@blamechris/repo-memory 0.12.0 → 0.13.0

package/dist/cache/generation.d.ts

@@ -0,0 +1,50 @@
+/**
+ * Summarizer generation bookkeeping, shared by the cache store and the
+ * indexer. This lives below both layers so `CacheStore` can enforce the
+ * generation rules on summary writes without importing the indexer (which
+ * itself imports the store).
+ *
+ * The generation tag stored in the meta table has the form `<mode>:<N>`
+ * (e.g. `ast:3`). Two rules govern it:
+ *
+ * - **Numeric monotonicity.** The numeric generation `N` may only increase.
+ *   A process running an older package version than the one that last tagged
+ *   the database must never clear summaries, never write summaries, and never
+ *   regress the tag. Real workflows hit this: a long-running MCP server and an
+ *   `npx` post-merge hook can share one cache at different package versions.
+ * - **Mode is last-writer-wins.** A mode difference (regex vs ast) at the same
+ *   `N` means per-process configuration disagrees, which is a user
+ *   misconfiguration; flipping the mode legitimately clears and re-tags, so
+ *   the monotonicity rule applies to the numeric generation only.
+ */
+/**
+ * Bump when summary output changes in a way that should invalidate previously
+ * cached summaries (combined with the mode into the generation tag).
+ *
+ * Generation 2: the AST summarizer gained Python/Go/Rust support, so summaries
+ * for those languages cached under ast mode (which were regex-produced
+ * fallbacks at generation 1) must lazily regenerate.
+ *
+ * Generation 3: the AST summarizer gained Kotlin/Java support, so summaries
+ * for those languages cached under ast mode (regex-produced generic
+ * classifications at earlier generations) must lazily regenerate.
+ */
+export declare const SUMMARIZER_GENERATION = 3;
+/** Meta table key holding the generation tag (`<mode>:<N>`). */
+export declare const GENERATION_META_KEY = "summarizer_generation";
+/** Test hook: pretend this process runs a different package generation. */
+export declare function setSummarizerGenerationForTests(generation: number | null): void;
+/** The summarizer generation this process writes. */
+export declare function currentSummarizerGeneration(): number;
+/** Parse a stored `<mode>:<N>` tag. Returns null for missing or unparseable tags. */
+export declare function parseGenerationTag(tag: string | null): {
+    mode: string;
+    generation: number;
+} | null;
+/**
+ * True when the stored tag was written by a strictly newer generation than
+ * this process — in which case this process must not persist summaries or
+ * touch the tag (see module doc).
+ */
+export declare function isStoredGenerationNewer(storedTag: string | null): boolean;
+//# sourceMappingURL=generation.d.ts.map

package/dist/cache/generation.d.ts.map

@@ -0,0 +1 @@
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package/dist/cache/generation.js

@@ -0,0 +1,62 @@
+/**
+ * Summarizer generation bookkeeping, shared by the cache store and the
+ * indexer. This lives below both layers so `CacheStore` can enforce the
+ * generation rules on summary writes without importing the indexer (which
+ * itself imports the store).
+ *
+ * The generation tag stored in the meta table has the form `<mode>:<N>`
+ * (e.g. `ast:3`). Two rules govern it:
+ *
+ * - **Numeric monotonicity.** The numeric generation `N` may only increase.
+ *   A process running an older package version than the one that last tagged
+ *   the database must never clear summaries, never write summaries, and never
+ *   regress the tag. Real workflows hit this: a long-running MCP server and an
+ *   `npx` post-merge hook can share one cache at different package versions.
+ * - **Mode is last-writer-wins.** A mode difference (regex vs ast) at the same
+ *   `N` means per-process configuration disagrees, which is a user
+ *   misconfiguration; flipping the mode legitimately clears and re-tags, so
+ *   the monotonicity rule applies to the numeric generation only.
+ */
+/**
+ * Bump when summary output changes in a way that should invalidate previously
+ * cached summaries (combined with the mode into the generation tag).
+ *
+ * Generation 2: the AST summarizer gained Python/Go/Rust support, so summaries
+ * for those languages cached under ast mode (which were regex-produced
+ * fallbacks at generation 1) must lazily regenerate.
+ *
+ * Generation 3: the AST summarizer gained Kotlin/Java support, so summaries
+ * for those languages cached under ast mode (regex-produced generic
+ * classifications at earlier generations) must lazily regenerate.
+ */
+export const SUMMARIZER_GENERATION = 3;
+/** Meta table key holding the generation tag (`<mode>:<N>`). */
+export const GENERATION_META_KEY = 'summarizer_generation';
+let generationOverride = null;
+/** Test hook: pretend this process runs a different package generation. */
+export function setSummarizerGenerationForTests(generation) {
+    generationOverride = generation;
+}
+/** The summarizer generation this process writes. */
+export function currentSummarizerGeneration() {
+    return generationOverride ?? SUMMARIZER_GENERATION;
+}
+/** Parse a stored `<mode>:<N>` tag. Returns null for missing or unparseable tags. */
+export function parseGenerationTag(tag) {
+    if (tag === null)
+        return null;
+    const match = /^([a-z]+):(\d+)$/.exec(tag);
+    if (!match)
+        return null;
+    return { mode: match[1], generation: Number(match[2]) };
+}
+/**
+ * True when the stored tag was written by a strictly newer generation than
+ * this process — in which case this process must not persist summaries or
+ * touch the tag (see module doc).
+ */
+export function isStoredGenerationNewer(storedTag) {
+    const parsed = parseGenerationTag(storedTag);
+    return parsed !== null && parsed.generation > currentSummarizerGeneration();
+}
+//# sourceMappingURL=generation.js.map

package/dist/cache/generation.js.map

@@ -0,0 +1 @@
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package/dist/cache/invalidation.d.ts

@@ -16,7 +16,9 @@ export declare class CacheInvalidator {
      */
     invalidate(relativePath: string): void;
     /**
-     * Delete all cache entries.
+     * Delete all cache entries in one atomic statement — entries written by a
+     * concurrent process cannot slip through the way they could with a
+     * snapshot-then-delete loop.
      */
     invalidateAll(): void;
     /**

package/dist/cache/invalidation.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"invalidation.d.ts","sourceRoot":"","sources":["../../src/cache/invalidation.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,YAAY,CAAC;AAE7C,qBAAa,gBAAgB;IAC3B,OAAO,CAAC,QAAQ,CAAC,WAAW,CAAS;IACrC,OAAO,CAAC,QAAQ,CAAC,KAAK,CAAa;gBAEvB,WAAW,EAAE,MAAM,EAAE,KAAK,EAAE,UAAU;IAKlD;;;OAGG;IACG,aAAa,CACjB,YAAY,EAAE,MAAM,GACnB,OAAO,CAAC;QAAE,KAAK,EAAE,OAAO,CAAC;QAAC,WAAW,EAAE,MAAM,GAAG,IAAI,CAAA;KAAE,CAAC;IAe1D;;OAEG;IACH,UAAU,CAAC,YAAY,EAAE,MAAM,GAAG,IAAI;IAItC;;;;OAIG;IACH,aAAa,IAAI,IAAI;IAIrB;;;;OAIG;IACG,gBAAgB,CAAC,YAAY,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC,MAAM,EAAE,CAAC;CAelE"}

package/dist/cache/invalidation.js

@@ -29,13 +29,12 @@ export class CacheInvalidator {
         this.store.deleteEntry(relativePath);
     }
     /**
-     * Delete all cache entries.
+     * Delete all cache entries in one atomic statement — entries written by a
+     * concurrent process cannot slip through the way they could with a
+     * snapshot-then-delete loop.
      */
     invalidateAll() {
-        const entries = this.store.getAllEntries();
-        for (const entry of entries) {
-            this.store.deleteEntry(entry.path);
-        }
+        this.store.deleteAllEntries();
     }
     /**
      * Given a list of relative paths, return those whose current hash

package/dist/cache/invalidation.js.map

@@ -1 +1 @@
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package/dist/cache/ranking.d.ts

@@ -1,18 +1,20 @@
 import type { DependencyGraph } from '../graph/dependency-graph.js';
 import type { CacheStore } from './store.js';
 export interface RankingSignals {
+    relationship: number;
     dependencyProximity: number;
     recency: number;
     fileTypeRelevance: number;
     taskContextRelevance: number;
-    changeFrequency: number;
+    centrality: number;
 }
 export interface RankingWeights {
+    relationship: number;
     dependencyProximity: number;
     recency: number;
     fileTypeRelevance: number;
     taskContextRelevance: number;
-    changeFrequency: number;
+    centrality: number;
 }
 export interface RankedFile {
     path: string;
@@ -26,23 +28,66 @@ export interface RankingOptions {
     flaggedFiles?: string[];
     graph?: DependencyGraph;
     cacheStore?: CacheStore;
+    /**
+     * The file the caller asked about. Used as a proximity anchor so
+     * dependencyProximity works even without task-explored files.
+     */
+    queryFile?: string;
+    /**
+     * Pre-classified relationship of each candidate to the query file
+     * (e.g. 'imports', 'imported-by', 'transitive-dependency', 'same-directory').
+     * Candidates absent from the map get a relationship score of 0.
+     */
+    relationships?: ReadonlyMap<string, string>;
     limit?: number;
 }
+/**
+ * Default signal weights (sum to 1.0 so composite scores stay in [0, 1]).
+ *
+ * Rationale:
+ * - relationship (0.30): the strongest evidence available — *why* the
+ *   candidate is in the result set. Direct imports/dependents beat
+ *   transitive links beat same-directory bystanders.
+ * - dependencyProximity (0.25): hop distance in the import graph from the
+ *   query file (and from task-explored files when a task is active).
+ *   Reinforces relationship and differentiates within the transitive bucket.
+ * - recency (0.15): files indexed/seen recently in this session are more
+ *   likely part of the current working set (4-hour half-life decay).
+ * - taskContextRelevance (0.15): directory adjacency to the active task's
+ *   explored/flagged files; constant when no task is active.
+ * - fileTypeRelevance (0.10): mild prior for source over config over tests.
+ * - centrality (0.05): log-scaled degree centrality — a deliberate
+ *   tiebreaker so hub files edge out leaf files when structural signals
+ *   tie, without importance ever outranking a direct relationship.
+ */
 export declare const DEFAULT_WEIGHTS: RankingWeights;
 /** Score file type relevance: source=1.0, config=0.5, test=0.3, other=0.2 */
 export declare function computeFileTypeRelevance(filePath: string): number;
 /**
  * Exponential decay based on how recently the file was checked.
  * Files checked in the last hour get ~1.0, files checked days ago get ~0.0.
- * Uses a half-life of 4 hours.
+ * Uses a half-life of 4 hours. Age is quantized to whole minutes so scores
+ * are deterministic across back-to-back calls (sub-minute age differences
+ * are noise at a 4-hour half-life).
  */
 export declare function computeRecency(lastChecked: number, now?: number): number;
+/** Score the candidate's classified relationship to the query file. */
+export declare function computeRelationshipScore(relationship: string | undefined): number;
+/**
+ * Log-scaled degree centrality relative to the most-connected candidate.
+ * Returns 0 when the file has no connections or no maximum is known, 1.0
+ * for the best-connected candidate. Log scaling compresses the range so a
+ * 50-edge hub does not score 50x a 1-edge leaf — it is a tiebreaker prior,
+ * not a dominator.
+ */
+export declare function computeCentrality(degree: number, maxDegree: number): number;
 /**
- * Score based on distance in the dependency graph from explored files.
+ * Score based on distance in the dependency graph from anchor files (the
+ * query file and/or task-explored files).
  * 1.0 if directly connected, 0.5 if 2 hops away, decaying by 1/2^(distance-1).
- * Returns 0 if no graph or no explored files.
+ * Returns 0 if no graph or no anchor files.
  */
-export declare function computeDependencyProximity(filePath: string, exploredFiles: string[], graph: DependencyGraph): number;
+export declare function computeDependencyProximity(filePath: string, anchorFiles: string[], graph: DependencyGraph): number;
 /**
  * Score based on directory proximity to flagged and explored files.
  * 1.0 if in same directory as flagged files, 0.7 if in same directory as explored files,

package/dist/cache/ranking.d.ts.map

@@ -1 +1 @@
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package/dist/cache/ranking.js

@@ -1,10 +1,41 @@
 import { dirname } from 'path';
+/**
+ * Default signal weights (sum to 1.0 so composite scores stay in [0, 1]).
+ *
+ * Rationale:
+ * - relationship (0.30): the strongest evidence available — *why* the
+ *   candidate is in the result set. Direct imports/dependents beat
+ *   transitive links beat same-directory bystanders.
+ * - dependencyProximity (0.25): hop distance in the import graph from the
+ *   query file (and from task-explored files when a task is active).
+ *   Reinforces relationship and differentiates within the transitive bucket.
+ * - recency (0.15): files indexed/seen recently in this session are more
+ *   likely part of the current working set (4-hour half-life decay).
+ * - taskContextRelevance (0.15): directory adjacency to the active task's
+ *   explored/flagged files; constant when no task is active.
+ * - fileTypeRelevance (0.10): mild prior for source over config over tests.
+ * - centrality (0.05): log-scaled degree centrality — a deliberate
+ *   tiebreaker so hub files edge out leaf files when structural signals
+ *   tie, without importance ever outranking a direct relationship.
+ */
 export const DEFAULT_WEIGHTS = {
-    dependencyProximity: 0.3,
-    recency: 0.2,
-    fileTypeRelevance: 0.15,
-    taskContextRelevance: 0.25,
-    changeFrequency: 0.1,
+    relationship: 0.3,
+    dependencyProximity: 0.25,
+    recency: 0.15,
+    fileTypeRelevance: 0.1,
+    taskContextRelevance: 0.15,
+    centrality: 0.05,
+};
+/**
+ * Relationship-type ordering: direct edges (imports/imported-by) are the
+ * strongest relevance evidence, transitive links weaker, directory
+ * neighbors weakest. Unknown/unclassified relationships score 0.
+ */
+const RELATIONSHIP_SCORES = {
+    'imports': 1.0,
+    'imported-by': 1.0,
+    'transitive-dependency': 0.5,
+    'same-directory': 0.25,
 };
 const SOURCE_EXTENSIONS = new Set(['.ts', '.js', '.tsx', '.jsx']);
 const CONFIG_BASENAMES = new Set([
@@ -56,26 +87,49 @@ export function computeFileTypeRelevance(filePath) {
 /**
  * Exponential decay based on how recently the file was checked.
  * Files checked in the last hour get ~1.0, files checked days ago get ~0.0.
- * Uses a half-life of 4 hours.
+ * Uses a half-life of 4 hours. Age is quantized to whole minutes so scores
+ * are deterministic across back-to-back calls (sub-minute age differences
+ * are noise at a 4-hour half-life).
  */
 export function computeRecency(lastChecked, now) {
     const currentTime = now ?? Date.now();
     const ageMs = currentTime - lastChecked;
     if (ageMs <= 0)
         return 1.0;
+    const MINUTE_MS = 60 * 1000;
     const HALF_LIFE_MS = 4 * 60 * 60 * 1000; // 4 hours
-    return Math.pow(2, -ageMs / HALF_LIFE_MS);
+    const quantizedAgeMs = Math.floor(ageMs / MINUTE_MS) * MINUTE_MS;
+    return Math.pow(2, -quantizedAgeMs / HALF_LIFE_MS);
+}
+/** Score the candidate's classified relationship to the query file. */
+export function computeRelationshipScore(relationship) {
+    if (!relationship)
+        return 0;
+    return RELATIONSHIP_SCORES[relationship] ?? 0;
 }
 /**
- * Score based on distance in the dependency graph from explored files.
+ * Log-scaled degree centrality relative to the most-connected candidate.
+ * Returns 0 when the file has no connections or no maximum is known, 1.0
+ * for the best-connected candidate. Log scaling compresses the range so a
+ * 50-edge hub does not score 50x a 1-edge leaf — it is a tiebreaker prior,
+ * not a dominator.
+ */
+export function computeCentrality(degree, maxDegree) {
+    if (degree <= 0 || maxDegree <= 0)
+        return 0;
+    return Math.log1p(degree) / Math.log1p(maxDegree);
+}
+/**
+ * Score based on distance in the dependency graph from anchor files (the
+ * query file and/or task-explored files).
  * 1.0 if directly connected, 0.5 if 2 hops away, decaying by 1/2^(distance-1).
- * Returns 0 if no graph or no explored files.
+ * Returns 0 if no graph or no anchor files.
  */
-export function computeDependencyProximity(filePath, exploredFiles, graph) {
-    if (exploredFiles.length === 0)
+export function computeDependencyProximity(filePath, anchorFiles, graph) {
+    if (anchorFiles.length === 0)
         return 0;
     let bestScore = 0;
-    for (const explored of exploredFiles) {
+    for (const explored of anchorFiles) {
         // Check direct connection (1 hop)
         const deps = graph.getDependencies(explored);
         const dependents = graph.getDependents(explored);
@@ -151,6 +205,24 @@ export function rankFiles(files, options) {
     const exploredFiles = options.exploredFiles ?? [];
     const flaggedFiles = options.flaggedFiles ?? [];
     const now = Date.now();
+    // Proximity anchors: the query file (so the signal works without a task)
+    // plus any task-explored files.
+    const anchorFiles = options.queryFile
+        ? [options.queryFile, ...exploredFiles]
+        : exploredFiles;
+    // Degree centrality, normalized against the best-connected candidate so
+    // the signal is relative to the result set being ranked.
+    const degrees = new Map();
+    let maxDegree = 0;
+    if (options.graph) {
+        for (const filePath of files) {
+            const degree = options.graph.getDependencies(filePath).length +
+                options.graph.getDependents(filePath).length;
+            degrees.set(filePath, degree);
+            if (degree > maxDegree)
+                maxDegree = degree;
+        }
+    }
     const results = files.map((filePath) => {
         const fileTypeRelevance = computeFileTypeRelevance(filePath);
         let recency = 0.5; // default if no cache store
@@ -162,23 +234,25 @@ export function rankFiles(files, options) {
         }
         let dependencyProximity = 0;
         if (options.graph) {
-            dependencyProximity = computeDependencyProximity(filePath, exploredFiles, options.graph);
+            dependencyProximity = computeDependencyProximity(filePath, anchorFiles, options.graph);
         }
         const taskContextRelevance = computeTaskContextRelevance(filePath, exploredFiles, flaggedFiles);
-        // changeFrequency is a placeholder — would need git log data to compute properly
-        const changeFrequency = 0.5;
+        const relationship = computeRelationshipScore(options.relationships?.get(filePath));
+        const centrality = computeCentrality(degrees.get(filePath) ?? 0, maxDegree);
         const signals = {
+            relationship,
             dependencyProximity,
             recency,
             fileTypeRelevance,
             taskContextRelevance,
-            changeFrequency,
+            centrality,
         };
-        const score = signals.dependencyProximity * weights.dependencyProximity +
+        const score = signals.relationship * weights.relationship +
+            signals.dependencyProximity * weights.dependencyProximity +
             signals.recency * weights.recency +
             signals.fileTypeRelevance * weights.fileTypeRelevance +
             signals.taskContextRelevance * weights.taskContextRelevance +
-            signals.changeFrequency * weights.changeFrequency;
+            signals.centrality * weights.centrality;
         return { path: filePath, score, signals };
     });
     results.sort((a, b) => b.score - a.score);

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package/dist/cache/store.d.ts

@@ -5,12 +5,28 @@ export declare class CacheStore {
     getEntry(path: string): CacheEntry | null;
     setEntry(path: string, hash: string, summary: FileSummary | null): void;
     getAllEntries(): CacheEntry[];
+    /**
+     * Remove a cache entry and the dependency-graph edges extracted from it, in
+     * one transaction. Edges derive from the file's contents, so they share the
+     * entry's lifetime — leaving them behind would serve stale graph data until
+     * the next GC pass. (Incoming edges from other files are left alone: those
+     * files' contents still declare the import.)
+     */
     deleteEntry(path: string): void;
+    /** Refresh last_checked for an entry without altering its hash or summary. */
+    touchEntry(path: string): void;
     setEntries(entries: Array<{
         path: string;
         hash: string;
         summary?: FileSummary | null;
     }>): void;
+    /**
+     * Whether the stored generation tag belongs to a strictly newer package
+     * generation than this process, in which case summary writes from this
+     * process must not be persisted (Guardian I3). Must be called while the
+     * write lock is held so the answer cannot change before the write lands.
+     */
+    private summaryWritesBlocked;
     /** Read a value from the meta key/value table. */
     getMeta(key: string): string | null;
     /** Write a value to the meta key/value table. */
@@ -21,6 +37,22 @@ export declare class CacheStore {
      * summaries regenerate lazily on next access.
      */
     clearAllSummaries(): void;
+    /**
+     * Atomically drop all summaries and write a meta value in one IMMEDIATE
+     * transaction (Guardian I4). Used for generation bumps: no other process
+     * can insert an old-generation summary between the clear and the tag write,
+     * and a crash between the two is unobservable.
+     */
+    clearAllSummariesAndSetMeta(key: string, value: string): void;
+    /**
+     * Run `fn` while holding the database write lock (BEGIN IMMEDIATE). Use for
+     * read-decide-write sequences that must not interleave with writes from
+     * other processes. Nested store calls that open their own transactions
+     * collapse into savepoints inside this one.
+     */
+    withWriteLock<T>(fn: () => T): T;
+    /** Delete every cache entry in a single atomic statement. */
+    deleteAllEntries(): void;
     getStaleEntries(maxAge: number): CacheEntry[];
 }
 //# sourceMappingURL=store.d.ts.map

package/dist/cache/store.d.ts.map

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