@bluefly/openstandardagents 0.4.3 → 0.4.5

package/examples/v0.3.6-features/genetics-fitness-scoring.ossa.yaml

@@ -1,551 +0,0 @@
-# OSSA v0.3.6 Example: Fitness-Based Selection
-#
-# This example demonstrates comprehensive fitness evaluation and selection
-# strategies for agent breeding programs. Shows custom fitness metrics,
-# weighted scoring, comparative analysis, and tournament selection.
-#
-# Scenario:
-#   - Data analysis agent with custom fitness metrics
-#   - Multi-dimensional fitness evaluation
-#   - Weighted aggregate scoring
-#   - Comparative fitness analysis against population
-#   - Tournament selection breeding strategy
-#
-# Educational Focus:
-#   - Custom fitness metrics (domain-specific)
-#   - Multi-objective optimization
-#   - Weighted fitness aggregation
-#   - Population-relative scoring
-#   - Selection strategies (tournament, roulette, elite)
-#   - Pareto frontier analysis
-
-apiVersion: ossa/v0.4.1
-kind: Agent
-
-metadata:
-  name: data-analyst-fitness-optimized-gen3
-  namespace: fitness-lab
-  version: 3.1.0
-  description: |
-    Third-generation data analysis agent optimized through fitness-based
-    tournament selection. Demonstrates comprehensive multi-objective
-    fitness evaluation and population-relative scoring.
-
-  labels:
-    domain: data
-    subdomain: analytics
-    generation: "3"
-    breeding-strategy: tournament-selection
-    fitness-optimization: pareto-optimal
-    example: fitness-scoring
-
-  taxonomy:
-    domain: data
-    subdomain: analytics
-    capability: data_analysis
-    concerns:
-      - quality
-      - performance
-      - cost
-
-  # Decentralized Identity
-  decentralized_identity:
-    did: "did:ossa:data-analyst-fitness-gen3-7e6f5d4c3b2a1098fedcba"
-    public_key: "ed25519:1234567890abcdefedcba09876543210fedcba098765"
-
-    credentials:
-      - "@context":
-          - "https://www.w3.org/2018/credentials/v1"
-        type:
-          - VerifiableCredential
-          - DataAnalysisCapability
-        credentialSubject:
-          id: "did:ossa:data-analyst-fitness-gen3-7e6f5d4c3b2a1098fedcba"
-          capability: advanced_data_analysis
-          specializations:
-            - statistical_analysis
-            - predictive_modeling
-            - data_visualization
-            - pattern_recognition
-          certification_level: advanced
-        issuer: "did:ossa:data-science-authority"
-        issuanceDate: "2026-01-27T15:00:00Z"
-        proof:
-          type: Ed25519Signature2020
-          created: "2026-01-27T15:00:00Z"
-          proofPurpose: assertionMethod
-          verificationMethod: "did:ossa:data-science-authority#key-1"
-          jws: "eyJhbGciOiJFZERTQSJ9..fitness-signature"
-
-    reputation:
-      credit_score: 840
-      trust_network:
-        - "did:ossa:gen2-parent-statistical-analyst"
-        - "did:ossa:gen2-parent-predictive-modeler"
-        - "did:ossa:data-science-mentor"
-      endorsements:
-        - endorser_did: "did:ossa:data-science-mentor"
-          skill: statistical_analysis
-          rating: 5
-          timestamp: "2026-01-26T12:00:00Z"
-          signature: "ed25519-stats-endorsement"
-
-  # GENETICS: Tournament selection breeding
-  genetics:
-    generation: 3
-
-    # Parents selected via tournament selection (fitness-based)
-    parent_dids:
-      - "did:ossa:gen2-parent-statistical-analyst"
-      - "did:ossa:gen2-parent-predictive-modeler"
-
-    # Ancestor lineage
-    ancestor_dids:
-      # Gen 2 parents (in parent_dids)
-      # Gen 1 grandparents (4)
-      - "did:ossa:gen1-stats-specialist"
-      - "did:ossa:gen1-stats-generalist"
-      - "did:ossa:gen1-ml-specialist"
-      - "did:ossa:gen1-ml-generalist"
-      # Gen 0 founders (8)
-      - "did:ossa:gen0-descriptive-stats"
-      - "did:ossa:gen0-inferential-stats"
-      - "did:ossa:gen0-regression-analysis"
-      - "did:ossa:gen0-classification"
-      - "did:ossa:gen0-clustering"
-      - "did:ossa:gen0-time-series"
-      - "did:ossa:gen0-anomaly-detection"
-      - "did:ossa:gen0-dimensionality-reduction"
-
-    # Inherited traits
-    inherited_traits:
-      - trait_name: statistical_rigor
-        source_parent: "did:ossa:gen2-parent-statistical-analyst"
-        expression: 0.93
-        description: "Methodologically sound statistical analysis"
-
-      - trait_name: predictive_accuracy
-        source_parent: "did:ossa:gen2-parent-predictive-modeler"
-        expression: 0.91
-        description: "High-quality predictive models"
-
-      - trait_name: interpretability
-        source_parent: "did:ossa:gen2-parent-statistical-analyst"
-        expression: 0.88
-        description: "Clear explanations of analytical results"
-
-      - trait_name: computational_efficiency
-        source_parent: "did:ossa:gen2-parent-predictive-modeler"
-        expression: 0.85
-        description: "Fast computation on large datasets"
-
-    # Mutations
-    mutations:
-      - mutation_type: capability_enhancement
-        description: "Automated feature engineering for tabular data"
-        beneficial: true
-        generation_introduced: 3
-
-      - mutation_type: performance_optimization
-        description: "Streaming data processing for large datasets"
-        beneficial: true
-        generation_introduced: 3
-
-    # COMPREHENSIVE FITNESS EVALUATION
-    fitness:
-      # Overall aggregate fitness (weighted average)
-      score: 0.89
-
-      # Standard fitness metrics (OSSA core)
-      metrics:
-        speed: 0.87              # Analysis completion time
-        accuracy: 0.92           # Correctness of insights
-        efficiency: 0.86         # Token/compute cost
-        adaptability: 0.88       # Performance on novel datasets
-
-      # CUSTOM METRICS: Domain-specific for data analysis
-      custom_metrics:
-        # Statistical validity
-        statistical_rigor:
-          score: 0.93
-          description: "Proper hypothesis testing, significance levels, assumptions checking"
-          measurement: "% of analyses passing statistical validation"
-
-        # Predictive performance
-        model_accuracy:
-          score: 0.91
-          description: "Predictive model performance (R², F1, AUC-ROC)"
-          measurement: "Average cross-validated performance across tasks"
-
-        # Result interpretability
-        interpretability:
-          score: 0.88
-          description: "Clarity and actionability of insights"
-          measurement: "Human evaluator ratings (1-5 scale, normalized)"
-
-        # Data quality handling
-        robustness:
-          score: 0.85
-          description: "Performance on messy/incomplete data"
-          measurement: "Accuracy degradation with missing/noisy data"
-
-        # Insight generation
-        insight_quality:
-          score: 0.90
-          description: "Novelty and business value of insights"
-          measurement: "Expert panel ratings on insight actionability"
-
-        # Visualization quality
-        visualization_quality:
-          score: 0.87
-          description: "Quality of generated charts and dashboards"
-          measurement: "Design principles adherence + clarity scores"
-
-        # Computational cost
-        token_efficiency:
-          score: 0.86
-          description: "Analysis quality per token consumed"
-          measurement: "Insight value / token cost ratio"
-
-        # Dataset size handling
-        scalability:
-          score: 0.84
-          description: "Performance on large datasets (>1M rows)"
-          measurement: "Completion time and accuracy on scaled datasets"
-
-      # WEIGHTED AGGREGATE SCORING
-      scoring_methodology:
-        # Weights for aggregate score calculation
-        weights:
-          # Standard metrics (40% total)
-          speed: 0.10
-          accuracy: 0.15
-          efficiency: 0.10
-          adaptability: 0.05
-
-          # Custom metrics (60% total - domain-critical)
-          statistical_rigor: 0.15
-          model_accuracy: 0.15
-          interpretability: 0.10
-          robustness: 0.05
-          insight_quality: 0.10
-          visualization_quality: 0.03
-          token_efficiency: 0.01
-          scalability: 0.01
-
-        # Verification: sum(weights) = 1.00
-        total_weight: 1.00
-
-        # Calculation
-        formula: |
-          score = sum(metric_value * weight for each metric)
-          0.89 = 0.87*0.10 + 0.92*0.15 + 0.86*0.10 + 0.88*0.05 +
-                 0.93*0.15 + 0.91*0.15 + 0.88*0.10 + 0.85*0.05 +
-                 0.90*0.10 + 0.87*0.03 + 0.86*0.01 + 0.84*0.01
-
-      # POPULATION-RELATIVE SCORING
-      population_analysis:
-        # Compare to all Gen 3 data analysts
-        population_size: 250
-        percentile_rank: 88  # Top 12%
-
-        # Breakdown by metric
-        metric_percentiles:
-          speed: 75
-          accuracy: 92
-          efficiency: 70
-          adaptability: 85
-          statistical_rigor: 95  # Elite
-          model_accuracy: 90
-          interpretability: 85
-          robustness: 78
-          insight_quality: 88
-          visualization_quality: 82
-          token_efficiency: 68
-          scalability: 65
-
-        # Elite status (top 10%) in which metrics?
-        elite_metrics:
-          - statistical_rigor   # 95th percentile
-          - accuracy            # 92nd percentile
-          - model_accuracy      # 90th percentile
-
-      # PARETO FRONTIER ANALYSIS
-      pareto_analysis:
-        # Multi-objective optimization: accuracy vs efficiency
-        objectives:
-          - name: accuracy
-            value: 0.92
-            maximize: true
-          - name: efficiency
-            value: 0.86
-            maximize: true
-
-        # Is this agent Pareto optimal?
-        pareto_optimal: false  # Trade-off: could be more efficient
-
-        # Pareto frontier agents (dominating solutions)
-        dominated_by:
-          - did: "did:ossa:gen3-pareto-1"
-            accuracy: 0.94
-            efficiency: 0.88
-            note: "Dominates on both objectives"
-
-        # Agents dominated by this one
-        dominates:
-          - did: "did:ossa:gen2-parent-statistical-analyst"
-            accuracy: 0.88
-            efficiency: 0.82
-          - did: "did:ossa:gen2-parent-predictive-modeler"
-            accuracy: 0.90
-            efficiency: 0.80
-
-      # EVALUATION CONTEXT
-      evaluation_context:
-        dataset: "Kaggle-Competition-Suite-2026"
-        task_count: 100
-        task_types:
-          - regression
-          - classification
-          - clustering
-          - time_series_forecasting
-          - anomaly_detection
-        evaluation_period: 14 days
-        baseline_agent: "did:ossa:gen0-descriptive-stats"
-        validation_strategy: k-fold cross-validation (k=5)
-
-      # TOURNAMENT SELECTION HISTORY
-      selection_history:
-        tournament_size: 5
-        tournaments_won: 3
-        tournaments_participated: 8
-        selection_pressure: medium  # 5 competitors per tournament
-
-        # Tournament results
-        tournaments:
-          - tournament_id: "t-2026-01-20-001"
-            competitors:
-              - "did:ossa:gen2-candidate-1"
-              - "did:ossa:gen2-candidate-2"
-              - "did:ossa:gen2-candidate-3"
-              - "did:ossa:gen2-candidate-4"
-              - "did:ossa:gen2-parent-statistical-analyst"  # Winner
-            winner: "did:ossa:gen2-parent-statistical-analyst"
-            selection_metric: aggregate_fitness
-
-          - tournament_id: "t-2026-01-20-002"
-            competitors:
-              - "did:ossa:gen2-candidate-5"
-              - "did:ossa:gen2-candidate-6"
-              - "did:ossa:gen2-candidate-7"
-              - "did:ossa:gen2-candidate-8"
-              - "did:ossa:gen2-parent-predictive-modeler"  # Winner
-            winner: "did:ossa:gen2-parent-predictive-modeler"
-            selection_metric: aggregate_fitness
-
-    # BREEDING ELIGIBILITY
-    breeding_eligibility:
-      min_fitness_threshold: 0.7
-      max_generation: 10
-      eligible: true
-
-      # Fitness-based criteria
-      fitness_criteria:
-        min_aggregate_score: 0.7
-        min_accuracy: 0.75
-        min_custom_metric_average: 0.70
-        all_metrics_above: 0.60  # No metric below this floor
-
-      # Population-relative criteria
-      population_criteria:
-        min_percentile_rank: 60   # Top 40%
-        min_elite_metrics: 1      # At least 1 metric in top 10%
-
-      # Eligibility check
-      criteria_met:
-        fitness_threshold: true   # 0.89 >= 0.70
-        generation_limit: true    # 3 < 10
-        accuracy_floor: true      # 0.92 >= 0.75
-        percentile_rank: true     # 88 >= 60
-        elite_metrics: true       # 3 >= 1
-
-      # Breeding recommendation
-      recommendation: "Highly suitable for breeding (top tier Gen 3)"
-
-  # Lifecycle
-  lifecycle_stages:
-    current_stage: mature
-
-    birth:
-      timestamp: "2026-01-20T10:00:00Z"
-      birth_type: bred
-      creator_did: "did:ossa:fitness-lab-coordinator"
-
-    growth:
-      tasks_completed: 3250
-      skills_acquired:
-        - advanced_regression
-        - ensemble_methods
-        - feature_engineering
-        - streaming_analytics
-      mentors:
-        - "did:ossa:data-science-mentor"
-
-    career:
-      current_role: senior_data_analyst
-      promotions:
-        - from_role: junior_analyst
-          to_role: mid_analyst
-          timestamp: "2026-01-22T00:00:00Z"
-          reason: "Completed 1000 analyses with 90%+ accuracy"
-        - from_role: mid_analyst
-          to_role: senior_data_analyst
-          timestamp: "2026-01-26T00:00:00Z"
-          reason: "Elite statistical rigor (95th percentile)"
-
-    retirement:
-      eligible: false
-      criteria:
-        min_age_hours: 8760
-        min_tasks: 10000
-        max_fitness: 0.5
-
-spec:
-  type: worker
-  description: |
-    Fitness-optimized data analysis agent bred through tournament selection.
-    Demonstrates comprehensive multi-dimensional fitness evaluation and
-    population-relative performance scoring.
-
-  role: |
-    Perform statistical analysis, predictive modeling, and data visualization.
-    Prioritize statistical rigor and interpretability while maintaining
-    computational efficiency.
-
-  capabilities:
-    - name: analyze_data
-      description: Statistical analysis and predictive modeling
-      input_schema:
-        type: object
-        required:
-          - dataset
-          - analysis_type
-        properties:
-          dataset:
-            type: string
-            description: Dataset identifier or URL
-          analysis_type:
-            type: string
-            enum:
-              - descriptive
-              - inferential
-              - predictive
-              - exploratory
-              - confirmatory
-          target_variable:
-            type: string
-            description: Dependent variable (for predictive tasks)
-
-      output_schema:
-        type: object
-        properties:
-          insights:
-            type: array
-            items:
-              type: object
-              properties:
-                insight:
-                  type: string
-                confidence:
-                  type: number
-                statistical_significance:
-                  type: number
-                business_impact:
-                  type: string
-          models:
-            type: array
-            items:
-              type: object
-              properties:
-                model_type:
-                  type: string
-                performance_metrics:
-                  type: object
-                feature_importance:
-                  type: array
-          visualizations:
-            type: array
-            items:
-              type: object
-              properties:
-                chart_type:
-                  type: string
-                data_url:
-                  type: string
-
-  runtime:
-    model: claude-sonnet-4-5
-    temperature: 0.3
-    max_tokens: 12000
-
-  tools:
-    - type: function
-      name: statistical_tests
-      description: Hypothesis testing, ANOVA, chi-square, etc.
-
-    - type: function
-      name: machine_learning
-      description: Scikit-learn, XGBoost, LightGBM models
-
-    - type: function
-      name: data_visualization
-      description: Matplotlib, Seaborn, Plotly charts
-
-  autonomy:
-    level: assisted
-    approval_required:
-      - deploy_model_to_production
-    allowed_actions:
-      - run_analysis
-      - generate_insights
-      - create_visualizations
-
-  observability:
-    enabled: true
-    metrics:
-      track_tokens: true
-      track_latency: true
-      track_accuracy: true
-      track_model_performance: true
-
-# SELECTION STRATEGY COMPARISON
-# ==============================
-# 1. Tournament Selection (used here):
-#    - Pros: Maintains diversity, adjustable selection pressure
-#    - Cons: May miss global optimum
-#    - Best for: Ongoing evolution with exploration
-#
-# 2. Roulette Wheel (fitness-proportionate):
-#    - Pros: Probabilistic, prevents premature convergence
-#    - Cons: Weak agents still have small chance
-#    - Best for: Early generations with high variance
-#
-# 3. Elite Selection:
-#    - Pros: Guarantees best agents propagate
-#    - Cons: Genetic bottleneck, loss of diversity
-#    - Best for: Final optimization, exploitation phase
-#
-# 4. Rank-based Selection:
-#    - Pros: Reduces selection pressure from outliers
-#    - Cons: Ignores absolute fitness differences
-#    - Best for: Populations with extreme fitness variance
-
-# PARETO FRONTIER EXPLANATION
-# ============================
-# Agent is NOT Pareto optimal because:
-# - Accuracy: 0.92, Efficiency: 0.86
-# - Dominated by: did:ossa:gen3-pareto-1 (0.94, 0.88)
-# - To reach Pareto frontier, need to improve either:
-#   a) Accuracy to 0.94+ while maintaining efficiency, OR
-#   b) Efficiency to 0.88+ while maintaining accuracy
-# - Trade-off accepted for better interpretability (0.88)