@bgicli/bgicli 2.3.6 → 2.3.8

package/dist/bgi.js

@@ -13855,7 +13855,7 @@ var TOOL_DEFINITIONS = [
           },
           timeout_ms: {
             type: "number",
-            description: "Timeout in milliseconds (default 300000 / 5 min, max 1800000 / 30 min for long jobs like STAR alignment)"
+            description: "Timeout in milliseconds (default 300000 / 5 min). For downloads (wget/curl/aria2c) or long computations (STAR, HISAT2, etc.) ALWAYS use at least 3600000 (60 min). Never set a short timeout for downloads \u2014 slow networks are normal, be patient."
           }
         },
         required: ["command"]
@@ -13959,13 +13959,15 @@ var TOOL_DEFINITIONS = [
 async function executeTool(name, args, onStream) {
   try {
     switch (name) {
-      case "bash":
-        return await toolBash(
-          args["command"],
-          args["workdir"],
-          args["timeout_ms"] ?? 3e5,
-          onStream
-        );
+      case "bash": {
+        const cmd = args["command"];
+        const requestedTimeout = args["timeout_ms"] ?? 3e5;
+        const isDownload = /\b(wget|curl|aria2c|axel|rsync)\b/.test(cmd);
+        if (isDownload) {
+          return await toolBash(cmd, args["workdir"], 0, onStream, 6e5);
+        }
+        return await toolBash(cmd, args["workdir"], requestedTimeout, onStream);
+      }
       case "read_file":
         return toolReadFile(
           args["path"],
@@ -14015,7 +14017,7 @@ function injectProgressFlags(cmd) {
   }
   return cmd;
 }
-async function toolBash(command, workdir, timeoutMs = 3e5, onStream) {
+async function toolBash(command, workdir, timeoutMs = 3e5, onStream, inactivityMs) {
   const scan = scanCommand(command);
   const criticals = scan.matches.filter((m2) => m2.pattern.level === "CRITICAL");
   if (criticals.length > 0) {
@@ -14064,15 +14066,31 @@ async function toolBash(command, workdir, timeoutMs = 3e5, onStream) {
       }
     });
     let timedOut = false;
-    const timer = setTimeout(() => {
+    let timedOutSecs = 0;
+    const effectiveMs = inactivityMs ?? timeoutMs;
+    let timer = setTimeout(() => {
       timedOut = true;
+      timedOutSecs = effectiveMs / 1e3;
       child.kill();
-    }, timeoutMs);
+    }, effectiveMs);
+    const resetTimer = inactivityMs ? () => {
+      clearTimeout(timer);
+      timer = setTimeout(() => {
+        timedOut = true;
+        timedOutSecs = inactivityMs / 1e3;
+        child.kill();
+      }, inactivityMs);
+    } : null;
+    if (resetTimer) {
+      child.stdout?.on("data", resetTimer);
+      child.stderr?.on("data", resetTimer);
+    }
     child.on("close", (code) => {
       clearTimeout(timer);
       const out = (decodeBuffer(Buffer.concat(outChunks)) + "\n" + decodeBuffer(Buffer.concat(errChunks))).trim();
       if (timedOut) {
-        resolve4({ output: out, error: `Command timed out after ${timeoutMs / 1e3}s` });
+        const msg = inactivityMs ? `\u4E0B\u8F7D\u505C\u6EDE \u2014 \u8D85\u8FC7 ${timedOutSecs}s \u65E0\u4EFB\u4F55\u8F93\u51FA\uFF08\u8FDE\u63A5\u53EF\u80FD\u5DF2\u65AD\u5F00\uFF09` : `Command timed out after ${timedOutSecs}s`;
+        resolve4({ output: out, error: msg });
       } else if (code !== 0) {
         resolve4({ output: out, error: `Command failed (exit ${code})` });
       } else {
@@ -15961,7 +15979,7 @@ function clearCheckpoints(sessionId) {
 
 // src/index.ts
 var import_fs7 = require("fs");
-var VERSION2 = "2.3.6";
+var VERSION2 = "2.3.8";
 var SKILLHUB_HUBS = {
   bgi: { label: "BGI\u5185\u7F51", apiBase: "https://clawhub.ai", backend: "clawhub" },
   clawhub: { label: "clawhub.ai", apiBase: "https://clawhub.ai", backend: "clawhub" },

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@bgicli/bgicli",
-  "version": "2.3.6",
+  "version": "2.3.8",
   "description": "BGI CLI — Bioinformatics AI terminal for Chinese researchers (百炼/DeepSeek/Kimi/Qwen)",
   "bin": {
     "bgi": "dist/bgi.js"