@bis-code/deep-think 1.1.1

package/server/dist/config/loader.d.ts

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+import type { DeepThinkConfig } from "../types.js";
+export declare function loadConfig(configPath?: string): DeepThinkConfig;
+//# sourceMappingURL=loader.d.ts.map

package/server/dist/config/loader.d.ts.map

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package/server/dist/config/loader.js

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+import { readFileSync, existsSync } from "fs";
+import { resolve } from "path";
+import { DEFAULT_CONFIG } from "./schema.js";
+export function loadConfig(configPath) {
+    const path = configPath
+        ?? process.env.MCP_DEEP_THINK_CONFIG
+        ?? resolve(process.cwd(), ".deep-think.json");
+    if (!existsSync(path)) {
+        return { ...DEFAULT_CONFIG };
+    }
+    try {
+        const raw = readFileSync(path, "utf-8");
+        const parsed = JSON.parse(raw);
+        return mergeConfig(DEFAULT_CONFIG, parsed);
+    }
+    catch {
+        console.error(`Warning: Failed to parse config at ${path}, using defaults`);
+        return { ...DEFAULT_CONFIG };
+    }
+}
+function mergeConfig(defaults, overrides) {
+    return {
+        project: { ...defaults.project, ...overrides.project },
+        thinking: { ...defaults.thinking, ...overrides.thinking },
+        practices: {
+            rules: overrides.practices?.rules ?? defaults.practices.rules,
+            antiPatterns: overrides.practices?.antiPatterns ?? defaults.practices.antiPatterns,
+            reviewChecklist: overrides.practices?.reviewChecklist ?? defaults.practices.reviewChecklist,
+        },
+        strategies: {
+            custom: overrides.strategies?.custom ?? defaults.strategies.custom,
+        },
+        reflection: { ...defaults.reflection, ...overrides.reflection },
+        persistence: { ...defaults.persistence, ...overrides.persistence },
+    };
+}
+//# sourceMappingURL=loader.js.map

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package/server/dist/config/schema.d.ts

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+import type { DeepThinkConfig } from "../types.js";
+export declare const DEFAULT_CONFIG: DeepThinkConfig;
+//# sourceMappingURL=schema.d.ts.map

package/server/dist/config/schema.d.ts.map

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package/server/dist/config/schema.js

@@ -0,0 +1,33 @@
+export const DEFAULT_CONFIG = {
+    project: {
+        name: "",
+        type: "",
+        language: "",
+        description: "",
+    },
+    thinking: {
+        defaultStrategy: null,
+        maxThoughts: 50,
+        autoCheckpointEvery: 10,
+        confidenceThreshold: 0.7,
+    },
+    practices: {
+        rules: [],
+        antiPatterns: [],
+        reviewChecklist: [],
+    },
+    strategies: {
+        custom: [],
+    },
+    reflection: {
+        alwaysCheck: ["practices.rules", "practices.antiPatterns"],
+        circularThreshold: 0.6,
+        contradictionSensitivity: "medium",
+    },
+    persistence: {
+        directory: ".deep-think/sessions",
+        maxCheckpoints: 10,
+        autoSave: true,
+    },
+};
+//# sourceMappingURL=schema.js.map

package/server/dist/config/schema.js.map

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package/server/dist/engine/analyzer.d.ts

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+import type { StoredThought, DeepThinkConfig, ReflectionResult } from "../types.js";
+export declare function tokenize(text: string): Set<string>;
+export declare function jaccardSimilarity(setA: Set<string>, setB: Set<string>): number;
+export declare class Analyzer {
+    private config;
+    constructor(config: DeepThinkConfig);
+    analyze(history: StoredThought[], branches: Record<string, StoredThought[]>, activeStrategy: string | null, focus: "all" | "progress" | "contradictions" | "gaps" | "patterns"): ReflectionResult;
+    private detectCircular;
+    private detectContradictions;
+    private detectGaps;
+    private checkPractices;
+    private summarizeProgress;
+    private buildSummary;
+}
+//# sourceMappingURL=analyzer.d.ts.map

package/server/dist/engine/analyzer.d.ts.map

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package/server/dist/engine/analyzer.js

@@ -0,0 +1,209 @@
+const STOP_WORDS = new Set([
+    "the", "a", "an", "is", "are", "was", "were", "be", "been", "being",
+    "have", "has", "had", "do", "does", "did", "will", "would", "could",
+    "should", "may", "might", "shall", "can", "need", "dare", "ought",
+    "used", "to", "of", "in", "for", "on", "with", "at", "by", "from",
+    "as", "into", "through", "during", "before", "after", "above", "below",
+    "between", "out", "off", "over", "under", "again", "further", "then",
+    "once", "here", "there", "when", "where", "why", "how", "all", "each",
+    "every", "both", "few", "more", "most", "other", "some", "such", "no",
+    "nor", "not", "only", "own", "same", "so", "than", "too", "very",
+    "just", "because", "but", "and", "or", "if", "while", "this", "that",
+    "these", "those", "it", "its", "i", "we", "you", "they", "he", "she",
+    "what", "which", "who", "whom", "think", "thought", "about",
+]);
+export function tokenize(text) {
+    const words = text
+        .toLowerCase()
+        .replace(/[^a-z0-9\s-]/g, "")
+        .split(/\s+/)
+        .filter(w => w.length > 2 && !STOP_WORDS.has(w));
+    return new Set(words);
+}
+export function jaccardSimilarity(setA, setB) {
+    if (setA.size === 0 && setB.size === 0)
+        return 0;
+    let intersection = 0;
+    for (const item of setA) {
+        if (setB.has(item))
+            intersection++;
+    }
+    const union = setA.size + setB.size - intersection;
+    return union === 0 ? 0 : intersection / union;
+}
+export class Analyzer {
+    config;
+    constructor(config) {
+        this.config = config;
+    }
+    analyze(history, branches, activeStrategy, focus) {
+        const patterns = [];
+        const suggestions = [];
+        const violations = [];
+        if (focus === "all" || focus === "patterns") {
+            patterns.push(...this.detectCircular(history));
+        }
+        if (focus === "all" || focus === "contradictions") {
+            patterns.push(...this.detectContradictions(history));
+        }
+        if (focus === "all" || focus === "gaps") {
+            suggestions.push(...this.detectGaps(history, activeStrategy));
+        }
+        if (focus === "all") {
+            violations.push(...this.checkPractices(history));
+        }
+        const progress = this.summarizeProgress(history, branches);
+        const summary = this.buildSummary(history, patterns, progress);
+        if (patterns.length === 0 && focus !== "progress") {
+            suggestions.push("No issues detected. Reasoning chain looks consistent so far.");
+        }
+        return { summary, patterns, suggestions, practiceViolations: violations, progress };
+    }
+    detectCircular(history) {
+        const patterns = [];
+        const threshold = this.config.reflection.circularThreshold;
+        const tokenSets = history.map(t => tokenize(t.thought));
+        for (let i = 0; i < history.length; i++) {
+            for (let j = i + 2; j < history.length; j++) {
+                const sim = jaccardSimilarity(tokenSets[i], tokenSets[j]);
+                if (sim > threshold) {
+                    patterns.push({
+                        type: "circular",
+                        description: `Thoughts ${history[i].thoughtNumber} and ${history[j].thoughtNumber} share ${Math.round(sim * 100)}% similarity — possible circular reasoning`,
+                        involvedThoughts: [history[i].thoughtNumber, history[j].thoughtNumber],
+                        severity: sim > 0.8 ? "critical" : "warning",
+                    });
+                }
+            }
+        }
+        return patterns;
+    }
+    detectContradictions(history) {
+        const patterns = [];
+        const negationPairs = [
+            ["should", "should not"], ["must", "must not"], ["can", "cannot"],
+            ["will", "will not"], ["is", "is not"], ["are", "are not"],
+            ["recommend", "avoid"], ["yes", "no"], ["true", "false"],
+            ["good", "bad"], ["increase", "decrease"], ["add", "remove"],
+        ];
+        for (let i = 0; i < history.length; i++) {
+            const textI = history[i].thought.toLowerCase();
+            for (let j = i + 1; j < history.length; j++) {
+                const textJ = history[j].thought.toLowerCase();
+                for (const [pos, neg] of negationPairs) {
+                    if ((textI.includes(pos) && textJ.includes(neg)) ||
+                        (textI.includes(neg) && textJ.includes(pos))) {
+                        const tokensI = tokenize(history[i].thought);
+                        const tokensJ = tokenize(history[j].thought);
+                        const sim = jaccardSimilarity(tokensI, tokensJ);
+                        // Only flag if the thoughts are about the same topic (some word overlap)
+                        if (sim > 0.2) {
+                            patterns.push({
+                                type: "contradiction",
+                                description: `Thoughts ${history[i].thoughtNumber} and ${history[j].thoughtNumber} may contradict on "${pos}/${neg}"`,
+                                involvedThoughts: [history[i].thoughtNumber, history[j].thoughtNumber],
+                                severity: "warning",
+                            });
+                            break;
+                        }
+                    }
+                }
+            }
+        }
+        return patterns;
+    }
+    detectGaps(history, activeStrategy) {
+        const gaps = [];
+        // Check if assumptions are being tracked
+        const hasAssumptions = history.some(t => t.assumptions && t.assumptions.length > 0);
+        if (!hasAssumptions && history.length >= 3) {
+            gaps.push("No assumptions have been made explicit. Consider documenting key assumptions.");
+        }
+        // Check if evidence is being tracked
+        const hasEvidence = history.some(t => t.evidence && t.evidence.length > 0);
+        if (!hasEvidence && history.length >= 5) {
+            gaps.push("No evidence has been cited. Consider linking conclusions to supporting data.");
+        }
+        // Check confidence coverage
+        const withConfidence = history.filter(t => t.confidence !== undefined);
+        if (withConfidence.length < history.length * 0.5 && history.length >= 3) {
+            gaps.push("Less than half of thoughts have confidence scores. Tracking confidence improves analysis.");
+        }
+        // Check branch exploration
+        if (history.length >= 8 && Object.keys(history.filter(t => t.branchId)).length === 0) {
+            gaps.push("No alternative approaches explored. Consider branching to evaluate alternatives.");
+        }
+        return gaps;
+    }
+    checkPractices(history) {
+        const violations = [];
+        const { rules, antiPatterns } = this.config.practices;
+        for (const thought of history) {
+            const textLower = thought.thought.toLowerCase();
+            for (const antiPattern of antiPatterns) {
+                const keywords = tokenize(antiPattern);
+                const thoughtTokens = tokenize(thought.thought);
+                const sim = jaccardSimilarity(keywords, thoughtTokens);
+                if (sim > 0.3) {
+                    violations.push({
+                        rule: antiPattern,
+                        thoughtNumber: thought.thoughtNumber,
+                        explanation: `Thought ${thought.thoughtNumber} may involve an anti-pattern: "${antiPattern}"`,
+                    });
+                }
+            }
+        }
+        return violations;
+    }
+    summarizeProgress(history, branches) {
+        const confidences = history
+            .map(t => t.confidence)
+            .filter((c) => c !== undefined);
+        const avgConfidence = confidences.length > 0
+            ? confidences.reduce((a, b) => a + b, 0) / confidences.length
+            : null;
+        let confidenceTrend = "unknown";
+        if (confidences.length >= 3) {
+            const firstHalf = confidences.slice(0, Math.floor(confidences.length / 2));
+            const secondHalf = confidences.slice(Math.floor(confidences.length / 2));
+            const avgFirst = firstHalf.reduce((a, b) => a + b, 0) / firstHalf.length;
+            const avgSecond = secondHalf.reduce((a, b) => a + b, 0) / secondHalf.length;
+            if (avgSecond - avgFirst > 0.1)
+                confidenceTrend = "rising";
+            else if (avgFirst - avgSecond > 0.1)
+                confidenceTrend = "falling";
+            else
+                confidenceTrend = "stable";
+        }
+        const allTags = history.flatMap(t => t.tags ?? []);
+        const uniqueTopics = new Set(allTags).size;
+        const lastThought = history[history.length - 1];
+        const estimatedCompletion = lastThought
+            ? Math.min(100, Math.round((lastThought.thoughtNumber / lastThought.totalThoughts) * 100))
+            : 0;
+        return {
+            totalThoughts: history.length,
+            uniqueTopics,
+            branchesExplored: Object.keys(branches).length,
+            averageConfidence: avgConfidence,
+            confidenceTrend,
+            estimatedCompletion,
+        };
+    }
+    buildSummary(history, patterns, progress) {
+        const parts = [];
+        parts.push(`${progress.totalThoughts} thoughts recorded, ~${progress.estimatedCompletion}% complete.`);
+        if (progress.branchesExplored > 0) {
+            parts.push(`${progress.branchesExplored} branch(es) explored.`);
+        }
+        if (progress.averageConfidence !== null) {
+            parts.push(`Average confidence: ${Math.round(progress.averageConfidence * 100)}% (${progress.confidenceTrend}).`);
+        }
+        const critical = patterns.filter(p => p.severity === "critical");
+        if (critical.length > 0) {
+            parts.push(`${critical.length} critical issue(s) detected.`);
+        }
+        return parts.join(" ");
+    }
+}
+//# sourceMappingURL=analyzer.js.map

package/server/dist/engine/analyzer.js.map

@@ -0,0 +1 @@
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package/server/dist/engine/strategies.d.ts

@@ -0,0 +1,3 @@
+import type { Strategy } from "../types.js";
+export declare const BUILT_IN_STRATEGIES: Strategy[];
+//# sourceMappingURL=strategies.d.ts.map

package/server/dist/engine/strategies.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"strategies.d.ts","sourceRoot":"","sources":["../../src/engine/strategies.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,aAAa,CAAC;AAE5C,eAAO,MAAM,mBAAmB,EAAE,QAAQ,EAkJzC,CAAC"}

package/server/dist/engine/strategies.js

@@ -0,0 +1,148 @@
+export const BUILT_IN_STRATEGIES = [
+    {
+        name: "first-principles",
+        description: "Decompose assumptions and rebuild understanding from ground truth",
+        whenToUse: "When tackling complex problems where conventional wisdom may be misleading",
+        steps: [
+            "Identify the core problem or question",
+            "List all assumptions being made",
+            "Challenge each assumption — is it actually true?",
+            "Identify the fundamental truths that remain",
+            "Rebuild your understanding from these truths",
+            "Synthesize a solution based on first principles",
+        ],
+        guidingQuestions: [
+            "What am I assuming that might not be true?",
+            "What is the most basic truth I can establish here?",
+            "If I started from scratch, would I arrive at the same conclusion?",
+            "What would a beginner with no assumptions think?",
+        ],
+        reflectChecks: [
+            "Have assumptions been identified and challenged?",
+            "Are conclusions built on verified truths, not inherited beliefs?",
+            "Is the reasoning independent of analogies or precedent?",
+        ],
+    },
+    {
+        name: "red-team",
+        description: "Attack your own conclusions to find weaknesses and blind spots",
+        whenToUse: "When validating important decisions or checking for blind spots",
+        steps: [
+            "State your current position or conclusion clearly",
+            "Assume the position is wrong — find reasons why",
+            "Identify the weakest assumptions in the argument",
+            "Consider adversarial scenarios and edge cases",
+            "Assess: does the position survive the attack?",
+            "Strengthen or revise the position based on findings",
+        ],
+        guidingQuestions: [
+            "If I had to argue against this, what would I say?",
+            "What's the strongest counterargument?",
+            "Under what conditions does this fail?",
+            "Who would disagree with this and why?",
+        ],
+        reflectChecks: [
+            "Has the position been attacked from multiple angles?",
+            "Were counterarguments genuinely strong, not straw men?",
+            "Have edge cases and failure modes been considered?",
+        ],
+    },
+    {
+        name: "convergent",
+        description: "Narrow from many options to one decision through systematic evaluation",
+        whenToUse: "When choosing between multiple viable alternatives",
+        steps: [
+            "List all available options (exhaustively)",
+            "Define evaluation criteria with weights",
+            "Eliminate options that fail must-have criteria",
+            "Score remaining options against weighted criteria",
+            "Identify the top 2-3 options",
+            "Make a final decision with documented rationale",
+        ],
+        guidingQuestions: [
+            "Have I considered all reasonable alternatives?",
+            "Are my criteria reflecting actual priorities?",
+            "Am I weighting criteria correctly?",
+            "Would I defend this choice to a skeptic?",
+        ],
+        reflectChecks: [
+            "Were at least 3 alternatives considered?",
+            "Are criteria defined and weighted?",
+            "Is there a clear winner with documented rationale?",
+        ],
+    },
+    {
+        name: "divergent",
+        description: "Generate ideas freely without judgment — quantity over quality",
+        whenToUse: "When brainstorming, exploring possibilities, or stuck on a problem",
+        steps: [
+            "State the seed idea or problem",
+            "Generate as many ideas as possible (no filtering)",
+            "Branch freely — wild ideas welcome",
+            "Combine and remix ideas",
+            "Group similar ideas into themes",
+            "Select promising ideas for deeper exploration",
+        ],
+        guidingQuestions: [
+            "What's the most unconventional approach?",
+            "What would the opposite solution look like?",
+            "Can I combine two existing ideas into something new?",
+            "What constraint could I remove to enable new possibilities?",
+        ],
+        reflectChecks: [
+            "Were at least 5 distinct ideas generated?",
+            "Was judgment deferred during ideation?",
+            "Were ideas combined or remixed?",
+        ],
+    },
+    {
+        name: "root-cause",
+        description: "Systematic investigation to find the real cause, not just symptoms",
+        whenToUse: "When debugging, investigating failures, or diagnosing problems",
+        steps: [
+            "Describe the observed symptoms precisely",
+            "Ask 'why?' to dig deeper (5 whys technique)",
+            "Map potential causes (fishbone/Ishikawa)",
+            "Eliminate causes through evidence",
+            "Isolate the root cause",
+            "Verify by predicting: if this is the cause, what else should be true?",
+        ],
+        guidingQuestions: [
+            "Am I solving the symptom or the root cause?",
+            "What changed recently that could explain this?",
+            "Can I reproduce this consistently?",
+            "What evidence would disprove my current theory?",
+        ],
+        reflectChecks: [
+            "Were at least 3 levels of 'why' explored?",
+            "Was the root cause verified with evidence?",
+            "Were alternative causes considered and eliminated?",
+        ],
+    },
+    {
+        name: "decision-matrix",
+        description: "Structured comparison of alternatives using weighted criteria",
+        whenToUse: "When making high-stakes decisions with multiple factors to balance",
+        steps: [
+            "Define the decision to be made",
+            "List all viable options",
+            "Define criteria (functional, non-functional, business, technical)",
+            "Assign weights to criteria (must total 100%)",
+            "Score each option against each criterion (1-5)",
+            "Calculate weighted scores",
+            "Document the recommendation with rationale",
+        ],
+        guidingQuestions: [
+            "Are all stakeholder concerns represented in the criteria?",
+            "Am I biased toward any option?",
+            "What's the cost of being wrong?",
+            "Is there a reversible option that scores well enough?",
+        ],
+        reflectChecks: [
+            "Are criteria weighted and documented?",
+            "Were scores justified, not arbitrary?",
+            "Was the recommendation clearly stated with rationale?",
+        ],
+    },
+];
+//# sourceMappingURL=strategies.js.map

package/server/dist/engine/strategies.js.map

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package/server/dist/engine/thought-store.d.ts

@@ -0,0 +1,33 @@
+import type { ThoughtData, StoredThought, DeepThinkConfig } from "../types.js";
+export declare class ThoughtStore {
+    private thoughtHistory;
+    private branches;
+    private activeStrategy;
+    private sessionId;
+    private config;
+    constructor(config: DeepThinkConfig);
+    addThought(input: ThoughtData): StoredThought;
+    getThought(thoughtNumber: number): StoredThought | undefined;
+    getHistory(): StoredThought[];
+    getBranches(): Record<string, StoredThought[]>;
+    getBranchIds(): string[];
+    getBranch(branchId: string): StoredThought[];
+    getActiveStrategy(): string | null;
+    setActiveStrategy(strategy: string | null): void;
+    getSessionId(): string;
+    getConfig(): DeepThinkConfig;
+    clear(): void;
+    serialize(): {
+        thoughtHistory: StoredThought[];
+        branches: Record<string, StoredThought[]>;
+        activeStrategy: string | null;
+        sessionId: string;
+    };
+    restore(data: {
+        thoughtHistory: StoredThought[];
+        branches: Record<string, StoredThought[]>;
+        activeStrategy: string | null;
+        sessionId: string;
+    }): void;
+}
+//# sourceMappingURL=thought-store.d.ts.map

package/server/dist/engine/thought-store.d.ts.map

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package/server/dist/engine/thought-store.js

@@ -0,0 +1,77 @@
+export class ThoughtStore {
+    thoughtHistory = [];
+    branches = {};
+    activeStrategy = null;
+    sessionId;
+    config;
+    constructor(config) {
+        this.config = config;
+        this.sessionId = crypto.randomUUID();
+        this.activeStrategy = config.thinking.defaultStrategy;
+    }
+    addThought(input) {
+        if (input.thoughtNumber > input.totalThoughts) {
+            input.totalThoughts = input.thoughtNumber;
+        }
+        const stored = {
+            ...input,
+            timestamp: new Date().toISOString(),
+            sessionId: this.sessionId,
+        };
+        this.thoughtHistory.push(stored);
+        if (input.branchFromThought && input.branchId) {
+            if (!this.branches[input.branchId]) {
+                this.branches[input.branchId] = [];
+            }
+            this.branches[input.branchId].push(stored);
+        }
+        return stored;
+    }
+    getThought(thoughtNumber) {
+        return this.thoughtHistory.find(t => t.thoughtNumber === thoughtNumber);
+    }
+    getHistory() {
+        return [...this.thoughtHistory];
+    }
+    getBranches() {
+        return { ...this.branches };
+    }
+    getBranchIds() {
+        return Object.keys(this.branches);
+    }
+    getBranch(branchId) {
+        return this.branches[branchId] ? [...this.branches[branchId]] : [];
+    }
+    getActiveStrategy() {
+        return this.activeStrategy;
+    }
+    setActiveStrategy(strategy) {
+        this.activeStrategy = strategy;
+    }
+    getSessionId() {
+        return this.sessionId;
+    }
+    getConfig() {
+        return this.config;
+    }
+    clear() {
+        this.thoughtHistory = [];
+        this.branches = {};
+    }
+    // Serialization for checkpointing
+    serialize() {
+        return {
+            thoughtHistory: this.thoughtHistory,
+            branches: this.branches,
+            activeStrategy: this.activeStrategy,
+            sessionId: this.sessionId,
+        };
+    }
+    restore(data) {
+        this.thoughtHistory = data.thoughtHistory;
+        this.branches = data.branches;
+        this.activeStrategy = data.activeStrategy;
+        this.sessionId = data.sessionId;
+    }
+}
+//# sourceMappingURL=thought-store.js.map

package/server/dist/engine/thought-store.js.map

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package/server/dist/index.d.ts

@@ -0,0 +1,3 @@
+#!/usr/bin/env node
+export {};
+//# sourceMappingURL=index.d.ts.map

package/server/dist/index.d.ts.map

@@ -0,0 +1 @@
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