@bastani/atomic 0.9.8 → 0.9.9-alpha.2

package/CHANGELOG.md

@@ -2,6 +2,42 @@
 
 ## [Unreleased]
 
+## [0.9.9-alpha.2] - 2026-07-14
+
+### Changed
+
+- Updated the Pi runtime dependency set (`@earendil-works/pi-agent-core`, `pi-ai`, and `pi-tui`) from `^0.80.6` to `^0.80.7` across Atomic and its bundled packages, with matching Bun and npm lock metadata. This inherits the upstream provider authentication, session-affinity, reasoning replay, tool-choice, model-catalog, terminal input, and prompt-cache fixes from [Pi v0.80.7](https://github.com/earendil-works/pi/releases/tag/v0.80.7) while preserving versionless `0.0.0` workspace manifests.
+- Consolidated ten closed Dependabot updates into the Pi v0.80.7 branch: `linkedom` 0.18.13, npm `ignore` 7.0.6, `@typescript/native-preview` 7.0.0-dev.20260707.2, `typebox` 1.3.6, TypeScript 7.0.2, and the native dependency refreshes documented in `@bastani/atomic-natives`; regenerated the Bun, npm, and publish shrinkwrap dependency graphs without changing workspace package versions.
+- Added an Atomic `StringEnum` export that preserves Pi's Google-compatible enum schema while bridging Pi 0.80.7's TypeBox identity to the direct TypeBox 1.3.6 types; updated bundled extension examples and documentation to use the portable export, and updated TypeScript fixture configs for TypeScript 7's removal of `baseUrl`.
+
+## [0.9.9-alpha.1] - 2026-07-14
+
+### Breaking Changes
+
+- Replaced deletion-target context compaction with durable verbatim line compaction. Legacy `context_compaction` entries are now inert archival records, so content they previously hid may re-enter context when old sessions resume; start a new conversation or compact again to establish a new boundary.
+- Removed the deprecated `contextCompact()` SDK method, `context_compact` RPC command, and `context_compaction_start`/`context_compaction_end` events. Use `compact()` and `compaction_start`/`compaction_end`.
+- Changed extension compaction hooks: `session_before_compact` now accepts `cancel` or a complete non-empty `compactedText` override instead of `deletionRequest`; `session_compact` exposes `VerbatimCompactionResult` and the saved `compactionEntry`.
+
+### Added
+
+- Added one-pass contextual line-ranking compaction: Atomic asks the active session model at its active reasoning level, through the normal session stream/provider wrapper, for one whole-region compact `{"d":[[start,end],...]}` deletion plan, then safety-normalizes ranges and mechanically reconstructs verbatim text with cumulative `(filtered N lines)` markers.
+- Added strict pi-style compaction failure semantics: oversized prompts, provider/API errors or overflow, aborts, malformed JSON, and empty/unusable ranges fail without persistence or continuation and without semantic retries, chunking, critical replans, deterministic fallback, or deterministic target correction.
+- Added durable pi-style `CompactionEntry` boundaries discriminated by `details.strategy: "verbatim-lines"`, plus resumable custom-role boundary messages and a collapsible TUI card showing retained-line and token-reduction statistics.
+
+### Changed
+
+- Changed `compression_ratio` to explicitly represent the fraction of compactable lines to keep. `preserve_recent` is enforced client-side, widens the tail to a user-turn start, and always protects the final logical turn. Role headers are now ordinary ranked lines; only explicit protected spans are split out of model-selected deletion ranges.
+- Simplified resume reconstruction to load the persisted compacted string followed by original messages from `firstKeptEntryId`; no deletion filters, signed-thinking repair pass, or tool dependency repair is re-derived.
+- Retuned the one-pass compaction classifier's retention guidance to surgically thin long tool results, preserve compact diagnostic/code/state anchors, prune repeated retry and superseded bodies, and treat formatting, stack position, markers, and query matches as contextual rather than hard categories.
+
+
+### Fixed
+
+- Fixed resumed sessions resurrecting records hidden by earlier Verbatim Compaction entries after later compactions changed signed-thinking turn or tool-call/result dependencies. Persisted logical deletions are now an authoritative lower bound during every context rebuild: Atomic closes unsafe replay structures by adding transient omissions instead of restoring compacted calls/results, pairs each result with its concrete call occurrence so independent exchanges may reuse an opaque call ID, leaves unrelated retained history unchanged, and keeps the append-only session file intact.
+- Fixed successful manual and automatic compaction UI refreshes to render the compacted transcript with exactly one visible `✻ Context compacted` boundary, while aborted and failed compactions remain unchanged.
+- Fixed the bundled workflows `/workflow resume` experience to mix successful completed workflows into the existing globally newest-first, deduplicated picker with green completed styling, resolve full IDs and prefixes across live, durable, and completed targets, and reopen retained stage chats for follow-up without re-running workflow code or replaying side effects. Completed durable state is retained for authoritative inspection; rows need checkpoints and at least one strictly valid retained conversation, invalid per-stage transcript paths cannot open chat, repeated inspection refreshes changed authoritative chat handles, and selector mount failures close safely. ([#1532](https://github.com/bastani-inc/atomic/issues/1532))
+- Fixed workflow-owned transcripts leaking into normal `/resume`, `-r`, `-c`, and `--continue` history by requiring complete workflow ownership markers, persisting classification in initial fork headers, inheriting it across branches, and keeping malformed legacy markers and ordinary user forks visible.
+
 ## [0.9.8] - 2026-07-12
 
 ### Changed

package/dist/builtin/cursor/CHANGELOG.md

@@ -2,6 +2,18 @@
 
 ## [Unreleased]
 
+## [0.9.9-alpha.2] - 2026-07-14
+
+### Changed
+
+- Aligned the Cursor provider dependency with `@earendil-works/pi-ai` `^0.80.7` as part of the consolidated Pi v0.80.7 dependency update; no Cursor provider source changes were needed.
+
+## [0.9.9-alpha.1] - 2026-07-14
+
+### Changed
+
+- Published a synchronized Atomic 0.9.9-alpha.1 prerelease for the Cursor provider package; no functional Cursor provider changes were made after 0.9.8.
+
 ## [0.9.8] - 2026-07-12
 
 ### Changed

package/dist/builtin/cursor/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@bastani/cursor",
-  "version": "0.9.8",
+  "version": "0.9.9-alpha.2",
   "private": true,
   "description": "Experimental first-party Atomic extension for Cursor OAuth, model discovery, and streaming provider registration.",
   "contributors": [
@@ -40,8 +40,8 @@
     }
   },
   "dependencies": {
-    "@bastani/atomic-natives": "0.9.8",
+    "@bastani/atomic-natives": "0.9.9-alpha.2",
     "@bufbuild/protobuf": "^2.12.1",
-    "@earendil-works/pi-ai": "^0.80.6"
+    "@earendil-works/pi-ai": "^0.80.7"
   }
 }

package/dist/builtin/intercom/CHANGELOG.md

@@ -4,6 +4,19 @@ All notable changes to the `pi-intercom` extension will be documented in this fi
 
 ## [Unreleased]
 
+## [0.9.9-alpha.2] - 2026-07-14
+
+### Changed
+
+- Aligned the intercom extension peer dependency with `@earendil-works/pi-tui` `^0.80.7` as part of the consolidated Pi v0.80.7 dependency update; no intercom source changes were needed.
+- Updated the runtime `typebox` range to `^1.3.6`.
+
+## [0.9.9-alpha.1] - 2026-07-14
+
+### Changed
+
+- Published a synchronized Atomic 0.9.9-alpha.1 prerelease for the intercom extension; no functional intercom changes were made after 0.9.8.
+
 ## [0.9.8] - 2026-07-12
 
 ### Changed

package/dist/builtin/intercom/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@bastani/intercom",
-  "version": "0.9.8",
+  "version": "0.9.9-alpha.2",
   "private": true,
   "description": "Atomic extension providing a private coordination channel between parent and child agent sessions. Fork of: https://github.com/nicobailon/pi-intercom",
   "contributors": [
@@ -44,7 +44,7 @@
   },
   "peerDependencies": {
     "@bastani/atomic": "*",
-    "@earendil-works/pi-tui": "^0.80.6"
+    "@earendil-works/pi-tui": "^0.80.7"
   },
   "peerDependenciesMeta": {
     "@bastani/atomic": {
@@ -56,6 +56,6 @@
   },
   "dependencies": {
     "tsx": "^4.20.6",
-    "typebox": "^1.1.24"
+    "typebox": "^1.3.6"
   }
 }

package/dist/builtin/mcp/CHANGELOG.md

@@ -7,6 +7,19 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ## [Unreleased]
 
+## [0.9.9-alpha.2] - 2026-07-14
+
+### Changed
+
+- Aligned the MCP extension peer dependencies with `@earendil-works/pi-ai` and `@earendil-works/pi-tui` `^0.80.7` as part of the consolidated Pi v0.80.7 dependency update; no MCP source changes were needed.
+- Updated the runtime `typebox` range to `^1.3.6`.
+
+## [0.9.9-alpha.1] - 2026-07-14
+
+### Changed
+
+- Published a synchronized Atomic 0.9.9-alpha.1 prerelease for the MCP extension; no functional MCP changes were made after 0.9.8.
+
 ## [0.9.8] - 2026-07-12
 
 ### Changed

package/dist/builtin/mcp/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@bastani/mcp",
-  "version": "0.9.8",
+  "version": "0.9.9-alpha.2",
   "private": true,
   "description": "Atomic extension that adapts MCP (Model Context Protocol) servers into the coding agent. Fork of: https://github.com/nicobailon/pi-mcp-adapter",
   "contributors": [
@@ -32,8 +32,8 @@
   },
   "peerDependencies": {
     "@bastani/atomic": "*",
-    "@earendil-works/pi-ai": "^0.80.6",
-    "@earendil-works/pi-tui": "^0.80.6",
+    "@earendil-works/pi-ai": "^0.80.7",
+    "@earendil-works/pi-tui": "^0.80.7",
     "zod": "^3.25.0 || ^4.0.0"
   },
   "peerDependenciesMeta": {
@@ -51,7 +51,7 @@
     "@modelcontextprotocol/ext-apps": "^1.7.4",
     "@modelcontextprotocol/sdk": "^1.25.1",
     "open": "^11.0.0",
-    "typebox": "^1.1.24",
+    "typebox": "^1.3.6",
     "zod": "^3.25.0 || ^4.0.0"
   }
 }

package/dist/builtin/subagents/CHANGELOG.md

@@ -2,6 +2,19 @@
 
 ## [Unreleased]
 
+## [0.9.9-alpha.2] - 2026-07-14
+
+### Changed
+
+- Aligned the subagents extension peer dependencies with the `@earendil-works/pi-agent-core`, `pi-ai`, and `pi-tui` `^0.80.7` runtime set as part of the consolidated Pi v0.80.7 dependency update; no subagent source changes were needed.
+- Updated the runtime `typebox` range to `^1.3.6`.
+
+## [0.9.9-alpha.1] - 2026-07-14
+
+### Fixed
+
+- Fixed first-party subagent transcripts launched inside workflow stages to inherit complete workflow ownership metadata in foreground and background execution, while fork-context children also inherit classification through the branched JSONL header.
+
 ## [0.9.8] - 2026-07-12
 
 ### Changed

package/dist/builtin/subagents/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@bastani/subagents",
-  "version": "0.9.8",
+  "version": "0.9.9-alpha.2",
   "private": true,
   "description": "Atomic extension for delegating tasks to subagents with chains, parallel execution, and background runs. Fork of: https://github.com/nicobailon/pi-subagents",
   "contributors": [
@@ -38,9 +38,9 @@
   },
   "peerDependencies": {
     "@bastani/atomic": "*",
-    "@earendil-works/pi-agent-core": "^0.80.6",
-    "@earendil-works/pi-ai": "^0.80.6",
-    "@earendil-works/pi-tui": "^0.80.6"
+    "@earendil-works/pi-agent-core": "^0.80.7",
+    "@earendil-works/pi-ai": "^0.80.7",
+    "@earendil-works/pi-tui": "^0.80.7"
   },
   "peerDependenciesMeta": {
     "@bastani/atomic": {
@@ -58,6 +58,6 @@
   },
   "dependencies": {
     "jiti": "^2.7.0",
-    "typebox": "^1.1.24"
+    "typebox": "^1.3.6"
   }
 }

package/dist/builtin/subagents/src/runs/background/async-execution-chain.ts

@@ -6,6 +6,7 @@ import { getSubagentCodexFastModeSettings, resolveSubagentCodexFastModeScope, re
 import { resolveEffectiveThinking } from "../../shared/model-info.ts";
 import { buildChainInstructions, isDynamicParallelStep, isParallelStep, resolveStepBehavior, suppressProgressForReadOnlyTask, writeInitialProgressFile, type ResolvedStepBehavior, type SequentialStep, type StepOverrides } from "../../shared/settings.ts";
 import { ASYNC_DIR, RESULTS_DIR, SUBAGENT_ASYNC_STARTED_EVENT, resolveChildMaxSubagentDepth } from "../../shared/types.ts";
+import { workflowSessionEnv } from "../../shared/types-depth.ts";
 import { resolveChildCwd } from "../../shared/utils.ts";
 import { applyThinkingSuffix, SUBAGENT_INTERCOM_SESSION_NAME_ENV } from "../shared/pi-args.ts";
 import type { RunnerStep } from "../shared/parallel-utils.ts";
@@ -305,6 +306,7 @@ export function executeAsyncChain(
 			},
 			id,
 			runnerCwd,
+			workflowSessionEnv(ctx.workflowSessionMetadata),
 		);
 	} catch (error) {
 		const message = error instanceof Error ? error.message : String(error);

package/dist/builtin/subagents/src/runs/background/async-execution-common.ts

@@ -85,7 +85,12 @@ export function writeAsyncRunnerConfig(cfg: object, suffix: string): string {
 	return cfgPath;
 }
 
-export function spawnRunner(cfg: object, suffix: string, cwd: string): AsyncSpawnResult {
+export function spawnRunner(
+	cfg: object,
+	suffix: string,
+	cwd: string,
+	env?: Record<string, string>,
+): AsyncSpawnResult {
 	const cwdValidation = validatePiSpawnCwd(cwd);
 	if (!cwdValidation.ok) return { error: cwdValidation.error };
 
@@ -101,6 +106,7 @@ export function spawnRunner(cfg: object, suffix: string, cwd: string): AsyncSpaw
 	try {
 		proc = spawn(spawnSpec.command, spawnSpec.args, {
 			cwd,
+			env: { ...process.env, ...env },
 			detached: true,
 			stdio: "ignore",
 			windowsHide: true,

package/dist/builtin/subagents/src/runs/background/async-execution-single.ts

@@ -6,6 +6,7 @@ import { getSubagentCodexFastModeSettings, resolveSubagentCodexFastModeScope, re
 import { resolveEffectiveThinking } from "../../shared/model-info.ts";
 import { injectSingleProgressInstruction, writeInitialProgressFile } from "../../shared/settings.ts";
 import { ASYNC_DIR, RESULTS_DIR, SUBAGENT_ASYNC_STARTED_EVENT, resolveChildMaxSubagentDepth } from "../../shared/types.ts";
+import { workflowSessionEnv } from "../../shared/types-depth.ts";
 import { resolveChildCwd } from "../../shared/utils.ts";
 import { applyThinkingSuffix, SUBAGENT_INTERCOM_SESSION_NAME_ENV } from "../shared/pi-args.ts";
 import { injectSingleOutputInstruction, normalizeSingleOutputOverride, resolveSingleOutputPath, validateFileOnlyOutputMode } from "../shared/single-output.ts";
@@ -170,6 +171,7 @@ export function executeAsyncSingle(
 			},
 			id,
 			runnerCwd,
+			workflowSessionEnv(ctx.workflowSessionMetadata),
 		);
 	} catch (error) {
 		const message = error instanceof Error ? error.message : String(error);

package/dist/builtin/subagents/src/runs/background/async-execution-types.ts

@@ -1,4 +1,4 @@
-import type { ExtensionAPI } from "@bastani/atomic";
+import type { ExtensionAPI, SessionWorkflowMetadata } from "@bastani/atomic";
 import type { AgentConfig } from "../../agents/agents.ts";
 import type { ChainStep } from "../../shared/settings.ts";
 import type { AvailableModelInfo } from "../shared/model-fallback.ts";
@@ -17,6 +17,7 @@ export interface AsyncExecutionContext {
 	currentSessionId: string;
 	currentModelProvider?: string;
 	currentModel?: string;
+	workflowSessionMetadata?: SessionWorkflowMetadata;
 }
 
 export interface AsyncChainParams {
@@ -74,7 +75,12 @@ export interface AsyncSingleParams {
 	childIntercomTarget?: (agent: string, index: number) => string | undefined;
 	nestedRoute?: NestedRouteInfo;
 	/** Internal launch seam used by focused runtime tests. */
-	spawnRunner?: (config: object, suffix: string, cwd: string) => AsyncSpawnResult;
+	spawnRunner?: (
+		config: object,
+		suffix: string,
+		cwd: string,
+		env?: Record<string, string>,
+	) => AsyncSpawnResult;
 }
 
 export interface AsyncExecutionResult {

package/dist/builtin/subagents/src/runs/foreground/chain-execution-parallel-runner.ts

@@ -2,6 +2,7 @@ import * as path from "node:path";
 import { INTERCOM_BRIDGE_MARKER } from "../../intercom/intercom-bridge.ts";
 import { mapConcurrent, resolveChildCwd } from "../../shared/utils.ts";
 import { MAX_CONCURRENCY, resolveChildMaxSubagentDepth, type SingleResult } from "../../shared/types.ts";
+import { workflowSessionMetadataFromContext } from "../../shared/types-depth.ts";
 import {
 	buildChainInstructions,
 	suppressProgressForReadOnlyTask,
@@ -118,6 +119,7 @@ export async function runParallelChainTasks(input: ParallelChainRunInput): Promi
 			outputMode: behavior.outputMode,
 			maxSubagentDepth,
 			workflowStageSubagentGuard: input.workflowStageSubagentGuard,
+			workflowSessionMetadata: workflowSessionMetadataFromContext(input.ctx),
 			controlConfig: input.controlConfig,
 			onControlEvent: input.onControlEvent,
 			intercomSessionName: input.childIntercomTarget?.(task.agent, input.globalTaskIndex + taskIndex),

package/dist/builtin/subagents/src/runs/foreground/chain-execution-sequential-step.ts

@@ -13,6 +13,7 @@ import {
 import { getSingleResultOutput, resolveChildCwd } from "../../shared/utils.ts";
 import { normalizeSkillInput } from "../../agents/skills.ts";
 import { resolveChildMaxSubagentDepth } from "../../shared/types.ts";
+import { workflowSessionMetadataFromContext } from "../../shared/types-depth.ts";
 import { outputEntryFromResult, resolveOutputReferences } from "../shared/chain-outputs.ts";
 import { currentModelFullId, resolveModelCandidate } from "../shared/model-fallback.ts";
 import { recordRun } from "../shared/run-history.ts";
@@ -116,6 +117,7 @@ export async function runSequentialChainStep(input: {
 		outputMode: behavior.outputMode,
 		maxSubagentDepth,
 		workflowStageSubagentGuard: context.params.workflowStageSubagentGuard,
+		workflowSessionMetadata: workflowSessionMetadataFromContext(context.params.ctx),
 		controlConfig: context.controlConfig,
 		onControlEvent: context.onControlEvent,
 		intercomSessionName: context.childIntercomTarget?.(seqStep.agent, flatIndex),

package/dist/builtin/subagents/src/runs/foreground/execution-attempt.ts

@@ -75,6 +75,7 @@ export async function runSingleAttempt(
 		parentCapabilityToken: options.nestedRoute?.capabilityToken,
 		codexFastModeSettings: shared.fastModeSettings,
 		codexFastModeScope: shared.fastModeScope,
+		workflowSessionMetadata: options.workflowSessionMetadata,
 		structuredOutput: options.structuredOutput,
 	});
 	const result: SingleResult = {
@@ -129,7 +130,7 @@ export async function runSingleAttempt(
 		});
 	}
 	const exitCode = await new Promise<number>((resolve) => {
-		const spawnSpec = getPiSpawnCommand(args);
+		const spawnSpec = getPiSpawnCommand(args, options.piArgv1 ? { argv1: options.piArgv1 } : {});
 		const proc = spawn(spawnSpec.command, spawnSpec.args, {
 			cwd: runCwd,
 			env: spawnEnv,

package/dist/builtin/subagents/src/runs/foreground/subagent-executor-async.ts

@@ -9,6 +9,7 @@ import {
 	resolveSubagentDepthPolicy,
 	resolveTopLevelParallelConcurrency,
 	resolveTopLevelParallelMaxTasks,
+	workflowSessionMetadataFromContext,
 	wrapForkTask,
 } from "../../shared/types.ts";
 import { resolveSingleProgress, type ChainStep } from "../../shared/settings.ts";
@@ -74,6 +75,7 @@ export function runAsyncPath(data: ExecutionContextData, deps: ResolvedExecutorD
 		currentSessionId: deps.state.currentSessionId!,
 		currentModelProvider: ctx.model?.provider,
 		currentModel: currentModelFullId(ctx.model),
+		workflowSessionMetadata: workflowSessionMetadataFromContext(ctx),
 	};
 	const availableModels: ModelInfo[] = ctx.modelRegistry.getAvailable().map(toModelInfo);
 	const knownModelProviders = collectKnownModelProviders(ctx.modelRegistry);

package/dist/builtin/subagents/src/runs/foreground/subagent-executor-parallel-task.ts

@@ -6,6 +6,7 @@ import { INTERCOM_BRIDGE_MARKER } from "../../intercom/intercom-bridge.ts";
 import type { AgentConfig } from "../../agents/agents.ts";
 import type { ModelInfo } from "../../shared/model-info.ts";
 import type { WorktreeSetup } from "../shared/worktree.ts";
+import { workflowSessionMetadataFromContext } from "../../shared/types-depth.ts";
 import {
 	type AgentProgress,
 	type ArtifactConfig,
@@ -105,6 +106,7 @@ export async function runForegroundParallelTasks(input: ForegroundParallelRunInp
 			outputMode: behavior?.outputMode,
 			maxSubagentDepth: input.maxSubagentDepths[index],
 			workflowStageSubagentGuard: input.workflowStageSubagentGuard,
+			workflowSessionMetadata: workflowSessionMetadataFromContext(input.ctx),
 			controlConfig: input.controlConfig,
 			onControlEvent: input.onControlEvent,
 			intercomSessionName: input.childIntercomTarget?.(task.agent, index),

package/dist/builtin/subagents/src/runs/foreground/subagent-executor-resume.ts

@@ -33,6 +33,7 @@ import {
 	isWorkflowStageOrchestrationContext,
 	resolveSubagentDepthPolicy,
 	resolveWorkflowStageMaxSubagentDepth,
+	workflowSessionMetadataFromContext,
 	subagentDepthBlockedMessage,
 	type ArtifactConfig,
 	type NestedRunSummary,
@@ -427,6 +428,7 @@ export async function resumeAsyncRun(input: {
 			currentSessionId: input.deps.state.currentSessionId,
 			currentModelProvider: input.ctx.model?.provider,
 			currentModel: currentModelFullId(input.ctx.model),
+			workflowSessionMetadata: workflowSessionMetadataFromContext(input.ctx),
 		},
 		cwd: effectiveCwd,
 		maxOutput: input.params.maxOutput,

package/dist/builtin/subagents/src/runs/foreground/subagent-executor-single.ts

@@ -21,6 +21,7 @@ import {
 import {
 	resolveChildMaxSubagentDepth,
 	resolveSubagentDepthPolicy,
+	workflowSessionMetadataFromContext,
 	wrapForkTask,
 	type AgentProgress,
 	type ArtifactPaths,
@@ -179,6 +180,7 @@ export async function runSinglePath(data: ExecutionContextData, deps: ResolvedEx
 			outputMode: effectiveOutputMode,
 			maxSubagentDepth,
 			workflowStageSubagentGuard,
+			workflowSessionMetadata: workflowSessionMetadataFromContext(ctx),
 			onUpdate: forwardSingleUpdate,
 			controlConfig,
 			onControlEvent,

package/dist/builtin/subagents/src/runs/shared/pi-args.ts

@@ -8,6 +8,8 @@ import {
 	getEnvValue,
 	type CodexFastModeResolvedSettings,
 	type CodexFastModeScope,
+	type SessionWorkflowMetadata,
+	WORKFLOW_SESSION_METADATA_ENV,
 } from "@bastani/atomic";
 import { encodeNestedPathEnv, parseNestedPathEnv, type NestedPathEntry } from "./nested-path.ts";
 import { resolveMcpDirectToolNames } from "./mcp-direct-tool-allowlist.ts";
@@ -72,6 +74,7 @@ interface BuildPiArgsInput {
 	parentCapabilityToken?: string;
 	codexFastModeSettings?: CodexFastModeResolvedSettings;
 	codexFastModeScope?: CodexFastModeScope;
+	workflowSessionMetadata?: SessionWorkflowMetadata;
 	structuredOutput?: {
 		schema: JsonSchemaObject;
 		schemaPath: string;
@@ -201,6 +204,9 @@ export function buildPiArgs(input: BuildPiArgsInput): BuildPiArgsResult {
 	const env: Record<string, string | undefined> = {};
 	env[SUBAGENT_CHILD_ENV] = "1";
 	env[SUBAGENT_FANOUT_CHILD_ENV] = fanoutAuthorized ? "1" : "0";
+	if (input.workflowSessionMetadata) {
+		env[WORKFLOW_SESSION_METADATA_ENV] = JSON.stringify(input.workflowSessionMetadata);
+	}
 	if (input.codexFastModeSettings) {
 		env[ENV_CODEX_FAST_MODE] = serializeChildCodexFastModeSettings(
 			mapChildCodexFastModeSettings(input.codexFastModeSettings, input.codexFastModeScope ?? "chat"),

package/dist/builtin/subagents/src/shared/types-config.ts

@@ -3,6 +3,7 @@
  */
 
 import type { AgentToolResult } from "@earendil-works/pi-agent-core";
+import type { SessionWorkflowMetadata } from "@bastani/atomic";
 import type { NestedRouteInfo } from "./types-async.ts";
 import type {
 	ArtifactConfig,
@@ -72,11 +73,14 @@ export interface RunSyncOptions {
 	index?: number;
 	sessionDir?: string;
 	sessionFile?: string;
+	/** Override the Atomic CLI entrypoint used by foreground child processes. */
+	piArgv1?: string;
 	share?: boolean;
 	outputPath?: string;
 	outputMode?: OutputMode;
 	maxSubagentDepth?: number;
 	workflowStageSubagentGuard?: boolean;
+	workflowSessionMetadata?: SessionWorkflowMetadata;
 	nestedRoute?: NestedRouteInfo;
 	/** Override the agent's default model (format: "provider/id" or just "id") */
 	modelOverride?: string;

package/dist/builtin/subagents/src/shared/types-depth.ts

@@ -2,8 +2,13 @@
  * Recursion-depth guard helpers for nested subagent execution.
  */
 
-import type { ExtensionContext } from "@bastani/atomic";
-import { APP_NAME, getEnvValue, WORKFLOW_STAGE_SUBAGENT_GUARD_ENV } from "@bastani/atomic";
+import type { ExtensionContext, SessionWorkflowMetadata } from "@bastani/atomic";
+import {
+	APP_NAME,
+	getEnvValue,
+	WORKFLOW_SESSION_METADATA_ENV,
+	WORKFLOW_STAGE_SUBAGENT_GUARD_ENV,
+} from "@bastani/atomic";
 import { DEFAULT_SUBAGENT_MAX_DEPTH, MAX_SUBAGENT_NESTING_DEPTH } from "./types-runtime.ts";
 
 const ENV_PREFIX = APP_NAME.toUpperCase();
@@ -39,6 +44,28 @@ export function isWorkflowStageOrchestrationContext(ctx: Pick<ExtensionContext,
 	return ctx.orchestrationContext?.kind === "workflow-stage";
 }
 
+export function workflowSessionMetadataFromContext(
+	ctx: Pick<ExtensionContext, "orchestrationContext">,
+): SessionWorkflowMetadata | undefined {
+	const orchestration = ctx.orchestrationContext;
+	if (orchestration?.kind !== "workflow-stage") return undefined;
+	return {
+		runId: orchestration.workflowRunId,
+		stageId: orchestration.workflowStageId,
+		stageName: orchestration.workflowStageName,
+	};
+}
+
+export function workflowSessionEnv(metadata: SessionWorkflowMetadata | undefined): Record<string, string> {
+	return metadata ? { [WORKFLOW_SESSION_METADATA_ENV]: JSON.stringify(metadata) } : {};
+}
+
+export function workflowSessionEnvFromContext(
+	ctx: Pick<ExtensionContext, "orchestrationContext">,
+): Record<string, string> {
+	return workflowSessionEnv(workflowSessionMetadataFromContext(ctx));
+}
+
 export function resolveWorkflowStageMaxSubagentDepth(
 	ctx: Pick<ExtensionContext, "orchestrationContext">,
 	configMaxDepth?: number,

package/dist/builtin/web-access/CHANGELOG.md

@@ -4,6 +4,19 @@ All notable changes to this project will be documented in this file.
 
 ## [Unreleased]
 
+## [0.9.9-alpha.2] - 2026-07-14
+
+### Changed
+
+- Aligned the web-access extension peer dependency with `@earendil-works/pi-tui` `^0.80.7` as part of the consolidated Pi v0.80.7 dependency update; no web-access source changes were needed.
+- Updated `linkedom` from 0.18.12 to 0.18.13 and refreshed its selector dependency graph.
+
+## [0.9.9-alpha.1] - 2026-07-14
+
+### Changed
+
+- Published a synchronized Atomic 0.9.9-alpha.1 prerelease for the web-access extension; no functional web-access changes were made after 0.9.8.
+
 ## [0.9.8] - 2026-07-12
 
 ### Changed

package/dist/builtin/web-access/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@bastani/web-access",
-  "version": "0.9.8",
+  "version": "0.9.9-alpha.2",
   "private": true,
   "description": "Atomic extension for web search, URL fetching, GitHub repo cloning, PDF/video extraction. Fork of: https://github.com/nicobailon/pi-web-access",
   "contributors": [
@@ -31,7 +31,7 @@
   },
   "peerDependencies": {
     "@bastani/atomic": "*",
-    "@earendil-works/pi-tui": "^0.80.6"
+    "@earendil-works/pi-tui": "^0.80.7"
   },
   "peerDependenciesMeta": {
     "@bastani/atomic": {
@@ -43,7 +43,7 @@
   },
   "dependencies": {
     "@mozilla/readability": "^0.6.0",
-    "linkedom": "^0.18.12",
+    "linkedom": "^0.18.13",
     "p-limit": "^7.3.0",
     "turndown": "^7.2.0",
     "unpdf": "^1.6.2"

package/dist/builtin/web-access/web-search-tool.ts

@@ -1,6 +1,5 @@
-import type { ExtensionAPI } from "@bastani/atomic";
+import { StringEnum, type ExtensionAPI } from "@bastani/atomic";
 import { Text } from "@earendil-works/pi-tui";
-import { StringEnum } from "@earendil-works/pi-ai/compat";
 import { Type } from "typebox";
 import { renderWebSearchResult } from "./result-renderers.js";
 import type { ExtractedContent } from "./extract.js";

package/dist/builtin/workflows/CHANGELOG.md

@@ -6,6 +6,35 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.1.0/),
 
 ## [Unreleased]
 
+## [0.9.9-alpha.2] - 2026-07-14
+
+### Changed
+
+- Aligned the workflows extension peer dependency with `@earendil-works/pi-tui` `^0.80.7` as part of the consolidated Pi v0.80.7 dependency update; no workflow source changes were needed.
+- Updated the runtime `typebox` range to `^1.3.6`.
+
+## [0.9.9-alpha.1] - 2026-07-14
+
+### Changed
+
+- Hardened the shared builtin `goal`/`ralph` prompt contracts against over-implementation drift (observed in eval traces where near-perfect patches lost binary reward to a single invented strictness: returning a read-only mapping proxy where the contract said "dict", marking an optional schema field required, and rejecting duplicate aliases the task's hidden tests expected to be tolerated). The literal objective contract now states that the loud-error preference applies only to error conditions the contract enumerates and that the default for unenumerated behavior is permissive acceptance (never invent a validation error, required field, uniqueness constraint, or rejection the contract does not name); that contract-named types/shapes/formats must be produced exactly, with no defensive substitutes such as read-only proxies, frozen collections, or tuples-for-lists, because consumers may check type identity literally; and that unspecified behavior defaults to preserving input verbatim over normalizing, deduplicating, reordering, or rewriting it.
+- Extended the worker/orchestrator acceptance-matrix contract with rows for literal contract examples (checked character-for-character rather than paraphrased) and for each contract-constrained interface decision (types by identity, required-vs-optional per field, duplicate handling, ordering, raw-vs-normalized text), recording the permissive/preserving default whenever the contract leaves a decision open.
+- Added a shared `CONTRACT_FIDELITY_AUDIT` adversarial divergence pass to the Goal worker and Ralph orchestrator prompts (`<divergence_audit>`): after checks are green and before claiming readiness, re-read each contract clause asking what plausible independent check would fail the implementation, probing the recurring divergence categories — type-identity assertions, optional fields omitted, duplicated/aliased inputs, ordering assumptions, verbatim-vs-normalized text, and any raised error the contract does not enumerate. Forked continuation prompts reference the audit in their established-guidance pointer.
+- Made Goal and Ralph reviewers hunt over-implementation as seriously as gaps via a shared `REVIEWER_OVERIMPLEMENTATION_GUARD`: validation errors, required fields, uniqueness/format constraints, immutability wrappers, or normalization the contract does not require are `required_by_objective` defects, and reviewers must probe at least one contract-permitted input the worker's own tests do not exercise before approving. The independent-verification contract and reviewer action items now include contract-permitted-input and type/shape/text-identity probes alongside the existing boundary/edge/negative probes.
+- Added a shared Intercom coordination protocol to every concurrent builtin Goal and Ralph reviewer prompt: reviewers now check Intercom and discover same-run siblings at review start, communicate validation plans and ownership, serialize conflicting shared-checkout or shared-environment checks, announce starts/completions/releases, share reusable execution evidence, and retain independent patch analysis and verdicts ([#1803](https://github.com/bastani-inc/atomic/issues/1803)).
+
+### Fixed
+
+- Fixed the builtin `open-claude-design` artifact directory fallback to use a per-user OS tmpdir namespace (`open-claude-design-<username>`), preventing `EACCES` failures on shared hosts where another user already owns the plain `<tmpdir>/open-claude-design` directory. The legacy shared path remains a secondary fallback, and the last-resort synthesized path now also uses the per-user namespace so best-effort feedback persistence can actually create it.
+- Prevented the synced Impeccable fixture's nested `git init` from inheriting hook-local Git repository variables and corrupting a linked repository's shared `core.worktree`. Runner-managed reusable worktrees now remap propagated invoking-repository `cwd` values and relative direct outputs into the selected worktree; reject blank, self, nested, foreign, lexical-escape, symlink-escape, and changed cached targets before opening a later session; key cached identity by canonical repository/target across equivalent path and ref spellings; revalidate newly created targets; and expose clearer workflow tool guidance/schema descriptions so natural-language worktree requests cannot be mistaken for runtime configuration. Temporary direct task and parallel worktrees also derive omitted/relative task cwd values from the runner invocation cwd and clean up when startup fails before their workflow callback, while relative outputs are persisted to stable runner-owned artifacts before cleanup and reject parent traversal, child symlink escapes, or a linked trusted artifact root across direct, parallel, and chain modes; blank `chainDir` values no longer bypass reusable-worktree output routing.
+- Fixed the active Workflow Orchestrator graph pane to pan left and right for horizontal trackpad and terminal mouse-wheel events while preserving vertical wheel panning and pane-local input capture ([#1756](https://github.com/bastani-inc/atomic/issues/1756)).
+- Fixed `/workflow resume` so its single globally newest-first, deduplicated picker includes current paused or recoverably failed and durable resumable entries alongside authoritative successful completed workflows. Completed rows use green `✓ completed` styling and open an immutable detail/chat snapshot with transcript follow-up conversation, without durable re-dispatch or workflow side-effect replay. Full IDs take precedence and prefixes resolve across the mixed namespace; completed rows require checkpoints and at least one strictly valid retained conversation, invalid per-stage paths cannot attach chat, repeated inspection refreshes changed authoritative chat handles, and selector mount failures close safely. Existing resumable workflow and ordinary internal-session history behavior remains on the original paths. ([#1532](https://github.com/bastani-inc/atomic/issues/1532))
+- Fixed `/workflow resume` to deduplicate live and durable choices with live-row precedence, then globally sort the combined selector by latest run/stage or durable-update activity, newest first, with deterministic workflow-id tie-breaking independent of source enumeration order ([#1714](https://github.com/bastani-inc/atomic/issues/1714)).
+- Fixed startup and restored-session workflow notices to use the authoritative durable resume catalog's status/progress rules: failed and blocked root workflows are advertised unless explicitly marked `resumable: false`, running and paused workflows require durable progress, nested child workflows and stale cache-only entries are excluded, and legacy direct or payload-wrapped checkpoint entries are parsed correctly.
+- Fixed durable mid-stage workflow resume to refresh pause-adjusted active stage/task duration at repeated session checkpoints, preserve it through file and DBOS hydration, and continue accumulating it across repeated process-boundary resumes without resetting the baseline when concurrent tracked stage calls begin, double-counting earlier pauses, changing replay identity, or re-running completed side effects ([#1713](https://github.com/bastani-inc/atomic/issues/1713)).
+- Fixed incompatible durable workflow records appearing as loadable resume targets by moving file state, DBOS metadata/checkpoint envelopes, and JSONL discovery caches to one shared v2 format contract; exact legacy v1 file and DBOS rows are now suppressed and permanently deleted (including DBOS checkpoint-prefix records), with per-workflow deletion and loadability queries implemented across durable backends and safely isolated from child scopes. Resume selectors, explicit target resolution, completed catalogs, restored-session notices, status/listing state, cache merges, and live resume paths accept only loadable current-format rows; compatibility preparation purges matching restored/live snapshots even when DBOS deletion fails, so failure fallbacks cannot resurrect or dispatch them. Repeated discovery is idempotent, deletion failures stay hidden and retry later, compatible and newly registered runs plus unmarked raw DBOS checkpoint outputs remain supported, and malformed, unavailable, future-version, or unsupported marked-envelope data is conservatively preserved and hidden rather than overwritten, reinterpreted, or broadly deleted.
+- Fixed workflow stage session classification so fresh and fork-context stages persist complete ownership metadata before their transcripts can enter normal resume history, including custom session directories.
+
 ## [0.9.8] - 2026-07-12
 
 ### Changed