@bastani/atomic 0.9.2-alpha.1 → 0.9.3-alpha.1

package/examples/extensions/subagent/README.md

@@ -117,7 +117,7 @@ Use a chain: first have scout find the read tool, then have planner suggest impr
 **Tool call formatting** (mimics built-in tools):
 - `$ command` for bash
 - `read ~/path:1-10` for read
-- `grep /pattern/ in ~/path` for grep
+- `search /pattern/ in ~/path` for search
 - etc.
 
 ## Agent Definitions
@@ -128,7 +128,7 @@ Agents are markdown files with YAML frontmatter:
 ---
 name: my-agent
 description: What this agent does
-tools: read, grep, find, ls
+tools: read, search, find, ls
 model: claude-haiku-4-5
 ---
 
@@ -145,9 +145,9 @@ Project agents override user agents with the same name when `agentScope: "both"`
 
 | Agent | Purpose | Model | Tools |
 |-------|---------|-------|-------|
-| `scout` | Fast codebase recon | Haiku | read, grep, find, ls, bash |
-| `planner` | Implementation plans | Sonnet | read, grep, find, ls |
-| `reviewer` | Code review | Sonnet | read, grep, find, ls, bash |
+| `scout` | Fast codebase recon | Haiku | read, search, find, ls, bash |
+| `planner` | Implementation plans | Sonnet | read, search, find, ls |
+| `reviewer` | Code review | Sonnet | read, search, find, ls, bash |
 | `worker` | General-purpose | Sonnet | (all default) |
 
 ## Workflow Prompts

package/examples/extensions/subagent/agents/planner.md

@@ -1,7 +1,7 @@
 ---
 name: planner
 description: Creates implementation plans from context and requirements
-tools: read, grep, find, ls
+tools: read, search, find, ls
 model: claude-sonnet-4-5
 ---
 

package/examples/extensions/subagent/agents/reviewer.md

@@ -1,7 +1,7 @@
 ---
 name: reviewer
 description: Code review specialist for quality and security analysis
-tools: read, grep, find, ls, bash
+tools: read, search, find, ls, bash
 model: claude-sonnet-4-5
 ---
 

package/examples/extensions/subagent/agents/scout.md

@@ -1,7 +1,7 @@
 ---
 name: scout
 description: Fast codebase recon that returns compressed context for handoff to other agents
-tools: read, grep, find, ls, bash
+tools: read, search, find, ls, bash
 model: claude-haiku-4-5
 ---
 
@@ -15,7 +15,7 @@ Thoroughness (infer from task, default medium):
 - Thorough: Trace all dependencies, check tests/types
 
 Strategy:
-1. grep/find to locate relevant code
+1. search/find to locate relevant code
 2. Read key sections (not entire files)
 3. Identify types, interfaces, key functions
 4. Note dependencies between files

package/examples/extensions/subagent/display.ts

@@ -96,11 +96,11 @@ export function formatToolCall(
         themeFg("dim", ` in ${shortenPath(rawPath)}`)
       );
     }
-    case "grep": {
+    case "search": {
       const pattern = (args.pattern || "") as string;
-      const rawPath = (args.path || ".") as string;
+      const rawPath = (args.path || args.paths || ".") as string;
       return (
-        themeFg("muted", "grep ") +
+        themeFg("muted", "search ") +
         themeFg("accent", `/${pattern}/`) +
         themeFg("dim", ` in ${shortenPath(rawPath)}`)
       );

package/examples/sdk/05-tools.ts

@@ -18,7 +18,7 @@ import { createAgentSession, SessionManager } from "@bastani/atomic";
 
 // Read-only mode (no edit/write)
 const { session: readOnlySession } = await createAgentSession({
-	tools: ["read", "grep", "find", "ls"],
+	tools: ["read", "search", "find", "ls"],
 	sessionManager: SessionManager.inMemory(),
 });
 console.log("Read-only session created");
@@ -26,7 +26,7 @@ readOnlySession.dispose();
 
 // Custom tool selection
 const { session: customToolsSession } = await createAgentSession({
-	tools: ["read", "bash", "grep"],
+	tools: ["read", "bash", "search"],
 	sessionManager: SessionManager.inMemory(),
 });
 console.log("Custom tools session created");
@@ -62,7 +62,7 @@ customCwdSession.dispose();
 // Or pick specific tools for custom cwd
 const { session: specificToolsSession } = await createAgentSession({
 	cwd: customCwd,
-	tools: ["read", "bash", "grep"],
+	tools: ["read", "bash", "search"],
 	sessionManager: SessionManager.inMemory(customCwd),
 });
 console.log("Specific tools with custom cwd session created");

package/examples/sdk/README.md

@@ -61,7 +61,7 @@ await loader.reload();
 const { session } = await createAgentSession({ resourceLoader: loader, authStorage, modelRegistry });
 
 // Read-only
-const { session } = await createAgentSession({ tools: ["read", "grep", "find", "ls"], authStorage, modelRegistry });
+const { session } = await createAgentSession({ tools: ["read", "search", "find", "ls"], authStorage, modelRegistry });
 
 // Defaults minus one tool
 const { session } = await createAgentSession({ excludedTools: ["ask_user_question"], authStorage, modelRegistry });

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@bastani/atomic",
-  "version": "0.9.2-alpha.1",
+  "version": "0.9.3-alpha.1",
   "description": "Atomic coding agent CLI with read, bash, edit, write tools and session management",
   "type": "module",
   "atomicConfig": {
@@ -68,7 +68,7 @@
     "prepublishOnly": "bun run clean && bun run build"
   },
   "dependencies": {
-    "@bastani/atomic-natives": "0.9.2-alpha.1",
+    "@bastani/atomic-natives": "0.9.3-alpha.1",
     "@bufbuild/protobuf": "^2.0.0",
     "@earendil-works/pi-agent-core": "^0.79.10",
     "@earendil-works/pi-ai": "^0.79.10",
@@ -86,6 +86,7 @@
     "ignore": "7.0.5",
     "jiti": "2.7.0",
     "linkedom": "^0.18.12",
+    "markit-ai": "0.5.3",
     "minimatch": "10.2.5",
     "open": "^11.0.0",
     "p-limit": "^7.3.0",