@bastani/atomic 0.9.4-alpha.1 → 0.9.4-alpha.3

package/CHANGELOG.md

@@ -2,6 +2,18 @@
 
 ## [Unreleased]
 
+## [0.9.4-alpha.3] - 2026-06-30
+
+### Fixed
+
+- Made release shrinkwrap preparation hermetic by deriving `@bastani/atomic-natives` and generated platform optional package entries from local stamped package metadata with deterministic registry tarball URLs, removing post-native-publish npm metadata lookups that could race registry propagation.
+
+## [0.9.4-alpha.2] - 2026-06-29
+
+### Fixed
+
+- Hardened the coding-agent npm shrinkwrap generator so release publishes resolve the already-published `@bastani/atomic-natives` registry metadata and generated platform optional packages before packing `@bastani/atomic`, while versionless main keeps deterministic placeholder native package entries for shrinkwrap checks.
+
 ## [0.9.4-alpha.1] - 2026-06-29
 
 ### Changed

package/dist/builtin/cursor/CHANGELOG.md

@@ -2,6 +2,12 @@
 
 ## [Unreleased]
 
+## [0.9.4-alpha.3] - 2026-06-30
+
+### Changed
+
+- Published a synchronized Atomic 0.9.4-alpha.3 prerelease for the Cursor provider package; no functional Cursor provider changes were made after 0.9.4-alpha.1.
+
 ## [0.9.4-alpha.1] - 2026-06-29
 
 ### Changed

package/dist/builtin/cursor/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@bastani/cursor",
-  "version": "0.9.4-alpha.1",
+  "version": "0.9.4-alpha.3",
   "private": true,
   "description": "Experimental first-party Atomic extension for Cursor OAuth, model discovery, and streaming provider registration.",
   "contributors": [
@@ -40,7 +40,7 @@
     }
   },
   "dependencies": {
-    "@bastani/atomic-natives": "0.9.4-alpha.1",
+    "@bastani/atomic-natives": "0.9.4-alpha.3",
     "@bufbuild/protobuf": "^2.0.0",
     "@earendil-works/pi-ai": "^0.80.2"
   }

package/dist/builtin/intercom/CHANGELOG.md

@@ -4,6 +4,12 @@ All notable changes to the `pi-intercom` extension will be documented in this fi
 
 ## [Unreleased]
 
+## [0.9.4-alpha.3] - 2026-06-30
+
+### Changed
+
+- Published a synchronized Atomic 0.9.4-alpha.3 prerelease for the intercom extension; no intercom extension changes were made after 0.9.4-alpha.1.
+
 ## [0.9.4-alpha.1] - 2026-06-29
 
 ### Changed

package/dist/builtin/intercom/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@bastani/intercom",
-  "version": "0.9.4-alpha.1",
+  "version": "0.9.4-alpha.3",
   "private": true,
   "description": "Atomic extension providing a private coordination channel between parent and child agent sessions. Fork of: https://github.com/nicobailon/pi-intercom",
   "contributors": [

package/dist/builtin/mcp/CHANGELOG.md

@@ -7,6 +7,12 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ## [Unreleased]
 
+## [0.9.4-alpha.3] - 2026-06-30
+
+### Changed
+
+- Published a synchronized Atomic 0.9.4-alpha.3 prerelease for the MCP extension; no MCP extension changes were made after 0.9.4-alpha.1.
+
 ## [0.9.4-alpha.1] - 2026-06-29
 
 ### Changed

package/dist/builtin/mcp/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@bastani/mcp",
-  "version": "0.9.4-alpha.1",
+  "version": "0.9.4-alpha.3",
   "private": true,
   "description": "Atomic extension that adapts MCP (Model Context Protocol) servers into the coding agent. Fork of: https://github.com/nicobailon/pi-mcp-adapter",
   "contributors": [

package/dist/builtin/subagents/CHANGELOG.md

@@ -2,6 +2,12 @@
 
 ## [Unreleased]
 
+## [0.9.4-alpha.3] - 2026-06-30
+
+### Changed
+
+- Published a synchronized Atomic 0.9.4-alpha.3 prerelease for the subagents extension; no subagents extension changes were made after 0.9.4-alpha.1.
+
 ## [0.9.4-alpha.1] - 2026-06-29
 
 ### Changed

package/dist/builtin/subagents/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@bastani/subagents",
-  "version": "0.9.4-alpha.1",
+  "version": "0.9.4-alpha.3",
   "private": true,
   "description": "Atomic extension for delegating tasks to subagents with chains, parallel execution, and TUI clarification. Fork of: https://github.com/nicobailon/pi-subagents",
   "contributors": [

package/dist/builtin/web-access/CHANGELOG.md

@@ -4,6 +4,12 @@ All notable changes to this project will be documented in this file.
 
 ## [Unreleased]
 
+## [0.9.4-alpha.3] - 2026-06-30
+
+### Changed
+
+- Published a synchronized Atomic 0.9.4-alpha.3 prerelease for the web-access extension; no web-access extension changes were made after 0.9.4-alpha.1.
+
 ## [0.9.4-alpha.1] - 2026-06-29
 
 ### Changed

package/dist/builtin/web-access/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@bastani/web-access",
-  "version": "0.9.4-alpha.1",
+  "version": "0.9.4-alpha.3",
   "private": true,
   "description": "Atomic extension for web search, URL fetching, GitHub repo cloning, PDF/video extraction. Fork of: https://github.com/nicobailon/pi-web-access",
   "contributors": [

package/dist/builtin/workflows/CHANGELOG.md

@@ -6,6 +6,12 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.1.0/),
 
 ## [Unreleased]
 
+## [0.9.4-alpha.3] - 2026-06-30
+
+### Fixed
+
+- Classified generic provider `Connection error.` / `fetch failed` transport outages as explicit workflow transport errors so stage fallback metadata can distinguish them from ordinary provider/model outages while preserving the normal next-model fallback order.
+
 ## [0.9.4-alpha.1] - 2026-06-29
 
 ### Fixed

package/dist/builtin/workflows/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@bastani/workflows",
-  "version": "0.9.4-alpha.1",
+  "version": "0.9.4-alpha.3",
   "private": true,
   "description": "Atomic extension for multi-stage workflow authoring and execution.",
   "contributors": [

package/dist/builtin/workflows/src/runs/shared/model-fallback-failures.ts

@@ -49,6 +49,7 @@ export type ModelFallbackFailureKind =
   | "rate_limit"
   | "provider_unavailable"
   | "network_timeout"
+  | "transport_error"
   | "model_unavailable"
   | "cancelled"
   | "task_failure"
@@ -76,6 +77,7 @@ const FALLBACKABLE_FAILURE_KINDS: ReadonlySet<ModelFallbackFailureKind> = new Se
   "rate_limit",
   "provider_unavailable",
   "network_timeout",
+  "transport_error",
   "model_unavailable",
 ]);
 
@@ -258,6 +260,17 @@ const PROVIDER_REFUSAL_FAILURE_PATTERNS: readonly RegExp[] = [
   /\bprovider\b[^\n]*\brefus(?:e|al|ed|es|ing)?\b[^\n]*\b(?:prompt|request|content|policy|safety)\b/i,
 ];
 
+const TRANSPORT_OUTAGE_FAILURE_PATTERNS: readonly RegExp[] = [
+  /^connection\s+error\.?$/i,
+  /^fetch\s+failed\.?$/i,
+];
+
+function transportOutageKindFromMessage(message: string): ModelFallbackFailureKind | undefined {
+  return TRANSPORT_OUTAGE_FAILURE_PATTERNS.some((pattern) => pattern.test(message.trim()))
+    ? "transport_error"
+    : undefined;
+}
+
 function refusalKindFromMessage(message: string): ModelFallbackFailureKind | undefined {
   if (CANCELLED_FAILURE_PATTERNS.some((pattern) => pattern.test(message))) return "cancelled";
   if (NON_RETRYABLE_FAILURE_PATTERNS.some((pattern) => pattern.test(message))) return "task_failure";
@@ -268,6 +281,8 @@ function refusalKindFromMessage(message: string): ModelFallbackFailureKind | und
 function fallbackKindFromMessage(message: string, name: string | undefined): ModelFallbackFailureKind | undefined {
   const refusalKind = refusalKindFromMessage(message);
   if (refusalKind !== undefined) return refusalKind;
+  const transportOutageKind = transportOutageKindFromMessage(message);
+  if (transportOutageKind !== undefined) return transportOutageKind;
   const nameKind = kindFromCode(name);
   if (nameKind !== undefined) return nameKind;
   if (!RETRYABLE_MODEL_FAILURE_PATTERNS.some((pattern) => pattern.test(message))) return undefined;
@@ -305,6 +320,16 @@ function makeSignal(
   };
 }
 
+function fallbackSignalFromDirectMessage(
+  value: unknown,
+  source: ModelFallbackFailureSource | undefined,
+): ModelFallbackFailureSignal | undefined {
+  const message = directMessageFrom(value);
+  if (message === undefined) return undefined;
+  const kind = fallbackKindFromMessage(message, errorName(value));
+  return kind === undefined ? undefined : makeSignal(kind, value, source);
+}
+
 function fallbackSignalFromMessage(
   value: unknown,
   source: ModelFallbackFailureSource | undefined,
@@ -346,6 +371,9 @@ function structuredSignal(
   const directRefusalSignal = classifyAssistantRefusalSignal(value, source);
   if (directRefusalSignal !== undefined) return directRefusalSignal;
 
+  const directMessageSignal = fallbackSignalFromDirectMessage(value, source);
+  if (directMessageSignal !== undefined) return directMessageSignal;
+
   const codeKind = kindFromCode(codeFrom(value));
   const nameKind = kindFromCode(errorName(value));
   if (codeKind === "cancelled" || nameKind === "cancelled") return makeSignal("cancelled", value, source);

package/docs/development.md

@@ -68,6 +68,16 @@ bun --cwd packages/coding-agent run test -- test/specific.test.ts
 
 The file-length gate scans tracked `.ts`, `.tsx`, `.js`, `.jsx`, `.mjs`, `.cjs`, and `.rs` files via `git ls-files`, falls back to a recursive walk outside Git, and counts physical lines with a no-final-newline correction. Only generated/vendored path globs (`node_modules`, `dist`, `target`, `binaries`, `.git`, `vendor`, minified bundles, and the bundled third-party `packages/workflows/skills/impeccable/**` skill) plus first-five-line generated markers are excluded; there is no grandfather/baseline allowlist for authored files.
 
+## Release shrinkwrap
+
+`@bastani/atomic` ships `packages/coding-agent/npm-shrinkwrap.json` for deterministic package-manager installs. Main stays versionless at `0.0.0`; `scripts/cut-release.ts` stamps the real version in an off-main worktree and regenerates the shrinkwrap there before tagging.
+
+The shrinkwrap generator is hermetic for Atomic-owned packages. It derives `@bastani/atomic-natives` and generated native optional package entries from local package metadata plus deterministic registry tarball URLs, so release publishing does not depend on npm metadata for native packages that were just published.
+
+```bash
+bun run scripts/generate-coding-agent-shrinkwrap.mjs --check
+```
+
 ## Project Structure
 
 ```

package/docs/workflows.md

@@ -1814,7 +1814,7 @@ export default workflow({
 
 For lower-level integrations, `@bastani/workflows` also exports `setupGitWorktree({ gitWorktreeDir, baseBranch, cwd })`, returning `{ worktreeRoot, cwd, repositoryRoot, created }` with the same validation, symlink-preserving path handling, and cwd-preservation behavior used by workflow stages.
 
-`fallbackModels` retries transient provider/model failures with the primary `model` first, then each fallback, then the current Atomic-selected model when available. It is for rate limits, quota/auth/provider outages, unavailable models, network timeouts, and 5xx errors — not workflow-code errors, tool failures, validation failures, or cancellations.
+`fallbackModels` retries transient provider/model failures with the primary `model` first, then each fallback, then the current Atomic-selected model when available. It is for rate limits, quota/auth/provider outages, unavailable models, network timeouts, generic transport errors such as `Connection error.` / `fetch failed`, and 5xx errors — not workflow-code errors, tool failures, validation failures, or cancellations.
 
 When a finished stage's session is reattached for a follow-up (for example a post-completion follow-up, or after the CLI is reloaded), the stage resumes on the model the session last settled on — the one that actually worked — instead of replaying the chain from the primary. If that model fails again with a transient/retryable error, the full chain is retried from the primary.
 

package/npm-shrinkwrap.json

@@ -1,15 +1,15 @@
 {
 	"name": "@bastani/atomic",
-	"version": "0.9.4-alpha.1",
+	"version": "0.9.4-alpha.3",
 	"lockfileVersion": 3,
 	"requires": true,
 	"packages": {
 		"": {
 			"name": "@bastani/atomic",
-			"version": "0.9.4-alpha.1",
+			"version": "0.9.4-alpha.3",
 			"license": "MIT",
 			"dependencies": {
-				"@bastani/atomic-natives": "0.9.4-alpha.1",
+				"@bastani/atomic-natives": "0.9.4-alpha.3",
 				"@bufbuild/protobuf": "^2.0.0",
 				"@earendil-works/pi-agent-core": "^0.80.2",
 				"@earendil-works/pi-ai": "^0.80.2",
@@ -516,17 +516,16 @@
 			}
 		},
 		"node_modules/@bastani/atomic-natives": {
-			"version": "0.9.4-alpha.1",
-			"resolved": "https://registry.npmjs.org/@bastani/atomic-natives/-/atomic-natives-0.9.4-alpha.1.tgz",
-			"integrity": "sha512-+HvxHRJ79/QsbwAqNG1sRCDYcQOmnm2TTIy9c40UaZNpf2IFYZoGCQiILGVtQGn6FumKjV/ATr/bOdOvm+vN6A==",
+			"version": "0.9.4-alpha.3",
+			"resolved": "https://registry.npmjs.org/@bastani/atomic-natives/-/atomic-natives-0.9.4-alpha.3.tgz",
 			"license": "MIT",
 			"optionalDependencies": {
-				"@bastani/atomic-natives-win32-x64-msvc": "0.9.4-alpha.1",
-				"@bastani/atomic-natives-darwin-x64": "0.9.4-alpha.1",
-				"@bastani/atomic-natives-linux-x64-gnu": "0.9.4-alpha.1",
-				"@bastani/atomic-natives-linux-arm64-gnu": "0.9.4-alpha.1",
-				"@bastani/atomic-natives-darwin-arm64": "0.9.4-alpha.1",
-				"@bastani/atomic-natives-win32-arm64-msvc": "0.9.4-alpha.1"
+				"@bastani/atomic-natives-darwin-arm64": "0.9.4-alpha.3",
+				"@bastani/atomic-natives-darwin-x64": "0.9.4-alpha.3",
+				"@bastani/atomic-natives-linux-arm64-gnu": "0.9.4-alpha.3",
+				"@bastani/atomic-natives-linux-x64-gnu": "0.9.4-alpha.3",
+				"@bastani/atomic-natives-win32-arm64-msvc": "0.9.4-alpha.3",
+				"@bastani/atomic-natives-win32-x64-msvc": "0.9.4-alpha.3"
 			},
 			"engines": {
 				"bun": ">=1.3.14",
@@ -534,14 +533,9 @@
 			}
 		},
 		"node_modules/@bastani/atomic-natives-darwin-arm64": {
-			"version": "0.9.4-alpha.1",
-			"resolved": "https://registry.npmjs.org/@bastani/atomic-natives-darwin-arm64/-/atomic-natives-darwin-arm64-0.9.4-alpha.1.tgz",
-			"integrity": "sha512-muIJSapSOiHPwhNlopCIq0pyx/tU/egwB1gXfDiiVoOaqz/TOSsu/qj2sH17Raso92VzUNToa4DxWrhlBsG5jw==",
+			"version": "0.9.4-alpha.3",
+			"resolved": "https://registry.npmjs.org/@bastani/atomic-natives-darwin-arm64/-/atomic-natives-darwin-arm64-0.9.4-alpha.3.tgz",
 			"license": "MIT",
-			"engines": {
-				"bun": ">=1.3.14",
-				"node": ">= 12.22.0 < 13 || >= 14.17.0 < 15 || >= 15.12.0 < 16 || >= 16.0.0"
-			},
 			"os": [
 				"darwin"
 			],
@@ -551,14 +545,9 @@
 			"optional": true
 		},
 		"node_modules/@bastani/atomic-natives-darwin-x64": {
-			"version": "0.9.4-alpha.1",
-			"resolved": "https://registry.npmjs.org/@bastani/atomic-natives-darwin-x64/-/atomic-natives-darwin-x64-0.9.4-alpha.1.tgz",
-			"integrity": "sha512-fJWx9YQR/gbhiSKUk/fRxrh5byPAipxhWSs3kNNxf0xOuHoA4bi/uOKa+sI+SVkOGPF4Sl9PXpHXCRell1jayw==",
+			"version": "0.9.4-alpha.3",
+			"resolved": "https://registry.npmjs.org/@bastani/atomic-natives-darwin-x64/-/atomic-natives-darwin-x64-0.9.4-alpha.3.tgz",
 			"license": "MIT",
-			"engines": {
-				"bun": ">=1.3.14",
-				"node": ">= 12.22.0 < 13 || >= 14.17.0 < 15 || >= 15.12.0 < 16 || >= 16.0.0"
-			},
 			"os": [
 				"darwin"
 			],
@@ -568,14 +557,9 @@
 			"optional": true
 		},
 		"node_modules/@bastani/atomic-natives-linux-arm64-gnu": {
-			"version": "0.9.4-alpha.1",
-			"resolved": "https://registry.npmjs.org/@bastani/atomic-natives-linux-arm64-gnu/-/atomic-natives-linux-arm64-gnu-0.9.4-alpha.1.tgz",
-			"integrity": "sha512-fvztNdmAbBgcQIgfGrG8whxVJHnrmr5T+LyQUu5Cc8KXbalBiCYAKcAreaJLWhS1Q+jX6CIBQ2/vTFGGYMFeMg==",
+			"version": "0.9.4-alpha.3",
+			"resolved": "https://registry.npmjs.org/@bastani/atomic-natives-linux-arm64-gnu/-/atomic-natives-linux-arm64-gnu-0.9.4-alpha.3.tgz",
 			"license": "MIT",
-			"engines": {
-				"bun": ">=1.3.14",
-				"node": ">= 12.22.0 < 13 || >= 14.17.0 < 15 || >= 15.12.0 < 16 || >= 16.0.0"
-			},
 			"os": [
 				"linux"
 			],
@@ -588,14 +572,9 @@
 			"optional": true
 		},
 		"node_modules/@bastani/atomic-natives-linux-x64-gnu": {
-			"version": "0.9.4-alpha.1",
-			"resolved": "https://registry.npmjs.org/@bastani/atomic-natives-linux-x64-gnu/-/atomic-natives-linux-x64-gnu-0.9.4-alpha.1.tgz",
-			"integrity": "sha512-XjSJqi0293AeZj/pUc8zdllk4ykZb74E3sD6B/AuBIDiu4mPBZ/oXPJ0Izb65rXIl8+sx0t4YZil8GSGIhVfvQ==",
+			"version": "0.9.4-alpha.3",
+			"resolved": "https://registry.npmjs.org/@bastani/atomic-natives-linux-x64-gnu/-/atomic-natives-linux-x64-gnu-0.9.4-alpha.3.tgz",
 			"license": "MIT",
-			"engines": {
-				"bun": ">=1.3.14",
-				"node": ">= 12.22.0 < 13 || >= 14.17.0 < 15 || >= 15.12.0 < 16 || >= 16.0.0"
-			},
 			"os": [
 				"linux"
 			],
@@ -608,14 +587,9 @@
 			"optional": true
 		},
 		"node_modules/@bastani/atomic-natives-win32-arm64-msvc": {
-			"version": "0.9.4-alpha.1",
-			"resolved": "https://registry.npmjs.org/@bastani/atomic-natives-win32-arm64-msvc/-/atomic-natives-win32-arm64-msvc-0.9.4-alpha.1.tgz",
-			"integrity": "sha512-jiqdS60fq99Tfp9H7Dj8LyTPz64tfP4yBEW5xUuN66J2uN4TpZKMNbHQ0ffeb91IWAP+B42UailPguvrov/Tvg==",
+			"version": "0.9.4-alpha.3",
+			"resolved": "https://registry.npmjs.org/@bastani/atomic-natives-win32-arm64-msvc/-/atomic-natives-win32-arm64-msvc-0.9.4-alpha.3.tgz",
 			"license": "MIT",
-			"engines": {
-				"bun": ">=1.3.14",
-				"node": ">= 12.22.0 < 13 || >= 14.17.0 < 15 || >= 15.12.0 < 16 || >= 16.0.0"
-			},
 			"os": [
 				"win32"
 			],
@@ -625,14 +599,9 @@
 			"optional": true
 		},
 		"node_modules/@bastani/atomic-natives-win32-x64-msvc": {
-			"version": "0.9.4-alpha.1",
-			"resolved": "https://registry.npmjs.org/@bastani/atomic-natives-win32-x64-msvc/-/atomic-natives-win32-x64-msvc-0.9.4-alpha.1.tgz",
-			"integrity": "sha512-L7nEKNV35pIN1AMNPBH6UmWV0kkM0/KB7wtBPBTildeyyEU2UdwXgLGA8uEqazhgtttJONvjGBF7NySkIz7JFg==",
+			"version": "0.9.4-alpha.3",
+			"resolved": "https://registry.npmjs.org/@bastani/atomic-natives-win32-x64-msvc/-/atomic-natives-win32-x64-msvc-0.9.4-alpha.3.tgz",
 			"license": "MIT",
-			"engines": {
-				"bun": ">=1.3.14",
-				"node": ">= 12.22.0 < 13 || >= 14.17.0 < 15 || >= 15.12.0 < 16 || >= 16.0.0"
-			},
 			"os": [
 				"win32"
 			],

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@bastani/atomic",
-  "version": "0.9.4-alpha.1",
+  "version": "0.9.4-alpha.3",
   "description": "Atomic coding agent CLI with read, bash, edit, write tools and session management",
   "type": "module",
   "atomicConfig": {
@@ -66,11 +66,11 @@
     "docs:check": "bun run scripts/validate-docs-links.ts",
     "verify:workflow-types": "bun run scripts/verify-workflow-sdk-types.ts",
     "test": "vitest --run",
-    "shrinkwrap": "node ../../scripts/generate-coding-agent-shrinkwrap.mjs",
+    "shrinkwrap": "bun run ../../scripts/generate-coding-agent-shrinkwrap.mjs",
     "prepublishOnly": "bun run clean && bun run build && bun run shrinkwrap"
   },
   "dependencies": {
-    "@bastani/atomic-natives": "0.9.4-alpha.1",
+    "@bastani/atomic-natives": "0.9.4-alpha.3",
     "@bufbuild/protobuf": "^2.0.0",
     "@earendil-works/pi-agent-core": "^0.80.2",
     "@earendil-works/pi-ai": "^0.80.2",