@bastani/atomic 0.9.30-alpha.1 → 0.9.30-alpha.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (11) hide show
  1. package/CHANGELOG.md +8 -0
  2. package/dist/builtin/intercom/package.json +1 -1
  3. package/dist/builtin/mcp/package.json +1 -1
  4. package/dist/builtin/subagents/package.json +1 -1
  5. package/dist/builtin/web-access/package.json +1 -1
  6. package/dist/builtin/workflows/package.json +1 -1
  7. package/dist/core/resource-loader-context-files.d.ts.map +1 -1
  8. package/dist/core/resource-loader-context-files.js +10 -6
  9. package/dist/core/resource-loader-context-files.js.map +1 -1
  10. package/npm-shrinkwrap.json +36 -36
  11. package/package.json +3 -3
package/CHANGELOG.md CHANGED
@@ -2,6 +2,14 @@
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  ## [Unreleased]
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+ ## [0.9.30-alpha.2] - 2026-10-09
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+
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+ ### Fixed
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+
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+ - Updated the `music-metadata` dependency used for audio file conversion to 11.16.1, resolving the crafted-file denial-of-service advisories [GHSA-f94x-6692-553q](https://github.com/advisories/GHSA-f94x-6692-553q), [GHSA-5gfj-9q3v-qfp3](https://github.com/advisories/GHSA-5gfj-9q3v-qfp3), and [GHSA-8j4c-6x6g-rq3j](https://github.com/advisories/GHSA-8j4c-6x6g-rq3j).
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+ - Updated the native module's `anyhow` (1.0.104) and `crossbeam-epoch` (0.9.21) crates, resolving [RUSTSEC-2026-0190](https://rustsec.org/advisories/RUSTSEC-2026-0190) and [RUSTSEC-2026-0204](https://rustsec.org/advisories/RUSTSEC-2026-0204).
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+ - Fixed no project context file loading in a git worktree nested inside its main repo when the worktree's `AGENTS.md` is a symlink to the main repo's copy ([#10681](https://github.com/earendil-works/pi/issues/10681))
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+
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  ## [0.9.30-alpha.1] - 2026-10-09
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  ### Breaking Changes
package/dist/builtin/intercom/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@bastani/intercom",
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- "version": "0.9.30-alpha.1",
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+ "version": "0.9.30-alpha.2",
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  "private": true,
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  "description": "Atomic extension providing a private coordination channel between parent and child agent sessions. Fork of: https://github.com/nicobailon/pi-intercom",
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  "contributors": [
package/dist/builtin/mcp/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@bastani/mcp",
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- "version": "0.9.30-alpha.1",
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+ "version": "0.9.30-alpha.2",
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  "private": true,
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  "description": "Atomic's pi-compatible MCP integration for server connections, OAuth, tools, resources, and terminal management.",
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  "contributors": [
package/dist/builtin/subagents/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@bastani/subagents",
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- "version": "0.9.30-alpha.1",
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+ "version": "0.9.30-alpha.2",
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  "private": true,
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  "description": "Atomic extension for delegating tasks to subagents with parallel execution. Fork of: https://github.com/nicobailon/pi-subagents",
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  "contributors": [
package/dist/builtin/web-access/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@bastani/web-access",
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- "version": "0.9.30-alpha.1",
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+ "version": "0.9.30-alpha.2",
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  "private": true,
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  "description": "Atomic extension for web search, URL fetching, GitHub repo cloning, PDF/video extraction. Fork of: https://github.com/nicobailon/pi-web-access",
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  "contributors": [
package/dist/builtin/workflows/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@bastani/workflows",
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- "version": "0.9.30-alpha.1",
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+ "version": "0.9.30-alpha.2",
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  "private": true,
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  "description": "Atomic extension for multi-stage workflow authoring and execution.",
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  "contributors": [
package/dist/core/resource-loader-context-files.d.ts.map CHANGED
@@ -1 +1 @@
1
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1
+ {"version":3,"file":"resource-loader-context-files.d.ts","sourceRoot":"","sources":["../../src/core/resource-loader-context-files.ts"],"names":[],"mappings":"AAQA,wBAAgB,kBAAkB,CAAC,KAAK,EAAE,MAAM,GAAG,SAAS,EAAE,WAAW,EAAE,MAAM,GAAG,MAAM,GAAG,SAAS,CAerG;AAED;;;GAGG;AACH,wBAAgB,+BAA+B,CAAC,KAAK,EAAE,MAAM,GAAG,SAAS,GAAG,MAAM,GAAG,SAAS,CAE7F;AAED,wBAAgB,gCAAgC,CAAC,MAAM,EAAE,SAAS,MAAM,EAAE,GAAG,MAAM,EAAE,CAIpF;AAqBD,wBAAgB,sBAAsB,CAAC,QAAQ,EAAE,MAAM,EAAE,QAAQ,GAAE,CAAC,IAAI,EAAE,MAAM,KAAK,MAAgB,GAAG,MAAM,EAAE,CAS/G;AAsED,wBAAgB,uBAAuB,CAAC,OAAO,EAAE;IAChD,GAAG,EAAE,MAAM,CAAC;IACZ,QAAQ,EAAE,MAAM,CAAC;IACjB,cAAc,CAAC,EAAE,OAAO,CAAC;CACzB,GAAG,KAAK,CAAC;IAAE,IAAI,EAAE,MAAM,CAAC;IAAC,OAAO,EAAE,MAAM,CAAA;CAAE,CAAC,CA2C3C"}
package/dist/core/resource-loader-context-files.js CHANGED
@@ -99,9 +99,11 @@ function isDescendantOf(directory, child) {
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  * occupy the same logical repository scope, so loading both applies that context twice. Returns
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  * undefined when nothing is shadowed, leaving normal ancestor inheritance alone.
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  *
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- * Returned canonicalized (realpath), because `git worktree add` writes the `.git`
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- * file's `gitdir:` target in realpath form while cwd may still be symlinked
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- * (macOS `/tmp` -> `/private/tmp`) or short-named (Windows `RUNNER~1`).
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+ * Returned as the main repo root's real path joined with the selected file name, not
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+ * the file's own real path: `git worktree add` writes the `.git` file's `gitdir:` target
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+ * in realpath form while cwd may still be symlinked (macOS `/tmp` -> `/private/tmp`) or
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+ * short-named (Windows `RUNNER~1`), and a worktree context file that symlinks to the main
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+ * repo's copy would otherwise resolve to the shadowed path itself.
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  */
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  function findShadowedContextFile(cwd) {
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  const gitPaths = findGitPaths(cwd);
@@ -127,9 +129,9 @@ function findShadowedContextFile(cwd) {
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  // the main checkout's selected candidate even when the filenames differ.
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  if (basename(worktreeContextFile.path) === "AGENTS.override.md") {
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  const mainRepoContextFile = loadContextFileFromDir(mainRepoRoot);
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- return mainRepoContextFile ? realPath(mainRepoContextFile.path) : undefined;
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+ return mainRepoContextFile ? join(mainRepoRoot, basename(mainRepoContextFile.path)) : undefined;
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  }
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- return realPath(join(mainRepoRoot, basename(worktreeContextFile.path)));
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+ return join(mainRepoRoot, basename(worktreeContextFile.path));
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  }
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  export function loadProjectContextFiles(options) {
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  const resolvedCwd = resolvePath(options.cwd);
@@ -153,9 +155,11 @@ export function loadProjectContextFiles(options) {
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  const contextFile = loadContextFileFromDir(currentDir);
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  // A nested linked worktree's context file and the main repo's selected copy
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  // occupy one logical repository scope; skip the main repo's copy so it is not loaded twice.
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+ // Compare the directory's real path, not the file's, so a symlinked context file is not
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+ // mistaken for the main repo's copy it points to.
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  const isShadowed = shadowedContextFile !== undefined &&
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  contextFile !== null &&
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- samePath(realPath(contextFile.path), shadowedContextFile);
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+ samePath(join(realPath(currentDir), basename(contextFile.path)), shadowedContextFile);
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  if (contextFile && !isShadowed && !seenPaths.has(contextFile.path)) {
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  ancestorContextFiles.unshift(contextFile);
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  seenPaths.add(contextFile.path);
package/dist/core/resource-loader-context-files.js.map CHANGED
@@ -1 +1 @@
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{ existsSync, readFileSync, realpathSync, statSync } from \"node:fs\";\nimport { basename, dirname, join, sep } from \"node:path\";\nimport chalk from \"chalk\";\nimport { getAgentDir, getAgentDirs } from \"../config.js\";\nimport { canonicalizePath, resolvePath } from \"../utils/paths.ts\";\nimport { stripBom } from \"../utils/text.ts\";\nimport { findGitPaths } from \"./footer-data-provider.ts\";\n\nexport function resolvePromptInput(input: string | undefined, description: string): string | undefined {\n\tif (!input) {\n\t\treturn undefined;\n\t}\n\n\tif (existsSync(input)) {\n\t\ttry {\n\t\t\treturn stripBom(readFileSync(input, \"utf-8\"));\n\t\t} catch (error) {\n\t\t\tconsole.error(chalk.yellow(`Warning: Could not read ${description} file ${input}: ${error}`));\n\t\t\treturn input;\n\t\t}\n\t}\n\n\treturn input;\n}\n\n/**\n * Path of a system-prompt input that is a real file, for startup disclosure.\n * `resolvePromptInput` also accepts literal prompt text, which has no path.\n */\nexport function resolveExistingPromptSourcePath(input: string | undefined): string | undefined {\n\treturn input && existsSync(input) ? resolvePath(input) : undefined;\n}\n\nexport function resolveExistingPromptSourcePaths(inputs: readonly string[]): string[] {\n\treturn inputs\n\t\t.map((input) => resolveExistingPromptSourcePath(input))\n\t\t.filter((path): path is string => path !== undefined);\n}\n\nfunction loadContextFileFromDir(dir: string): { path: string; content: string } | null {\n\tconst candidates = [\"AGENTS.override.md\", \"AGENTS.md\", \"AGENTS.MD\", \"CLAUDE.md\", \"CLAUDE.MD\"];\n\tfor (const filename of candidates) {\n\t\tconst filePath = join(dir, filename);\n\t\tif (existsSync(filePath)) {\n\t\t\ttry {\n\t\t\t\tif (!statSync(filePath).isFile()) continue;\n\t\t\t\treturn {\n\t\t\t\t\tpath: filePath,\n\t\t\t\t\tcontent: stripBom(readFileSync(filePath, \"utf-8\")),\n\t\t\t\t};\n\t\t\t} catch (error) {\n\t\t\t\tconsole.error(chalk.yellow(`Warning: Could not read 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Git records\n * the expanded long form in the `gitdir:` target, so the two spellings of one\n * directory never compared equal and the shadowing guard below silently did\n * nothing on Windows. `realpathSync.native` expands the short component; it is\n * the same pairing `subagents/runs/shared/worktree-root.ts` already relies on.\n */\nfunction realPath(path: string): string {\n\ttry {\n\t\treturn realpathSync.native(path);\n\t} catch {\n\t\treturn canonicalizePath(path);\n\t}\n}\n\n/** Windows compares paths case-insensitively; POSIX does not. */\nfunction samePath(left: string, right: string): boolean {\n\treturn process.platform === \"win32\" ? left.toLowerCase() === right.toLowerCase() : left === right;\n}\n\n/** True when `child` is a strict descendant of `directory`, under the same casing rule. */\nfunction isDescendantOf(directory: string, child: string): boolean {\n\tconst prefix = `${directory}${sep}`;\n\treturn process.platform === \"win32\"\n\t\t? child.toLowerCase().startsWith(prefix.toLowerCase())\n\t\t: child.startsWith(prefix);\n}\n\n/**\n * The main repo's context file that a nested linked worktree's own copy shadows: both\n * occupy the same logical repository scope, so loading both applies that context twice. 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In a bare layout (`proj/.bare` +\n\t// `proj/main`) it is just the directory holding `.bare`, which tracks nothing; a\n\t// submodule's gitdir has no `commondir`, so it lands under `.git/modules`.\n\tif (!samePath(realPath(join(mainRepoRoot, \".git\")), commonGitDir)) return undefined;\n\tconst worktreeContextFile = loadContextFileFromDir(worktreeRoot);\n\tif (!worktreeContextFile) return undefined;\n\t// An override replaces every context candidate in its directory, so it shadows\n\t// the main checkout's selected candidate even when the filenames differ.\n\tif (basename(worktreeContextFile.path) === \"AGENTS.override.md\") {\n\t\tconst mainRepoContextFile = loadContextFileFromDir(mainRepoRoot);\n\t\treturn mainRepoContextFile ? join(mainRepoRoot, basename(mainRepoContextFile.path)) : undefined;\n\t}\n\treturn join(mainRepoRoot, basename(worktreeContextFile.path));\n}\n\nexport function loadProjectContextFiles(options: {\n\tcwd: string;\n\tagentDir: string;\n\tprojectTrusted?: boolean;\n}): Array<{ path: string; content: string }> {\n\tconst resolvedCwd = resolvePath(options.cwd);\n\tconst resolvedAgentDir = resolvePath(options.agentDir);\n\n\tconst contextFiles: Array<{ path: string; content: string }> = [];\n\tconst seenPaths = new Set<string>();\n\n\tconst contextAgentDirs = Array.from(\n\t\tnew Set(resolvedAgentDir === getAgentDir() ? getAgentDirs() : [resolvedAgentDir]),\n\t).reverse();\n\tfor (const agentDir of contextAgentDirs) {\n\t\tconst context = loadContextFileFromDir(agentDir);\n\t\tif (context && !seenPaths.has(context.path)) {\n\t\t\tcontextFiles.push(context);\n\t\t\tseenPaths.add(context.path);\n\t\t}\n\t}\n\n\tconst ancestorContextFiles: Array<{ path: string; content: string }> = [];\n\tif (options.projectTrusted === false) {\n\t\treturn contextFiles;\n\t}\n\n\tconst shadowedContextFile = findShadowedContextFile(resolvedCwd);\n\tfor (const currentDir of getAncestorDirectories(resolvedCwd)) {\n\t\tconst contextFile = loadContextFileFromDir(currentDir);\n\t\t// A nested linked worktree's context file and the main repo's selected copy\n\t\t// occupy one logical repository scope; skip the main repo's copy so it is not loaded twice.\n\t\t// Compare the directory's real path, not the file's, so a symlinked context file is not\n\t\t// mistaken for the main repo's copy it points to.\n\t\tconst isShadowed =\n\t\t\tshadowedContextFile !== undefined &&\n\t\t\tcontextFile !== null &&\n\t\t\tsamePath(join(realPath(currentDir), basename(contextFile.path)), shadowedContextFile);\n\t\tif (contextFile && !isShadowed && !seenPaths.has(contextFile.path)) {\n\t\t\tancestorContextFiles.unshift(contextFile);\n\t\t\tseenPaths.add(contextFile.path);\n\t\t}\n\t}\n\n\tcontextFiles.push(...ancestorContextFiles);\n\n\treturn contextFiles;\n}\n"]}
package/npm-shrinkwrap.json CHANGED
@@ -1,16 +1,16 @@
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@@ -463,8 +463,8 @@
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@@ -475,8 +475,8 @@
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480
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@@ -490,8 +490,8 @@
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@@ -3740,14 +3740,14 @@
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package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@bastani/atomic",
3
- "version": "0.9.30-alpha.1",
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+ "version": "0.9.30-alpha.2",
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  "description": "Atomic coding agent CLI with read, bash, edit, write tools and session management",
5
5
  "type": "module",
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6
  "atomicConfig": {
@@ -82,8 +82,8 @@
82
82
  "prepublishOnly": "bun run clean && bun run build && bun run shrinkwrap"
83
83
  },
84
84
  "dependencies": {
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- "@bastani/atomic-natives": "0.9.30-alpha.1",
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