@blamechris/repo-memory 0.5.0 → 0.8.0

package/README.md

@@ -62,20 +62,39 @@ The savings compound fast. An agent exploring a project touches the same files 3
 
 ## Tools
 
+Tools are organized into **groups**. `navigation` and `summaries` are **on by default** — together they deliver the core "understand the repo without re-reading" loop. `tasks` and `telemetry` are **off by default** (niche/meta features; each MCP tool adds ~100 tokens/turn, so the default surface stays lean). Toggle any group in `.repo-memory.json` (see [Configuration](#configuration)).
+
+**Navigation** — always on:
+
 | Tool | Description |
 |------|-------------|
-| `get_file_summary` | Cached file summary (exports, imports, purpose) |
-| `batch_file_summaries` | Get summaries for multiple files at once |
-| `get_changed_files` | Files changed since last check |
 | `get_project_map` | Structural overview of project |
-| `search_by_purpose` | Search files by purpose/exports keywords |
 | `get_related_files` | Find related files ranked by relevance |
 | `get_dependency_graph` | File dependency relationships |
-| `create_task` / `get_task_context` / `mark_explored` | Track investigation progress across turns |
-| `get_token_report` | Token usage and savings report |
+| `get_changed_files` | Files changed since last check |
+
+**Summaries** — on by default (the core feature); disable with `"tools": { "summaries": false }`:
+
+| Tool | Description |
+|------|-------------|
+| `get_file_summary` | Cached file summary (exports, imports, purpose) |
+| `batch_file_summaries` | Get summaries for multiple files at once |
+| `search_by_purpose` | Search files by purpose/exports keywords |
 | `force_reread` | Force fresh summary generation |
 | `invalidate` | Clear cache entries |
 
+**Tasks** — off by default; enable with `"tools": { "tasks": true }`:
+
+| Tool | Description |
+|------|-------------|
+| `create_task` / `get_task_context` / `mark_explored` | Track investigation progress across turns |
+
+**Telemetry** — off by default; enable with `"tools": { "telemetry": true }`:
+
+| Tool | Description |
+|------|-------------|
+| `get_token_report` | Token usage and savings report |
+
 ## Token Savings Tracking
 
 repo-memory tracks every cache interaction so you can measure exactly how many tokens you're saving. Call `get_token_report` at any time to see your stats.
@@ -163,11 +182,28 @@ Create a `.repo-memory.json` in your project root to customize behavior:
   "ignore": ["dist", "node_modules", "*.generated.ts"],
   "maxFiles": 5000,
   "gc": {
-    "cacheMaxAgeDays": 30
+    "cacheMaxAgeDays": 30,
+    "taskMaxAgeDays": 30,
+    "telemetryMaxAgeDays": 90
+  },
+  "tools": {
+    "tasks": true,
+    "telemetry": true
   }
 }
 ```
 
+The `tools` block toggles tool groups. `navigation` and `summaries` are **on by default** (set `"summaries": false` to drop the summary tools); `tasks` and `telemetry` are **off by default** (set them to `true` to enable).
+
+The `gc` block controls garbage collection, which runs automatically on server startup:
+- `cacheMaxAgeDays` — remove cache entries not checked in N days (default: 30)
+- `taskMaxAgeDays` — remove completed/archived tasks not updated in N days (default: 30)
+- `telemetryMaxAgeDays` — remove telemetry events older than N days (default: 90)
+
+GC also removes cache entries for deleted files and orphaned import records, regardless of age.
+
+Config validation is per-key: an invalid value is skipped with a warning on stderr while the remaining valid keys still apply. Only a file that can't be read or parsed as JSON falls back entirely to built-in defaults.
+
 ## Language Support
 
 Summaries are extracted via regex analysis. Supported languages:

package/dist/config.d.ts

@@ -1,3 +1,8 @@
+export interface ToolGroupConfig {
+    summaries?: boolean;
+    tasks?: boolean;
+    telemetry?: boolean;
+}
 export interface RepoMemoryConfig {
     ignore?: string[];
     maxFiles?: number;
@@ -6,6 +11,7 @@ export interface RepoMemoryConfig {
         taskMaxAgeDays?: number;
         telemetryMaxAgeDays?: number;
     };
+    tools?: ToolGroupConfig;
 }
 export declare function loadConfig(projectRoot: string): RepoMemoryConfig;
 export declare function clearConfigCache(): void;

package/dist/config.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"config.d.ts","sourceRoot":"","sources":["../src/config.ts"],"names":[],"mappings":"AAKA,MAAM,WAAW,eAAe;IAC9B,SAAS,CAAC,EAAE,OAAO,CAAC;IACpB,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,SAAS,CAAC,EAAE,OAAO,CAAC;CACrB;AAED,MAAM,WAAW,gBAAgB;IAC/B,MAAM,CAAC,EAAE,MAAM,EAAE,CAAC;IAClB,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,EAAE,CAAC,EAAE;QACH,eAAe,CAAC,EAAE,MAAM,CAAC;QACzB,cAAc,CAAC,EAAE,MAAM,CAAC;QACxB,mBAAmB,CAAC,EAAE,MAAM,CAAC;KAC9B,CAAC;IACF,KAAK,CAAC,EAAE,eAAe,CAAC;CACzB;AAQD,wBAAgB,UAAU,CAAC,WAAW,EAAE,MAAM,GAAG,gBAAgB,CAqBhE;AAyED,wBAAgB,gBAAgB,IAAI,IAAI,CAEvC"}

package/dist/config.js

@@ -2,6 +2,9 @@ import { readFileSync, existsSync } from 'fs';
 import { join } from 'path';
 const CONFIG_FILENAME = '.repo-memory.json';
 const configCache = new Map();
+function warn(message) {
+    process.stderr.write(`Warning: ${CONFIG_FILENAME}: ${message}\n`);
+}
 export function loadConfig(projectRoot) {
     const cached = configCache.get(projectRoot);
     if (cached)
@@ -11,47 +14,86 @@ export function loadConfig(projectRoot) {
     if (existsSync(configPath)) {
         try {
             const raw = readFileSync(configPath, 'utf-8');
-            const parsed = JSON.parse(raw);
-            config = validateConfig(parsed);
+            config = validateConfig(JSON.parse(raw));
         }
         catch (err) {
-            process.stderr.write(`Warning: failed to load ${CONFIG_FILENAME}: ${err instanceof Error ? err.message : String(err)}\n`);
+            // Reached only if the file can't be read (IO/permissions) or parsed —
+            // validateConfig never throws, it skips invalid keys. Either way, fall
+            // back to built-in defaults.
+            warn(`failed to load: ${err instanceof Error ? err.message : String(err)}`);
         }
     }
     configCache.set(projectRoot, config);
     return config;
 }
+// Validate per key: an invalid key is skipped with a warning and the valid keys
+// are still applied, rather than discarding the whole config on one bad value.
+// (A non-object root, or a non-object gc/tools, drops just that scope.)
 function validateConfig(raw) {
+    const config = {};
     if (typeof raw !== 'object' || raw === null || Array.isArray(raw)) {
-        throw new Error('Config must be a JSON object');
+        warn('must be a JSON object; using defaults');
+        return config;
     }
     const obj = raw;
-    const config = {};
     if ('ignore' in obj) {
-        if (!Array.isArray(obj.ignore) || !obj.ignore.every((v) => typeof v === 'string')) {
-            throw new Error('"ignore" must be an array of strings');
+        if (Array.isArray(obj.ignore) && obj.ignore.every((v) => typeof v === 'string')) {
+            config.ignore = obj.ignore;
+        }
+        else {
+            warn('"ignore" must be an array of strings; ignoring it');
         }
-        config.ignore = obj.ignore;
     }
     if ('maxFiles' in obj) {
-        if (typeof obj.maxFiles !== 'number' || obj.maxFiles < 1) {
-            throw new Error('"maxFiles" must be a positive number');
+        if (typeof obj.maxFiles === 'number' && obj.maxFiles >= 1) {
+            config.maxFiles = obj.maxFiles;
+        }
+        else {
+            warn('"maxFiles" must be a positive number; ignoring it');
         }
-        config.maxFiles = obj.maxFiles;
     }
     if ('gc' in obj) {
-        if (typeof obj.gc !== 'object' || obj.gc === null || Array.isArray(obj.gc)) {
-            throw new Error('"gc" must be an object');
-        }
-        const gc = obj.gc;
-        config.gc = {};
-        for (const key of ['cacheMaxAgeDays', 'taskMaxAgeDays', 'telemetryMaxAgeDays']) {
-            if (key in gc) {
-                if (typeof gc[key] !== 'number' || gc[key] < 1) {
-                    throw new Error(`"gc.${key}" must be a positive number`);
+        if (typeof obj.gc === 'object' && obj.gc !== null && !Array.isArray(obj.gc)) {
+            const gc = obj.gc;
+            const out = {};
+            for (const key of ['cacheMaxAgeDays', 'taskMaxAgeDays', 'telemetryMaxAgeDays']) {
+                if (key in gc) {
+                    const value = gc[key];
+                    if (typeof value === 'number' && value >= 1) {
+                        out[key] = value;
+                    }
+                    else {
+                        warn(`"gc.${key}" must be a positive number; ignoring it`);
+                    }
                 }
-                config.gc[key] = gc[key];
             }
+            if (Object.keys(out).length > 0)
+                config.gc = out;
+        }
+        else {
+            warn('"gc" must be an object; ignoring it');
+        }
+    }
+    if ('tools' in obj) {
+        if (typeof obj.tools === 'object' && obj.tools !== null && !Array.isArray(obj.tools)) {
+            const tools = obj.tools;
+            const out = {};
+            for (const key of ['summaries', 'tasks', 'telemetry']) {
+                if (key in tools) {
+                    const value = tools[key];
+                    if (typeof value === 'boolean') {
+                        out[key] = value;
+                    }
+                    else {
+                        warn(`"tools.${key}" must be a boolean; ignoring it`);
+                    }
+                }
+            }
+            if (Object.keys(out).length > 0)
+                config.tools = out;
+        }
+        else {
+            warn('"tools" must be an object; ignoring it');
         }
     }
     return config;

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@@ -1 +1 @@
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+{"version":3,"file":"imports.d.ts","sourceRoot":"","sources":["../../src/indexer/imports.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,aAAa,CAAC;AAqL7C,wBAAgB,oBAAoB,CAClC,QAAQ,EAAE,MAAM,EAChB,QAAQ,EAAE,MAAM,EAChB,WAAW,EAAE,MAAM,GAClB,SAAS,EAAE,CA0Eb;AA6BD,wBAAgB,gBAAgB,CAC9B,QAAQ,EAAE,MAAM,EAChB,QAAQ,EAAE,MAAM,EAChB,YAAY,EAAE,MAAM,GACnB,SAAS,EAAE,CA8Cb;AAgDD,wBAAgB,kBAAkB,CAChC,QAAQ,EAAE,MAAM,EAChB,QAAQ,EAAE,MAAM,EAChB,WAAW,EAAE,MAAM,GAClB,SAAS,EAAE,CAuDb;AAQD,wBAAgB,cAAc,CAC5B,QAAQ,EAAE,MAAM,EAChB,QAAQ,EAAE,MAAM,EAChB,WAAW,EAAE,MAAM,GAClB,SAAS,EAAE,CAiBb"}

package/dist/indexer/imports.js

@@ -1,4 +1,5 @@
 import { dirname, join, normalize, relative } from 'path';
+import { toPosix } from '../utils/posix-path.js';
 function isRelativeImport(specifier) {
     return specifier === '.' || specifier === '..' ||
         specifier.startsWith('./') || specifier.startsWith('../');
@@ -9,7 +10,7 @@ function resolveTarget(importSpecifier, filePath, projectRoot) {
     }
     const fileDir = dirname(join(projectRoot, filePath));
     const resolved = normalize(join(fileDir, importSpecifier));
-    return relative(projectRoot, resolved);
+    return toPosix(relative(projectRoot, resolved));
 }
 function getExtension(filePath) {
     const dot = filePath.lastIndexOf('.');

package/dist/indexer/imports.js.map

@@ -1 +1 @@
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package/dist/indexer/project-map.d.ts

@@ -4,9 +4,7 @@ export interface DirectoryNode {
     files: Array<{
         name: string;
         purpose: string;
-        confidence: string;
         size: number;
-        lastModified: number;
     }>;
     children: DirectoryNode[];
     fileCount: number;

package/dist/indexer/project-map.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"project-map.d.ts","sourceRoot":"","sources":["../../src/indexer/project-map.ts"],"names":[],"mappings":"AAQA,MAAM,WAAW,aAAa;IAC5B,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;IACb,KAAK,EAAE,KAAK,CAAC;QACX,IAAI,EAAE,MAAM,CAAC;QACb,OAAO,EAAE,MAAM,CAAC;QAChB,UAAU,EAAE,MAAM,CAAC;QACnB,IAAI,EAAE,MAAM,CAAC;QACb,YAAY,EAAE,MAAM,CAAC;KACtB,CAAC,CAAC;IACH,QAAQ,EAAE,aAAa,EAAE,CAAC;IAC1B,SAAS,EAAE,MAAM,CAAC;CACnB;AAED,MAAM,WAAW,UAAU;IACzB,IAAI,EAAE,aAAa,CAAC;IACpB,WAAW,EAAE,MAAM,EAAE,CAAC;IACtB,UAAU,EAAE,MAAM,CAAC;IACnB,iBAAiB,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;CAC3C;AA8ID,wBAAsB,eAAe,CACnC,WAAW,EAAE,MAAM,EACnB,OAAO,CAAC,EAAE;IAAE,KAAK,CAAC,EAAE,MAAM,CAAA;CAAE,GAC3B,OAAO,CAAC,UAAU,CAAC,CAWrB"}
+{"version":3,"file":"project-map.d.ts","sourceRoot":"","sources":["../../src/indexer/project-map.ts"],"names":[],"mappings":"AAQA,MAAM,WAAW,aAAa;IAC5B,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;IACb,KAAK,EAAE,KAAK,CAAC;QACX,IAAI,EAAE,MAAM,CAAC;QACb,OAAO,EAAE,MAAM,CAAC;QAChB,IAAI,EAAE,MAAM,CAAC;KACd,CAAC,CAAC;IACH,QAAQ,EAAE,aAAa,EAAE,CAAC;IAC1B,SAAS,EAAE,MAAM,CAAC;CACnB;AAED,MAAM,WAAW,UAAU;IACzB,IAAI,EAAE,aAAa,CAAC;IACpB,WAAW,EAAE,MAAM,EAAE,CAAC;IACtB,UAAU,EAAE,MAAM,CAAC;IACnB,iBAAiB,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;CAC3C;AA+ID,wBAAsB,eAAe,CACnC,WAAW,EAAE,MAAM,EACnB,OAAO,CAAC,EAAE;IAAE,KAAK,CAAC,EAAE,MAAM,CAAA;CAAE,GAC3B,OAAO,CAAC,UAAU,CAAC,CAWrB"}

package/dist/indexer/project-map.js

@@ -13,10 +13,10 @@ async function getSummaries(projectRoot, files) {
         if (cached?.summary) {
             try {
                 const stats = await stat(absolutePath);
-                entries.push({ relativePath, summary: cached.summary, size: stats.size, lastModified: stats.mtimeMs });
+                entries.push({ relativePath, summary: cached.summary, size: stats.size });
             }
             catch {
-                entries.push({ relativePath, summary: cached.summary, size: 0, lastModified: 0 });
+                entries.push({ relativePath, summary: cached.summary, size: 0 });
             }
             continue;
         }
@@ -31,7 +31,7 @@ async function getSummaries(projectRoot, files) {
         const hash = hashContents(contents);
         cache.setEntry(relativePath, hash, summary);
         const stats = await stat(absolutePath);
-        entries.push({ relativePath, summary, size: stats.size, lastModified: stats.mtimeMs });
+        entries.push({ relativePath, summary, size: stats.size });
     }
     return entries;
 }
@@ -70,17 +70,19 @@ function buildTree(entries, rootName, maxDepth) {
         return node;
     }
     for (const entry of entries) {
+        const name = basename(entry.relativePath);
+        // Zero-byte .gitkeep placeholders carry no information; omit them from the tree.
+        if (name === '.gitkeep' && entry.size === 0)
+            continue;
         const dirPath = dirname(entry.relativePath);
         const depth = dirPath === '.' ? 0 : dirPath.split('/').length;
         const dir = getOrCreateDir(dirPath, depth);
         if (!dir)
             continue;
         dir.files.push({
-            name: basename(entry.relativePath),
+            name,
             purpose: entry.summary.purpose,
-            confidence: entry.summary.confidence,
             size: entry.size,
-            lastModified: entry.lastModified,
         });
     }
     function computeFileCounts(node) {

package/dist/indexer/project-map.js.map

@@ -1 +1 @@
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+{"version":3,"file":"project-map.js","sourceRoot":"","sources":["../../src/indexer/project-map.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,QAAQ,EAAE,IAAI,EAAE,MAAM,kBAAkB,CAAC;AAClD,OAAO,EAAE,IAAI,EAAE,OAAO,EAAE,QAAQ,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAC7D,OAAO,EAAE,WAAW,EAAE,MAAM,cAAc,CAAC;AAC3C,OAAO,EAAE,aAAa,EAAE,MAAM,iBAAiB,CAAC;AAChD,OAAO,EAAE,UAAU,EAAE,MAAM,mBAAmB,CAAC;AAC/C,OAAO,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAC;AA4BhD,KAAK,UAAU,YAAY,CACzB,WAAmB,EACnB,KAAe;IAEf,MAAM,KAAK,GAAG,IAAI,UAAU,CAAC,WAAW,CAAC,CAAC;IAC1C,MAAM,OAAO,GAAuB,EAAE,CAAC;IAEvC,KAAK,MAAM,YAAY,IAAI,KAAK,EAAE,CAAC;QACjC,MAAM,YAAY,GAAG,IAAI,CAAC,WAAW,EAAE,YAAY,CAAC,CAAC;QACrD,MAAM,MAAM,GAAG,KAAK,CAAC,QAAQ,CAAC,YAAY,CAAC,CAAC;QAC5C,IAAI,MAAM,EAAE,OAAO,EAAE,CAAC;YACpB,IAAI,CAAC;gBACH,MAAM,KAAK,GAAG,MAAM,IAAI,CAAC,YAAY,CAAC,CAAC;gBACvC,OAAO,CAAC,IAAI,CAAC,EAAE,YAAY,EAAE,OAAO,EAAE,MAAM,CAAC,OAAO,EAAE,IAAI,EAAE,KAAK,CAAC,IAAI,EAAE,CAAC,CAAC;YAC5E,CAAC;YAAC,MAAM,CAAC;gBACP,OAAO,CAAC,IAAI,CAAC,EAAE,YAAY,EAAE,OAAO,EAAE,MAAM,CAAC,OAAO,EAAE,IAAI,EAAE,CAAC,EAAE,CAAC,CAAC;YACnE,CAAC;YACD,SAAS;QACX,CAAC;QAED,IAAI,QAAgB,CAAC;QACrB,IAAI,CAAC;YACH,QAAQ,GAAG,MAAM,QAAQ,CAAC,YAAY,EAAE,OAAO,CAAC,CAAC;QACnD,CAAC;QAAC,MAAM,CAAC;YACP,SAAS;QACX,CAAC;QAED,MAAM,OAAO,GAAG,aAAa,CAAC,YAAY,EAAE,QAAQ,CAAC,CAAC;QACtD,MAAM,IAAI,GAAG,YAAY,CAAC,QAAQ,CAAC,CAAC;QACpC,KAAK,CAAC,QAAQ,CAAC,YAAY,EAAE,IAAI,EAAE,OAAO,CAAC,CAAC;QAC5C,MAAM,KAAK,GAAG,MAAM,IAAI,CAAC,YAAY,CAAC,CAAC;QACvC,OAAO,CAAC,IAAI,CAAC,EAAE,YAAY,EAAE,OAAO,EAAE,IAAI,EAAE,KAAK,CAAC,IAAI,EAAE,CAAC,CAAC;IAC5D,CAAC;IAED,OAAO,OAAO,CAAC;AACjB,CAAC;AAED,SAAS,SAAS,CAChB,OAA2B,EAC3B,QAAgB,EAChB,QAAiB;IAEjB,MAAM,IAAI,GAAkB;QAC1B,IAAI,EAAE,QAAQ;QACd,IAAI,EAAE,GAAG;QACT,KAAK,EAAE,EAAE;QACT,QAAQ,EAAE,EAAE;QACZ,SAAS,EAAE,CAAC;KACb,CAAC;IAEF,MAAM,MAAM,GAAG,IAAI,GAAG,EAAyB,CAAC;IAChD,MAAM,CAAC,GAAG,CAAC,GAAG,EAAE,IAAI,CAAC,CAAC;IAEtB,SAAS,cAAc,CAAC,OAAe,EAAE,YAAoB;QAC3D,IAAI,OAAO,KAAK,GAAG;YAAE,OAAO,IAAI,CAAC;QACjC,IAAI,QAAQ,KAAK,SAAS,IAAI,YAAY,GAAG,QAAQ;YAAE,OAAO,IAAI,CAAC;QAEnE,MAAM,QAAQ,GAAG,MAAM,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;QACrC,IAAI,QAAQ;YAAE,OAAO,QAAQ,CAAC;QAE9B,MAAM,UAAU,GAAG,OAAO,CAAC,OAAO,CAAC,CAAC;QACpC,MAAM,WAAW,GAAG,UAAU,KAAK,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,UAAU,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,MAAM,CAAC;QAC1E,MAAM,MAAM,GAAG,cAAc,CAAC,UAAU,EAAE,WAAW,CAAC,CAAC;QACvD,IAAI,CAAC,MAAM;YAAE,OAAO,IAAI,CAAC;QAEzB,MAAM,IAAI,GAAkB;YAC1B,IAAI,EAAE,QAAQ,CAAC,OAAO,CAAC;YACvB,IAAI,EAAE,OAAO;YACb,KAAK,EAAE,EAAE;YACT,QAAQ,EAAE,EAAE;YACZ,SAAS,EAAE,CAAC;SACb,CAAC;QAEF,MAAM,CAAC,GAAG,CAAC,OAAO,EAAE,IAAI,CAAC,CAAC;QAC1B,MAAM,CAAC,QAAQ,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;QAC3B,OAAO,IAAI,CAAC;IACd,CAAC;IAED,KAAK,MAAM,KAAK,IAAI,OAAO,EAAE,CAAC;QAC5B,MAAM,IAAI,GAAG,QAAQ,CAAC,KAAK,CAAC,YAAY,CAAC,CAAC;QAC1C,iFAAiF;QACjF,IAAI,IAAI,KAAK,UAAU,IAAI,KAAK,CAAC,IAAI,KAAK,CAAC;YAAE,SAAS;QAEtD,MAAM,OAAO,GAAG,OAAO,CAAC,KAAK,CAAC,YAAY,CAAC,CAAC;QAC5C,MAAM,KAAK,GAAG,OAAO,KAAK,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,MAAM,CAAC;QAC9D,MAAM,GAAG,GAAG,cAAc,CAAC,OAAO,EAAE,KAAK,CAAC,CAAC;QAC3C,IAAI,CAAC,GAAG;YAAE,SAAS;QAEnB,GAAG,CAAC,KAAK,CAAC,IAAI,CAAC;YACb,IAAI;YACJ,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,OAAO;YAC9B,IAAI,EAAE,KAAK,CAAC,IAAI;SACjB,CAAC,CAAC;IACL,CAAC;IAED,SAAS,iBAAiB,CAAC,IAAmB;QAC5C,IAAI,KAAK,GAAG,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC;QAC9B,KAAK,MAAM,KAAK,IAAI,IAAI,CAAC,QAAQ,EAAE,CAAC;YAClC,KAAK,IAAI,iBAAiB,CAAC,KAAK,CAAC,CAAC;QACpC,CAAC;QACD,IAAI,CAAC,SAAS,GAAG,KAAK,CAAC;QACvB,OAAO,KAAK,CAAC;IACf,CAAC;IAED,iBAAiB,CAAC,IAAI,CAAC,CAAC;IAExB,SAAS,QAAQ,CAAC,IAAmB;QACnC,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,aAAa,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC;QACxD,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,aAAa,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC;QAC3D,KAAK,MAAM,KAAK,IAAI,IAAI,CAAC,QAAQ,EAAE,CAAC;YAClC,QAAQ,CAAC,KAAK,CAAC,CAAC;QAClB,CAAC;IACH,CAAC;IAED,QAAQ,CAAC,IAAI,CAAC,CAAC;IAEf,OAAO,IAAI,CAAC;AACd,CAAC;AAED,SAAS,wBAAwB,CAAC,KAAe;IAC/C,MAAM,SAAS,GAA2B,EAAE,CAAC;IAC7C,KAAK,MAAM,IAAI,IAAI,KAAK,EAAE,CAAC;QACzB,MAAM,GAAG,GAAG,OAAO,CAAC,IAAI,CAAC,IAAI,gBAAgB,CAAC;QAC9C,SAAS,CAAC,GAAG,CAAC,GAAG,CAAC,SAAS,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC;IAC7C,CAAC;IACD,OAAO,SAAS,CAAC;AACnB,CAAC;AAED,SAAS,eAAe,CAAC,OAA2B;IAClD,OAAO,OAAO;SACX,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC,OAAO,KAAK,aAAa,CAAC;SAClD,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,YAAY,CAAC;SAC1B,IAAI,EAAE,CAAC;AACZ,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,eAAe,CACnC,WAAmB,EACnB,OAA4B;IAE5B,MAAM,KAAK,GAAG,MAAM,WAAW,CAAC,WAAW,CAAC,CAAC;IAC7C,MAAM,OAAO,GAAG,MAAM,YAAY,CAAC,WAAW,EAAE,KAAK,CAAC,CAAC;IACvD,MAAM,QAAQ,GAAG,QAAQ,CAAC,WAAW,CAAC,CAAC;IAEvC,OAAO;QACL,IAAI,EAAE,SAAS,CAAC,OAAO,EAAE,QAAQ,EAAE,OAAO,EAAE,KAAK,CAAC;QAClD,WAAW,EAAE,eAAe,CAAC,OAAO,CAAC;QACrC,UAAU,EAAE,KAAK,CAAC,MAAM;QACxB,iBAAiB,EAAE,wBAAwB,CAAC,KAAK,CAAC;KACnD,CAAC;AACJ,CAAC"}

package/dist/indexer/scanner.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"scanner.d.ts","sourceRoot":"","sources":["../../src/indexer/scanner.ts"],"names":[],"mappings":"AAQA,MAAM,WAAW,WAAW;IAC1B,OAAO,CAAC,EAAE,MAAM,EAAE,CAAC;IACnB,OAAO,CAAC,EAAE,MAAM,EAAE,CAAC;IACnB,QAAQ,CAAC,EAAE,MAAM,CAAC;CACnB;AA2GD,wBAAsB,WAAW,CAC/B,OAAO,EAAE,MAAM,EACf,OAAO,CAAC,EAAE,WAAW,GACpB,OAAO,CAAC,MAAM,EAAE,CAAC,CAwBnB"}
+{"version":3,"file":"scanner.d.ts","sourceRoot":"","sources":["../../src/indexer/scanner.ts"],"names":[],"mappings":"AASA,MAAM,WAAW,WAAW;IAC1B,OAAO,CAAC,EAAE,MAAM,EAAE,CAAC;IACnB,OAAO,CAAC,EAAE,MAAM,EAAE,CAAC;IACnB,QAAQ,CAAC,EAAE,MAAM,CAAC;CACnB;AA2GD,wBAAsB,WAAW,CAC/B,OAAO,EAAE,MAAM,EACf,OAAO,CAAC,EAAE,WAAW,GACpB,OAAO,CAAC,MAAM,EAAE,CAAC,CAwBnB"}

package/dist/indexer/scanner.js

@@ -3,6 +3,7 @@ import { readdir } from 'fs/promises';
 import { join, relative } from 'path';
 import { promisify } from 'util';
 import { loadConfig } from '../config.js';
+import { toPosix } from '../utils/posix-path.js';
 const execFileAsync = promisify(execFile);
 const BINARY_EXTENSIONS = new Set([
     '.png', '.jpg', '.jpeg', '.gif', '.ico', '.bmp', '.webp',
@@ -86,7 +87,7 @@ async function scanWithFs(rootDir) {
                 await walk(fullPath);
             }
             else if (entry.isFile()) {
-                files.push(relative(rootDir, fullPath));
+                files.push(toPosix(relative(rootDir, fullPath)));
             }
         }
     }

package/dist/indexer/scanner.js.map

@@ -1 +1 @@
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package/dist/server.js

@@ -1,6 +1,9 @@
 #!/usr/bin/env node
 import { McpServer } from '@modelcontextprotocol/sdk/server/mcp.js';
 import { StdioServerTransport } from '@modelcontextprotocol/sdk/server/stdio.js';
+import { readFileSync } from 'fs';
+import { fileURLToPath } from 'url';
+import { dirname, join } from 'path';
 import { z } from 'zod';
 import { getFileSummary } from './tools/get-file-summary.js';
 import { getChangedFiles } from './tools/get-changed-files.js';
@@ -16,232 +19,262 @@ import { searchByPurpose } from './tools/search-by-purpose.js';
 import { runGC } from './cache/gc.js';
 import { SessionManager } from './memory/session.js';
 import { loadConfig } from './config.js';
+// Read the version from package.json so the MCP serverInfo never drifts from the
+// published version. dist/server.js -> ../package.json; src/server.ts -> ../package.json.
+const pkg = JSON.parse(readFileSync(join(dirname(fileURLToPath(import.meta.url)), '..', 'package.json'), 'utf-8'));
 const server = new McpServer({
     name: 'repo-memory',
-    version: '0.5.0',
+    version: pkg.version,
 });
-server.registerTool('get_file_summary', {
-    title: 'Get File Summary',
-    description: 'Returns a cached summary of a file. If the file has not changed since last read, returns the cached summary without re-reading. Use this instead of reading files directly to save tokens.',
-    inputSchema: {
-        path: z.string().describe('File path relative to project root'),
-    },
-}, async ({ path }) => {
-    try {
+function registerTools(server, config) {
+    // === NAVIGATION GROUP (always on) ===
+    server.registerTool('get_project_map', {
+        title: 'Get Project Map',
+        description: 'Returns a structural overview of the project including directory tree, entry points, and key modules.',
+        inputSchema: {
+            project_root: z.string().describe('Absolute path to the project root'),
+            depth: z.number().optional().describe('Max directory depth to include'),
+        },
+    }, async ({ project_root, depth }) => {
+        const projectMap = await getProjectMap(project_root, depth);
+        return {
+            content: [{ type: 'text', text: JSON.stringify(projectMap) }],
+        };
+    });
+    server.registerTool('get_related_files', {
+        title: 'Get Related Files',
+        description: 'Returns files related to the given file, ranked by dependency proximity and relevance. Useful for finding what else to look at when exploring a file.',
+        inputSchema: {
+            path: z.string().describe('File path relative to project root'),
+            limit: z.number().optional().describe('Max results (default: 10)'),
+            task_id: z.string().optional().describe('Task ID for context-aware ranking'),
+        },
+    }, async ({ path, limit, task_id }) => {
         const projectRoot = process.cwd();
-        const result = await getFileSummary(projectRoot, path);
+        const result = await getRelatedFiles(projectRoot, path, { limit, taskId: task_id });
         return {
             content: [{ type: 'text', text: JSON.stringify(result) }],
         };
-    }
-    catch (error) {
-        const message = error instanceof Error ? error.message : String(error);
-        const isNotFound = error instanceof Error && 'code' in error && error.code === 'ENOENT';
+    });
+    server.registerTool('get_dependency_graph', {
+        title: 'Get Dependency Graph',
+        description: 'Returns dependency graph information. If a path is given, returns its dependencies/dependents. If no path, returns a summary of the most connected files.',
+        inputSchema: {
+            path: z.string().optional().describe('File path to query, or omit for full graph summary'),
+            direction: z
+                .enum(['dependencies', 'dependents', 'both'])
+                .optional()
+                .describe('Query direction (default: both)'),
+            depth: z.number().optional().describe('Max traversal depth'),
+            symbol: z.string().optional().describe('Filter edges by import specifier (e.g., "UserService")'),
+        },
+    }, async ({ path, direction, depth, symbol }) => {
+        const projectRoot = process.cwd();
+        const result = await getDependencyGraphTool(projectRoot, path, direction, depth, symbol);
+        return {
+            content: [{ type: 'text', text: JSON.stringify(result) }],
+        };
+    });
+    server.registerTool('get_changed_files', {
+        title: 'Get Changed Files',
+        description: 'Returns files that have changed since the last check. Compares current file hashes against cached hashes.',
+        inputSchema: {
+            since: z.string().optional().describe('ISO timestamp or "last_check"'),
+        },
+    }, async ({ since }) => {
+        const projectRoot = process.cwd();
+        const result = await getChangedFiles(projectRoot, since);
         return {
-            content: [
-                {
-                    type: 'text',
-                    text: JSON.stringify({
-                        error: isNotFound ? 'file_not_found' : 'internal_error',
-                        message,
-                        path,
-                    }),
-                },
-            ],
-            isError: true,
+            content: [{ type: 'text', text: JSON.stringify(result) }],
         };
+    });
+    // === SUMMARIES GROUP (on by default — the core feature; disable with "tools": { "summaries": false }) ===
+    if (config.tools?.summaries !== false) {
+        server.registerTool('get_file_summary', {
+            title: 'Get File Summary',
+            description: 'Returns a cached summary of a file. If the file has not changed since last read, returns the cached summary without re-reading. Use this instead of reading files directly to save tokens.',
+            inputSchema: {
+                path: z.string().describe('File path relative to project root'),
+            },
+        }, async ({ path }) => {
+            try {
+                const projectRoot = process.cwd();
+                const result = await getFileSummary(projectRoot, path);
+                return {
+                    content: [{ type: 'text', text: JSON.stringify(result) }],
+                };
+            }
+            catch (error) {
+                const message = error instanceof Error ? error.message : String(error);
+                const isNotFound = error instanceof Error && 'code' in error && error.code === 'ENOENT';
+                return {
+                    content: [
+                        {
+                            type: 'text',
+                            text: JSON.stringify({
+                                error: isNotFound ? 'file_not_found' : 'internal_error',
+                                message,
+                                path,
+                            }),
+                        },
+                    ],
+                    isError: true,
+                };
+            }
+        });
+        server.registerTool('batch_file_summaries', {
+            title: 'Batch File Summaries',
+            description: 'Get cached summaries for multiple files in one call. More efficient than calling get_file_summary repeatedly.',
+            inputSchema: {
+                paths: z.array(z.string()).describe('Array of file paths relative to project root'),
+            },
+        }, async ({ paths }) => {
+            const projectRoot = process.cwd();
+            const result = await batchFileSummaries(projectRoot, paths);
+            return {
+                content: [{ type: 'text', text: JSON.stringify(result) }],
+            };
+        });
+        server.registerTool('force_reread', {
+            title: 'Force Re-read',
+            description: 'Re-reads a file from disk, generates a fresh summary, and updates the cache. Use when you know a file has changed or want guaranteed-fresh data.',
+            inputSchema: {
+                path: z.string().describe('File path relative to project root'),
+            },
+        }, async ({ path }) => {
+            const projectRoot = process.cwd();
+            const result = await forceReread(projectRoot, path);
+            return {
+                content: [{ type: 'text', text: JSON.stringify(result) }],
+            };
+        });
+        server.registerTool('search_by_purpose', {
+            title: 'Search By Purpose',
+            description: 'Search cached file summaries by keyword. Matches against file purpose, exports, and declarations. Requires files to have been previously summarized. Optionally scope to a directory with pathPrefix.',
+            inputSchema: {
+                query: z.string().describe('Search keywords (e.g., "database", "auth middleware", "validation")'),
+                limit: z.number().optional().describe('Max results (default: 20)'),
+                pathPrefix: z.string().optional().describe('Restrict results to files at or under this path (e.g., "src/cache")'),
+            },
+        }, async ({ query, limit, pathPrefix }) => {
+            const projectRoot = process.cwd();
+            const result = searchByPurpose(projectRoot, query, limit, pathPrefix);
+            return {
+                content: [{ type: 'text', text: JSON.stringify(result) }],
+            };
+        });
+        server.registerTool('invalidate', {
+            title: 'Invalidate Cache',
+            description: 'Invalidates cached entries. If a path is provided, only that entry is removed. If no path is provided, all entries are removed.',
+            inputSchema: {
+                path: z.string().optional().describe('File path to invalidate, or omit to invalidate all'),
+            },
+        }, async ({ path }) => {
+            const projectRoot = process.cwd();
+            const result = await invalidateCache(projectRoot, path);
+            return {
+                content: [{ type: 'text', text: JSON.stringify(result) }],
+            };
+        });
     }
-});
-server.registerTool('get_changed_files', {
-    title: 'Get Changed Files',
-    description: 'Returns files that have changed since the last check. Compares current file hashes against cached hashes.',
-    inputSchema: {
-        since: z.string().optional().describe('ISO timestamp or "last_check"'),
-    },
-}, async ({ since }) => {
-    const projectRoot = process.cwd();
-    const result = await getChangedFiles(projectRoot, since);
-    return {
-        content: [{ type: 'text', text: JSON.stringify(result) }],
-    };
-});
-server.registerTool('get_project_map', {
-    title: 'Get Project Map',
-    description: 'Returns a structural overview of the project including directory tree, entry points, and key modules.',
-    inputSchema: {
-        project_root: z.string().describe('Absolute path to the project root'),
-        depth: z.number().optional().describe('Max directory depth to include'),
-    },
-}, async ({ project_root, depth }) => {
-    const projectMap = await getProjectMap(project_root, depth);
-    return {
-        content: [{ type: 'text', text: JSON.stringify(projectMap) }],
-    };
-});
-server.registerTool('force_reread', {
-    title: 'Force Re-read',
-    description: 'Re-reads a file from disk, generates a fresh summary, and updates the cache. Use when you know a file has changed or want guaranteed-fresh data.',
-    inputSchema: {
-        path: z.string().describe('File path relative to project root'),
-    },
-}, async ({ path }) => {
-    const projectRoot = process.cwd();
-    const result = await forceReread(projectRoot, path);
-    return {
-        content: [{ type: 'text', text: JSON.stringify(result) }],
-    };
-});
-server.registerTool('invalidate', {
-    title: 'Invalidate Cache',
-    description: 'Invalidates cached entries. If a path is provided, only that entry is removed. If no path is provided, all entries are removed.',
-    inputSchema: {
-        path: z.string().optional().describe('File path to invalidate, or omit to invalidate all'),
-    },
-}, async ({ path }) => {
-    const projectRoot = process.cwd();
-    const result = await invalidateCache(projectRoot, path);
-    return {
-        content: [{ type: 'text', text: JSON.stringify(result) }],
-    };
-});
-server.registerTool('get_dependency_graph', {
-    title: 'Get Dependency Graph',
-    description: 'Returns dependency graph information. If a path is given, returns its dependencies/dependents. If no path, returns a summary of the most connected files.',
-    inputSchema: {
-        path: z.string().optional().describe('File path to query, or omit for full graph summary'),
-        direction: z
-            .enum(['dependencies', 'dependents', 'both'])
-            .optional()
-            .describe('Query direction (default: both)'),
-        depth: z.number().optional().describe('Max traversal depth'),
-        symbol: z.string().optional().describe('Filter edges by import specifier (e.g., "UserService")'),
-    },
-}, async ({ path, direction, depth, symbol }) => {
-    const projectRoot = process.cwd();
-    const result = await getDependencyGraphTool(projectRoot, path, direction, depth, symbol);
-    return {
-        content: [{ type: 'text', text: JSON.stringify(result) }],
-    };
-});
-server.registerTool('create_task', {
-    title: 'Create Task',
-    description: 'Creates a new investigation task for tracking file exploration.',
-    inputSchema: {
-        name: z.string().describe('Human-readable task name'),
-    },
-}, async ({ name }) => {
-    const projectRoot = process.cwd();
-    const task = createTaskTool(projectRoot, name);
-    return {
-        content: [{ type: 'text', text: JSON.stringify(task) }],
-    };
-});
-server.registerTool('get_task_context', {
-    title: 'Get Task Context',
-    description: 'Returns task state, explored files, and frontier. If no task_id, returns list of all tasks.',
-    inputSchema: {
-        task_id: z.string().optional().describe('Task ID to query, or omit to list all tasks'),
-    },
-}, async ({ task_id }) => {
-    const projectRoot = process.cwd();
-    const result = getTaskContext(projectRoot, task_id);
-    return {
-        content: [{ type: 'text', text: JSON.stringify(result) }],
-    };
-});
-server.registerTool('mark_explored', {
-    title: 'Mark Explored',
-    description: 'Marks a file as explored for a task, with optional status and notes.',
-    inputSchema: {
-        task_id: z.string().describe('Task ID'),
-        path: z.string().describe('File path relative to project root'),
-        status: z
-            .enum(['explored', 'skipped', 'flagged'])
-            .optional()
-            .describe('Exploration status (default: explored)'),
-        notes: z.string().optional().describe('Optional notes about the file'),
-    },
-}, async ({ task_id, path, status, notes }) => {
-    const projectRoot = process.cwd();
-    const result = markExploredTool(projectRoot, task_id, path, status, notes);
-    return {
-        content: [{ type: 'text', text: JSON.stringify(result) }],
-    };
-});
-server.registerTool('get_token_report', {
-    title: 'Get Token Report',
-    description: 'Get aggregated token usage telemetry report showing cache efficiency and token savings',
-    inputSchema: {
-        period: z
-            .enum(['session', 'all', 'last_n_hours'])
-            .optional()
-            .describe('Time period for the report'),
-        hours: z
-            .number()
-            .optional()
-            .describe('Number of hours to look back (only for last_n_hours period)'),
-        session_id: z
-            .string()
-            .optional()
-            .describe('Session ID (only for session period)'),
-        include_diagnostics: z
-            .boolean()
-            .optional()
-            .describe('Include cache health diagnostics'),
-    },
-}, async ({ period, hours, session_id, include_diagnostics }) => {
-    const projectRoot = process.cwd();
-    const report = getTokenReport(projectRoot, period, hours, session_id, include_diagnostics);
-    return {
-        content: [{ type: 'text', text: JSON.stringify(report, null, 2) }],
-    };
-});
-server.registerTool('batch_file_summaries', {
-    title: 'Batch File Summaries',
-    description: 'Get cached summaries for multiple files in one call. More efficient than calling get_file_summary repeatedly.',
-    inputSchema: {
-        paths: z.array(z.string()).describe('Array of file paths relative to project root'),
-    },
-}, async ({ paths }) => {
-    const projectRoot = process.cwd();
-    const result = await batchFileSummaries(projectRoot, paths);
-    return {
-        content: [{ type: 'text', text: JSON.stringify(result) }],
-    };
-});
-server.registerTool('get_related_files', {
-    title: 'Get Related Files',
-    description: 'Returns files related to the given file, ranked by dependency proximity and relevance. Useful for finding what else to look at when exploring a file.',
-    inputSchema: {
-        path: z.string().describe('File path relative to project root'),
-        limit: z.number().optional().describe('Max results (default: 10)'),
-        task_id: z.string().optional().describe('Task ID for context-aware ranking'),
-    },
-}, async ({ path, limit, task_id }) => {
-    const projectRoot = process.cwd();
-    const result = await getRelatedFiles(projectRoot, path, { limit, taskId: task_id });
-    return {
-        content: [{ type: 'text', text: JSON.stringify(result) }],
-    };
-});
-server.registerTool('search_by_purpose', {
-    title: 'Search By Purpose',
-    description: 'Search cached file summaries by keyword. Matches against file purpose, exports, and declarations. Requires files to have been previously summarized.',
-    inputSchema: {
-        query: z.string().describe('Search keywords (e.g., "database", "auth middleware", "validation")'),
-        limit: z.number().optional().describe('Max results (default: 20)'),
-    },
-}, async ({ query, limit }) => {
-    const projectRoot = process.cwd();
-    const result = searchByPurpose(projectRoot, query, limit);
-    return {
-        content: [{ type: 'text', text: JSON.stringify(result) }],
-    };
-});
+    // === TASKS GROUP (off by default) ===
+    if (config.tools?.tasks) {
+        server.registerTool('create_task', {
+            title: 'Create Task',
+            description: 'Creates a new investigation task for tracking file exploration.',
+            inputSchema: {
+                name: z.string().describe('Human-readable task name'),
+            },
+        }, async ({ name }) => {
+            const projectRoot = process.cwd();
+            const task = createTaskTool(projectRoot, name);
+            return {
+                content: [{ type: 'text', text: JSON.stringify(task) }],
+            };
+        });
+        server.registerTool('get_task_context', {
+            title: 'Get Task Context',
+            description: 'Returns task state, explored files, and frontier. If no task_id, returns list of all tasks.',
+            inputSchema: {
+                task_id: z.string().optional().describe('Task ID to query, or omit to list all tasks'),
+            },
+        }, async ({ task_id }) => {
+            const projectRoot = process.cwd();
+            const result = getTaskContext(projectRoot, task_id);
+            return {
+                content: [{ type: 'text', text: JSON.stringify(result) }],
+            };
+        });
+        server.registerTool('mark_explored', {
+            title: 'Mark Explored',
+            description: 'Marks a file as explored for a task, with optional status and notes.',
+            inputSchema: {
+                task_id: z.string().describe('Task ID'),
+                path: z.string().describe('File path relative to project root'),
+                status: z
+                    .enum(['explored', 'skipped', 'flagged'])
+                    .optional()
+                    .describe('Exploration status (default: explored)'),
+                notes: z.string().optional().describe('Optional notes about the file'),
+            },
+        }, async ({ task_id, path, status, notes }) => {
+            const projectRoot = process.cwd();
+            const result = markExploredTool(projectRoot, task_id, path, status, notes);
+            return {
+                content: [{ type: 'text', text: JSON.stringify(result) }],
+            };
+        });
+    }
+    // === TELEMETRY GROUP (off by default) ===
+    if (config.tools?.telemetry) {
+        server.registerTool('get_token_report', {
+            title: 'Get Token Report',
+            description: 'Get aggregated token usage telemetry report showing cache efficiency and token savings',
+            inputSchema: {
+                period: z
+                    .enum(['session', 'all', 'last_n_hours'])
+                    .optional()
+                    .describe('Time period for the report'),
+                hours: z
+                    .number()
+                    .optional()
+                    .describe('Number of hours to look back (only for last_n_hours period)'),
+                session_id: z
+                    .string()
+                    .optional()
+                    .describe('Session ID (only for session period)'),
+                include_diagnostics: z
+                    .boolean()
+                    .optional()
+                    .describe('Include cache health diagnostics'),
+            },
+        }, async ({ period, hours, session_id, include_diagnostics }) => {
+            const projectRoot = process.cwd();
+            const report = getTokenReport(projectRoot, period, hours, session_id, include_diagnostics);
+            return {
+                content: [{ type: 'text', text: JSON.stringify(report, null, 2) }],
+            };
+        });
+    }
+}
 async function main() {
+    const projectRoot = process.cwd();
+    // Load config before tool registration
+    const config = loadConfig(projectRoot);
+    // Register tools based on config
+    registerTools(server, config);
+    // Connect transport
     const transport = new StdioServerTransport();
     await server.connect(transport);
-    const projectRoot = process.cwd();
+    // Log enabled tool groups
+    const enabledGroups = ['navigation'];
+    if (config.tools?.summaries !== false)
+        enabledGroups.push('summaries');
+    if (config.tools?.tasks)
+        enabledGroups.push('tasks');
+    if (config.tools?.telemetry)
+        enabledGroups.push('telemetry');
+    process.stderr.write(`Tool groups: ${enabledGroups.join(', ')}\n`);
     // Auto-start session
     const sessionManager = new SessionManager(projectRoot);
     const session = sessionManager.startSession({ source: 'mcp-connect' });
@@ -258,8 +291,6 @@ async function main() {
     process.on('SIGINT', cleanup);
     process.on('SIGTERM', cleanup);
     process.on('beforeExit', cleanup);
-    // Load project config
-    const config = loadConfig(projectRoot);
     // Run GC in background on startup (non-blocking)
     runGC(projectRoot, config.gc).catch((err) => {
         process.stderr.write(`GC warning: ${err instanceof Error ? err.message : String(err)}\n`);

package/dist/server.js.map

@@ -1 +1 @@
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package/dist/tools/search-by-purpose.d.ts

@@ -9,6 +9,7 @@ export interface SearchByPurposeResult {
     query: string;
     results: SearchResult[];
     totalCached: number;
+    scope?: string;
 }
-export declare function searchByPurpose(projectRoot: string, query: string, limit?: number): SearchByPurposeResult;
+export declare function searchByPurpose(projectRoot: string, query: string, limit?: number, pathPrefix?: string): SearchByPurposeResult;
 //# sourceMappingURL=search-by-purpose.d.ts.map

package/dist/tools/search-by-purpose.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"search-by-purpose.d.ts","sourceRoot":"","sources":["../../src/tools/search-by-purpose.ts"],"names":[],"mappings":"AAGA,MAAM,WAAW,YAAY;IAC3B,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,MAAM,CAAC;IAChB,SAAS,EAAE,MAAM,EAAE,CAAC;IACpB,OAAO,EAAE,MAAM,EAAE,CAAC;IAClB,UAAU,EAAE,MAAM,CAAC;CACpB;AAED,MAAM,WAAW,qBAAqB;IACpC,KAAK,EAAE,MAAM,CAAC;IACd,OAAO,EAAE,YAAY,EAAE,CAAC;IACxB,WAAW,EAAE,MAAM,CAAC;CACrB;AAED,wBAAgB,eAAe,CAC7B,WAAW,EAAE,MAAM,EACnB,KAAK,EAAE,MAAM,EACb,KAAK,CAAC,EAAE,MAAM,GACb,qBAAqB,CAuEvB"}
+{"version":3,"file":"search-by-purpose.d.ts","sourceRoot":"","sources":["../../src/tools/search-by-purpose.ts"],"names":[],"mappings":"AAIA,MAAM,WAAW,YAAY;IAC3B,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,MAAM,CAAC;IAChB,SAAS,EAAE,MAAM,EAAE,CAAC;IACpB,OAAO,EAAE,MAAM,EAAE,CAAC;IAClB,UAAU,EAAE,MAAM,CAAC;CACpB;AAED,MAAM,WAAW,qBAAqB;IACpC,KAAK,EAAE,MAAM,CAAC;IACd,OAAO,EAAE,YAAY,EAAE,CAAC;IACxB,WAAW,EAAE,MAAM,CAAC;IACpB,KAAK,CAAC,EAAE,MAAM,CAAC;CAChB;AAED,wBAAgB,eAAe,CAC7B,WAAW,EAAE,MAAM,EACnB,KAAK,EAAE,MAAM,EACb,KAAK,CAAC,EAAE,MAAM,EACd,UAAU,CAAC,EAAE,MAAM,GAClB,qBAAqB,CA0FvB"}

package/dist/tools/search-by-purpose.js

@@ -1,12 +1,30 @@
 import { CacheStore } from '../cache/store.js';
 import { TelemetryTracker } from '../telemetry/tracker.js';
-export function searchByPurpose(projectRoot, query, limit) {
+import { toPosix } from '../utils/posix-path.js';
+export function searchByPurpose(projectRoot, query, limit, pathPrefix) {
     const store = new CacheStore(projectRoot);
-    const allEntries = store.getAllEntries();
     const effectiveLimit = limit ?? 20;
+    // Optional scope: restrict the search to files at or under a directory/prefix.
+    // Normalized so "src/cache", "src/cache/", "./src/cache", "/src/cache", and the
+    // Windows form "src\cache" behave the same, and matched on a path boundary so
+    // "src/cache" excludes "src/cache-utils.ts". (Stored paths are POSIX-style and
+    // relative to root.)
+    const normalizedPrefix = pathPrefix
+        ? toPosix(pathPrefix.trim()).replace(/^(?:\.?\/)+/, '').replace(/\/+$/, '')
+        : undefined;
+    const allEntries = store.getAllEntries();
+    // Normalize the stored side too, so a forward-slash prefix still scopes paths
+    // that were cached on Windows (backslash separators) before posix-normalization
+    // at the indexing boundary existed.
+    const entries = normalizedPrefix
+        ? allEntries.filter((e) => {
+            const p = toPosix(e.path);
+            return p === normalizedPrefix || p.startsWith(`${normalizedPrefix}/`);
+        })
+        : allEntries;
     const queryTerms = query.toLowerCase().split(/\s+/).filter(Boolean);
     const results = [];
-    for (const entry of allEntries) {
+    for (const entry of entries) {
         if (!entry.summary)
             continue;
         const matchedOn = [];
@@ -47,7 +65,7 @@ export function searchByPurpose(projectRoot, query, limit) {
     // Token estimate: approximate raw file tokens from lineCount (avg ~40 chars/line).
     const tracker = new TelemetryTracker(projectRoot);
     for (const result of matched) {
-        const entry = allEntries.find(e => e.path === result.path);
+        const entry = entries.find(e => e.path === result.path);
         // Approximate raw file tokens from lineCount (avg ~40 chars/line, ~4 chars/token)
         const estimatedRawTokens = entry?.summary ? entry.summary.lineCount * 10 : 0;
         tracker.trackEvent('summary_served', result.path, estimatedRawTokens);
@@ -55,7 +73,8 @@ export function searchByPurpose(projectRoot, query, limit) {
     return {
         query,
         results: matched.map(({ score: _score, ...rest }) => rest),
-        totalCached: allEntries.filter(e => e.summary).length,
+        totalCached: entries.filter(e => e.summary).length,
+        ...(normalizedPrefix ? { scope: normalizedPrefix } : {}),
     };
 }
 //# sourceMappingURL=search-by-purpose.js.map

package/dist/tools/search-by-purpose.js.map

@@ -1 +1 @@
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package/dist/utils/posix-path.d.ts

@@ -0,0 +1,14 @@
+/**
+ * Normalize a path to use POSIX (forward-slash) separators.
+ *
+ * Stored cache paths, dependency-graph edges, and validated relative paths are
+ * all kept in POSIX form so that lookups, prefix scoping (search_by_purpose
+ * `pathPrefix`), and segment splits behave identically across platforms. On
+ * Windows, `path.relative()` yields backslash separators; this converts them at
+ * the boundary so the rest of the codebase never has to special-case `\`.
+ *
+ * @param p - A path that may contain backslash separators.
+ * @returns The same path with all backslashes replaced by forward slashes.
+ */
+export declare function toPosix(p: string): string;
+//# sourceMappingURL=posix-path.d.ts.map

package/dist/utils/posix-path.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"posix-path.d.ts","sourceRoot":"","sources":["../../src/utils/posix-path.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;GAWG;AACH,wBAAgB,OAAO,CAAC,CAAC,EAAE,MAAM,GAAG,MAAM,CAEzC"}

package/dist/utils/posix-path.js

@@ -0,0 +1,16 @@
+/**
+ * Normalize a path to use POSIX (forward-slash) separators.
+ *
+ * Stored cache paths, dependency-graph edges, and validated relative paths are
+ * all kept in POSIX form so that lookups, prefix scoping (search_by_purpose
+ * `pathPrefix`), and segment splits behave identically across platforms. On
+ * Windows, `path.relative()` yields backslash separators; this converts them at
+ * the boundary so the rest of the codebase never has to special-case `\`.
+ *
+ * @param p - A path that may contain backslash separators.
+ * @returns The same path with all backslashes replaced by forward slashes.
+ */
+export function toPosix(p) {
+    return p.replace(/\\/g, '/');
+}
+//# sourceMappingURL=posix-path.js.map

package/dist/utils/posix-path.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"posix-path.js","sourceRoot":"","sources":["../../src/utils/posix-path.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;GAWG;AACH,MAAM,UAAU,OAAO,CAAC,CAAS;IAC/B,OAAO,CAAC,CAAC,OAAO,CAAC,KAAK,EAAE,GAAG,CAAC,CAAC;AAC/B,CAAC"}

package/dist/utils/validate-path.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"validate-path.d.ts","sourceRoot":"","sources":["../../src/utils/validate-path.ts"],"names":[],"mappings":"AAEA;;;;;;;GAOG;AACH,wBAAgB,YAAY,CAAC,WAAW,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,MAAM,CAkB1E"}
+{"version":3,"file":"validate-path.d.ts","sourceRoot":"","sources":["../../src/utils/validate-path.ts"],"names":[],"mappings":"AAGA;;;;;;;GAOG;AACH,wBAAgB,YAAY,CAAC,WAAW,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,MAAM,CAkB1E"}

package/dist/utils/validate-path.js

@@ -1,4 +1,5 @@
 import { resolve, normalize, relative, sep } from 'node:path';
+import { toPosix } from './posix-path.js';
 /**
  * Validates that a file path is safe and resolves within the project root.
  * Throws an error if the path attempts traversal outside the project.
@@ -17,6 +18,6 @@ export function validatePath(projectRoot, filePath) {
         !resolvedPath.startsWith(normalizedRoot + sep)) {
         throw new Error(`Path traversal detected: ${filePath} resolves outside project root`);
     }
-    return relative(normalizedRoot, resolvedPath);
+    return toPosix(relative(normalizedRoot, resolvedPath));
 }
 //# sourceMappingURL=validate-path.js.map

package/dist/utils/validate-path.js.map

@@ -1 +1 @@
-{"version":3,"file":"validate-path.js","sourceRoot":"","sources":["../../src/utils/validate-path.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,SAAS,EAAE,QAAQ,EAAE,GAAG,EAAE,MAAM,WAAW,CAAC;AAE9D;;;;;;;GAOG;AACH,MAAM,UAAU,YAAY,CAAC,WAAmB,EAAE,QAAgB;IAChE,IAAI,QAAQ,CAAC,QAAQ,CAAC,IAAI,CAAC,EAAE,CAAC;QAC5B,MAAM,IAAI,KAAK,CAAC,wCAAwC,QAAQ,GAAG,CAAC,CAAC;IACvE,CAAC;IAED,MAAM,cAAc,GAAG,SAAS,CAAC,OAAO,CAAC,WAAW,CAAC,CAAC,CAAC;IACvD,MAAM,YAAY,GAAG,SAAS,CAAC,OAAO,CAAC,WAAW,EAAE,QAAQ,CAAC,CAAC,CAAC;IAE/D,IACE,YAAY,KAAK,cAAc;QAC/B,CAAC,YAAY,CAAC,UAAU,CAAC,cAAc,GAAG,GAAG,CAAC,EAC9C,CAAC;QACD,MAAM,IAAI,KAAK,CACb,4BAA4B,QAAQ,gCAAgC,CACrE,CAAC;IACJ,CAAC;IAED,OAAO,QAAQ,CAAC,cAAc,EAAE,YAAY,CAAC,CAAC;AAChD,CAAC"}
+{"version":3,"file":"validate-path.js","sourceRoot":"","sources":["../../src/utils/validate-path.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,SAAS,EAAE,QAAQ,EAAE,GAAG,EAAE,MAAM,WAAW,CAAC;AAC9D,OAAO,EAAE,OAAO,EAAE,MAAM,iBAAiB,CAAC;AAE1C;;;;;;;GAOG;AACH,MAAM,UAAU,YAAY,CAAC,WAAmB,EAAE,QAAgB;IAChE,IAAI,QAAQ,CAAC,QAAQ,CAAC,IAAI,CAAC,EAAE,CAAC;QAC5B,MAAM,IAAI,KAAK,CAAC,wCAAwC,QAAQ,GAAG,CAAC,CAAC;IACvE,CAAC;IAED,MAAM,cAAc,GAAG,SAAS,CAAC,OAAO,CAAC,WAAW,CAAC,CAAC,CAAC;IACvD,MAAM,YAAY,GAAG,SAAS,CAAC,OAAO,CAAC,WAAW,EAAE,QAAQ,CAAC,CAAC,CAAC;IAE/D,IACE,YAAY,KAAK,cAAc;QAC/B,CAAC,YAAY,CAAC,UAAU,CAAC,cAAc,GAAG,GAAG,CAAC,EAC9C,CAAC;QACD,MAAM,IAAI,KAAK,CACb,4BAA4B,QAAQ,gCAAgC,CACrE,CAAC;IACJ,CAAC;IAED,OAAO,OAAO,CAAC,QAAQ,CAAC,cAAc,EAAE,YAAY,CAAC,CAAC,CAAC;AACzD,CAAC"}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@blamechris/repo-memory",
-  "version": "0.5.0",
+  "version": "0.8.0",
   "description": "MCP server that gives AI coding agents persistent memory about your codebase",
   "type": "module",
   "main": "dist/server.js",
@@ -56,7 +56,7 @@
   },
   "dependencies": {
     "@modelcontextprotocol/sdk": "^1.27.1",
-    "better-sqlite3": "^12.6.2",
+    "better-sqlite3": "^12.10.0",
     "zod": "^4.3.6"
   }
 }