@biongff/vizarr 0.3.0-dev.2025-11-12.283baee9

package/src/theme.ts

@@ -0,0 +1,80 @@
+import { grey } from "@mui/material/colors";
+import { createTheme } from "@mui/material/styles";
+
+export default createTheme({
+  palette: {
+    mode: "dark",
+    primary: { main: grey[500] },
+    secondary: { main: grey[500] },
+  },
+  components: {
+    MuiButton: {
+      defaultProps: { size: "small" },
+    },
+    MuiButtonBase: {
+      defaultProps: { disableRipple: true },
+    },
+    MuiFilledInput: {
+      defaultProps: { margin: "dense" },
+    },
+    MuiFormControl: {
+      defaultProps: { margin: "dense" },
+    },
+    MuiFormHelperText: {
+      defaultProps: { margin: "dense" },
+    },
+    MuiIconButton: {
+      defaultProps: { size: "small" },
+    },
+    MuiInputBase: {
+      defaultProps: { margin: "dense" },
+    },
+    MuiInputLabel: {
+      defaultProps: { margin: "dense" },
+    },
+    MuiOutlinedInput: {
+      defaultProps: { margin: "dense" },
+    },
+
+    MuiSlider: {
+      defaultProps: {
+        size: "small",
+      },
+      styleOverrides: {
+        thumb: {
+          "&:focus, &:hover": {
+            boxShadow: "none",
+          },
+          height: 11,
+          width: 5,
+          borderRadius: "15%",
+          marginLeft: -1,
+        },
+      },
+    },
+    MuiInput: {
+      styleOverrides: {
+        underline: {
+          "&&&&:hover:before": {
+            borderBottom: "1px solid #fff",
+          },
+        },
+      },
+    },
+    MuiPaper: {
+      styleOverrides: {
+        root: {
+          backgroundColor: "rgba(0, 0, 0, 0.8)",
+        },
+      },
+    },
+    MuiSvgIcon: {
+      styleOverrides: {
+        root: {
+          width: "0.7em",
+          height: "0.7em",
+        },
+      },
+    },
+  },
+});

package/src/types.ts

@@ -0,0 +1,112 @@
+declare namespace Ome {
+  type Version = "0.1";
+
+  interface Channel {
+    active: boolean;
+    coefficient: number;
+    color: string;
+    family: string;
+    inverted: boolean;
+    label?: string;
+    window: {
+      end: number;
+      max?: number;
+      min?: number;
+      start: number;
+    };
+  }
+
+  interface Omero {
+    id: number;
+    name?: string;
+    version: Version;
+    channels: Channel[];
+    rdefs: {
+      defaultT?: number;
+      defaultZ?: number;
+      model: "color" | "greyscale";
+    };
+  }
+
+  interface Axis {
+    name: string;
+    type?: string;
+    unit?: string;
+  }
+
+  type CoordinateTransformation =
+    | {
+        type: "scale";
+        scale: Array<number>;
+      }
+    | {
+        type: "translation";
+        translation: Array<number>;
+      };
+
+  interface Dataset {
+    path: string;
+    coordinateTransformations?: Array<CoordinateTransformation>;
+  }
+
+  interface Multiscale {
+    datasets: Array<Dataset>;
+    version?: string;
+    axes?: string[] | Axis[];
+  }
+
+  interface Bioformats2rawlayout {
+    "bioformats2raw.layout": 3;
+  }
+
+  interface Acquisition {
+    id: number;
+    name?: string;
+    maximumfieldcount?: number;
+    description?: string;
+    starttime?: number;
+    /**
+     * @deprecated
+     */
+    path?: string;
+  }
+
+  interface Plate {
+    acquisitions?: Acquisition[];
+    columns: { name: string }[];
+    field_count: 4;
+    name: string;
+    rows: { name: string }[];
+    version: Version;
+    wells: { path: string }[];
+  }
+
+  interface Well {
+    images: { path: string; acquisition?: number }[];
+    version: Version;
+  }
+
+  interface ImageLabel {
+    version: Version;
+    colors?: Array<{
+      "label-value": number;
+      rgba: [r: number, g: number, b: number, a: number];
+    }>;
+    properties?: Array<{
+      "label-value": number;
+      "omero:roiId": number;
+      "omero:shapeId": number;
+    }>;
+    /** Location of source image */
+    source: {
+      image: string;
+    };
+  }
+
+  type Attrs =
+    | { multiscales: Multiscale[] }
+    | { omero: Omero; multiscales: Multiscale[] }
+    | { plate: Plate }
+    | { well: Well }
+    | { "image-label": ImageLabel; multiscales: Multiscale[] };
+}