@bastani/atomic 0.9.27-alpha.1 → 0.9.28-alpha.1

package/docs/extensions/authoring.md

@@ -435,7 +435,7 @@ Atomic's workflow, subagent, Intercom/supervisor, and user-question tools are `m
 
 `direct` and `model-only` tools activate by default. Set `defaultActive: false` to keep a registered tool inactive until you select it with `pi.setActiveTools()`. `namespace: { name, description }` groups related tools. Optional `annotations` carry `readOnlyHint`, `destructiveHint`, `idempotentHint`, and `openWorldHint`; these are advisory hints, not permission checks or verified guarantees.
 
-An active orchestrator may implement `prepareLoadout(loadout)`. The loadout lists `declared`, `callable`, and `registered` tools and provides `getExposure(name)` and `getNamespace(name)`. Return `descriptions` to replace model-facing descriptions or `hiddenDeclarations` to hide declarations while retaining permitted nested access. This changes presentation, not authorization.
+An active orchestrator may implement `prepareLoadout(loadout)`. The loadout lists `declared`, `callable`, and `registered` tools and provides `getExposure(name)`, `getNamespace(name)`, and `getPromptGuidelines(name)`. Return `descriptions` to replace model-facing descriptions or `hiddenDeclarations` to hide declarations while retaining permitted nested access. This changes presentation, not authorization.
 
 ### Fireworks deferred tool loading
 

package/docs/extensions.md

@@ -522,6 +522,8 @@ Moved to [Extension API reference](/extensions/api-reference#pi-on-event-handler
 
 Moved to [Extension API reference](/extensions/api-reference#pi-registertool-definition).
 
+A tool that orchestrates other tools can adjust what the model sees with `prepareLoadout(loadout)`. The hook receives declared, callable, and registered tools, with `getExposure()`, `getNamespace()`, and `getPromptGuidelines()`. Return replacement `descriptions` or `hiddenDeclarations` to hide active tools' declarations while keeping them callable. The default system prompt omits hidden tools from its tool list and rules, and names no tool in the skills hint when the file reader is hidden. The orchestrating tool should present those guidelines itself, as `codemode` does.
+
 #### Built-in tool prompt contributions
 
 Moved to [Extension API reference](/extensions/api-reference#built-in-tool-prompt-contributions).

package/docs/keybindings.md

@@ -51,8 +51,8 @@ Modifier combinations: `ctrl+shift+x`, `alt+ctrl+x`, `ctrl+shift+alt+x`, `ctrl+s
 | `tui.editor.cursorWordRight` | `alt+right`, `ctrl+right`, `alt+f` | Move cursor word right |
 | `tui.editor.historyPrevious` | *(none)* | Select the previous prompt history entry |
 | `tui.editor.historyNext` | *(none)* | Select the next prompt history entry |
-| `tui.editor.cursorLineStart` | `home`, `ctrl+home`, `ctrl+a` | Move to line start |
-| `tui.editor.cursorLineEnd` | `end`, `ctrl+end`, `ctrl+e` | Move to line end |
+| `tui.editor.cursorLineStart` | `home`, `ctrl+a` | Move to line start |
+| `tui.editor.cursorLineEnd` | `end`, `ctrl+e` | Move to line end |
 | `tui.editor.jumpForward` | `ctrl+]` | Jump forward to character |
 | `tui.editor.jumpBackward` | `ctrl+alt+]` | Jump backward to character |
 | `tui.editor.pageUp` | `pageUp`, `ctrl+pageUp` | Scroll up by page |
@@ -111,21 +111,21 @@ Hold Alt while using the mouse wheel to scroll five times as far in fullscreen m
 
 Drag with the primary button to select characters, double-click for a word or path, and triple-click for a line. Changing focus or clicking elsewhere clears the selection.
 
-While the main editor has focus, fullscreen transcript bindings take precedence. Unmodified navigation keys control the transcript; their `ctrl` variants control the editor.
+While the main editor has focus, fullscreen transcript bindings take precedence. `home` and `end` stay with the editor; `ctrl+home` and `ctrl+end` jump to the transcript top and bottom. `pageUp` and `pageDown` control the transcript, while their `ctrl` variants control the editor.
 
 | Key | Editor action | Fullscreen action |
 |-----|---------------|------------------|
-| `home`, `end` | Editor | Transcript |
-| `ctrl+home`, `ctrl+end` | Editor | Editor |
+| `home`, `end` | Editor | Editor |
+| `ctrl+home`, `ctrl+end` | *(none)* | Transcript |
 | `pageUp`, `pageDown` | Editor | Transcript |
 | `ctrl+pageUp`, `ctrl+pageDown` | Editor | Editor |
 
 This routing remains configurable through the ordinary action bindings. For example, `"tui.altScreen.pageUp": "ctrl+pageUp"` makes `pageUp` control the editor and `ctrl+pageUp` control the transcript in fullscreen mode. Bind `tui.altScreen.halfPageUp` and `tui.altScreen.halfPageDown` for half-page steps, or `tui.altScreen.lineUp` and `tui.altScreen.lineDown` for single-line steps, while keeping the full-page bindings. Setting `"tui.altScreen.pageUp": []` disables that transcript shortcut entirely. User bindings replace the defaults for that action.
 A focused custom component may consume viewport keys and mouse input before the transcript. Extension authors should follow the [input handling contract](/extensions/ui#custom-components).
 
-The blocking `ask_user_question` dialog is a bottom-pinned overlay. Opening it does not shrink the transcript viewport or change the page step. `pageUp`, `pageDown`, `home`, `end`, and the wheel still reach every scrollback line, including the newest ones, in the visible strip above the dialog.
+The blocking `ask_user_question` dialog is a bottom-pinned overlay. Opening it does not shrink the transcript viewport or change the page step. `pageUp`, `pageDown`, `ctrl+home`, `ctrl+end`, and the wheel still reach every scrollback line, including the newest ones, in the visible strip above the dialog.
 
-These transcript actions also work while Notes is open. Notes keeps ordinary text and edit actions, including the default `ctrl+home` and `ctrl+end`. A key moves the transcript instead only when configured for a `tui.altScreen.*` action.
+These transcript actions also work while Notes is open. Notes keeps ordinary text and edit actions, including the default `home` and `end`. A key moves the transcript instead only when configured for a `tui.altScreen.*` action.
 
 On short terminals, the dialog is bounded to preserve that visible strip. The active questionnaire row stays visible as you move through single-select and multi-select choices, Next, Submit, Cancel, and inline inputs. The dialog keeps its own arrow, `enter`, `tab`, `space`, `esc`, click, and selection input.
 
@@ -139,8 +139,8 @@ On short terminals, the dialog is bounded to preserve that visible strip. The ac
 | `tui.altScreen.lineDown` | *(none)* | Scroll the transcript down by one line |
 | `tui.altScreen.previousPrompt` | `ctrl+shift+up` | Jump to the previous marked message |
 | `tui.altScreen.nextPrompt` | `ctrl+shift+down` | Jump to the next marked message |
-| `tui.altScreen.top` | `home` | Scroll to the beginning of the transcript |
-| `tui.altScreen.bottom` | `end` | Scroll to the transcript end and follow new output |
+| `tui.altScreen.top` | `ctrl+home` | Scroll to the beginning of the transcript |
+| `tui.altScreen.bottom` | `ctrl+end` | Scroll to the transcript end and follow new output |
 
 Atomic does not ship a find-in-transcript shortcut. The four `tui.altScreen.search*` actions remain in the keybinding table so an existing `keybindings.json` still validates, but they have no default keys and do nothing.
 

package/docs/mcp-servers.md

@@ -145,6 +145,10 @@ Tools are named `mcp__<server>__<tool>`, with punctuation replaced by `_`. Names
 
 Codemode and deferred tools can be reached through either indirect mechanism. Server summaries appear in the `mcp_servers` system prompt section. Scripts can read instructions and tool names with `describeNamespace("mcp__github")`.
 
+`--tools` keeps MCP tools unless an entry starts with `mcp__`. For example, `atomic --tools read,codemode` can still call non-hidden MCP tools with codemode or deferred exposure from scripts, but unmatched MCP tools are not declared directly. Unmatched direct-exposure tools remain registered but inactive. Include `tool_search` to load unmatched tools with non-direct exposure. To restrict the server tools, use `atomic --tools read,codemode,'mcp__docs__*'`. `--exclude-tools` accepts the same `*` patterns and also applies to MCP resource tools.
+
+`--no-mcp` disables built-in MCP support for one run. No built-in servers connect, MCP tools load, or `/mcp` command registers. A replacement extension is unaffected.
+
 Codemode receives the complete MCP result, including `content`, `structuredContent`, and `isError`. Text over 20 KB is shortened for the model, with the complete text saved to a temporary file named in the result. Every MCP call passes through Atomic's tool pipeline, including permission hooks.
 
 ## Use resources

package/docs/providers.md

@@ -209,7 +209,7 @@ Catalog failures preserve the last usable models for each provider. See [catalog
 | ---------------------------------- | ------------------------------------------------------------------------- | ---------------------------- |
 | Anthropic                          | `ANTHROPIC_API_KEY` or bearer-only `ANTHROPIC_AUTH_TOKEN`                 | `anthropic`                  |
 | Ant Ling                           | `ANT_LING_API_KEY`                                                        | `ant-ling`                   |
-| Azure OpenAI Responses             | `AZURE_OPENAI_API_KEY`                                                    | `azure-openai-responses`     |
+| Azure                              | `AZURE_OPENAI_API_KEY`                                                    | `azure`                      |
 | OpenAI                             | `OPENAI_API_KEY`                                                          | `openai`                     |
 | DeepSeek                           | `DEEPSEEK_API_KEY`                                                        | `deepseek`                   |
 | NVIDIA NIM                         | `NVIDIA_API_KEY`                                                          | `nvidia`                     |
@@ -344,12 +344,25 @@ atomic --provider nvidia --model nvidia/nemotron-3-ultra-550b-a55b
 
 Use `--list-models` or `/model` to check the current catalog and replace a missing saved model. A catalog listing does not verify account access or serving availability.
 
-### Azure OpenAI
+<a id="azure-openai" />
+
+### Azure
+
+Use the `azure` provider for OpenAI Responses models and Azure Foundry Chat Completions, including `azure/deepseek-v4-pro`:
+
+```bash
+atomic --model azure/deepseek-v4-pro:high
+```
+
+DeepSeek V4 Pro supports `low`, `medium`, and `high` reasoning effort. Azure OpenAI models keep the `azure-openai-responses` API ID; Chat Completions models use `openai-completions`.
+
+Custom Azure deployments in `models.json` or extension registrations default to the Responses API when no API is specified and the model ID is not in the catalog. Set `api: "openai-completions"` at the provider or model level to use Chat Completions.
 
 ```bash
 export AZURE_OPENAI_API_KEY=...
 export AZURE_OPENAI_BASE_URL=https://your-resource.openai.azure.com
 # also supported: https://your-resource.cognitiveservices.azure.com
+# Azure Foundry endpoints such as https://your-resource.services.ai.azure.com are supported too
 # root endpoints are auto-normalized to /openai/v1
 # or use resource name instead of base URL
 export AZURE_OPENAI_RESOURCE_NAME=your-resource
@@ -359,6 +372,12 @@ export AZURE_OPENAI_API_VERSION=2024-02-01
 export AZURE_OPENAI_DEPLOYMENT_NAME_MAP=gpt-4=my-gpt4,gpt-4o=my-gpt4o
 ```
 
+`AZURE_OPENAI_API_VERSION` configures Responses requests. Chat Completions uses the normalized `/openai/v1` endpoint.
+
+Deployment names default to model IDs. Set `AZURE_OPENAI_DEPLOYMENT_NAME_MAP` when your deployments have different names; it applies to both APIs without changing the model ID shown in sessions.
+
+The former provider name `azure-openai-responses` remains accepted in model selections, saved sessions, and SDK lookups. Startup renames that provider in `auth.json`, `settings.json`, and `models.json`, including legacy Pi configuration paths. Existing `azure` entries win on collisions. Project configuration is migrated only after the project is trusted; session files are not rewritten. Use `azure` in new configuration.
+
 ### Amazon Bedrock
 
 ```bash

package/docs/reference/cli.md

@@ -144,15 +144,21 @@ When a print-mode turn correctly finishes by calling an opt-in terminating struc
 
 | Option | Description |
 |--------|-------------|
-| `--tools <list>`, `-t <list>` | Allowlist specific coding, extension, and custom tools, including Intercom |
-| `--exclude-tools <list>`, `-xt <list>` | Exclude specific coding, extension, and custom tools, including Intercom |
+| `--tools <list>`, `-t <list>` | Allowlist tool names or `*` patterns; keeps MCP tools unless an entry starts with `mcp__` |
+| `--exclude-tools <list>`, `-xt <list>` | Exclude tool names or `*` patterns, including MCP tools and Intercom |
 | `--no-builtin-tools`, `-nbt` | Disable built-in tools but keep extension/custom tools enabled |
 | `--no-tools`, `-nt` | Disable every tool, including Intercom, even with `--tools` |
 
-Default built-in tools: `read`, `bash`, `kill`, `edit`, `write`, `find`, `search`, `ask_user_question`, `todo`, plus `powershell` on native Windows when a PowerShell executable is available. `ls` remains available but is not a default. `defaultTools` selects initial coding tools without narrowing extension/custom tools. `--tools` selects an explicit allowlist; `--exclude-tools` subtracts from it. `--no-builtin-tools` suppresses coding defaults when no allowlist is given. `--no-tools` overrides all selection. To retain Intercom with an allowlist, include `intercom` explicitly.
+Default built-in tools: `read`, `bash`, `kill`, `edit`, `write`, `find`, `search`, `ask_user_question`, `todo`, plus `powershell` on native Windows when a PowerShell executable is available. `ls` remains available but is not a default. `defaultTools` selects initial coding tools without narrowing extension/custom tools. `--tools` selects an explicit allowlist; `--exclude-tools` subtracts from it. `--no-builtin-tools` suppresses coding defaults when no allowlist is given. The bundled Intercom extension remains loaded with `--no-extensions`, but its tool follows the allowlist, exclusions, and `--no-tools` like other extension tools.
 
 To add opt-in [codemode](/tools#codemode) or [tool search](/tools#tool_search) alongside defaults, use `"defaultTools": ["+codemode", "+tool_search"]` in settings. With `--tools`, include their names and every other tool you want available.
 
+### MCP tools
+
+`--tools read,codemode` keeps non-hidden MCP tools with codemode or deferred exposure callable from codemode scripts. MCP tools unmatched by the allowlist are not declared directly, regardless of exposure. Unmatched direct-exposure tools remain registered but inactive. Only an enabled `tool_search` can load unmatched tools with non-direct exposure.
+
+An entry starting with `mcp__` filters MCP tools too. For example, `atomic --tools read,codemode,'mcp__docs__*'` keeps only tools from the `docs` server. MCP resource tools also count as MCP tools. Exclusions apply to both server and resource tools. Use `--no-mcp` to disable built-in MCP connections and resources entirely.
+
 ## Project Trust Options
 
 | Option | Description |
@@ -168,6 +174,7 @@ Project trust gates `.atomic`/legacy `.pi` project resources, project package se
 |--------|-------------|
 | `-e`, `--extension <source>` | Load an extension from path, npm, or git; repeatable |
 | `--no-extensions`, `-ne` | Disable optional extension discovery; mandatory bundled Intercom remains loaded |
+| `--no-mcp` | Disable built-in MCP support for this run, even when explicitly enabled; replacement extensions are unaffected |
 | `--skill <path>` | Load a skill; repeatable |
 | `--no-skills`, `-ns` | Disable skill discovery |
 | `--prompt-template <path>` | Load a prompt template; repeatable |

package/docs/workflows/api-reference.md

@@ -1174,7 +1174,9 @@ Programmatic `run(...)` returns this type. `exited` identifies `ctx.exit(...)` t
 
 `@bastani/atomic/workflows` is Atomic's published workflow SDK. Import `workflow` from that specifier, import `Type` from `typebox`, and export the definition returned by `workflow({...})`. Workflow helpers may also import the host TypeBox runtime subpaths `typebox/compile` and `typebox/value`; the legacy `@sinclair/typebox` root and matching subpaths remain supported. Keep runtime helpers such as widget factories and shared utilities in a subdirectory outside the top-level discovery scan, such as `.atomic/workflows/lib/`; see [Workflow Locations](/workflows/operations#workflow-locations).
 
-Package authors list both `@bastani/atomic` and `typebox` in `peerDependencies`. The `@bastani/atomic` package publishes compiled JavaScript and declarations for `@bastani/atomic/workflows`, `@bastani/atomic/workflows/builtin`, and each `@bastani/atomic/workflows/builtin/*` module. TypeScript resolves those exports directly under `moduleResolution: NodeNext`. When Atomic executes a workflow file or an imported helper, its runtime loader resolves the workflow SDK and supported TypeBox aliases to the same in-memory host modules. It intentionally does not expose extension-only host modules such as the agent core, UI, provider transport, or lockfile implementation.
+Package authors list both `@bastani/atomic` and `typebox` in `peerDependencies`. The `@bastani/atomic` package publishes compiled JavaScript and declarations for `@bastani/atomic/workflows`, `@bastani/atomic/workflows/builtin`, and each `@bastani/atomic/workflows/builtin/*` module. TypeScript resolves those exports directly under `moduleResolution: NodeNext`. When Atomic executes a workflow file or an imported helper, its runtime loader resolves the workflow SDK and supported TypeBox aliases to the same in-memory host modules.
+
+The loader also shares the host's modules for the exact specifiers `@bastani/atomic`, `@bastani/pi-ai`, and `@bastani/pi-ai/providers/all`. These exceptions expose Atomic's public root API and the AI compatibility API and provider transports. The host's versions take precedence over project-local copies, including in standalone-binary installs without project packages. Workflow files and relative imports still refresh on reload. Other deep subpaths resolve from disk. The workflow loader does not share the extension loader's remaining host aliases, including the separate agent-core and UI packages, other AI subpaths, and `proper-lockfile`. Older or alternative hosts without [`getWorkflowHostModules()`](/extensions/api-reference#pi-getworkflowhostmodules) retain filesystem resolution for the three specifiers.
 
 ```ts
 import { workflow } from "@bastani/atomic/workflows";

package/docs/workflows/authoring.md

@@ -716,12 +716,16 @@ A `verified` result is cached durably, so a resumed run does not click again. A
 
 Workflow stages run chat language models. For a schema-backed decision, use the stage's `schema` and `structured_output` tool. It resolves an exact chat or registered classifier ID through the stage model registry and falls back on a classifier runtime failure. The direct `@bastani/pi-ai` examples below are for cases that need the classifier's probabilities or image generation from workflow TypeScript inside `ctx.tool(name, args, fn, { timeoutMs })`. Those calls are durable, replayable nodes. `model: "auto"` selects only chat language models for stage execution; `routerModel` may select a classifier for routing, but a classifier never executes a chat stage.
 
-Discovery loads a workflow file with the project that owns it as the module root. The host provides `@bastani/atomic/workflows` and `typebox`; other imports, including `@bastani/atomic` for `AuthStorage`, resolve from that project's `node_modules` in npm and standalone-binary installs alike. Install both libraries next to the workflow at the version `atomic --version` prints, because older releases have no `classify()` or `generateImages()`:
+Atomic provides `@bastani/atomic/workflows`, `typebox`, and the exact imports `@bastani/atomic`, `@bastani/pi-ai`, and `@bastani/pi-ai/providers/all` to workflow files. The latter three use the running CLI's module instances and version, including `AuthStorage`. These examples need no project-local package installation, in npm or standalone-binary installs. A project copy does not override these host-provided imports.
+
+For editor type checking, install the packages as dev dependencies at the version `atomic --version` prints. Atomic still runs these imports from the CLI, not from the project copy:
 
 ```sh
 npm install --save-dev @bastani/atomic@"$(atomic --version)" @bastani/pi-ai@"$(atomic --version)"
 ```
 
+Other imports, including unlisted deep package subpaths, still resolve from the owning project's `node_modules`. Install those dependencies next to the workflow. `/workflow reload` reloads workflow files and their relative imports, but does not replace the shared host modules; restart Atomic to use a different host version.
+
 Pass `AuthStorage.create()` to `builtinModels()` so classifier and image requests use credentials saved by Atomic's `/login` flows in `auth.json`; this is the recommended default for workflows running inside Atomic. Ambient provider environment variables such as `TYPESAFE_API_KEY` and `OPENROUTER_API_KEY` continue to work. Never read, print, or pass credential values in workflow state, prompts, or artifacts. Both operations resolve instead of throwing: check `stopReason === "stop"` before using a result, and forward the tool's `signal` so a quit or targeted abort cancels the request.
 
 #### Classify a request before choosing a stage
@@ -777,7 +781,7 @@ export default workflow({
 });
 ```
 
-The cached `{ choice, confidence }` is what a resumed run replays; the classifier is not asked again. For a consequential action, add policy checks or `ctx.ui.confirm(...)` before the side effect. Without the extra install, a schema-backed stage or task (`ctx.task(name, { schema, prompt })`, as the `classify-and-act` builtin does) can also make a validated decision. Its `structured_output` call can name a registered classifier or omit `model` and use the current chat model. A classifier probability is available only from a direct `classify()` call like the example above; a chat result does not supply one.
+The cached `{ choice, confidence }` is what a resumed run replays; the classifier is not asked again. For a consequential action, add policy checks or `ctx.ui.confirm(...)` before the side effect. A schema-backed stage or task (`ctx.task(name, { schema, prompt })`, as the `classify-and-act` builtin does) can also make a validated decision. Its `structured_output` call can name a registered classifier or omit `model` and use the current chat model. A classifier probability is available only from a direct `classify()` call like the example above; a chat result does not supply one.
 
 #### Generate an image artifact in a durable tool step
 

package/npm-shrinkwrap.json

@@ -1,24 +1,24 @@
 {
 	"name": "@bastani/atomic",
-	"version": "0.9.27-alpha.1",
+	"version": "0.9.28-alpha.1",
 	"lockfileVersion": 3,
 	"requires": true,
 	"packages": {
 		"": {
 			"name": "@bastani/atomic",
-			"version": "0.9.27-alpha.1",
+			"version": "0.9.28-alpha.1",
 			"license": "MIT",
 			"dependencies": {
-				"@bastani/atomic-natives": "0.9.27-alpha.1",
-				"@bastani/pi-ai": "0.9.27-alpha.1",
+				"@bastani/atomic-natives": "0.9.28-alpha.1",
+				"@bastani/pi-ai": "0.9.28-alpha.1",
 				"@dbos-inc/dbos-sdk": "4.25.14",
-				"@earendil-works/pi-agent-core": "1.0.2",
-				"@earendil-works/pi-client": "1.0.2",
-				"@earendil-works/pi-codemode": "1.0.2",
-				"@earendil-works/pi-protocol": "1.0.2",
-				"@earendil-works/pi-tui": "1.0.2",
+				"@earendil-works/pi-agent-core": "1.0.4",
+				"@earendil-works/pi-client": "1.0.4",
+				"@earendil-works/pi-codemode": "1.0.4",
+				"@earendil-works/pi-protocol": "1.0.4",
+				"@earendil-works/pi-tui": "1.0.4",
 				"@modelcontextprotocol/ext-apps": "^1.7.5",
-				"@modelcontextprotocol/sdk": "1.30.0",
+				"@modelcontextprotocol/sdk": "1.32.1",
 				"@mozilla/readability": "^0.6.0",
 				"@silvia-odwyer/photon-node": "0.3.4",
 				"@typesafe-ai/sdk": "0.6.0",
@@ -432,18 +432,18 @@
 			}
 		},
 		"node_modules/@bastani/atomic-natives": {
-			"version": "0.9.27-alpha.1",
-			"resolved": "https://registry.npmjs.org/@bastani/atomic-natives/-/atomic-natives-0.9.27-alpha.1.tgz",
+			"version": "0.9.28-alpha.1",
+			"resolved": "https://registry.npmjs.org/@bastani/atomic-natives/-/atomic-natives-0.9.28-alpha.1.tgz",
 			"license": "MIT",
 			"optionalDependencies": {
-				"@bastani/atomic-natives-darwin-arm64": "0.9.27-alpha.1",
-				"@bastani/atomic-natives-darwin-x64": "0.9.27-alpha.1",
-				"@bastani/atomic-natives-linux-arm64-gnu": "0.9.27-alpha.1",
-				"@bastani/atomic-natives-linux-arm64-musl": "0.9.27-alpha.1",
-				"@bastani/atomic-natives-linux-x64-gnu": "0.9.27-alpha.1",
-				"@bastani/atomic-natives-linux-x64-musl": "0.9.27-alpha.1",
-				"@bastani/atomic-natives-win32-arm64-msvc": "0.9.27-alpha.1",
-				"@bastani/atomic-natives-win32-x64-msvc": "0.9.27-alpha.1"
+				"@bastani/atomic-natives-darwin-arm64": "0.9.28-alpha.1",
+				"@bastani/atomic-natives-darwin-x64": "0.9.28-alpha.1",
+				"@bastani/atomic-natives-linux-arm64-gnu": "0.9.28-alpha.1",
+				"@bastani/atomic-natives-linux-arm64-musl": "0.9.28-alpha.1",
+				"@bastani/atomic-natives-linux-x64-gnu": "0.9.28-alpha.1",
+				"@bastani/atomic-natives-linux-x64-musl": "0.9.28-alpha.1",
+				"@bastani/atomic-natives-win32-arm64-msvc": "0.9.28-alpha.1",
+				"@bastani/atomic-natives-win32-x64-msvc": "0.9.28-alpha.1"
 			},
 			"engines": {
 				"bun": ">=1.4.2",
@@ -451,8 +451,8 @@
 			}
 		},
 		"node_modules/@bastani/atomic-natives-darwin-arm64": {
-			"version": "0.9.27-alpha.1",
-			"resolved": "https://registry.npmjs.org/@bastani/atomic-natives-darwin-arm64/-/atomic-natives-darwin-arm64-0.9.27-alpha.1.tgz",
+			"version": "0.9.28-alpha.1",
+			"resolved": "https://registry.npmjs.org/@bastani/atomic-natives-darwin-arm64/-/atomic-natives-darwin-arm64-0.9.28-alpha.1.tgz",
 			"license": "MIT",
 			"os": [
 				"darwin"
@@ -463,8 +463,8 @@
 			"optional": true
 		},
 		"node_modules/@bastani/atomic-natives-darwin-x64": {
-			"version": "0.9.27-alpha.1",
-			"resolved": "https://registry.npmjs.org/@bastani/atomic-natives-darwin-x64/-/atomic-natives-darwin-x64-0.9.27-alpha.1.tgz",
+			"version": "0.9.28-alpha.1",
+			"resolved": "https://registry.npmjs.org/@bastani/atomic-natives-darwin-x64/-/atomic-natives-darwin-x64-0.9.28-alpha.1.tgz",
 			"license": "MIT",
 			"os": [
 				"darwin"
@@ -475,8 +475,8 @@
 			"optional": true
 		},
 		"node_modules/@bastani/atomic-natives-linux-arm64-gnu": {
-			"version": "0.9.27-alpha.1",
-			"resolved": "https://registry.npmjs.org/@bastani/atomic-natives-linux-arm64-gnu/-/atomic-natives-linux-arm64-gnu-0.9.27-alpha.1.tgz",
+			"version": "0.9.28-alpha.1",
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+			"version": "0.9.28-alpha.1",
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@@ -559,13 +559,13 @@
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-			"resolved": "https://registry.npmjs.org/@bastani/pi-ai/-/pi-ai-0.9.27-alpha.1.tgz",
+			"version": "0.9.28-alpha.1",
+			"resolved": "https://registry.npmjs.org/@bastani/pi-ai/-/pi-ai-0.9.28-alpha.1.tgz",
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-				"@earendil-works/pi-telemetry": "1.0.2",
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@@ -738,22 +738,22 @@
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@@ -763,12 +763,12 @@
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+			"resolved": "https://registry.npmjs.org/@earendil-works/pi-protocol/-/pi-protocol-1.0.4.tgz",
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@@ -776,18 +776,18 @@
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+			"resolved": "https://registry.npmjs.org/@earendil-works/pi-tui/-/pi-tui-1.0.4.tgz",
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@@ -1600,9 +1600,9 @@
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@@ -4242,9 +4242,9 @@
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@@ -4252,6 +4252,10 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@bastani/atomic",
-  "version": "0.9.27-alpha.1",
+  "version": "0.9.28-alpha.1",
   "description": "Atomic coding agent CLI with read, bash, edit, write tools and session management",
   "type": "module",
   "atomicConfig": {
@@ -80,16 +80,16 @@
     "prepublishOnly": "bun run clean && bun run build && bun run shrinkwrap"
   },
   "dependencies": {
-    "@bastani/atomic-natives": "0.9.27-alpha.1",
-    "@bastani/pi-ai": "0.9.27-alpha.1",
+    "@bastani/atomic-natives": "0.9.28-alpha.1",
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-    "@earendil-works/pi-protocol": "1.0.2",
-    "@earendil-works/pi-tui": "1.0.2",
+    "@earendil-works/pi-agent-core": "1.0.4",
+    "@earendil-works/pi-client": "1.0.4",
+    "@earendil-works/pi-codemode": "1.0.4",
+    "@earendil-works/pi-protocol": "1.0.4",
+    "@earendil-works/pi-tui": "1.0.4",
     "@modelcontextprotocol/ext-apps": "^1.7.5",
-    "@modelcontextprotocol/sdk": "1.30.0",
+    "@modelcontextprotocol/sdk": "1.32.1",
     "@mozilla/readability": "^0.6.0",
     "@silvia-odwyer/photon-node": "0.3.4",
     "@typesafe-ai/sdk": "0.6.0",