin', { cwd: projectDir });
+                const currentBranch = exec('git rev-parse --abbrev-ref HEAD', { cwd: projectDir }).stdout;
+                if (currentBranch !== session.branch) {
+                    exec(`git checkout "${session.branch}"`, { cwd: projectDir });
+                }
+                exec(`git pull origin "${session.branch}"`, { cwd: projectDir });
+            }
+            catch (err) {
+                log.warn(`Auto-merge failed: ${err}`);
+            }
         }
     }
     // --- Step 11: Cleanup ---
     log.step('Batch Step 10: Cleanup');
-    await cleanupWorktree({
-        issueNum: issues[0].number,
-        projectDir,
-        autoCleanup: config.autoCleanup,
-        dryRun: config.dryRun,
-    });
+    if (!mergeSucceeded && config.autoMerge && prUrl) {
+        // Merge was expected but didn't happen (tests failing or merge failed) — preserve worktree for recovery
+        await cleanupWorktree({
+            issueNum: issues[0].number,
+            projectDir,
+            autoCleanup: config.autoCleanup,
+            preserveIfCommits: true,
+            dryRun: config.dryRun,
+        });
+    }
+    else {
+        await cleanupWorktree({
+            issueNum: issues[0].number,
+            projectDir,
+            autoCleanup: config.autoCleanup,
+            dryRun: config.dryRun,
+        });
+    }
     const successCount = results.filter((r) => r.status === 'success').length;
     log.success(`Batch complete: ${successCount}/${issues.length} issues succeeded in ${duration}s`);
     if (prUrl)