@biolm/biolm-models-mcp 0.2.0

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Files changed (153) hide show
  1. package/LICENSE +201 -0
  2. package/README.md +95 -0
  3. package/auth.d.mts +6 -0
  4. package/auth.d.mts.map +1 -0
  5. package/auth.d.ts +6 -0
  6. package/auth.d.ts.map +1 -0
  7. package/auth.js +37 -0
  8. package/auth.js.map +1 -0
  9. package/auth.mjs +32 -0
  10. package/auth.mjs.map +1 -0
  11. package/code-tool-paths.cjs +8 -0
  12. package/code-tool-paths.cjs.map +1 -0
  13. package/code-tool-paths.d.cts +2 -0
  14. package/code-tool-paths.d.cts.map +1 -0
  15. package/code-tool-types.d.mts +14 -0
  16. package/code-tool-types.d.mts.map +1 -0
  17. package/code-tool-types.d.ts +14 -0
  18. package/code-tool-types.d.ts.map +1 -0
  19. package/code-tool-types.js +4 -0
  20. package/code-tool-types.js.map +1 -0
  21. package/code-tool-types.mjs +3 -0
  22. package/code-tool-types.mjs.map +1 -0
  23. package/code-tool-worker.d.mts +5 -0
  24. package/code-tool-worker.d.mts.map +1 -0
  25. package/code-tool-worker.d.ts +5 -0
  26. package/code-tool-worker.d.ts.map +1 -0
  27. package/code-tool-worker.js +286 -0
  28. package/code-tool-worker.js.map +1 -0
  29. package/code-tool-worker.mjs +248 -0
  30. package/code-tool-worker.mjs.map +1 -0
  31. package/code-tool.d.mts +21 -0
  32. package/code-tool.d.mts.map +1 -0
  33. package/code-tool.d.ts +21 -0
  34. package/code-tool.d.ts.map +1 -0
  35. package/code-tool.js +336 -0
  36. package/code-tool.js.map +1 -0
  37. package/code-tool.mjs +300 -0
  38. package/code-tool.mjs.map +1 -0
  39. package/docs-search-tool.d.mts +59 -0
  40. package/docs-search-tool.d.mts.map +1 -0
  41. package/docs-search-tool.d.ts +59 -0
  42. package/docs-search-tool.d.ts.map +1 -0
  43. package/docs-search-tool.js +104 -0
  44. package/docs-search-tool.js.map +1 -0
  45. package/docs-search-tool.mjs +99 -0
  46. package/docs-search-tool.mjs.map +1 -0
  47. package/http.d.mts +12 -0
  48. package/http.d.mts.map +1 -0
  49. package/http.d.ts +12 -0
  50. package/http.d.ts.map +1 -0
  51. package/http.js +224 -0
  52. package/http.js.map +1 -0
  53. package/http.mjs +216 -0
  54. package/http.mjs.map +1 -0
  55. package/index.d.mts +3 -0
  56. package/index.d.mts.map +1 -0
  57. package/index.d.ts +3 -0
  58. package/index.d.ts.map +1 -0
  59. package/index.js +60 -0
  60. package/index.js.map +1 -0
  61. package/index.mjs +58 -0
  62. package/index.mjs.map +1 -0
  63. package/instructions.d.mts +5 -0
  64. package/instructions.d.mts.map +1 -0
  65. package/instructions.d.ts +5 -0
  66. package/instructions.d.ts.map +1 -0
  67. package/instructions.js +62 -0
  68. package/instructions.js.map +1 -0
  69. package/instructions.mjs +56 -0
  70. package/instructions.mjs.map +1 -0
  71. package/local-docs-search.d.mts +28 -0
  72. package/local-docs-search.d.mts.map +1 -0
  73. package/local-docs-search.d.ts +28 -0
  74. package/local-docs-search.d.ts.map +1 -0
  75. package/local-docs-search.js +797 -0
  76. package/local-docs-search.js.map +1 -0
  77. package/local-docs-search.mjs +757 -0
  78. package/local-docs-search.mjs.map +1 -0
  79. package/logger.d.mts +7 -0
  80. package/logger.d.mts.map +1 -0
  81. package/logger.d.ts +7 -0
  82. package/logger.d.ts.map +1 -0
  83. package/logger.js +29 -0
  84. package/logger.js.map +1 -0
  85. package/logger.mjs +22 -0
  86. package/logger.mjs.map +1 -0
  87. package/methods.d.mts +10 -0
  88. package/methods.d.mts.map +1 -0
  89. package/methods.d.ts +10 -0
  90. package/methods.d.ts.map +1 -0
  91. package/methods.js +761 -0
  92. package/methods.js.map +1 -0
  93. package/methods.mjs +757 -0
  94. package/methods.mjs.map +1 -0
  95. package/options.d.mts +23 -0
  96. package/options.d.mts.map +1 -0
  97. package/options.d.ts +23 -0
  98. package/options.d.ts.map +1 -0
  99. package/options.js +141 -0
  100. package/options.js.map +1 -0
  101. package/options.mjs +134 -0
  102. package/options.mjs.map +1 -0
  103. package/package.json +236 -0
  104. package/server.d.mts +38 -0
  105. package/server.d.mts.map +1 -0
  106. package/server.d.ts +38 -0
  107. package/server.d.ts.map +1 -0
  108. package/server.js +170 -0
  109. package/server.js.map +1 -0
  110. package/server.mjs +160 -0
  111. package/server.mjs.map +1 -0
  112. package/src/auth.ts +42 -0
  113. package/src/code-tool-paths.cts +5 -0
  114. package/src/code-tool-types.ts +17 -0
  115. package/src/code-tool-worker.ts +299 -0
  116. package/src/code-tool.ts +390 -0
  117. package/src/docs-search-tool.ts +138 -0
  118. package/src/http.ts +266 -0
  119. package/src/index.ts +67 -0
  120. package/src/instructions.ts +84 -0
  121. package/src/local-docs-search.ts +901 -0
  122. package/src/logger.ts +28 -0
  123. package/src/methods.ts +782 -0
  124. package/src/options.ts +185 -0
  125. package/src/server.ts +210 -0
  126. package/src/stdio.ts +17 -0
  127. package/src/tsconfig.json +11 -0
  128. package/src/types.ts +126 -0
  129. package/src/util.ts +25 -0
  130. package/stdio.d.mts +3 -0
  131. package/stdio.d.mts.map +1 -0
  132. package/stdio.d.ts +3 -0
  133. package/stdio.d.ts.map +1 -0
  134. package/stdio.js +18 -0
  135. package/stdio.js.map +1 -0
  136. package/stdio.mjs +14 -0
  137. package/stdio.mjs.map +1 -0
  138. package/types.d.mts +65 -0
  139. package/types.d.mts.map +1 -0
  140. package/types.d.ts +65 -0
  141. package/types.d.ts.map +1 -0
  142. package/types.js +58 -0
  143. package/types.js.map +1 -0
  144. package/types.mjs +53 -0
  145. package/types.mjs.map +1 -0
  146. package/util.d.mts +4 -0
  147. package/util.d.mts.map +1 -0
  148. package/util.d.ts +4 -0
  149. package/util.d.ts.map +1 -0
  150. package/util.js +30 -0
  151. package/util.js.map +1 -0
  152. package/util.mjs +24 -0
  153. package/util.mjs.map +1 -0
package/methods.mjs ADDED
@@ -0,0 +1,757 @@
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+ // File generated from our OpenAPI spec by Stainless. See CONTRIBUTING.md for details.
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+ export const sdkMethods = [
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+ {
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+ clientCallName: 'client.v3.ablang2.encode',
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+ fullyQualifiedName: 'v3.ablang2.encode',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/ablang2/encode/',
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+ },
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+ {
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+ clientCallName: 'client.v3.ablang2.predict',
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+ fullyQualifiedName: 'v3.ablang2.predict',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/ablang2/predict/',
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+ },
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+ {
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+ clientCallName: 'client.v3.abodybuilder2.predict',
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+ fullyQualifiedName: 'v3.abodybuilder2.predict',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/abodybuilder2/predict/',
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+ },
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+ {
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+ clientCallName: 'client.v3.abodybuilder3Language.predict',
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+ fullyQualifiedName: 'v3.abodybuilder3Language.predict',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/abodybuilder3-language/predict/',
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+ },
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+ {
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+ clientCallName: 'client.v3.abodybuilder3Plddt.predict',
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+ fullyQualifiedName: 'v3.abodybuilder3Plddt.predict',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/abodybuilder3-plddt/predict/',
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+ },
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+ {
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+ clientCallName: 'client.v3.alphafold2.encode',
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+ fullyQualifiedName: 'v3.alphafold2.encode',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/alphafold2/encode/',
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+ },
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+ {
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+ clientCallName: 'client.v3.alphafold2.predict',
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+ fullyQualifiedName: 'v3.alphafold2.predict',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/alphafold2/predict/',
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+ },
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+ {
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+ clientCallName: 'client.v3.antifold.encode',
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+ fullyQualifiedName: 'v3.antifold.encode',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/antifold/encode/',
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+ },
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+ {
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+ clientCallName: 'client.v3.antifold.generate',
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+ fullyQualifiedName: 'v3.antifold.generate',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/antifold/generate/',
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+ },
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+ {
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+ clientCallName: 'client.v3.antifold.predict',
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+ fullyQualifiedName: 'v3.antifold.predict',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/antifold/predict/',
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+ },
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+ {
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+ clientCallName: 'client.v3.biolmAblef.encode',
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+ fullyQualifiedName: 'v3.biolmAblef.encode',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/biolm-ablef/encode/',
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+ },
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+ {
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+ clientCallName: 'client.v3.biolmAblef.predict',
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+ fullyQualifiedName: 'v3.biolmAblef.predict',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/biolm-ablef/predict/',
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+ },
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+ {
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+ clientCallName: 'client.v3.biolmsol.predict',
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+ fullyQualifiedName: 'v3.biolmsol.predict',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/biolmsol/predict/',
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+ },
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+ {
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+ clientCallName: 'client.v3.biolmtox2.encode',
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+ fullyQualifiedName: 'v3.biolmtox2.encode',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/biolmtox2/encode/',
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+ },
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+ {
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+ clientCallName: 'client.v3.biolmtox2.predict',
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+ fullyQualifiedName: 'v3.biolmtox2.predict',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/biolmtox2/predict/',
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+ },
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+ {
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+ clientCallName: 'client.v3.biotite.predict',
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+ fullyQualifiedName: 'v3.biotite.predict',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/biotite/predict/',
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+ },
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+ {
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+ clientCallName: 'client.v3.boltz2.predict',
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+ fullyQualifiedName: 'v3.boltz2.predict',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/boltz2/predict/',
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+ },
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+ {
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+ clientCallName: 'client.v3.chai1.predict',
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+ fullyQualifiedName: 'v3.chai1.predict',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/chai1/predict/',
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+ {
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+ clientCallName: 'client.v3.clean.encode',
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+ fullyQualifiedName: 'v3.clean.encode',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/clean/encode/',
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+ },
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+ {
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+ clientCallName: 'client.v3.clean.predict',
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+ fullyQualifiedName: 'v3.clean.predict',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/clean/predict/',
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+ },
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+ {
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+ clientCallName: 'client.v3.deepviscosity.predict',
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+ fullyQualifiedName: 'v3.deepviscosity.predict',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/deepviscosity/predict/',
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+ },
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+ {
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+ clientCallName: 'client.v3.diamond.predict',
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+ fullyQualifiedName: 'v3.diamond.predict',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/diamond/predict/',
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+ {
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+ clientCallName: 'client.v3.dnaChisel.predict',
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+ fullyQualifiedName: 'v3.dnaChisel.predict',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/dna-chisel/predict/',
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+ },
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+ {
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+ clientCallName: 'client.v3.dnabert2.encode',
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+ fullyQualifiedName: 'v3.dnabert2.encode',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/dnabert2/encode/',
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+ },
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+ {
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+ clientCallName: 'client.v3.dnabert2.predict',
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+ fullyQualifiedName: 'v3.dnabert2.predict',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/dnabert2/predict/',
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+ },
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+ {
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+ clientCallName: 'client.v3.dsm150mBase.encode',
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+ fullyQualifiedName: 'v3.dsm150mBase.encode',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/dsm-150m-base/encode/',
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+ },
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+ {
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+ clientCallName: 'client.v3.dsm150mBase.generate',
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+ fullyQualifiedName: 'v3.dsm150mBase.generate',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/dsm-150m-base/generate/',
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+ },
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+ {
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+ clientCallName: 'client.v3.dsm150mBase.predict',
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+ fullyQualifiedName: 'v3.dsm150mBase.predict',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/dsm-150m-base/predict/',
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+ },
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+ {
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+ clientCallName: 'client.v3.dsm650mBase.encode',
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+ fullyQualifiedName: 'v3.dsm650mBase.encode',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/dsm-650m-base/encode/',
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+ },
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+ {
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+ clientCallName: 'client.v3.dsm650mBase.generate',
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+ fullyQualifiedName: 'v3.dsm650mBase.generate',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/dsm-650m-base/generate/',
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+ },
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+ {
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+ clientCallName: 'client.v3.dsm650mBase.predict',
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+ fullyQualifiedName: 'v3.dsm650mBase.predict',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/dsm-650m-base/predict/',
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+ },
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+ {
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+ clientCallName: 'client.v3.dsm650mPpi.encode',
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+ fullyQualifiedName: 'v3.dsm650mPpi.encode',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/dsm-650m-ppi/encode/',
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+ },
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+ {
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+ clientCallName: 'client.v3.dsm650mPpi.generate',
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+ fullyQualifiedName: 'v3.dsm650mPpi.generate',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/dsm-650m-ppi/generate/',
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+ {
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+ clientCallName: 'client.v3.dsm650mPpi.predict',
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+ fullyQualifiedName: 'v3.dsm650mPpi.predict',
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+ httpMethod: 'post',
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+ {
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+ clientCallName: 'client.v3.e1_150m.encode',
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+ fullyQualifiedName: 'v3.e1_150m.encode',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/e1-150m/encode/',
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+ },
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+ {
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+ clientCallName: 'client.v3.e1_150m.predict',
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+ fullyQualifiedName: 'v3.e1_150m.predict',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/e1-150m/predict/',
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+ {
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+ clientCallName: 'client.v3.e1_300m.encode',
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+ fullyQualifiedName: 'v3.e1_300m.encode',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/e1-300m/encode/',
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+ },
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+ {
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+ clientCallName: 'client.v3.e1_300m.predict',
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+ fullyQualifiedName: 'v3.e1_300m.predict',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/e1-300m/predict/',
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+ {
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+ clientCallName: 'client.v3.e1_600m.encode',
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+ fullyQualifiedName: 'v3.e1_600m.encode',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/e1-600m/encode/',
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+ {
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+ clientCallName: 'client.v3.e1_600m.predict',
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+ fullyQualifiedName: 'v3.e1_600m.predict',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/e1-600m/predict/',
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+ clientCallName: 'client.v3.esmIf1.generate',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/esm-if1/generate/',
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+ {
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+ clientCallName: 'client.v3.esm1b.encode',
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+ httpMethod: 'post',
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+ {
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+ clientCallName: 'client.v3.esm1b.predict',
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+ fullyQualifiedName: 'v3.esm1b.predict',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/esm1b/predict/',
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+ {
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+ clientCallName: 'client.v3.esm1vAll.predict',
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+ fullyQualifiedName: 'v3.esm1vAll.predict',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/esm1v-all/predict/',
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+ {
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+ clientCallName: 'client.v3.esm2_150m.encode',
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+ fullyQualifiedName: 'v3.esm2_150m.encode',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/esm2-150m/encode/',
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+ },
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+ {
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+ clientCallName: 'client.v3.esm2_150m.predict',
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+ fullyQualifiedName: 'v3.esm2_150m.predict',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/esm2-150m/predict/',
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+ },
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+ {
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+ clientCallName: 'client.v3.esm2_35m.encode',
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+ fullyQualifiedName: 'v3.esm2_35m.encode',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/esm2-35m/encode/',
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+ {
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+ clientCallName: 'client.v3.esm2_35m.predict',
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+ fullyQualifiedName: 'v3.esm2_35m.predict',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/esm2-35m/predict/',
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+ },
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+ {
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+ clientCallName: 'client.v3.esm2_3b.encode',
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+ fullyQualifiedName: 'v3.esm2_3b.encode',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/esm2-3b/encode/',
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+ },
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+ {
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+ clientCallName: 'client.v3.esm2_3b.predict',
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+ fullyQualifiedName: 'v3.esm2_3b.predict',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/esm2-3b/predict/',
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+ {
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+ clientCallName: 'client.v3.esm2_650m.encode',
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+ fullyQualifiedName: 'v3.esm2_650m.encode',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/esm2-650m/encode/',
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+ {
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+ clientCallName: 'client.v3.esm2_650m.predict',
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+ fullyQualifiedName: 'v3.esm2_650m.predict',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/esm2-650m/predict/',
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+ {
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+ clientCallName: 'client.v3.esm2_8m.encode',
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+ httpPath: '/api/v3/esm2-8m/predict/',
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+ clientCallName: 'client.v3.esm2stabp.predict',
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+ httpMethod: 'post',
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+ httpPath: '/api/v3/esm2stabp/predict/',
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+ {
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+ clientCallName: 'client.v3.esmc300m.encode',
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+ fullyQualifiedName: 'v3.esmc300m.encode',
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+ httpMethod: 'post',
337
+ httpPath: '/api/v3/esmc-300m/encode/',
338
+ },
339
+ {
340
+ clientCallName: 'client.v3.esmc300m.predict',
341
+ fullyQualifiedName: 'v3.esmc300m.predict',
342
+ httpMethod: 'post',
343
+ httpPath: '/api/v3/esmc-300m/predict/',
344
+ },
345
+ {
346
+ clientCallName: 'client.v3.esmc600m.encode',
347
+ fullyQualifiedName: 'v3.esmc600m.encode',
348
+ httpMethod: 'post',
349
+ httpPath: '/api/v3/esmc-600m/encode/',
350
+ },
351
+ {
352
+ clientCallName: 'client.v3.esmc600m.predict',
353
+ fullyQualifiedName: 'v3.esmc600m.predict',
354
+ httpMethod: 'post',
355
+ httpPath: '/api/v3/esmc-600m/predict/',
356
+ },
357
+ {
358
+ clientCallName: 'client.v3.esmfold.predict',
359
+ fullyQualifiedName: 'v3.esmfold.predict',
360
+ httpMethod: 'post',
361
+ httpPath: '/api/v3/esmfold/predict/',
362
+ },
363
+ {
364
+ clientCallName: 'client.v3.evo15_8kBase.generate',
365
+ fullyQualifiedName: 'v3.evo15_8kBase.generate',
366
+ httpMethod: 'post',
367
+ httpPath: '/api/v3/evo-15-8k-base/generate/',
368
+ },
369
+ {
370
+ clientCallName: 'client.v3.evo15_8kBase.predict',
371
+ fullyQualifiedName: 'v3.evo15_8kBase.predict',
372
+ httpMethod: 'post',
373
+ httpPath: '/api/v3/evo-15-8k-base/predict/',
374
+ },
375
+ {
376
+ clientCallName: 'client.v3.evo2_1bBase.encode',
377
+ fullyQualifiedName: 'v3.evo2_1bBase.encode',
378
+ httpMethod: 'post',
379
+ httpPath: '/api/v3/evo2-1b-base/encode/',
380
+ },
381
+ {
382
+ clientCallName: 'client.v3.evo2_1bBase.generate',
383
+ fullyQualifiedName: 'v3.evo2_1bBase.generate',
384
+ httpMethod: 'post',
385
+ httpPath: '/api/v3/evo2-1b-base/generate/',
386
+ },
387
+ {
388
+ clientCallName: 'client.v3.evo2_1bBase.predict',
389
+ fullyQualifiedName: 'v3.evo2_1bBase.predict',
390
+ httpMethod: 'post',
391
+ httpPath: '/api/v3/evo2-1b-base/predict/',
392
+ },
393
+ {
394
+ clientCallName: 'client.v3.finetuneRun.post',
395
+ fullyQualifiedName: 'v3.finetuneRun.post',
396
+ httpMethod: 'post',
397
+ httpPath: '/api/v3/finetune_run/',
398
+ },
399
+ {
400
+ clientCallName: 'client.v3.globalLabelMembraneMpnn.generate',
401
+ fullyQualifiedName: 'v3.globalLabelMembraneMpnn.generate',
402
+ httpMethod: 'post',
403
+ httpPath: '/api/v3/global-label-membrane-mpnn/generate/',
404
+ },
405
+ {
406
+ clientCallName: 'client.v3.hyperMpnn.generate',
407
+ fullyQualifiedName: 'v3.hyperMpnn.generate',
408
+ httpMethod: 'post',
409
+ httpPath: '/api/v3/hyper-mpnn/generate/',
410
+ },
411
+ {
412
+ clientCallName: 'client.v3.igbertPaired.encode',
413
+ fullyQualifiedName: 'v3.igbertPaired.encode',
414
+ httpMethod: 'post',
415
+ httpPath: '/api/v3/igbert-paired/encode/',
416
+ },
417
+ {
418
+ clientCallName: 'client.v3.igbertPaired.generate',
419
+ fullyQualifiedName: 'v3.igbertPaired.generate',
420
+ httpMethod: 'post',
421
+ httpPath: '/api/v3/igbert-paired/generate/',
422
+ },
423
+ {
424
+ clientCallName: 'client.v3.igbertPaired.predict',
425
+ fullyQualifiedName: 'v3.igbertPaired.predict',
426
+ httpMethod: 'post',
427
+ httpPath: '/api/v3/igbert-paired/predict/',
428
+ },
429
+ {
430
+ clientCallName: 'client.v3.igbertUnpaired.encode',
431
+ fullyQualifiedName: 'v3.igbertUnpaired.encode',
432
+ httpMethod: 'post',
433
+ httpPath: '/api/v3/igbert-unpaired/encode/',
434
+ },
435
+ {
436
+ clientCallName: 'client.v3.igbertUnpaired.generate',
437
+ fullyQualifiedName: 'v3.igbertUnpaired.generate',
438
+ httpMethod: 'post',
439
+ httpPath: '/api/v3/igbert-unpaired/generate/',
440
+ },
441
+ {
442
+ clientCallName: 'client.v3.igbertUnpaired.predict',
443
+ fullyQualifiedName: 'v3.igbertUnpaired.predict',
444
+ httpMethod: 'post',
445
+ httpPath: '/api/v3/igbert-unpaired/predict/',
446
+ },
447
+ {
448
+ clientCallName: 'client.v3.igt5Paired.encode',
449
+ fullyQualifiedName: 'v3.igt5Paired.encode',
450
+ httpMethod: 'post',
451
+ httpPath: '/api/v3/igt5-paired/encode/',
452
+ },
453
+ {
454
+ clientCallName: 'client.v3.igt5Unpaired.encode',
455
+ fullyQualifiedName: 'v3.igt5Unpaired.encode',
456
+ httpMethod: 'post',
457
+ httpPath: '/api/v3/igt5-unpaired/encode/',
458
+ },
459
+ {
460
+ clientCallName: 'client.v3.immunefoldAntibody.predict',
461
+ fullyQualifiedName: 'v3.immunefoldAntibody.predict',
462
+ httpMethod: 'post',
463
+ httpPath: '/api/v3/immunefold-antibody/predict/',
464
+ },
465
+ {
466
+ clientCallName: 'client.v3.immunefoldTcr.predict',
467
+ fullyQualifiedName: 'v3.immunefoldTcr.predict',
468
+ httpMethod: 'post',
469
+ httpPath: '/api/v3/immunefold-tcr/predict/',
470
+ },
471
+ {
472
+ clientCallName: 'client.v3.ligandMpnn.generate',
473
+ fullyQualifiedName: 'v3.ligandMpnn.generate',
474
+ httpMethod: 'post',
475
+ httpPath: '/api/v3/ligand-mpnn/generate/',
476
+ },
477
+ {
478
+ clientCallName: 'client.v3.models.demofixedFinetuneProtgpt2Generator15.generate',
479
+ fullyQualifiedName: 'v3.models.demofixedFinetuneProtgpt2Generator15.generate',
480
+ httpMethod: 'post',
481
+ httpPath: '/api/v3/models/demofixed_finetune_protgpt2_generator_15/generate/',
482
+ },
483
+ {
484
+ clientCallName: 'client.v3.msaTransformer.encode',
485
+ fullyQualifiedName: 'v3.msaTransformer.encode',
486
+ httpMethod: 'post',
487
+ httpPath: '/api/v3/msa-transformer/encode/',
488
+ },
489
+ {
490
+ clientCallName: 'client.v3.nanobert.encode',
491
+ fullyQualifiedName: 'v3.nanobert.encode',
492
+ httpMethod: 'post',
493
+ httpPath: '/api/v3/nanobert/encode/',
494
+ },
495
+ {
496
+ clientCallName: 'client.v3.nanobert.generate',
497
+ fullyQualifiedName: 'v3.nanobert.generate',
498
+ httpMethod: 'post',
499
+ httpPath: '/api/v3/nanobert/generate/',
500
+ },
501
+ {
502
+ clientCallName: 'client.v3.nanobert.predict',
503
+ fullyQualifiedName: 'v3.nanobert.predict',
504
+ httpMethod: 'post',
505
+ httpPath: '/api/v3/nanobert/predict/',
506
+ },
507
+ {
508
+ clientCallName: 'client.v3.nanobodybuilder2.predict',
509
+ fullyQualifiedName: 'v3.nanobodybuilder2.predict',
510
+ httpMethod: 'post',
511
+ httpPath: '/api/v3/nanobodybuilder2/predict/',
512
+ },
513
+ {
514
+ clientCallName: 'client.v3.omniDna1b.encode',
515
+ fullyQualifiedName: 'v3.omniDna1b.encode',
516
+ httpMethod: 'post',
517
+ httpPath: '/api/v3/omni-dna-1b/encode/',
518
+ },
519
+ {
520
+ clientCallName: 'client.v3.omniDna1b.predict',
521
+ fullyQualifiedName: 'v3.omniDna1b.predict',
522
+ httpMethod: 'post',
523
+ httpPath: '/api/v3/omni-dna-1b/predict/',
524
+ },
525
+ {
526
+ clientCallName: 'client.v3.peptides.encode',
527
+ fullyQualifiedName: 'v3.peptides.encode',
528
+ httpMethod: 'post',
529
+ httpPath: '/api/v3/peptides/encode/',
530
+ },
531
+ {
532
+ clientCallName: 'client.v3.perResidueLabelMembraneMpnn.generate',
533
+ fullyQualifiedName: 'v3.perResidueLabelMembraneMpnn.generate',
534
+ httpMethod: 'post',
535
+ httpPath: '/api/v3/per-residue-label-membrane-mpnn/generate/',
536
+ },
537
+ {
538
+ clientCallName: 'client.v3.pro4sClassification.predict',
539
+ fullyQualifiedName: 'v3.pro4sClassification.predict',
540
+ httpMethod: 'post',
541
+ httpPath: '/api/v3/pro4s-classification/predict/',
542
+ },
543
+ {
544
+ clientCallName: 'client.v3.pro4sRegression.predict',
545
+ fullyQualifiedName: 'v3.pro4sRegression.predict',
546
+ httpMethod: 'post',
547
+ httpPath: '/api/v3/pro4s-regression/predict/',
548
+ },
549
+ {
550
+ clientCallName: 'client.v3.progen2Bfd90.generate',
551
+ fullyQualifiedName: 'v3.progen2Bfd90.generate',
552
+ httpMethod: 'post',
553
+ httpPath: '/api/v3/progen2-bfd90/generate/',
554
+ },
555
+ {
556
+ clientCallName: 'client.v3.progen2Large.generate',
557
+ fullyQualifiedName: 'v3.progen2Large.generate',
558
+ httpMethod: 'post',
559
+ httpPath: '/api/v3/progen2-large/generate/',
560
+ },
561
+ {
562
+ clientCallName: 'client.v3.progen2Medium.generate',
563
+ fullyQualifiedName: 'v3.progen2Medium.generate',
564
+ httpMethod: 'post',
565
+ httpPath: '/api/v3/progen2-medium/generate/',
566
+ },
567
+ {
568
+ clientCallName: 'client.v3.progen2Oas.generate',
569
+ fullyQualifiedName: 'v3.progen2Oas.generate',
570
+ httpMethod: 'post',
571
+ httpPath: '/api/v3/progen2-oas/generate/',
572
+ },
573
+ {
574
+ clientCallName: 'client.v3.prostt5Aa2fold.encode',
575
+ fullyQualifiedName: 'v3.prostt5Aa2fold.encode',
576
+ httpMethod: 'post',
577
+ httpPath: '/api/v3/prostt5-aa2fold/encode/',
578
+ },
579
+ {
580
+ clientCallName: 'client.v3.prostt5Aa2fold.generate',
581
+ fullyQualifiedName: 'v3.prostt5Aa2fold.generate',
582
+ httpMethod: 'post',
583
+ httpPath: '/api/v3/prostt5-aa2fold/generate/',
584
+ },
585
+ {
586
+ clientCallName: 'client.v3.prostt5Fold2aa.encode',
587
+ fullyQualifiedName: 'v3.prostt5Fold2aa.encode',
588
+ httpMethod: 'post',
589
+ httpPath: '/api/v3/prostt5-fold2aa/encode/',
590
+ },
591
+ {
592
+ clientCallName: 'client.v3.prostt5Fold2aa.generate',
593
+ fullyQualifiedName: 'v3.prostt5Fold2aa.generate',
594
+ httpMethod: 'post',
595
+ httpPath: '/api/v3/prostt5-fold2aa/generate/',
596
+ },
597
+ {
598
+ clientCallName: 'client.v3.proteinMpnn.generate',
599
+ fullyQualifiedName: 'v3.proteinMpnn.generate',
600
+ httpMethod: 'post',
601
+ httpPath: '/api/v3/protein-mpnn/generate/',
602
+ },
603
+ {
604
+ clientCallName: 'client.v3.sadieAntibody.predict',
605
+ fullyQualifiedName: 'v3.sadieAntibody.predict',
606
+ httpMethod: 'post',
607
+ httpPath: '/api/v3/sadie-antibody/predict/',
608
+ },
609
+ {
610
+ clientCallName: 'client.v3.solubleMpnn.generate',
611
+ fullyQualifiedName: 'v3.solubleMpnn.generate',
612
+ httpMethod: 'post',
613
+ httpPath: '/api/v3/soluble-mpnn/generate/',
614
+ },
615
+ {
616
+ clientCallName: 'client.v3.soluprot.predict',
617
+ fullyQualifiedName: 'v3.soluprot.predict',
618
+ httpMethod: 'post',
619
+ httpPath: '/api/v3/soluprot/predict/',
620
+ },
621
+ {
622
+ clientCallName: 'client.v3.spurs.predict',
623
+ fullyQualifiedName: 'v3.spurs.predict',
624
+ httpMethod: 'post',
625
+ httpPath: '/api/v3/spurs/predict/',
626
+ },
627
+ {
628
+ clientCallName: 'client.v3.tcrbuilder2Plus.predict',
629
+ fullyQualifiedName: 'v3.tcrbuilder2Plus.predict',
630
+ httpMethod: 'post',
631
+ httpPath: '/api/v3/tcrbuilder2-plus/predict/',
632
+ },
633
+ {
634
+ clientCallName: 'client.v3.tcrbuilder2.predict',
635
+ fullyQualifiedName: 'v3.tcrbuilder2.predict',
636
+ httpMethod: 'post',
637
+ httpPath: '/api/v3/tcrbuilder2/predict/',
638
+ },
639
+ {
640
+ clientCallName: 'client.v3.tembertureClassifier.encode',
641
+ fullyQualifiedName: 'v3.tembertureClassifier.encode',
642
+ httpMethod: 'post',
643
+ httpPath: '/api/v3/temberture-classifier/encode/',
644
+ },
645
+ {
646
+ clientCallName: 'client.v3.tembertureClassifier.predict',
647
+ fullyQualifiedName: 'v3.tembertureClassifier.predict',
648
+ httpMethod: 'post',
649
+ httpPath: '/api/v3/temberture-classifier/predict/',
650
+ },
651
+ {
652
+ clientCallName: 'client.v3.tembertureRegression.encode',
653
+ fullyQualifiedName: 'v3.tembertureRegression.encode',
654
+ httpMethod: 'post',
655
+ httpPath: '/api/v3/temberture-regression/encode/',
656
+ },
657
+ {
658
+ clientCallName: 'client.v3.tembertureRegression.predict',
659
+ fullyQualifiedName: 'v3.tembertureRegression.predict',
660
+ httpMethod: 'post',
661
+ httpPath: '/api/v3/temberture-regression/predict/',
662
+ },
663
+ {
664
+ clientCallName: 'client.v3.tempro3b.predict',
665
+ fullyQualifiedName: 'v3.tempro3b.predict',
666
+ httpMethod: 'post',
667
+ httpPath: '/api/v3/tempro-3b/predict/',
668
+ },
669
+ {
670
+ clientCallName: 'client.v3.tempro650m.predict',
671
+ fullyQualifiedName: 'v3.tempro650m.predict',
672
+ httpMethod: 'post',
673
+ httpPath: '/api/v3/tempro-650m/predict/',
674
+ },
675
+ {
676
+ clientCallName: 'client.v3.thermompnnD.predict',
677
+ fullyQualifiedName: 'v3.thermompnnD.predict',
678
+ httpMethod: 'post',
679
+ httpPath: '/api/v3/thermompnn-d/predict/',
680
+ },
681
+ {
682
+ clientCallName: 'client.v3.thermompnn.predict',
683
+ fullyQualifiedName: 'v3.thermompnn.predict',
684
+ httpMethod: 'post',
685
+ httpPath: '/api/v3/thermompnn/predict/',
686
+ },
687
+ {
688
+ clientCallName: 'client.v3.zymctrl.encode',
689
+ fullyQualifiedName: 'v3.zymctrl.encode',
690
+ httpMethod: 'post',
691
+ httpPath: '/api/v3/zymctrl/encode/',
692
+ },
693
+ {
694
+ clientCallName: 'client.v3.zymctrl.generate',
695
+ fullyQualifiedName: 'v3.zymctrl.generate',
696
+ httpMethod: 'post',
697
+ httpPath: '/api/v3/zymctrl/generate/',
698
+ },
699
+ ];
700
+ function allowedMethodsForCodeTool(options) {
701
+ if (!options) {
702
+ return undefined;
703
+ }
704
+ let allowedMethods;
705
+ if (options.codeAllowHttpGets || options.codeAllowedMethods) {
706
+ // Start with nothing allowed and then add into it from options
707
+ let allowedMethodsSet = new Set();
708
+ if (options.codeAllowHttpGets) {
709
+ // Add all methods that map to an HTTP GET
710
+ sdkMethods
711
+ .filter((method) => method.httpMethod === 'get')
712
+ .forEach((method) => allowedMethodsSet.add(method));
713
+ }
714
+ if (options.codeAllowedMethods) {
715
+ // Add all methods that match any of the allowed regexps
716
+ const allowedRegexps = options.codeAllowedMethods.map((pattern) => {
717
+ try {
718
+ return new RegExp(pattern);
719
+ }
720
+ catch (e) {
721
+ throw new Error(`Invalid regex pattern for allowed method: "${pattern}": ${e instanceof Error ? e.message : e}`);
722
+ }
723
+ });
724
+ sdkMethods
725
+ .filter((method) => allowedRegexps.some((regexp) => regexp.test(method.fullyQualifiedName)))
726
+ .forEach((method) => allowedMethodsSet.add(method));
727
+ }
728
+ allowedMethods = Array.from(allowedMethodsSet);
729
+ }
730
+ else {
731
+ // Start with everything allowed
732
+ allowedMethods = [...sdkMethods];
733
+ }
734
+ if (options.codeBlockedMethods) {
735
+ // Filter down based on blocked regexps
736
+ const blockedRegexps = options.codeBlockedMethods.map((pattern) => {
737
+ try {
738
+ return new RegExp(pattern);
739
+ }
740
+ catch (e) {
741
+ throw new Error(`Invalid regex pattern for blocked method: "${pattern}": ${e instanceof Error ? e.message : e}`);
742
+ }
743
+ });
744
+ allowedMethods = allowedMethods.filter((method) => !blockedRegexps.some((regexp) => regexp.test(method.fullyQualifiedName)));
745
+ }
746
+ return allowedMethods;
747
+ }
748
+ export function blockedMethodsForCodeTool(options) {
749
+ const allowedMethods = allowedMethodsForCodeTool(options);
750
+ if (!allowedMethods) {
751
+ return undefined;
752
+ }
753
+ const allowedSet = new Set(allowedMethods.map((method) => method.fullyQualifiedName));
754
+ // Return any methods that are not explicitly allowed
755
+ return sdkMethods.filter((method) => !allowedSet.has(method.fullyQualifiedName));
756
+ }
757
+ //# sourceMappingURL=methods.mjs.map