@behavior-os/cli 0.0.0-stage → 2.2.0

package/dist/agents.d.ts

@@ -0,0 +1,37 @@
+import type { Agent } from '@behavior-os/schemas';
+export interface AgentRegistryResult {
+    /** Registry file that was read, or the first default candidate. */
+    path: string;
+    /** Whether the registry file exists. */
+    found: boolean;
+    /** Agents loaded via the facade from the SQLite store. */
+    agents: Agent[];
+    /** Read error, when the file exists but could not be opened. */
+    error: string | null;
+}
+/**
+ * Resolve the agent registry path.
+ *
+ * The documented SDK default is `./behavioros.db`; `.behavioros/behavioros.db`
+ * is also accepted for projects that keep all local state in `.behavioros/`.
+ * An explicit `--db` always wins, even when the file does not exist yet.
+ */
+export declare function resolveAgentRegistryPath(directory: string, explicitPath?: string): {
+    path: string;
+    exists: boolean;
+};
+/**
+ * Read registered agents via the BehaviorOS facade instead of reaching into
+ * `SqliteStore` directly (Finding #11: CLI bypass of facade).
+ *
+ * Creates a BehaviorOS instance configured with the same SQLite path the
+ * plugin/MCP use, lets `hydrateFromStore` populate the in-memory agent map,
+ * then returns `listAgents()`. The store is properly closed afterwards to
+ * avoid file-handle leaks (especially on Windows).
+ *
+ * A missing registry is not an error: a project that never enabled persistence
+ * simply has no agents to list. An existing but unreadable/corrupt database is
+ * reported via the facade's `storeError` status field.
+ */
+export declare function listRegisteredAgents(directory: string, explicitPath?: string): Promise<AgentRegistryResult>;
+//# sourceMappingURL=agents.d.ts.map

package/dist/agents.d.ts.map

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package/dist/agents.js

@@ -0,0 +1,66 @@
+import { existsSync } from 'node:fs';
+import { join } from 'node:path';
+import { BehaviorOS } from '@behavior-os/core';
+/**
+ * Resolve the agent registry path.
+ *
+ * The documented SDK default is `./behavioros.db`; `.behavioros/behavioros.db`
+ * is also accepted for projects that keep all local state in `.behavioros/`.
+ * An explicit `--db` always wins, even when the file does not exist yet.
+ */
+export function resolveAgentRegistryPath(directory, explicitPath) {
+    if (explicitPath)
+        return { path: explicitPath, exists: existsSync(explicitPath) };
+    const candidates = [
+        join(directory, 'behavioros.db'),
+        join(directory, '.behavioros', 'behavioros.db'),
+    ];
+    for (const candidate of candidates) {
+        if (existsSync(candidate))
+            return { path: candidate, exists: true };
+    }
+    return { path: candidates[0], exists: false };
+}
+/**
+ * Read registered agents via the BehaviorOS facade instead of reaching into
+ * `SqliteStore` directly (Finding #11: CLI bypass of facade).
+ *
+ * Creates a BehaviorOS instance configured with the same SQLite path the
+ * plugin/MCP use, lets `hydrateFromStore` populate the in-memory agent map,
+ * then returns `listAgents()`. The store is properly closed afterwards to
+ * avoid file-handle leaks (especially on Windows).
+ *
+ * A missing registry is not an error: a project that never enabled persistence
+ * simply has no agents to list. An existing but unreadable/corrupt database is
+ * reported via the facade's `storeError` status field.
+ */
+export async function listRegisteredAgents(directory, explicitPath) {
+    const resolved = resolveAgentRegistryPath(directory, explicitPath);
+    if (!resolved.exists) {
+        return { path: resolved.path, found: false, agents: [], error: null };
+    }
+    const bos = new BehaviorOS({
+        persistence: { path: resolved.path },
+    });
+    try {
+        const status = bos.getStatus();
+        // If the store failed to initialise (corrupt DB, wrong format), surface
+        // the error instead of silently returning an empty registry.
+        if (status.store === false && status.storeError) {
+            return {
+                path: resolved.path,
+                found: true,
+                agents: [],
+                error: status.storeError,
+            };
+        }
+        // hydrateFromStore runs in the constructor when persistence is set;
+        // listAgents() now reflects what was persisted by any host.
+        return { path: resolved.path, found: true, agents: bos.listAgents(), error: null };
+    }
+    finally {
+        // Ensure the SQLite handle is released promptly (Windows file locking).
+        bos.closeStore();
+    }
+}
+//# sourceMappingURL=agents.js.map

package/dist/agents.js.map

@@ -0,0 +1 @@
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package/dist/cli.d.ts

@@ -0,0 +1,3 @@
+#!/usr/bin/env node
+export {};
+//# sourceMappingURL=cli.d.ts.map

package/dist/cli.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"cli.d.ts","sourceRoot":"","sources":["../src/cli.ts"],"names":[],"mappings":""}

package/dist/cli.js

@@ -0,0 +1,716 @@
+#!/usr/bin/env node
+import { existsSync, mkdirSync, readFileSync, writeFileSync } from 'node:fs';
+import { dirname, join } from 'node:path';
+import { fileURLToPath } from 'node:url';
+import { BehaviorOS, DNALoader } from '@behavior-os/core';
+import chalk from 'chalk';
+import { Command } from 'commander';
+import { listRegisteredAgents } from './agents.js';
+import { runDriftCheck } from './drift.js';
+const __filename = fileURLToPath(import.meta.url);
+const __dirname = dirname(__filename);
+const program = new Command();
+program
+    .name('behavioros')
+    .description('Behavior-OS CLI - Governance platform for AI agent teams')
+    .version('2.0.0');
+/**
+ * Best-effort DNA loader shared by the commands that need governance to be
+ * active. Reads `BEHAVIOROS_DNA_PATH` first, then `<dir>/dnas/<pattern>.yaml`.
+ *
+ * Returns the DNA name that was actually loaded, or `null` when nothing was
+ * loaded. Callers must surface `null` instead of assuming governance ran — an
+ * unloaded DNA means every gate is skipped, not passed.
+ */
+async function loadDnaForCommand(bos, dir, pattern) {
+    const candidates = [process.env.BEHAVIOROS_DNA_PATH, join(dir, 'dnas', `${pattern}.yaml`)].filter((candidate) => typeof candidate === 'string' && candidate.length > 0);
+    for (const candidate of candidates) {
+        if (!existsSync(candidate))
+            continue;
+        try {
+            const yaml = await import('js-yaml');
+            const fs = await import('node:fs/promises');
+            const dna = yaml.load(await fs.readFile(candidate, 'utf-8'));
+            await bos.loadDNA(dna);
+            return dna.name;
+        }
+        catch {
+            // Try the next candidate rather than claiming a DNA was loaded.
+        }
+    }
+    return null;
+}
+// INIT command
+program
+    .command('init')
+    .description('Initialize a new Behavior-OS project')
+    .option('-d, --directory <path>', 'Target directory', '.')
+    .option('--dna <pattern>', 'Initial DNA pattern', 'enterprise-governance')
+    .action(async (options) => {
+    const dir = options.directory;
+    // Create directory structure
+    const dirs = ['dnas', 'src', 'tests', '.behavioros'];
+    for (const d of dirs) {
+        mkdirSync(join(dir, d), { recursive: true });
+    }
+    // Create .behavioros/state.json
+    const state = {
+        currentStep: 0,
+        selectedDna: options.dna,
+        activeMission: null,
+        stepHistory: [],
+        createdAt: new Date().toISOString(),
+        updatedAt: new Date().toISOString(),
+    };
+    writeFileSync(join(dir, '.behavioros', 'state.json'), JSON.stringify(state, null, 2));
+    // Create .mcp.json
+    const mcpConfig = {
+        mcpServers: {
+            behavioros: {
+                command: 'node',
+                args: [join(__dirname, '..', '..', 'mcp-server', 'dist', 'server.js')],
+                env: {
+                    BEHAVIOROS_DNA_PATH: join(dir, 'dnas', `${options.dna}.yaml`),
+                },
+            },
+        },
+    };
+    writeFileSync(join(dir, '.mcp.json'), JSON.stringify(mcpConfig, null, 2));
+    // Create sample DNA
+    const sampleDNA = `name: ${options.dna}
+version: "2.0.0"
+description: "Behavior-OS DNA pattern"
+personas:
+  - role: developer
+    name: Default Developer
+    authority: developer
+    skills: [code, test, review]
+governance:
+  - id: default-rule
+    level: medium
+    action: warn
+    conditions:
+      - type: default
+        value: true
+quality:
+  - id: coverage
+    type: test_coverage
+    threshold: 80
+`;
+    writeFileSync(join(dir, 'dnas', `${options.dna}.yaml`), sampleDNA);
+    console.log(chalk.green(`✓ Behavior-OS project initialized in ${dir}`));
+    console.log(chalk.gray(`  DNA pattern: ${options.dna}`));
+    console.log(chalk.gray(`  Config files created:`));
+    console.log(chalk.gray(`    - .behavioros/state.json`));
+    console.log(chalk.gray(`    - .mcp.json`));
+    console.log(chalk.gray(`    - dnas/${options.dna}.yaml`));
+});
+// COMPILE command
+program
+    .command('compile')
+    .description('Parse and validate every DNA pattern in dnas/')
+    .option('-d, --directory <path>', 'Project directory', '.')
+    .action(async (options) => {
+    const dir = options.directory;
+    const dnasDir = join(dir, 'dnas');
+    if (!existsSync(dnasDir)) {
+        console.error(chalk.red('Error: dnas/ directory not found'));
+        process.exit(1);
+    }
+    const fileSystem = await import('node:fs/promises');
+    const files = (await fileSystem.readdir(dnasDir))
+        .filter((file) => file.endsWith('.yaml') || file.endsWith('.yml'))
+        .sort();
+    console.log(chalk.blue(`Compiling ${files.length} DNA pattern(s) from dnas/...`));
+    const loader = new DNALoader();
+    const yaml = await import('js-yaml');
+    let failed = 0;
+    for (const file of files) {
+        try {
+            // Validated against the full DNASchema, not a substring check.
+            loader.load(yaml.load(readFileSync(join(dnasDir, file), 'utf-8')));
+            console.log(chalk.green(`  ✓ ${file}`));
+        }
+        catch (error) {
+            failed += 1;
+            console.log(chalk.red(`  ✗ ${file} — ${error instanceof Error ? error.message : error}`));
+        }
+    }
+    if (failed > 0) {
+        console.log(chalk.red(`\n✗ ${failed} of ${files.length} pattern(s) failed validation.`));
+        process.exit(1);
+    }
+    console.log(chalk.green(`\n✓ ${files.length} pattern(s) compiled and validated.`));
+});
+// VALIDATE command
+program
+    .command('validate')
+    .description('Validate the project layout and every DNA pattern in dnas/')
+    .option('-d, --directory <path>', 'Project directory', '.')
+    .action(async (options) => {
+    const dir = options.directory;
+    console.log(chalk.blue('Validating Behavior-OS project...'));
+    // Check for required files
+    const checks = [
+        { file: '.behavioros/state.json', required: true },
+        { file: '.mcp.json', required: false },
+        { file: 'dnas', required: true },
+    ];
+    let allPassed = true;
+    for (const check of checks) {
+        const exists = existsSync(join(dir, check.file));
+        if (exists) {
+            console.log(chalk.green(`  ✓ ${check.file}`));
+        }
+        else if (check.required) {
+            console.log(chalk.red(`  ✗ ${check.file} - missing`));
+            allPassed = false;
+        }
+        else {
+            console.log(chalk.gray(`  ○ ${check.file} - optional, not present`));
+        }
+    }
+    // Validate every DNA pattern against the schema (the engine's own loader).
+    const dnasDir = join(dir, 'dnas');
+    if (existsSync(dnasDir)) {
+        const fileSystem = await import('node:fs/promises');
+        const files = (await fileSystem.readdir(dnasDir))
+            .filter((file) => file.endsWith('.yaml') || file.endsWith('.yml'))
+            .sort();
+        const loader = new DNALoader();
+        const yaml = await import('js-yaml');
+        let invalid = 0;
+        for (const file of files) {
+            try {
+                loader.load(yaml.load(readFileSync(join(dnasDir, file), 'utf-8')));
+            }
+            catch (error) {
+                invalid += 1;
+                console.log(chalk.red(`  ✗ dnas/${file} — ${error instanceof Error ? error.message : error}`));
+            }
+        }
+        if (invalid > 0) {
+            allPassed = false;
+        }
+        else {
+            console.log(chalk.green(`  ✓ dnas/ — ${files.length} pattern(s) valid`));
+        }
+    }
+    if (allPassed) {
+        console.log(chalk.green('\n✓ Validation passed!'));
+    }
+    else {
+        console.log(chalk.red('\n✗ Validation failed. Please fix the issues above.'));
+        process.exit(1);
+    }
+});
+// STATUS command
+program
+    .command('status')
+    .description('Show engine status plus the local .behavioros/state.json')
+    .option('-d, --directory <path>', 'Project directory', '.')
+    .option('--dna <pattern>', 'DNA pattern to load', 'enterprise-governance')
+    .action(async (options) => {
+    const dir = options.directory;
+    const bos = new BehaviorOS();
+    const loaded = await loadDnaForCommand(bos, dir, options.dna);
+    const status = bos.getStatus();
+    console.log(chalk.blue('Behavior-OS Status'));
+    console.log(chalk.gray('='.repeat(40)));
+    console.log(`  DNA loaded:  ${loaded ?? 'none'}`);
+    console.log(`  Governance:  ${status.config.governance}`);
+    console.log(`  Missions:    ${status.missions}`);
+    console.log(`  Agents:      ${status.agents}`);
+    // Load state
+    let state = null;
+    const statePath = join(dir, '.behavioros', 'state.json');
+    if (existsSync(statePath)) {
+        state = JSON.parse(readFileSync(statePath, 'utf-8'));
+    }
+    if (state) {
+        console.log(chalk.cyan(`  State file:  .behavioros/state.json (updated ${state.updatedAt})`));
+        console.log(chalk.cyan(`  DNA Pattern: ${state.selectedDna || 'Not selected'}`));
+        console.log(chalk.cyan(`  Current Step: ${state.currentStep}/7`));
+        console.log(chalk.cyan(`  Active Mission: ${state.activeMission || 'None'}`));
+    }
+    else {
+        console.log(chalk.yellow('  No .behavioros/state.json (create one with: behavioros init).'));
+    }
+    // Check MCP config
+    const mcpPath = join(dir, '.mcp.json');
+    if (existsSync(mcpPath)) {
+        console.log(chalk.green('  ✓ .mcp.json present (this command does not start the server)'));
+    }
+    else {
+        console.log(chalk.gray('  ○ .mcp.json not found'));
+    }
+});
+// DIFF command
+program
+    .command('diff')
+    .description('Compare dnas/*.yaml with .behavioros/baseline.json')
+    .option('-d, --directory <path>', 'Project directory', '.')
+    .action(async (options) => {
+    const dir = options.directory;
+    const dnasDir = join(dir, 'dnas');
+    const baselinePath = join(dir, '.behavioros', 'baseline.json');
+    console.log(chalk.blue('Checking for behavioral drift...'));
+    if (!existsSync(dnasDir)) {
+        console.log(chalk.yellow('  No dnas/ directory found.'));
+        return;
+    }
+    // Load current DNA files
+    const yaml = await import('js-yaml');
+    const fs = await import('node:fs/promises');
+    const currentDNAs = {};
+    try {
+        const files = await fs.readdir(dnasDir);
+        for (const file of files) {
+            if (file.endsWith('.yaml') || file.endsWith('.yml')) {
+                const content = await fs.readFile(join(dnasDir, file), 'utf-8');
+                const name = file.replace(/\.(yaml|yml)$/, '');
+                currentDNAs[name] = yaml.load(content);
+            }
+        }
+    }
+    catch {
+        console.log(chalk.yellow('  Could not read dnas/ directory.'));
+        return;
+    }
+    // Load baseline
+    let baseline = {};
+    if (existsSync(baselinePath)) {
+        try {
+            baseline = JSON.parse(readFileSync(baselinePath, 'utf-8'));
+        }
+        catch {
+            console.log(chalk.yellow('  Invalid baseline file, skipping comparison.'));
+            return;
+        }
+    }
+    if (Object.keys(baseline).length === 0) {
+        console.log(chalk.green('  No baseline found. Current DNA state will be used as baseline.'));
+        await fs.writeFile(baselinePath, JSON.stringify(currentDNAs, null, 2));
+        return;
+    }
+    let driftDetected = false;
+    for (const [name, current] of Object.entries(currentDNAs)) {
+        const base = baseline[name];
+        if (!base) {
+            console.log(chalk.red(`  ✗ New DNA pattern detected: ${name}`));
+            driftDetected = true;
+            continue;
+        }
+        const currentStr = JSON.stringify(current);
+        const baseStr = JSON.stringify(base);
+        if (currentStr !== baseStr) {
+            console.log(chalk.yellow(`  ⚠ Drift detected in ${name}`));
+            driftDetected = true;
+        }
+    }
+    if (!driftDetected) {
+        console.log(chalk.green('  No drift detected. All DNA patterns match baseline.'));
+    }
+});
+// SIMULATE command
+program
+    .command('simulate')
+    .description('Evaluate one action against the loaded DNA rules')
+    .option('-d, --directory <path>', 'Project directory', '.')
+    .option('--action <action>', 'Action to simulate', 'deploy')
+    .option('--agent <agent>', 'Agent ID', 'test-agent')
+    .option('--dna <pattern>', 'DNA pattern to load', 'enterprise-governance')
+    .action(async (options) => {
+    const bos = new BehaviorOS();
+    const loaded = await loadDnaForCommand(bos, options.directory, options.dna);
+    console.log(chalk.blue(`Simulating: ${options.action}`));
+    console.log(chalk.gray(`Agent: ${options.agent}`));
+    if (!loaded) {
+        console.log(chalk.yellow(`  ⚠ No DNA loaded (looked for dnas/${options.dna}.yaml)`));
+        console.log(chalk.yellow('    Without a DNA there are no rules to evaluate.'));
+        return;
+    }
+    const decision = bos.evaluateGovernance(options.action, {
+        agent: options.agent,
+        context: { action: options.action },
+    });
+    console.log(chalk.gray(`DNA: ${loaded}`));
+    console.log(chalk.green(`Verdict: ${decision.verdict}`));
+    console.log(chalk.gray(`Reason: ${decision.reason}`));
+});
+// DEPLOY command
+program
+    .command('deploy')
+    .description('Print the deployment gate plan (does not execute the gates)')
+    .option('-d, --directory <path>', 'Project directory', '.')
+    .option('--mission-id <id>', 'Mission ID to deploy')
+    .option('--dna <pattern>', 'DNA pattern to load', 'enterprise-governance')
+    .action(async (options) => {
+    const bos = new BehaviorOS();
+    const loaded = await loadDnaForCommand(bos, options.directory, options.dna);
+    console.log(chalk.blue('Deployment gate plan'));
+    console.log(chalk.gray('This command prints the plan; it does not run quality gates.'));
+    if (options.missionId)
+        console.log(chalk.gray(`  Mission: ${options.missionId}`));
+    if (!loaded) {
+        console.log(chalk.yellow(`  ⚠ No DNA loaded (looked for dnas/${options.dna}.yaml)`));
+        console.log(chalk.gray('    Quality gates are declared by the DNA: pass --dna or set BEHAVIOROS_DNA_PATH.'));
+    }
+    else {
+        console.log(chalk.gray(`  DNA: ${loaded}`));
+    }
+    const gates = bos.getPipelineEngine().getGates();
+    if (gates.length === 0) {
+        console.log(chalk.gray('  (pipeline disabled or DNA declares no quality gates)'));
+    }
+    else {
+        for (const gate of gates) {
+            console.log(`  ${gate.phase.padEnd(4)} ${gate.id}${gate.blocking ? '' : ' (non-blocking)'}`);
+        }
+    }
+    // The `governance` pre gate is the one gate that can run here for real: it
+    // evaluates the `deploy` action against the loaded DNA and vetoes on `deny`.
+    const identity = bos.resolveAgentIdentity();
+    const preflight = bos.preflightAction('deploy', { agent: identity.agentId });
+    if (preflight.allowed) {
+        console.log(chalk.green(`\n  Pre-flight (governance): allowed — agent ${identity.agentId}`));
+    }
+    else {
+        console.log(chalk.red(`\n  Pre-flight (governance): blocked by ${preflight.blockedBy ?? 'a gate'}`));
+        process.exitCode = 1;
+    }
+    console.log(chalk.gray('\n  Run the real checks with: pnpm lint:check && pnpm typecheck && pnpm test'));
+});
+// ECOSYSTEM command
+program
+    .command('ecosystem')
+    .description('Report what can be read from the project on disk')
+    .option('-d, --directory <path>', 'Project directory', '.')
+    .action(async (options) => {
+    const dir = options.directory;
+    const dnasDir = join(dir, 'dnas');
+    let dnaNames = [];
+    if (existsSync(dnasDir)) {
+        try {
+            const files = await import('node:fs/promises');
+            const entries = await files.readdir(dnasDir);
+            dnaNames = entries
+                .filter((f) => f.endsWith('.yaml') || f.endsWith('.yml'))
+                .map((f) => f.replace(/\.(yaml|yml)$/, ''))
+                .sort();
+        }
+        catch {
+            // directory may not exist
+        }
+    }
+    console.log(chalk.blue('Behavior-OS ecosystem'));
+    console.log(chalk.gray('='.repeat(40)));
+    console.log(`  DNA patterns:  ${dnaNames.length}`);
+    for (const name of dnaNames)
+        console.log(chalk.gray(`    - ${name}`));
+    console.log('  Verdicts:      allow | deny | escalate | transform');
+    console.log(chalk.gray('  Gate plan:     behavioros deploy --dna <pattern>'));
+    console.log(chalk.gray('  Engine/tool inventory: docs/CLAIMS.md'));
+});
+// AGENT command
+program
+    .command('agent')
+    .description('Show the local state summary and agents from the SQLite registry')
+    .option('-d, --directory <path>', 'Project directory', '.')
+    .option('--db <path>', 'Agent registry SQLite path (default: <dir>/behavioros.db or <dir>/.behavioros/behavioros.db)')
+    .action(async (options) => {
+    const dir = options.directory;
+    const statePath = join(dir, '.behavioros', 'state.json');
+    console.log(chalk.blue('Behavior-OS Agents'));
+    console.log(chalk.gray('='.repeat(40)));
+    if (existsSync(statePath)) {
+        try {
+            const state = JSON.parse(readFileSync(statePath, 'utf-8'));
+            console.log(chalk.cyan(`  DNA Pattern: ${state.selectedDna || 'Not selected'}`));
+            console.log(chalk.cyan(`  Active Mission: ${state.activeMission || 'None'}`));
+            console.log(chalk.cyan(`  Current Step: ${state.currentStep}/7`));
+            if (state.stepHistory?.length) {
+                console.log(chalk.gray(`  Steps completed: ${state.stepHistory.length}`));
+            }
+        }
+        catch {
+            console.log(chalk.yellow('  Invalid state file.'));
+        }
+    }
+    else {
+        console.log(chalk.yellow('  No .behavioros/state.json found (create one with: behavioros init).'));
+    }
+    const registry = await listRegisteredAgents(dir, options.db);
+    console.log(chalk.cyan(`\n  Agent registry: ${registry.path}`));
+    if (!registry.found) {
+        console.log(chalk.yellow('  No agent registry found.'));
+        console.log(chalk.gray('  Register agents with the SDK and persistence enabled:'));
+        console.log(chalk.gray("    const bos = new BehaviorOS({ persistence: { path: 'behavioros.db' } });"));
+        console.log(chalk.gray("    bos.registerAgent({ id: 'agent-1', name: 'DevBot', type: 'developer', ... });"));
+        return;
+    }
+    if (registry.error) {
+        console.log(chalk.red(`  Could not read the registry: ${registry.error}`));
+        process.exitCode = 1;
+        return;
+    }
+    if (registry.agents.length === 0) {
+        console.log(chalk.yellow('  Registry is empty.'));
+        return;
+    }
+    console.log(chalk.green(`  ${registry.agents.length} registered agent(s):`));
+    for (const agent of registry.agents) {
+        console.log(chalk.gray(`    ${agent.id}  ${agent.name}  [${agent.type}/${agent.status}]  DNA=${agent.dnaPattern}  mission=${agent.currentMission ?? 'none'}`));
+    }
+});
+// AUTONOMOUS command
+program
+    .command('autonomous')
+    .description('Dry-run the 7-step protocol on a task (no work is executed; audit is simulated)')
+    .option('-d, --directory <path>', 'Project directory', '.')
+    .option('-t, --task <task>', 'Task description')
+    .option('--dna <pattern>', 'DNA pattern to use', 'enterprise-governance')
+    .option('--priority <level>', 'Mission priority', 'medium')
+    .action(async (options) => {
+    if (!options.task) {
+        console.error(chalk.red('Error: --task is required'));
+        process.exit(1);
+    }
+    const dir = options.directory;
+    const bos = new BehaviorOS();
+    console.log(chalk.blue(`Protocol dry run: ${options.task}`));
+    console.log(chalk.gray('No work is executed. The audit below is simulated (simulate: true).'));
+    console.log(chalk.gray('='.repeat(40)));
+    // Protocol step 1 — select DNA.
+    console.log(chalk.cyan('\n[Step 1/7] Select DNA'));
+    const loaded = await loadDnaForCommand(bos, dir, options.dna);
+    if (loaded) {
+        console.log(chalk.green(`  ✓ Loaded DNA: ${loaded}`));
+    }
+    else {
+        console.log(chalk.yellow(`  ⚠ No DNA loaded (looked for dnas/${options.dna}.yaml)`));
+        console.log(chalk.yellow('    Governance rules are unavailable without a DNA.'));
+    }
+    console.log(chalk.gray('  (steps 2–3 run interactively: bos_list_dna / bos_get_state)'));
+    // Pre-flight is not a protocol step: it is the real governance check.
+    const identity = bos.resolveAgentIdentity();
+    let verdict = null;
+    if (loaded) {
+        const decision = bos.evaluateGovernance('execute_task', {
+            agent: identity.agentId,
+            context: { task: options.task },
+        });
+        verdict = decision.verdict;
+        console.log(chalk[decision.verdict === 'deny' ? 'red' : 'green'](`  Pre-flight (governance): ${decision.verdict.toUpperCase()} — ${decision.reason}`));
+    }
+    else {
+        console.log(chalk.yellow('  Pre-flight (governance): skipped — no DNA loaded'));
+    }
+    // Protocol step 4 — create mission. requiredChecks mirrors the plugin's
+    // auto-mission: governance + audit must pass before completion is accepted.
+    console.log(chalk.cyan('\n[Step 4/7] Create mission'));
+    const mission = bos.createMission({
+        title: options.task,
+        type: 'feature',
+        priority: options.priority,
+        requiredChecks: ['governance', 'audit'],
+    });
+    console.log(chalk.green(`  ✓ Mission created: ${mission.id}`));
+    // Protocol step 5 — start mission.
+    console.log(chalk.cyan('\n[Step 5/7] Start mission'));
+    bos.startMission(mission.id);
+    console.log(chalk.green('  ✓ Mission started'));
+    // Protocol step 6 — run audit (simulated).
+    console.log(chalk.cyan('\n[Step 6/7] Run audit (simulated)'));
+    const report = await bos.runAudit({
+        missionId: mission.id,
+        agentId: identity.agentId,
+        simulate: true,
+    });
+    console.log(chalk[report.overall === 'pass' ? 'green' : 'yellow'](`  Audit: ${report.overall.toUpperCase()} (${report.summary})`));
+    // Protocol step 7 — record learning.
+    console.log(chalk.cyan('\n[Step 7/7] Record learning'));
+    const event = bos.recordLearning({
+        type: 'insight',
+        source: 'autonomous-dry-run',
+        content: `Dry run of task: ${options.task}`,
+        impact: verdict === 'deny' ? 'high' : 'medium',
+        relatedMission: mission.id,
+    });
+    console.log(chalk.green(`  ✓ Learning recorded: ${event.id}`));
+    // Close the mission created by the dry run. Since the audit was simulated
+    // (no real verification), the mission cannot be "completed" — it gets
+    // cancelled to close the lifecycle. This fixes the CLI lifecycle gap where
+    // autonomous created missions it could never close.
+    bos.cancelMission(mission.id);
+    const closed = bos.getMission(mission.id);
+    console.log(chalk.gray(`  Mission ${mission.id} closed (status: ${closed?.status ?? 'unknown'})`));
+    const statePath = join(dir, '.behavioros', 'state.json');
+    if (existsSync(statePath)) {
+        const state = JSON.parse(readFileSync(statePath, 'utf-8'));
+        state.stepHistory = [
+            ...(state.stepHistory || []),
+            { step: 7, timestamp: new Date().toISOString(), missionId: mission.id },
+        ];
+        state.updatedAt = new Date().toISOString();
+        writeFileSync(statePath, JSON.stringify(state, null, 2));
+        console.log(chalk.gray('  (state.json updated — not a protocol step)'));
+    }
+    console.log(chalk.green('\n✅ Protocol dry run completed — no work was executed.'));
+    console.log(chalk.gray(`  Mission: ${mission.id}`));
+    console.log(chalk.gray(`  Governance: ${verdict ?? 'skipped (no DNA)'}`));
+    console.log(chalk.gray(`  Audit: ${report.overall} (simulated)`));
+});
+// PROTOCOL command
+program
+    .command('protocol')
+    .description('Check the 7-step protocol against the local state file')
+    .option('-d, --directory <path>', 'Project directory', '.')
+    .action(async (options) => {
+    const dir = options.directory;
+    const statePath = join(dir, '.behavioros', 'state.json');
+    if (!existsSync(statePath)) {
+        console.log(chalk.yellow("No protocol state found. Run 'behavioros init' first."));
+        return;
+    }
+    const state = JSON.parse(readFileSync(statePath, 'utf-8'));
+    // Mirrors PROTOCOL_TOOL_STEPS in @behavior-os/core (engine/behavior-os.ts).
+    const steps = [
+        { num: 1, name: 'Select DNA', tool: 'bos_select_dna' },
+        { num: 2, name: 'Confirm DNA rules', tool: 'bos_list_dna' },
+        { num: 3, name: 'Resolve state', tool: 'bos_get_state' },
+        { num: 4, name: 'Create mission', tool: 'bos_create_mission' },
+        { num: 5, name: 'Start mission', tool: 'bos_start_mission' },
+        { num: 6, name: 'Run audit', tool: 'bos_run_audit' },
+        { num: 7, name: 'Record learning', tool: 'bos_record_learning' },
+    ];
+    console.log(chalk.blue('Protocol Compliance Check'));
+    console.log(chalk.gray('='.repeat(40)));
+    for (const step of steps) {
+        const completed = state.stepHistory?.some((h) => h.step === step.num);
+        const icon = completed ? chalk.green('✓') : chalk.yellow('○');
+        console.log(`${icon} Step ${step.num}: ${step.name} (${step.tool})`);
+    }
+    console.log(chalk.gray('\nThis reads .behavioros/state.json (written by `behavioros init`/`autonomous`).'));
+    console.log(chalk.gray('Live protocol state lives in the host: the plugin stores it via ctx.storage.'));
+});
+// DRIFT-CHECK command
+program
+    .command('drift-check')
+    .description('Compare dnas/*.yaml with .behavioros/baseline.json using DriftEngine')
+    .option('-d, --directory <path>', 'Project directory', '.')
+    .action(async (options) => {
+    const dir = options.directory;
+    console.log(chalk.blue('Checking for behavioral drift...'));
+    let report;
+    try {
+        report = await runDriftCheck(dir);
+    }
+    catch (error) {
+        console.log(chalk.red(`  Error comparing DNA snapshots: ${error instanceof Error ? error.message : error}`));
+        process.exitCode = 1;
+        return;
+    }
+    if (!report.baselineFound) {
+        console.log(chalk.yellow('  No baseline found. Create one with: behavioros diff'));
+        return;
+    }
+    if (report.findings.length === 0 && report.stateDrifts.length === 0) {
+        if (!report.dnasFound && report.compared === 0 && report.stateDrifts.length === 0) {
+            console.log(chalk.yellow('  No dnas/ directory found.'));
+            return;
+        }
+        if (!report.stateFound && report.compared === 0) {
+            console.log(chalk.yellow("  No current state found. Run 'behavioros init' first."));
+            return;
+        }
+        console.log(chalk.green(`  No drift detected. ${report.compared} DNA pattern(s) match the baseline.`));
+        return;
+    }
+    if (report.compared > 0) {
+        console.log(chalk.gray(`  Compared ${report.compared} DNA pattern(s) against the baseline.`));
+    }
+    for (const finding of report.findings) {
+        const message = finding.kind === 'changed'
+            ? `Drift in ${finding.pattern}: ${finding.summary.replace(/^Drift detected: /, '')}`
+            : finding.summary;
+        console.log(chalk.yellow(`  ⚠ ${message}`));
+    }
+    for (const drift of report.stateDrifts) {
+        console.log(chalk.yellow(`  ⚠ ${drift}`));
+    }
+    console.log(chalk.red(`\n  Drift detected: ${report.findings.length + report.stateDrifts.length} change(s).`));
+    process.exitCode = 1;
+});
+// METRICS command
+program
+    .command('metrics')
+    .description('Display governance metrics from the Behavior-OS engine')
+    .option('-d, --directory <path>', 'Project directory', '.')
+    .option('-j, --json', 'Output as JSON instead of formatted table')
+    .option('-r, --reset', 'Reset all metrics before reporting')
+    .action(async (options) => {
+    const dir = options.directory;
+    const pattern = process.env.BEHAVIOROS_DNA || 'surgical-team';
+    const bos = new BehaviorOS();
+    const loaded = await loadDnaForCommand(bos, dir, pattern);
+    if (options.reset) {
+        bos.resetMetrics();
+        console.log(chalk.gray('  ✓ Metrics reset'));
+    }
+    const metrics = bos.getMetrics();
+    if (options.json) {
+        console.log(JSON.stringify(metrics, null, 2));
+        return;
+    }
+    console.log(chalk.blue('Behavior-OS Governance Metrics'));
+    console.log(chalk.gray('='.repeat(40)));
+    console.log(chalk.gray(`DNA: ${loaded ?? 'none'}`));
+    console.log(chalk.gray(`Timestamp: ${metrics.timestamp}`));
+    console.log(chalk.gray(`Uptime: ${Math.round(metrics.uptimeMs / 1000)}s`));
+    // Governance overview
+    const gov = metrics.governance;
+    const total = gov.totalActions;
+    const denyPct = total > 0 ? ((gov.denied / total) * 100).toFixed(1) : '0.0';
+    console.log(chalk.yellow('\nGovernance:'));
+    console.log(`  Total actions:  ${total}`);
+    console.log(`  Allowed:        ${gov.allowed}`);
+    console.log(`  Denied:         ${gov.denied} (${denyPct}%)`);
+    console.log(`  Escalated:      ${gov.escalated}`);
+    console.log(`  Warned:         ${gov.warned}`);
+    console.log(`  Avg rules/action: ${gov.avgRulesPerAction.toFixed(1)}`);
+    if (gov.topRules.length > 0) {
+        console.log(chalk.yellow('\nTop firing rules:'));
+        for (const rule of gov.topRules) {
+            console.log(`  ${rule.id.padEnd(30)} ${rule.count}× (${rule.action})`);
+        }
+    }
+    if (gov.latencySamples && gov.latencySamples.length > 0) {
+        const sorted = [...gov.latencySamples].sort((a, b) => a - b);
+        const p50 = sorted[Math.floor(sorted.length * 0.5)];
+        const p95 = sorted[Math.floor(sorted.length * 0.95)];
+        console.log(chalk.yellow('\nLatency (ms):'));
+        console.log(`  p50: ${p50}`);
+        console.log(`  p95: ${p95}`);
+    }
+    // Learning summary
+    console.log(chalk.yellow('\nLearning:'));
+    console.log(`  Events total: ${metrics.learningEventsTotal}`);
+    const byType = Object.entries(metrics.learningEventsByType).sort((a, b) => b[1] - a[1]);
+    for (const [type, count] of byType.slice(0, 5)) {
+        console.log(`  ${type}: ${count}`);
+    }
+    // Consensus/prediction (if any)
+    if (metrics.consensus.totalRounds > 0) {
+        console.log(chalk.yellow('\nConsensus:'));
+        console.log(`  Rounds: ${metrics.consensus.totalRounds}`);
+        console.log(`  Approved: ${metrics.consensus.approved}`);
+        console.log(`  Rejected: ${metrics.consensus.rejected}`);
+    }
+    if (metrics.prediction.totalPredictions > 0) {
+        console.log(chalk.yellow('\nPredictions:'));
+        console.log(`  Total: ${metrics.prediction.totalPredictions}`);
+    }
+});
+program.parse();
+//# sourceMappingURL=cli.js.map

package/dist/cli.js.map

@@ -0,0 +1 @@
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package/dist/drift.d.ts

@@ -0,0 +1,62 @@
+import type { DNA } from '@behavior-os/schemas';
+/**
+ * A baseline written by `diff` maps a file stem to a parsed DNA document.
+ * Requiring at least one DNA collection keeps a malformed baseline from being
+ * silently compared as if it were a DNA map.
+ */
+export declare function isDnaSnapshot(value: unknown): value is DNA;
+/** Legacy baselines only carried the two state fields. */
+export declare function isLegacyStateBaseline(value: unknown): value is {
+    selectedDna?: unknown;
+    currentStep?: unknown;
+};
+/** Load every `dnas/*.yaml|yml` document, keyed by file stem. */
+export declare function loadDnaDirectory(dnasDir: string): Promise<Record<string, DNA>>;
+export type DriftFindingKind = 'new' | 'removed' | 'changed';
+export interface DriftFinding {
+    pattern: string;
+    kind: DriftFindingKind;
+    summary: string;
+    totalChanges: number;
+    significant: boolean;
+}
+export interface DriftComparison {
+    compared: number;
+    findings: DriftFinding[];
+    hasDrift: boolean;
+}
+/**
+ * Compare current DNA snapshots with a baseline using the facade's
+ * `compareDNADrift` (which delegates to `DriftEngine.compare`).
+ *
+ * Finding #11 fix: previously this function instantiated `new DriftEngine()`
+ * directly, bypassing the BehaviorOS facade. Now it creates a BehaviorOS
+ * instance with the default (no-persistence) mode so the comparison goes
+ * through the same engine resolution path as every other host.
+ *
+ * `DriftEngine` is the source of truth for governance-rule and quality-gate
+ * drift; this wrapper only adds the repository-level cases the engine cannot
+ * see (a pattern added or removed since the baseline).
+ */
+export declare function compareDnaSnapshots(current: Record<string, DNA>, baseline: Record<string, DNA>): DriftComparison;
+/** Compare the legacy state baseline fields, if present. */
+export declare function compareStateToBaseline(state: unknown, baseline: unknown): string[];
+export interface DriftCheckReport {
+    baselineFound: boolean;
+    dnasFound: boolean;
+    stateFound: boolean;
+    compared: number;
+    findings: DriftFinding[];
+    stateDrifts: string[];
+    hasDrift: boolean;
+}
+/**
+ * Run a drift check against a project directory.
+ *
+ * A baseline from `diff` is a DNA snapshot map. Older/state-only baselines are
+ * still accepted so existing projects keep working. Invalid JSON or a
+ * malformed DNA entry throws; the CLI turns that into exit code 1 instead of
+ * pretending the check passed.
+ */
+export declare function runDriftCheck(directory: string): Promise<DriftCheckReport>;
+//# sourceMappingURL=drift.d.ts.map

package/dist/drift.d.ts.map

@@ -0,0 +1 @@
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package/dist/drift.js

@@ -0,0 +1,180 @@
+import { existsSync, readFileSync } from 'node:fs';
+import { readdir, readFile } from 'node:fs/promises';
+import { join } from 'node:path';
+import { BehaviorOS } from '@behavior-os/core';
+import { load } from 'js-yaml';
+function isRecord(value) {
+    return typeof value === 'object' && value !== null && !Array.isArray(value);
+}
+/**
+ * A baseline written by `diff` maps a file stem to a parsed DNA document.
+ * Requiring at least one DNA collection keeps a malformed baseline from being
+ * silently compared as if it were a DNA map.
+ */
+export function isDnaSnapshot(value) {
+    return (isRecord(value) &&
+        typeof value.name === 'string' &&
+        (Array.isArray(value.personas) ||
+            Array.isArray(value.governance) ||
+            Array.isArray(value.quality)));
+}
+/** Legacy baselines only carried the two state fields. */
+export function isLegacyStateBaseline(value) {
+    return isRecord(value) && ('selectedDna' in value || 'currentStep' in value);
+}
+/** Load every `dnas/*.yaml|yml` document, keyed by file stem. */
+export async function loadDnaDirectory(dnasDir) {
+    const files = await readdir(dnasDir);
+    const snapshots = {};
+    for (const file of files) {
+        if (!file.endsWith('.yaml') && !file.endsWith('.yml'))
+            continue;
+        const content = await readFile(join(dnasDir, file), 'utf8');
+        const parsed = load(content);
+        if (!isDnaSnapshot(parsed)) {
+            throw new Error(`${file}: parsed document is not a DNA snapshot`);
+        }
+        snapshots[file.replace(/\.(yaml|yml)$/, '')] = parsed;
+    }
+    return snapshots;
+}
+/**
+ * Compare current DNA snapshots with a baseline using the facade's
+ * `compareDNADrift` (which delegates to `DriftEngine.compare`).
+ *
+ * Finding #11 fix: previously this function instantiated `new DriftEngine()`
+ * directly, bypassing the BehaviorOS facade. Now it creates a BehaviorOS
+ * instance with the default (no-persistence) mode so the comparison goes
+ * through the same engine resolution path as every other host.
+ *
+ * `DriftEngine` is the source of truth for governance-rule and quality-gate
+ * drift; this wrapper only adds the repository-level cases the engine cannot
+ * see (a pattern added or removed since the baseline).
+ */
+export function compareDnaSnapshots(current, baseline) {
+    const bos = new BehaviorOS();
+    const findings = [];
+    let compared = 0;
+    for (const [pattern, dna] of Object.entries(current)) {
+        const previous = baseline[pattern];
+        if (!previous) {
+            findings.push({
+                pattern,
+                kind: 'new',
+                summary: `New DNA pattern: ${pattern}`,
+                totalChanges: 0,
+                significant: true,
+            });
+            continue;
+        }
+        compared += 1;
+        const drift = bos.compareDNADrift(previous, dna);
+        if (drift.totalChanges > 0) {
+            findings.push({
+                pattern,
+                kind: 'changed',
+                summary: drift.summary,
+                totalChanges: drift.totalChanges,
+                significant: drift.significant,
+            });
+        }
+    }
+    for (const pattern of Object.keys(baseline)) {
+        if (!(pattern in current)) {
+            findings.push({
+                pattern,
+                kind: 'removed',
+                summary: `Removed DNA pattern: ${pattern}`,
+                totalChanges: 0,
+                significant: true,
+            });
+        }
+    }
+    return { compared, findings, hasDrift: findings.length > 0 };
+}
+/** Compare the legacy state baseline fields, if present. */
+export function compareStateToBaseline(state, baseline) {
+    if (!isRecord(state) || !isRecord(baseline))
+        return [];
+    const drifts = [];
+    if ('selectedDna' in baseline && state.selectedDna !== baseline.selectedDna) {
+        drifts.push(`DNA pattern changed: ${String(baseline.selectedDna)} → ${String(state.selectedDna)}`);
+    }
+    if ('currentStep' in baseline && state.currentStep !== baseline.currentStep) {
+        drifts.push(`Protocol step changed: ${String(baseline.currentStep)} → ${String(state.currentStep)}`);
+    }
+    return drifts;
+}
+/**
+ * Run a drift check against a project directory.
+ *
+ * A baseline from `diff` is a DNA snapshot map. Older/state-only baselines are
+ * still accepted so existing projects keep working. Invalid JSON or a
+ * malformed DNA entry throws; the CLI turns that into exit code 1 instead of
+ * pretending the check passed.
+ */
+export async function runDriftCheck(directory) {
+    const dnasDir = join(directory, 'dnas');
+    const baselinePath = join(directory, '.behavioros', 'baseline.json');
+    const statePath = join(directory, '.behavioros', 'state.json');
+    const dnasFound = existsSync(dnasDir);
+    const stateFound = existsSync(statePath);
+    if (!existsSync(baselinePath)) {
+        return {
+            baselineFound: false,
+            dnasFound,
+            stateFound,
+            compared: 0,
+            findings: [],
+            stateDrifts: [],
+            hasDrift: false,
+        };
+    }
+    const baseline = JSON.parse(readFileSync(baselinePath, 'utf8'));
+    if (isLegacyStateBaseline(baseline)) {
+        if (!stateFound) {
+            return {
+                baselineFound: true,
+                dnasFound,
+                stateFound: false,
+                compared: 0,
+                findings: [],
+                stateDrifts: [],
+                hasDrift: false,
+            };
+        }
+        const state = JSON.parse(readFileSync(statePath, 'utf8'));
+        const stateDrifts = compareStateToBaseline(state, baseline);
+        return {
+            baselineFound: true,
+            dnasFound,
+            stateFound: true,
+            compared: 0,
+            findings: [],
+            stateDrifts,
+            hasDrift: stateDrifts.length > 0,
+        };
+    }
+    if (!isRecord(baseline)) {
+        throw new Error('baseline.json must be a DNA map or a state baseline object');
+    }
+    const baselineDnas = {};
+    for (const [pattern, value] of Object.entries(baseline)) {
+        if (!isDnaSnapshot(value)) {
+            throw new Error(`baseline entry "${pattern}" is not a DNA snapshot`);
+        }
+        baselineDnas[pattern] = value;
+    }
+    const current = dnasFound ? await loadDnaDirectory(dnasDir) : {};
+    const comparison = compareDnaSnapshots(current, baselineDnas);
+    return {
+        baselineFound: true,
+        dnasFound,
+        stateFound,
+        compared: comparison.compared,
+        findings: comparison.findings,
+        stateDrifts: [],
+        hasDrift: comparison.hasDrift,
+    };
+}
+//# sourceMappingURL=drift.js.map

package/dist/drift.js.map

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package/dist/index.d.ts

@@ -0,0 +1,2 @@
+export * from './cli.js';
+//# sourceMappingURL=index.d.ts.map

package/dist/index.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,cAAc,UAAU,CAAC"}

package/dist/index.js

@@ -0,0 +1,2 @@
+export * from './cli.js';
+//# sourceMappingURL=index.js.map

package/dist/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,cAAc,UAAU,CAAC"}

package/package.json

@@ -1,6 +1,31 @@
 {
   "name": "@behavior-os/cli",
-  "version": "0.0.0-stage",
-  "stub": true,
-  "description": "Temporary package placeholder for staged publishing"
-}
+  "version": "2.2.0",
+  "description": "CLI for Behavior-OS initialization and management",
+  "type": "module",
+  "main": "./dist/index.js",
+  "bin": {
+    "behavioros": "./dist/cli.js"
+  },
+  "scripts": {
+    "build": "tsc -p tsconfig.build.json",
+    "test": "vitest run",
+    "typecheck": "tsc --noEmit -p tsconfig.json",
+    "clean": "node ../../scripts/clean.mjs"
+  },
+  "dependencies": {
+    "@behavior-os/core": "workspace:*",
+    "@behavior-os/schemas": "workspace:*",
+    "commander": "^12.0.0",
+    "chalk": "^5.3.0",
+    "js-yaml": "^5.4.3"
+  },
+  "files": [
+    "dist/"
+  ],
+  "devDependencies": {
+    "@types/node": "^22.0.0",
+    "typescript": "~5.9.3",
+    "vitest": "^4.1.11"
+  }
+}

package/README.md

@@ -1,3 +0,0 @@
-# Temporary Holding Version
-
-This version is a temporary placeholder for this package. An operational version to replace this has been submitted for review and is awaiting a staged release.