@bgicli/bgicli 2.2.7 → 2.2.9

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (117) hide show
  1. package/data/skills/anthropic-algorithmic-art/SKILL.md +405 -0
  2. package/data/skills/anthropic-canvas-design/SKILL.md +130 -0
  3. package/data/skills/anthropic-claude-api/SKILL.md +243 -0
  4. package/data/skills/anthropic-doc-coauthoring/SKILL.md +375 -0
  5. package/data/skills/anthropic-docx/SKILL.md +590 -0
  6. package/data/skills/anthropic-frontend-design/SKILL.md +42 -0
  7. package/data/skills/anthropic-internal-comms/SKILL.md +32 -0
  8. package/data/skills/anthropic-mcp-builder/SKILL.md +236 -0
  9. package/data/skills/anthropic-pdf/SKILL.md +314 -0
  10. package/data/skills/anthropic-pptx/SKILL.md +232 -0
  11. package/data/skills/anthropic-skill-creator/SKILL.md +485 -0
  12. package/data/skills/anthropic-webapp-testing/SKILL.md +96 -0
  13. package/data/skills/anthropic-xlsx/SKILL.md +292 -0
  14. package/data/skills/arxiv-database/SKILL.md +362 -0
  15. package/data/skills/astropy/SKILL.md +329 -0
  16. package/data/skills/ctx-advanced-evaluation/SKILL.md +402 -0
  17. package/data/skills/ctx-bdi-mental-states/SKILL.md +311 -0
  18. package/data/skills/ctx-context-compression/SKILL.md +272 -0
  19. package/data/skills/ctx-context-degradation/SKILL.md +206 -0
  20. package/data/skills/ctx-context-fundamentals/SKILL.md +201 -0
  21. package/data/skills/ctx-context-optimization/SKILL.md +195 -0
  22. package/data/skills/ctx-evaluation/SKILL.md +251 -0
  23. package/data/skills/ctx-filesystem-context/SKILL.md +287 -0
  24. package/data/skills/ctx-hosted-agents/SKILL.md +260 -0
  25. package/data/skills/ctx-memory-systems/SKILL.md +225 -0
  26. package/data/skills/ctx-multi-agent-patterns/SKILL.md +257 -0
  27. package/data/skills/ctx-project-development/SKILL.md +291 -0
  28. package/data/skills/ctx-tool-design/SKILL.md +271 -0
  29. package/data/skills/dhdna-profiler/SKILL.md +162 -0
  30. package/data/skills/generate-image/SKILL.md +183 -0
  31. package/data/skills/geomaster/SKILL.md +365 -0
  32. package/data/skills/get-available-resources/SKILL.md +275 -0
  33. package/data/skills/hamelsmu-build-review-interface/SKILL.md +96 -0
  34. package/data/skills/hamelsmu-error-analysis/SKILL.md +164 -0
  35. package/data/skills/hamelsmu-eval-audit/SKILL.md +183 -0
  36. package/data/skills/hamelsmu-evaluate-rag/SKILL.md +177 -0
  37. package/data/skills/hamelsmu-generate-synthetic-data/SKILL.md +131 -0
  38. package/data/skills/hamelsmu-validate-evaluator/SKILL.md +212 -0
  39. package/data/skills/hamelsmu-write-judge-prompt/SKILL.md +144 -0
  40. package/data/skills/hf-cli/SKILL.md +174 -0
  41. package/data/skills/hf-mcp/SKILL.md +178 -0
  42. package/data/skills/hugging-face-dataset-viewer/SKILL.md +121 -0
  43. package/data/skills/hugging-face-datasets/SKILL.md +542 -0
  44. package/data/skills/hugging-face-evaluation/SKILL.md +651 -0
  45. package/data/skills/hugging-face-jobs/SKILL.md +1042 -0
  46. package/data/skills/hugging-face-model-trainer/SKILL.md +717 -0
  47. package/data/skills/hugging-face-paper-pages/SKILL.md +239 -0
  48. package/data/skills/hugging-face-paper-publisher/SKILL.md +624 -0
  49. package/data/skills/hugging-face-tool-builder/SKILL.md +110 -0
  50. package/data/skills/hugging-face-trackio/SKILL.md +115 -0
  51. package/data/skills/hugging-face-vision-trainer/SKILL.md +593 -0
  52. package/data/skills/huggingface-gradio/SKILL.md +245 -0
  53. package/data/skills/matlab/SKILL.md +376 -0
  54. package/data/skills/modal/SKILL.md +381 -0
  55. package/data/skills/openai-cloudflare-deploy/SKILL.md +224 -0
  56. package/data/skills/openai-develop-web-game/SKILL.md +149 -0
  57. package/data/skills/openai-doc/SKILL.md +80 -0
  58. package/data/skills/openai-figma/SKILL.md +42 -0
  59. package/data/skills/openai-figma-implement-design/SKILL.md +264 -0
  60. package/data/skills/openai-gh-address-comments/SKILL.md +25 -0
  61. package/data/skills/openai-gh-fix-ci/SKILL.md +69 -0
  62. package/data/skills/openai-imagegen/SKILL.md +174 -0
  63. package/data/skills/openai-jupyter-notebook/SKILL.md +107 -0
  64. package/data/skills/openai-linear/SKILL.md +87 -0
  65. package/data/skills/openai-netlify-deploy/SKILL.md +247 -0
  66. package/data/skills/openai-notion-knowledge-capture/SKILL.md +56 -0
  67. package/data/skills/openai-notion-meeting-intelligence/SKILL.md +60 -0
  68. package/data/skills/openai-notion-research-documentation/SKILL.md +59 -0
  69. package/data/skills/openai-notion-spec-to-implementation/SKILL.md +58 -0
  70. package/data/skills/openai-openai-docs/SKILL.md +69 -0
  71. package/data/skills/openai-pdf/SKILL.md +67 -0
  72. package/data/skills/openai-playwright/SKILL.md +147 -0
  73. package/data/skills/openai-render-deploy/SKILL.md +479 -0
  74. package/data/skills/openai-screenshot/SKILL.md +267 -0
  75. package/data/skills/openai-security-best-practices/SKILL.md +86 -0
  76. package/data/skills/openai-security-ownership-map/SKILL.md +206 -0
  77. package/data/skills/openai-security-threat-model/SKILL.md +81 -0
  78. package/data/skills/openai-sentry/SKILL.md +123 -0
  79. package/data/skills/openai-sora/SKILL.md +178 -0
  80. package/data/skills/openai-speech/SKILL.md +144 -0
  81. package/data/skills/openai-spreadsheet/SKILL.md +145 -0
  82. package/data/skills/openai-transcribe/SKILL.md +81 -0
  83. package/data/skills/openai-vercel-deploy/SKILL.md +77 -0
  84. package/data/skills/openai-yeet/SKILL.md +28 -0
  85. package/data/skills/pennylane/SKILL.md +224 -0
  86. package/data/skills/polars-bio/SKILL.md +374 -0
  87. package/data/skills/primekg/SKILL.md +97 -0
  88. package/data/skills/pymatgen/SKILL.md +689 -0
  89. package/data/skills/qiskit/SKILL.md +273 -0
  90. package/data/skills/qutip/SKILL.md +316 -0
  91. package/data/skills/recursive-decomposition/SKILL.md +185 -0
  92. package/data/skills/rowan/SKILL.md +427 -0
  93. package/data/skills/scholar-evaluation/SKILL.md +298 -0
  94. package/data/skills/sentry-create-alert/SKILL.md +210 -0
  95. package/data/skills/sentry-fix-issues/SKILL.md +126 -0
  96. package/data/skills/sentry-pr-code-review/SKILL.md +105 -0
  97. package/data/skills/sentry-python-sdk/SKILL.md +317 -0
  98. package/data/skills/sentry-setup-ai-monitoring/SKILL.md +217 -0
  99. package/data/skills/stable-baselines3/SKILL.md +297 -0
  100. package/data/skills/sympy/SKILL.md +498 -0
  101. package/data/skills/trailofbits-ask-questions-if-underspecified/SKILL.md +85 -0
  102. package/data/skills/trailofbits-audit-context-building/SKILL.md +302 -0
  103. package/data/skills/trailofbits-differential-review/SKILL.md +220 -0
  104. package/data/skills/trailofbits-insecure-defaults/SKILL.md +117 -0
  105. package/data/skills/trailofbits-modern-python/SKILL.md +333 -0
  106. package/data/skills/trailofbits-property-based-testing/SKILL.md +123 -0
  107. package/data/skills/trailofbits-semgrep-rule-creator/SKILL.md +172 -0
  108. package/data/skills/trailofbits-sharp-edges/SKILL.md +292 -0
  109. package/data/skills/trailofbits-variant-analysis/SKILL.md +142 -0
  110. package/data/skills/transformers.js/SKILL.md +637 -0
  111. package/data/skills/writing/SKILL.md +419 -0
  112. package/data/workflows/survival-analysis-clinical/SKILL.md +348 -0
  113. package/data/workflows/survival-analysis-clinical/scripts/full_workflow.R +95 -0
  114. package/data/workflows/survival-analysis-clinical/scripts/load_example_data.R +65 -0
  115. package/data/workflows/survival-analysis-clinical/scripts/plot_forest.R +46 -0
  116. package/dist/bgi.js +1608 -233
  117. package/package.json +45 -45
package/package.json CHANGED
@@ -1,45 +1,45 @@
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- {
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- "name": "@bgicli/bgicli",
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- "version": "2.2.7",
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- "description": "BGI CLI — Bioinformatics AI terminal for Chinese researchers (百炼/DeepSeek/Kimi/Qwen)",
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- "bin": {
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- "bgi": "dist/bgi.js"
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- },
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- "files": [
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- "dist/bgi.js",
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- "data/",
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- "README.md"
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- ],
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- "publishConfig": {
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- "access": "public"
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- },
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- "scripts": {
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- "build": "node build.mjs",
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- "dev": "tsx src/index.ts",
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- "start": "node dist/bgi.js"
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- },
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- "dependencies": {
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- "chalk": "^5.3.0",
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- "openai": "^4.77.0"
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- },
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- "devDependencies": {
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- "@types/node": "^22.0.0",
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- "esbuild": "^0.24.0",
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- "tsx": "^4.19.0",
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- "typescript": "^5.7.0"
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- },
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- "engines": {
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- "node": ">=18.0.0"
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- },
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- "keywords": [
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- "bioinformatics",
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- "AI",
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- "CLI",
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- "rnaseq",
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- "scrnaseq",
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- "genomics",
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- "生信",
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- "大模型"
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- ],
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- "license": "MIT"
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- }
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+ {
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+ "name": "@bgicli/bgicli",
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+ "version": "2.2.9",
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+ "description": "BGI CLI — Bioinformatics AI terminal for Chinese researchers (百炼/DeepSeek/Kimi/Qwen)",
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+ "bin": {
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+ "bgi": "dist/bgi.js"
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+ },
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+ "files": [
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+ "dist/bgi.js",
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+ "data/",
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+ "README.md"
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+ ],
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+ "publishConfig": {
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+ "access": "public"
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+ },
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+ "scripts": {
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+ "build": "node build.mjs",
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+ "dev": "tsx src/index.ts",
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+ "start": "node dist/bgi.js"
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+ },
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+ "dependencies": {
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+ "chalk": "^5.3.0",
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+ "openai": "^4.77.0"
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+ },
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+ "devDependencies": {
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+ "@types/node": "^22.0.0",
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+ "esbuild": "^0.24.0",
28
+ "tsx": "^4.19.0",
29
+ "typescript": "^5.7.0"
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+ },
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+ "engines": {
32
+ "node": ">=18.0.0"
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+ },
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+ "keywords": [
35
+ "bioinformatics",
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+ "AI",
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+ "CLI",
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+ "rnaseq",
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+ "scrnaseq",
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+ "genomics",
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+ "生信",
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+ "大模型"
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+ ],
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+ "license": "MIT"
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+ }