@bastani/atomic 0.9.26-alpha.2 → 0.9.26-alpha.4

package/CHANGELOG.md

@@ -2,6 +2,24 @@
 
 ## [Unreleased]
 
+## [0.9.26-alpha.3] - 2026-10-03
+
+### Added
+
+- OAuth sign-in screens now show a copy shortcut for the sign-in URL, including `/mcp login`. Use Ctrl+X or configure `app.auth.copyUrl`; existing message and workflow shortcuts are unchanged.
+- Added project overrides for user-level MCP servers: a `.atomic/mcp.json` entry without `command`, `url`, or `type` sets only `enabled`, `exposure`, and `toolExposure` of the user-level server, and `/mcp` can enable or disable a server for the current project ([#10277](https://github.com/earendil-works/pi/issues/10277)).
+- Added Cloudflare's Clef and Clef Flash classifier models to `cloudflare-workers-ai`, usable from codemode scripts and extensions ([#10316](https://github.com/earendil-works/pi/pull/10316) by [@ndisidore](https://github.com/ndisidore), [#10322](https://github.com/earendil-works/pi/pull/10322) by [@RealAlexandreAI](https://github.com/RealAlexandreAI)).
+
+### Fixed
+
+- Empty comma-separated entries in `--models` no longer add unintended models to the cycle ([#10334](https://github.com/earendil-works/pi/issues/10334)).
+- Pinned `brace-expansion` to 5.0.12 so installations use the patched dependency ([#10288](https://github.com/earendil-works/pi/issues/10288)).
+- MCP OAuth sign-in now rejects pasted redirect URLs whose origin or path differs from the current sign-in's redirect URI.
+
+### Removed
+
+- Removed the daxnuts easter egg shown when selecting `opencode/kimi-k2.5`.
+
 ## [0.9.26-alpha.2] - 2026-10-02
 
 ### Added

package/dist/builtin/intercom/CHANGELOG.md

@@ -4,6 +4,12 @@ All notable changes to the `pi-intercom` extension will be documented in this fi
 
 ## [Unreleased]
 
+## [0.9.26-alpha.4] - 2026-10-02
+
+### Fixed
+
+- Fixed sticky workflow messages disappearing during stage startup, and added per-stage delivery and skip results to `intercom list` so retained future-message counts cannot be mistaken for receipt by every stage ([#3406](https://github.com/bastani-inc/atomic/issues/3406)).
+
 ## [0.9.20] - 2026-09-24
 
 ### Added

package/dist/builtin/intercom/broker/broker.ts

@@ -232,7 +232,13 @@ function isWorkflowPossibleStageAnnouncements(
 				((groupRootRunId !== undefined && groupRootRunId === parsed.rootRunId) || runId === parsed.rootRunId) &&
 				typeof announcement.queuedCount === "number" &&
 				Number.isInteger(announcement.queuedCount) &&
-				announcement.queuedCount >= 0
+				announcement.queuedCount >= 0 &&
+				(announcement.deliveryOnly === undefined || announcement.deliveryOnly === true) &&
+				(announcement.deliveryStates === undefined || (Array.isArray(announcement.deliveryStates) && announcement.deliveryStates.every((delivery) =>
+					delivery !== null && typeof delivery === "object" &&
+					typeof delivery.messageId === "string" && typeof delivery.runId === "string" &&
+					typeof delivery.stageId === "string" && typeof delivery.state === "string" &&
+					typeof delivery.reason === "string" && (delivery.sessionId === undefined || typeof delivery.sessionId === "string"))))
 			);
 		})
 	);
@@ -545,6 +551,8 @@ class IntercomBroker {
 					runId,
 					target: row.target,
 					queuedCount: row.queuedCount,
+					...(row.deliveryStates === undefined ? {} : { deliveryStates: row.deliveryStates }),
+					...(row.deliveryOnly === undefined ? {} : { deliveryOnly: row.deliveryOnly }),
 					group: roster.group,
 				});
 			}

package/dist/builtin/intercom/broker/spawn.ts

@@ -406,6 +406,8 @@ function checkSocketConnectable(): Promise<boolean> {
       resolve(isConnected);
     };
     const onConnect = () => {
+      // end() starts a half-close; a reset can still arrive before close. Keep a handler until then.
+      socket.on("error", () => {});
       socket.end();
       finish(true);
     };

package/dist/builtin/intercom/index.bundle.mjs

@@ -1663,6 +1663,7 @@ function checkSocketConnectable() {
       resolve(isConnected);
     };
     const onConnect = () => {
+      socket.on("error", () => {});
       socket.end();
       finish(true);
     };
@@ -3292,7 +3293,8 @@ function formatWorkflowStageRow(stage) {
   return `- \`${stage.target}\` [${stage.lifecycle.toUpperCase()}] workflow stage: ${stage.stageName}${stage.sessionId === undefined ? "" : ` session: \`${stage.sessionId}\``}`;
 }
 function formatWorkflowFutureStageRow(stage) {
-  return `- \`${stage.target}\` [future] ${stage.queuedCount} queued message${stage.queuedCount === 1 ? "" : "s"}`;
+  return `- \`${stage.target}\` [${stage.deliveryOnly === true ? "delivery" : "future"}] ${stage.queuedCount} queued message${stage.queuedCount === 1 ? "" : "s"}${(stage.deliveryStates ?? []).map((delivery) => `
+  delivery ${delivery.messageId} stage ${delivery.runId}/${delivery.stageId}${delivery.sessionId === undefined ? "" : ` session ${delivery.sessionId}`} ${delivery.state} — ${delivery.reason}`).join("")}`;
 }
 function registerIntercomTool(pi, deps) {
   const retryIdentities = new RetryIdentityReservations({ maxEntries: deps.retryIdentityMaxEntries });
@@ -6617,6 +6619,8 @@ function piIntercomExtension(pi, testOverrides = {}) {
     const messageGeneration = runtimeGeneration;
     const liveContext = getLiveContext(ctx, messageGeneration);
     if (!liveContext) {
+      if (receivedBeforeStageStart)
+        throw new Error("Intercom session retired before pending-stage delivery; message remains queued");
       return;
     }
     replyTracker = bindWorkflowReplyTracker(liveContext, replyTracker);
@@ -7263,7 +7267,13 @@ function piIntercomExtension(pi, testOverrides = {}) {
       return;
     }
     await ensureConnected("startup");
-    await pendingStageDelivery.deliverPending((from, message) => handleIncomingMessage(ctx, from, message, undefined, true));
+    const receivedMessageIds = ctx.sessionManager.getBranch().flatMap((entry) => {
+      if (entry.type !== "custom_message" || entry.customType !== "intercom_message")
+        return [];
+      const id = entry.details?.message?.id;
+      return typeof id === "string" ? [id] : [];
+    });
+    await pendingStageDelivery.deliverPending((from, message) => handleIncomingMessage(ctx, from, message, undefined, true), { sessionId: ctx.sessionManager.getSessionId(), receivedMessageIds });
   });
   pi.registerMessageRenderer("intercom_message", (message, _options, theme) => {
     const details = message.details;

package/dist/builtin/intercom/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@bastani/intercom",
-  "version": "0.9.26-alpha.2",
+  "version": "0.9.26-alpha.4",
   "private": true,
   "description": "Atomic extension providing a private coordination channel between parent and child agent sessions. Fork of: https://github.com/nicobailon/pi-intercom",
   "contributors": [

package/dist/builtin/intercom/types.ts

@@ -38,11 +38,22 @@ export interface WorkflowRunParentAnnouncement {
 	readonly stageKeys: readonly string[];
 }
 
+export interface WorkflowStickyDeliveryState {
+	readonly messageId: string;
+	readonly runId: string;
+	readonly stageId: string;
+	readonly sessionId?: string;
+	readonly state: string;
+	readonly reason: string;
+}
+
 export interface WorkflowPossibleStageAnnouncement {
 	/** Canonical depth-faithful path target, e.g. `workflow:<rootRunId>/orchestrator-*`. */
 	readonly target: string;
 	/** Current number of queued sticky entries matching this target. */
 	readonly queuedCount: number;
+	readonly deliveryStates?: readonly WorkflowStickyDeliveryState[];
+	readonly deliveryOnly?: true;
 }
 
 export interface WorkflowFutureStageRosterEntry {
@@ -51,6 +62,8 @@ export interface WorkflowFutureStageRosterEntry {
 	readonly target: string;
 	readonly queuedCount: number;
 	readonly group: string;
+	readonly deliveryStates?: readonly WorkflowStickyDeliveryState[];
+	readonly deliveryOnly?: true;
 }
 
 export interface SessionDirectory {

package/dist/builtin/mcp/native-client-licenses/NOTICE

@@ -4,6 +4,8 @@ https://github.com/earendil-works/pi/tree/e529a82c98fad679c6e20c03ffbb0bc7896fec
 
 Relative TypeScript imports use .js extensions for Atomic's compiled package.
 Atomic patches OAuth discovery to refresh changed authorization-server metadata.
+OAuth client metadata documents and exact callback path checks are ported from
+1499466d8581035a4dec6c869725b8712aea4bbe. Atomic does not use Pi's hosted client identity.
 Upstream's license is reproduced below. The additional MCP TypeScript SDK
 notice is retained in LICENSES/modelcontextprotocol-typescript-sdk.txt.
 

package/dist/builtin/mcp/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@bastani/mcp",
-  "version": "0.9.26-alpha.2",
+  "version": "0.9.26-alpha.4",
   "private": true,
   "description": "Atomic's pi-compatible MCP integration for server connections, OAuth, tools, resources, and terminal management.",
   "contributors": [

package/dist/builtin/subagents/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@bastani/subagents",
-  "version": "0.9.26-alpha.2",
+  "version": "0.9.26-alpha.4",
   "private": true,
   "description": "Atomic extension for delegating tasks to subagents with parallel execution. Fork of: https://github.com/nicobailon/pi-subagents",
   "contributors": [

package/dist/builtin/web-access/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@bastani/web-access",
-  "version": "0.9.26-alpha.2",
+  "version": "0.9.26-alpha.4",
   "private": true,
   "description": "Atomic extension for web search, URL fetching, GitHub repo cloning, PDF/video extraction. Fork of: https://github.com/nicobailon/pi-web-access",
   "contributors": [

package/dist/builtin/workflows/CHANGELOG.md

@@ -6,6 +6,12 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.1.0/),
 
 ## [Unreleased]
 
+## [0.9.26-alpha.4] - 2026-10-02
+
+### Fixed
+
+- Fixed sticky Intercom broadcasts to `workflow:<rootRunId>/**` missing later stages before their first model turn. Workflow status now reports per-stage delivery and skip results for retained messages ([#3406](https://github.com/bastani-inc/atomic/issues/3406)).
+
 ## [0.9.26-alpha.1] - 2026-10-01
 
 ### Fixed

package/dist/builtin/workflows/builtin/{chunk-kfsnh3w7.js → chunk-73p2cm5s.js}

@@ -8353,10 +8353,10 @@ function recordPendingStageMessageDeliveries(messages, runId, messageId, records
   if (index < 0)
     return messages;
   const entry = messages[index];
-  const recorded = new Set((entry.deliveries ?? []).map((delivery) => `${delivery.runId}\x00${delivery.stageId}`));
+  const recorded = new Set((entry.deliveries ?? []).map((delivery) => JSON.stringify([delivery.runId, delivery.stageId, delivery.sessionId, delivery.admission])));
   const additions = [];
   for (const record of records) {
-    const key = `${record.runId}\x00${record.stageId}`;
+    const key = JSON.stringify([record.runId, record.stageId, record.sessionId, record.admission]);
     if (recorded.has(key))
       continue;
     recorded.add(key);
@@ -8364,6 +8364,8 @@ function recordPendingStageMessageDeliveries(messages, runId, messageId, records
       runId: record.runId,
       stageId: record.stageId,
       ...record.stageName === undefined ? {} : { stageName: record.stageName },
+      ...record.sessionId === undefined ? {} : { sessionId: record.sessionId },
+      ...record.admission === undefined ? {} : { admission: record.admission },
       deliveredAt
     });
   }

package/dist/builtin/workflows/builtin/{chunk-rqmasd3d.js → chunk-n95myjcg.js}

@@ -39,7 +39,7 @@ import {
   reviewerFailureText,
   summarizeReviewConvergence,
   reverify_consolidated_batch
-} from "./chunk-kfsnh3w7.js";
+} from "./chunk-73p2cm5s.js";
 import {
   fold_usage
 } from "./chunk-tgt0s5e5.js";

package/dist/builtin/workflows/builtin/{chunk-wz783pvd.js → chunk-ycvg8y8k.js}

@@ -38,7 +38,7 @@ import {
   reviewerFailureText,
   summarizeReviewConvergence,
   reverify_consolidated_batch
-} from "./chunk-kfsnh3w7.js";
+} from "./chunk-73p2cm5s.js";
 import {
   VERIFICATION_SCALE
 } from "./chunk-n1910xc4.js";

package/dist/builtin/workflows/builtin/goal.js

@@ -1,7 +1,7 @@
 import {
   goal_default
-} from "./chunk-wz783pvd.js";
-import"./chunk-kfsnh3w7.js";
+} from "./chunk-ycvg8y8k.js";
+import"./chunk-73p2cm5s.js";
 import"./chunk-2377r57g.js";
 import"./chunk-z0d03ktm.js";
 import"./chunk-n1910xc4.js";

package/dist/builtin/workflows/builtin/index.js

@@ -14,11 +14,11 @@ import {
 import {
   generate_and_filter_default
 } from "./chunk-kb7s3gx2.js";
-import"./chunk-kfsnh3w7.js";
+import"./chunk-73p2cm5s.js";
 import"./chunk-z0d03ktm.js";
 import {
   goal_default
-} from "./chunk-wz783pvd.js";
+} from "./chunk-ycvg8y8k.js";
 import {
   open_claude_design_default
 } from "./chunk-nkj4qhj6.js";
@@ -27,7 +27,7 @@ import {
 } from "./chunk-94f8zfz1.js";
 import {
   ralph_default
-} from "./chunk-rqmasd3d.js";
+} from "./chunk-n95myjcg.js";
 import {
   tournament_default
 } from "./chunk-wf876n16.js";

package/dist/builtin/workflows/builtin/ralph.js

@@ -1,7 +1,7 @@
 import {
   ralph_default
-} from "./chunk-rqmasd3d.js";
-import"./chunk-kfsnh3w7.js";
+} from "./chunk-n95myjcg.js";
+import"./chunk-73p2cm5s.js";
 import"./chunk-2377r57g.js";
 import"./chunk-z0d03ktm.js";
 import"./chunk-n1910xc4.js";

package/dist/builtin/workflows/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@bastani/workflows",
-  "version": "0.9.26-alpha.2",
+  "version": "0.9.26-alpha.4",
   "private": true,
   "description": "Atomic extension for multi-stage workflow authoring and execution.",
   "contributors": [