@biongff/vizarr 1.1.1 → 1.3.0

package/python/src/vizarr/_widget.js

@@ -1,113 +0,0 @@
-import * as vizarr from "https://hms-dbmi.github.io/vizarr/index.js";
-import debounce from "https://esm.sh/just-debounce-it@3";
-
-/**
- * @template T
- * @param {import("npm:@anywidget/types").AnyModel} model
- * @param {any} payload
- * @param {{ timeout?: number }} [options]
- * @returns {Promise<{ data: T, buffers: DataView[] }>}
- */
-function send(model, payload, { timeout = 3000 } = {}) {
-	let uuid = globalThis.crypto.randomUUID();
-	return new Promise((resolve, reject) => {
-		let timer = setTimeout(() => {
-			reject(new Error(`Promise timed out after ${timeout} ms`));
-			model.off("msg:custom", handler);
-		}, timeout);
-		/**
-		 * @param {{ uuid: string, payload: T }} msg
-		 * @param {DataView[]} buffers
-		 */
-		function handler(msg, buffers) {
-			if (!(msg.uuid === uuid)) return;
-			clearTimeout(timer);
-			resolve({ data: msg.payload, buffers });
-			model.off("msg:custom", handler);
-		}
-		model.on("msg:custom", handler);
-		model.send({ payload, uuid });
-	});
-}
-
-/**
- * @param {import("npm:@anywidget/types").AnyModel} model
- * @param {string | { id: string }} source
- */
-function get_source(model, source) {
-	if (typeof source === "string") {
-		return source;
-	}
-	// create a python
-	return {
-		/**
-		 * @param {string} key
-		 * @return {Promise<Uint8Array | undefined>}
-		 */
-		async get(key) {
-			const { data, buffers } = await send(model, {
-				type: "get",
-				source_id: source.id,
-				key,
-			});
-			if (!data.success) {
-				return undefined;
-			}
-			return new Uint8Array(buffers[0].buffer);
-		},
-	};
-}
-
-/**
- * @typedef Model
- * @property {string} height
- * @property {ViewState=} view_state
- * @property {{ source: string | { id: string }}[]} _configs
- */
-
-/**
- * @typedef ViewState
- * @property {number} zoom
- * @property {[x: number, y: number]} target
- */
-
-export default {
-	/** @type {import("npm:@anywidget/types").Render<Model>} */
-	async render({ model, el }) {
-		let div = document.createElement("div");
-		{
-			div.style.height = model.get("height");
-			div.style.backgroundColor = "black";
-			model.on("change:height", () => {
-				div.style.height = model.get("height");
-			});
-		}
-		let viewer = await vizarr.createViewer(div);
-		{
-			model.on("change:view_state", () => {
-				viewer.setViewState(model.get("view_state"));
-			});
-			viewer.on(
-				"viewStateChange",
-				debounce((/** @type {ViewState} */ update) => {
-					model.set("view_state", update);
-					model.save_changes();
-				}, 200),
-			);
-		}
-		{
-			// sources are append-only now
-			for (const config of model.get("_configs")) {
-				const source = get_source(model, config.source);
-				viewer.addImage({ ...config, source });
-			}
-			model.on("change:_configs", () => {
-				const last = model.get("_configs").at(-1);
-				if (!last) return;
-				const source = get_source(model, last.source);
-				viewer.addImage({ ...last, source });
-			});
-		}
-		el.appendChild(div);
-	},
-};

package/python/src/vizarr/_widget.py

@@ -1,67 +0,0 @@
-import anywidget
-import traitlets
-import pathlib
-
-import zarr
-import numpy as np
-
-__all__ = ["Viewer"]
-
-
-def _store_keyprefix(obj):
-    # Just grab the store and key_prefix from zarr.Array and zarr.Group objects
-    if isinstance(obj, (zarr.Array, zarr.Group)):
-        return obj.store, obj._key_prefix
-
-    if isinstance(obj, np.ndarray):
-        # Create an in-memory store, and write array as as single chunk
-        store = {}
-        arr = zarr.create(
-            store=store, shape=obj.shape, chunks=obj.shape, dtype=obj.dtype
-        )
-        arr[:] = obj
-        return store, ""
-
-    if hasattr(obj, "__getitem__") and hasattr(obj, "__contains__"):
-        return obj, ""
-
-    raise TypeError("Cannot normalize store path")
-
-
-class Viewer(anywidget.AnyWidget):
-    _esm = pathlib.Path(__file__).parent / "_widget.js"
-    _configs = traitlets.List().tag(sync=True)
-    view_state = traitlets.Dict().tag(sync=True)
-    height = traitlets.Unicode("500px").tag(sync=True)
-
-    def __init__(self, **kwargs):
-        super().__init__(**kwargs)
-        self._store_paths = []
-        self.on_msg(self._handle_custom_msg)
-
-    def _handle_custom_msg(self, msg, buffers):
-        store, key_prefix = self._store_paths[msg["payload"]["source_id"]]
-        key = key_prefix + msg["payload"]["key"].lstrip("/")
-
-        if msg["payload"]["type"] == "has":
-            self.send({"uuid": msg["uuid"], "payload": key in store})
-            return
-
-        if msg["payload"]["type"] == "get":
-            try:
-                buffers = [store[key]]
-            except KeyError:
-                buffers = []
-            self.send(
-                {"uuid": msg["uuid"], "payload": {"success": len(buffers) == 1}},
-                buffers,
-            )
-            return
-
-    def add_image(self, source, **config):
-        if not isinstance(source, str):
-            store, key_prefix = _store_keyprefix(source)
-            source = {"id": len(self._store_paths)}
-            self._store_paths.append((store, key_prefix))
-        config["source"] = source
-        self._configs = self._configs + [config]