@bastani/atomic 0.9.12 → 0.9.13-alpha.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1187) hide show
  1. package/CHANGELOG.md +150 -0
  2. package/README.md +35 -17
  3. package/dist/builtin/i-have-adhd/CHANGELOG.md +17 -0
  4. package/dist/builtin/i-have-adhd/LICENSE +21 -0
  5. package/dist/builtin/i-have-adhd/README.md +18 -0
  6. package/dist/builtin/i-have-adhd/index.ts +238 -0
  7. package/dist/builtin/i-have-adhd/package.json +56 -0
  8. package/dist/builtin/i-have-adhd/skills/i-have-adhd/SKILL.md +140 -0
  9. package/dist/builtin/intercom/CHANGELOG.md +25 -0
  10. package/dist/builtin/intercom/README.md +30 -16
  11. package/dist/builtin/intercom/broker/bounded-stderr-install.ts +18 -0
  12. package/dist/builtin/intercom/broker/bounded-stderr.ts +132 -0
  13. package/dist/builtin/intercom/broker/broker.ts +12 -23
  14. package/dist/builtin/intercom/broker/client.ts +81 -5
  15. package/dist/builtin/intercom/broker/paths.ts +9 -0
  16. package/dist/builtin/intercom/broker/presence-handler.ts +103 -0
  17. package/dist/builtin/intercom/broker/spawn.ts +128 -29
  18. package/dist/builtin/intercom/contact-supervisor-tool.ts +13 -3
  19. package/dist/builtin/intercom/foreground-detach-handoff.ts +30 -14
  20. package/dist/builtin/intercom/group.ts +64 -25
  21. package/dist/builtin/intercom/index-heavy.ts +51 -8
  22. package/dist/builtin/intercom/index.ts +50 -22
  23. package/dist/builtin/intercom/intercom-tool.ts +82 -5
  24. package/dist/builtin/intercom/intercom-utils.ts +15 -29
  25. package/dist/builtin/intercom/lazy-subagent-ack.ts +11 -6
  26. package/dist/builtin/intercom/package.json +2 -3
  27. package/dist/builtin/intercom/runtime-group.ts +13 -0
  28. package/dist/builtin/intercom/skills/intercom/SKILL.md +30 -2
  29. package/dist/builtin/intercom/source-ownership.ts +9 -12
  30. package/dist/builtin/intercom/subagent-relay.ts +32 -16
  31. package/dist/builtin/intercom/terminal-ordering-barrier.ts +21 -4
  32. package/dist/builtin/intercom/types.ts +3 -1
  33. package/dist/builtin/intercom/ui/compose.ts +8 -6
  34. package/dist/builtin/intercom/ui/session-list.ts +7 -5
  35. package/dist/builtin/mcp/CHANGELOG.md +19 -0
  36. package/dist/builtin/mcp/README.md +3 -1
  37. package/dist/builtin/mcp/glimpse-ui.ts +2 -1
  38. package/dist/builtin/mcp/index.ts +10 -26
  39. package/dist/builtin/mcp/mcp-panel.ts +35 -34
  40. package/dist/builtin/mcp/mcp-setup-panel.ts +35 -33
  41. package/dist/builtin/mcp/npx-resolver.ts +3 -2
  42. package/dist/builtin/mcp/package.json +3 -3
  43. package/dist/builtin/mcp/sampling-handler.ts +5 -1
  44. package/dist/builtin/mcp/server-manager.ts +4 -7
  45. package/dist/builtin/mcp/startup-warmup.ts +20 -8
  46. package/dist/builtin/subagents/CHANGELOG.md +63 -0
  47. package/dist/builtin/subagents/README.md +144 -351
  48. package/dist/builtin/subagents/agents/worker.md +1 -1
  49. package/dist/builtin/subagents/package.json +5 -5
  50. package/dist/builtin/subagents/prompts/parallel-context-build.md +2 -2
  51. package/dist/builtin/subagents/prompts/parallel-handoff-plan.md +4 -4
  52. package/dist/builtin/subagents/prompts/review-loop.md +1 -1
  53. package/dist/builtin/subagents/skills/subagent/SKILL.md +39 -102
  54. package/dist/builtin/subagents/src/agents/agent-discovery.ts +1 -29
  55. package/dist/builtin/subagents/src/agents/agent-loaders.ts +1 -40
  56. package/dist/builtin/subagents/src/agents/agent-management-helpers.ts +6 -135
  57. package/dist/builtin/subagents/src/agents/agent-management.ts +52 -282
  58. package/dist/builtin/subagents/src/agents/agent-paths.ts +0 -22
  59. package/dist/builtin/subagents/src/agents/agent-types.ts +0 -40
  60. package/dist/builtin/subagents/src/agents/agents.ts +0 -3
  61. package/dist/builtin/subagents/src/agents/identity.ts +2 -4
  62. package/dist/builtin/subagents/src/agents/skills-paths.ts +8 -1
  63. package/dist/builtin/subagents/src/extension/doctor.ts +4 -24
  64. package/dist/builtin/subagents/src/extension/fanout-child.ts +76 -56
  65. package/dist/builtin/subagents/src/extension/index.ts +32 -39
  66. package/dist/builtin/subagents/src/extension/prompt-guidance.ts +2 -2
  67. package/dist/builtin/subagents/src/extension/schemas.ts +1 -157
  68. package/dist/builtin/subagents/src/extension/startup-maintenance.ts +25 -46
  69. package/dist/builtin/subagents/src/extension/tool-description.ts +4 -13
  70. package/dist/builtin/subagents/src/intercom/intercom-bridge.ts +6 -2
  71. package/dist/builtin/subagents/src/intercom/result-intercom.ts +27 -29
  72. package/dist/builtin/subagents/src/intercom/supervisor-authorization.ts +9 -2
  73. package/dist/builtin/subagents/src/runs/background/async-job-tracker.ts +248 -435
  74. package/dist/builtin/subagents/src/runs/background/completion-notification.ts +8 -3
  75. package/dist/builtin/subagents/src/runs/background/notify.ts +83 -26
  76. package/dist/builtin/subagents/src/runs/foreground/execution-run-sync.ts +1 -281
  77. package/dist/builtin/subagents/src/runs/foreground/execution-updates.ts +0 -5
  78. package/dist/builtin/subagents/src/runs/foreground/execution.ts +1 -4
  79. package/dist/builtin/subagents/src/runs/foreground/inprocess-run-sync.ts +559 -0
  80. package/dist/builtin/subagents/src/runs/foreground/subagent-executor-async.ts +103 -259
  81. package/dist/builtin/subagents/src/runs/foreground/subagent-executor-context.ts +29 -31
  82. package/dist/builtin/subagents/src/runs/foreground/subagent-executor-input.ts +10 -173
  83. package/dist/builtin/subagents/src/runs/foreground/subagent-executor-parallel-task.ts +7 -5
  84. package/dist/builtin/subagents/src/runs/foreground/subagent-executor-parallel.ts +13 -6
  85. package/dist/builtin/subagents/src/runs/foreground/subagent-executor-resume.ts +1 -646
  86. package/dist/builtin/subagents/src/runs/foreground/subagent-executor-runtime.ts +2 -7
  87. package/dist/builtin/subagents/src/runs/foreground/subagent-executor-single.ts +14 -7
  88. package/dist/builtin/subagents/src/runs/foreground/subagent-executor-status.ts +39 -20
  89. package/dist/builtin/subagents/src/runs/foreground/subagent-executor-types.ts +16 -11
  90. package/dist/builtin/subagents/src/runs/foreground/subagent-executor-worktree.ts +1 -14
  91. package/dist/builtin/subagents/src/runs/foreground/subagent-executor.ts +194 -104
  92. package/dist/builtin/subagents/src/runs/inprocess/background-single.ts +195 -0
  93. package/dist/builtin/subagents/src/runs/inprocess/background.ts +90 -0
  94. package/dist/builtin/subagents/src/runs/inprocess/child-policy.ts +27 -0
  95. package/dist/builtin/subagents/src/runs/inprocess/control-registry.ts +55 -0
  96. package/dist/builtin/subagents/src/runs/inprocess/control-status.ts +106 -0
  97. package/dist/builtin/subagents/src/runs/inprocess/index.ts +50 -0
  98. package/dist/builtin/subagents/src/runs/inprocess/nested-routing.ts +218 -0
  99. package/dist/builtin/subagents/src/runs/{shared/subagent-prompt-runtime.ts → inprocess/prompt-behavior.ts} +37 -75
  100. package/dist/builtin/subagents/src/runs/inprocess/runner.ts +1392 -0
  101. package/dist/builtin/subagents/src/runs/{shared/nested-events.ts → inprocess/runtime-support/nested-api.ts} +13 -7
  102. package/dist/builtin/subagents/src/runs/{shared/nested-events-control.ts → inprocess/runtime-support/nested-control.ts} +18 -17
  103. package/dist/builtin/subagents/src/runs/{shared/nested-events-core.ts → inprocess/runtime-support/nested-core.ts} +14 -61
  104. package/dist/builtin/subagents/src/runs/{shared/nested-events-projection.ts → inprocess/runtime-support/nested-projection.ts} +4 -12
  105. package/dist/builtin/subagents/src/runs/{shared/nested-events-registry.ts → inprocess/runtime-support/nested-registry.ts} +19 -4
  106. package/dist/builtin/subagents/src/runs/{shared/nested-render.ts → inprocess/runtime-support/nested-rendering.ts} +3 -3
  107. package/dist/builtin/subagents/src/runs/{shared/nested-events-sanitize.ts → inprocess/runtime-support/nested-sanitize.ts} +4 -6
  108. package/dist/builtin/subagents/src/runs/inprocess.ts +1 -0
  109. package/dist/builtin/subagents/src/runs/shared/intercom-group.ts +23 -7
  110. package/dist/builtin/subagents/src/runs/shared/model-candidate-filter.ts +0 -1
  111. package/dist/builtin/subagents/src/runs/shared/model-fallback.ts +15 -492
  112. package/dist/builtin/subagents/src/runs/shared/parallel-utils.ts +13 -97
  113. package/dist/builtin/subagents/src/runs/shared/run-history.ts +3 -5
  114. package/dist/builtin/subagents/src/runs/shared/single-output.ts +4 -4
  115. package/dist/builtin/subagents/src/runs/shared/worktree.ts +7 -2
  116. package/dist/builtin/subagents/src/shared/formatters.ts +2 -56
  117. package/dist/builtin/subagents/src/shared/settings.ts +14 -350
  118. package/dist/builtin/subagents/src/shared/types-async.ts +8 -32
  119. package/dist/builtin/subagents/src/shared/types-config.ts +29 -13
  120. package/dist/builtin/subagents/src/shared/types-depth.ts +30 -56
  121. package/dist/builtin/subagents/src/shared/types-results.ts +18 -60
  122. package/dist/builtin/subagents/src/shared/types-runtime.ts +0 -1
  123. package/dist/builtin/subagents/src/shared/utils.ts +5 -0
  124. package/dist/builtin/subagents/src/slash/bridge-settlement.ts +87 -0
  125. package/dist/builtin/subagents/src/slash/prompt-template-bridge.ts +49 -10
  126. package/dist/builtin/subagents/src/slash/slash-bridge.ts +27 -7
  127. package/dist/builtin/subagents/src/slash/slash-commands.ts +37 -82
  128. package/dist/builtin/subagents/src/slash/slash-live-state.ts +3 -94
  129. package/dist/builtin/subagents/src/tui/render-event-formatting.ts +3 -35
  130. package/dist/builtin/subagents/src/tui/render-progress.ts +89 -0
  131. package/dist/builtin/subagents/src/tui/render-result-compact.ts +77 -68
  132. package/dist/builtin/subagents/src/tui/render-result.ts +79 -99
  133. package/dist/builtin/subagents/src/tui/render-stable-output.ts +1 -6
  134. package/dist/builtin/subagents/src/tui/render-status-progress.ts +8 -5
  135. package/dist/builtin/subagents/src/tui/render-widget-graph.ts +6 -63
  136. package/dist/builtin/subagents/src/tui/render-widget.ts +0 -24
  137. package/dist/builtin/web-access/CHANGELOG.md +14 -0
  138. package/dist/builtin/web-access/chrome-cookies.ts +3 -2
  139. package/dist/builtin/web-access/github-api.ts +7 -6
  140. package/dist/builtin/web-access/github-extract.ts +2 -1
  141. package/dist/builtin/web-access/package.json +3 -3
  142. package/dist/builtin/web-access/subprocess.ts +3 -1
  143. package/dist/builtin/web-access/summary-review.ts +2 -2
  144. package/dist/builtin/web-access/web-search-features.ts +38 -22
  145. package/dist/builtin/web-access/web-search-summary.ts +2 -2
  146. package/dist/builtin/workflows/CHANGELOG.md +70 -0
  147. package/dist/builtin/workflows/README.md +54 -4
  148. package/dist/builtin/workflows/builtin/open-claude-design-utils.ts +3 -0
  149. package/dist/builtin/workflows/builtin/ralph-models.ts +25 -20
  150. package/dist/builtin/workflows/builtin/shared-prompts.ts +5 -2
  151. package/dist/builtin/workflows/package.json +2 -2
  152. package/dist/builtin/workflows/src/durable/backend.ts +25 -1
  153. package/dist/builtin/workflows/src/durable/completed-catalog-stage-groups.ts +60 -3
  154. package/dist/builtin/workflows/src/durable/completed-catalog.ts +67 -1
  155. package/dist/builtin/workflows/src/durable/completed-subtree.ts +22 -7
  156. package/dist/builtin/workflows/src/durable/dbos-metadata.ts +15 -1
  157. package/dist/builtin/workflows/src/durable/local-command.ts +2 -1
  158. package/dist/builtin/workflows/src/durable/resume-runtime.ts +1 -0
  159. package/dist/builtin/workflows/src/durable/tool-primitive.ts +4 -28
  160. package/dist/builtin/workflows/src/durable/types.ts +22 -1
  161. package/dist/builtin/workflows/src/durable/workflow-child-result.ts +3 -1
  162. package/dist/builtin/workflows/src/engine/primitives/workflow.ts +1 -1
  163. package/dist/builtin/workflows/src/engine/run-durable-finalize.ts +10 -2
  164. package/dist/builtin/workflows/src/engine/run-durable-topology.ts +9 -2
  165. package/dist/builtin/workflows/src/engine/run.ts +17 -1
  166. package/dist/builtin/workflows/src/extension/atomic-stage-session.ts +18 -39
  167. package/dist/builtin/workflows/src/extension/companions.ts +1 -1
  168. package/dist/builtin/workflows/src/extension/config-file-loader.ts +10 -1
  169. package/dist/builtin/workflows/src/extension/config-loader.ts +1 -1
  170. package/dist/builtin/workflows/src/extension/dispatcher.ts +4 -0
  171. package/dist/builtin/workflows/src/extension/index.bundle.mjs +2095 -1181
  172. package/dist/builtin/workflows/src/extension/lifecycle-notifications.ts +332 -39
  173. package/dist/builtin/workflows/src/extension/mcp.ts +13 -2
  174. package/dist/builtin/workflows/src/extension/render-result.ts +5 -0
  175. package/dist/builtin/workflows/src/extension/runtime-durable-resume.ts +6 -3
  176. package/dist/builtin/workflows/src/extension/runtime.ts +7 -1
  177. package/dist/builtin/workflows/src/extension/ui-surface.ts +7 -20
  178. package/dist/builtin/workflows/src/extension/wiring.ts +86 -17
  179. package/dist/builtin/workflows/src/extension/workflow-command-registration.ts +12 -3
  180. package/dist/builtin/workflows/src/extension/workflow-durable-resume-command.ts +5 -2
  181. package/dist/builtin/workflows/src/extension/workflow-ports.ts +14 -6
  182. package/dist/builtin/workflows/src/extension/workflow-prompts.ts +11 -6
  183. package/dist/builtin/workflows/src/extension/workflow-run-control-command.ts +17 -7
  184. package/dist/builtin/workflows/src/extension/workflow-status-summary.ts +11 -0
  185. package/dist/builtin/workflows/src/extension/workflow-tool-content.ts +18 -1
  186. package/dist/builtin/workflows/src/extension/workflow-tool-control.ts +12 -8
  187. package/dist/builtin/workflows/src/extension/workflow-tool.ts +9 -4
  188. package/dist/builtin/workflows/src/intercom/intercom-routing.ts +12 -6
  189. package/dist/builtin/workflows/src/intercom/result-intercom.ts +35 -4
  190. package/dist/builtin/workflows/src/runs/background/quit.ts +28 -4
  191. package/dist/builtin/workflows/src/runs/background/resume-acknowledgements.ts +2 -1
  192. package/dist/builtin/workflows/src/runs/background/status.ts +70 -8
  193. package/dist/builtin/workflows/src/runs/foreground/executor-abort.ts +11 -3
  194. package/dist/builtin/workflows/src/runs/foreground/executor-child-boundary.ts +2 -1
  195. package/dist/builtin/workflows/src/runs/foreground/executor-direct-helpers.ts +4 -0
  196. package/dist/builtin/workflows/src/runs/foreground/executor-exit-manager.ts +26 -2
  197. package/dist/builtin/workflows/src/runs/foreground/executor-prompt-nodes.ts +3 -1
  198. package/dist/builtin/workflows/src/runs/foreground/executor-run-finalizers.ts +3 -2
  199. package/dist/builtin/workflows/src/runs/foreground/executor-stage-control.ts +1 -1
  200. package/dist/builtin/workflows/src/runs/foreground/stage-runner-context.ts +1 -1
  201. package/dist/builtin/workflows/src/runs/foreground/stage-runner-controller.ts +688 -38
  202. package/dist/builtin/workflows/src/runs/foreground/stage-runner-types.ts +3 -1
  203. package/dist/builtin/workflows/src/runs/shared/model-fallback-failures.ts +19 -514
  204. package/dist/builtin/workflows/src/runs/shared/retry.ts +44 -0
  205. package/dist/builtin/workflows/src/runs/shared/worktree-git-runner.ts +5 -2
  206. package/dist/builtin/workflows/src/runs/shared/worktree-setup.ts +2 -0
  207. package/dist/builtin/workflows/src/shared/authoring-contract-stage.d.ts +10 -3
  208. package/dist/builtin/workflows/src/shared/authoring-contract-stage.ts +11 -3
  209. package/dist/builtin/workflows/src/shared/authoring-contract-ui.d.ts +5 -1
  210. package/dist/builtin/workflows/src/shared/authoring-contract-ui.ts +5 -0
  211. package/dist/builtin/workflows/src/shared/graph-store-snapshot.ts +34 -2
  212. package/dist/builtin/workflows/src/shared/persistence-restore-helpers.ts +28 -6
  213. package/dist/builtin/workflows/src/shared/persistence-restore.ts +3 -0
  214. package/dist/builtin/workflows/src/shared/persistence-session-entries.ts +4 -0
  215. package/dist/builtin/workflows/src/shared/run-indicator-status.ts +75 -0
  216. package/dist/builtin/workflows/src/shared/stage-ui-broker.ts +10 -4
  217. package/dist/builtin/workflows/src/shared/store-public-types.ts +47 -9
  218. package/dist/builtin/workflows/src/shared/store-run-methods.ts +42 -8
  219. package/dist/builtin/workflows/src/shared/store-stage-methods.ts +31 -8
  220. package/dist/builtin/workflows/src/shared/store-types.ts +35 -1
  221. package/dist/builtin/workflows/src/shared/timing.ts +10 -0
  222. package/dist/builtin/workflows/src/shared/workflow-artifact-env.ts +21 -0
  223. package/dist/builtin/workflows/src/shared/workflow-artifacts.ts +2 -5
  224. package/dist/builtin/workflows/src/tui/chat-surface-message.ts +22 -2
  225. package/dist/builtin/workflows/src/tui/dispatch-confirm.ts +37 -2
  226. package/dist/builtin/workflows/src/tui/graph-view-constants.ts +0 -15
  227. package/dist/builtin/workflows/src/tui/graph-view-graph-render.ts +38 -47
  228. package/dist/builtin/workflows/src/tui/graph-view-input.ts +48 -45
  229. package/dist/builtin/workflows/src/tui/graph-view-layout.ts +266 -0
  230. package/dist/builtin/workflows/src/tui/graph-view-render-helpers.ts +1 -86
  231. package/dist/builtin/workflows/src/tui/graph-view-render.ts +209 -91
  232. package/dist/builtin/workflows/src/tui/graph-view-state.ts +5 -7
  233. package/dist/builtin/workflows/src/tui/graph-view-types.ts +13 -7
  234. package/dist/builtin/workflows/src/tui/inline-form-editor.ts +8 -6
  235. package/dist/builtin/workflows/src/tui/inline-form-overlay.ts +2 -1
  236. package/dist/builtin/workflows/src/tui/inputs-overlay.ts +7 -4
  237. package/dist/builtin/workflows/src/tui/inputs-picker-input.ts +66 -0
  238. package/dist/builtin/workflows/src/tui/keybindings-adapter.ts +1 -0
  239. package/dist/builtin/workflows/src/tui/node-card.ts +1 -1
  240. package/dist/builtin/workflows/src/tui/overlay-adapter.ts +18 -46
  241. package/dist/builtin/workflows/src/tui/overlay-terminal-modes.ts +15 -26
  242. package/dist/builtin/workflows/src/tui/session-list.ts +1 -1
  243. package/dist/builtin/workflows/src/tui/session-overlays.ts +19 -12
  244. package/dist/builtin/workflows/src/tui/session-picker.ts +47 -4
  245. package/dist/builtin/workflows/src/tui/stage-chat-view-footer-status.ts +5 -14
  246. package/dist/builtin/workflows/src/tui/stage-chat-view-input.ts +8 -7
  247. package/dist/builtin/workflows/src/tui/stage-chat-view-state.ts +12 -3
  248. package/dist/builtin/workflows/src/tui/stage-chat-view-types.ts +1 -11
  249. package/dist/builtin/workflows/src/tui/stage-chat-view.ts +0 -8
  250. package/dist/builtin/workflows/src/tui/status-list.ts +32 -47
  251. package/dist/builtin/workflows/src/tui/store-widget-installer.ts +9 -5
  252. package/dist/builtin/workflows/src/tui/widget.ts +16 -46
  253. package/dist/builtin/workflows/src/tui/workflow-attach-pane-types.ts +0 -15
  254. package/dist/builtin/workflows/src/tui/workflow-attach-pane.ts +2 -26
  255. package/dist/builtin/workflows/src/tui/workflow-status.ts +3 -3
  256. package/dist/bun/split-loader.js +2 -0
  257. package/dist/bun/split-loader.js.map +1 -1
  258. package/dist/cli/args.d.ts.map +1 -1
  259. package/dist/cli/args.js +6 -2
  260. package/dist/cli/args.js.map +1 -1
  261. package/dist/cli/auth-check.d.ts +35 -0
  262. package/dist/cli/auth-check.d.ts.map +1 -0
  263. package/dist/cli/auth-check.js +100 -0
  264. package/dist/cli/auth-check.js.map +1 -0
  265. package/dist/cli/auth-command.d.ts +27 -0
  266. package/dist/cli/auth-command.d.ts.map +1 -0
  267. package/dist/cli/auth-command.js +150 -0
  268. package/dist/cli/auth-command.js.map +1 -0
  269. package/dist/cli/config-selector.js +2 -2
  270. package/dist/cli/config-selector.js.map +1 -1
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@@ -17,11 +17,22 @@ It is a **static reference**. It does not change runtime model routing — routi
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  The table below is a snapshot of the [DeepSWE](https://deepswe.datacurve.ai/) leaderboard (v1.1, best effort per model), a long-horizon coding-agent benchmark reporting `pass@1` and average dollars per task. Benchmarks and pricing drift and new models ship constantly, so **treat the live leaderboards as authoritative** and refresh this page from them rather than hand-maintaining scores. See [Benchmark sources & when to reference each](/models/artificial-analysis-index). **Last compiled: 2026-07-17.**
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  </Note>
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+ ## Benchmark levels are measurement settings
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+
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+ The thinking level in brackets in the chart is the **measurement configuration used for that benchmark result**, not a universal workflow default. A score measured at `max` does not mean every stage using that model should use `max`; benchmark model identity and production thinking effort are separate choices. When authoring a workflow, choose effort from the stage role and cost of being wrong, then verify that the configured model catalog supports the level.
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+ ## Pin model identity
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+
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+ When a workflow needs an exact model, call `workflow({ action: "models" })` and pin a returned `fullId`. Do not pin a
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+ bare model ID: the same exact model ID can belong to more than one provider. For a bare exact `--model` ID, Atomic
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+ uses the sole matching provider with configured authentication; if none or more than one match is authenticated, it
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+ reports the ambiguity. Use `--provider <provider> --model <id>` or `--model <provider>/<id>` to choose explicitly.
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  ## Recommendation chart
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  The Pareto frontier — models where nothing else is both cheaper and more accurate — is currently **gpt-5.6-sol** (accuracy ceiling), **gpt-5.6-terra**, **kimi-k3**, **gpt-5.6-luna**, **grok-4.5**, and **muse-spark-1.1**. Everything else is dominated and earns a place only through role fit or provider diversity. For the frontier reasoning, see [Pareto Efficiency](/models/pareto-efficiency).
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- | Model [level] | pass@1 | $/task | Verdict | Use it for |
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+ | Model [benchmark measurement level] | pass@1 | $/task | Verdict | Use it for |
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  | --- | --- | --- | --- | --- |
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  | gpt-5.6-sol [max] | 73% | $8.39 | Accuracy ceiling / frontier | Judgment gates where a wrong verdict wastes a whole loop, and the hardest debugging; current top scorer |
27
38
  | gpt-5.6-terra [max] | 70% | $4.95 | Frontier — best top-tier value | High-accuracy default for reviewers and planners; matches fable-5's accuracy at ~4× lower cost |
@@ -44,17 +55,32 @@ The Pareto frontier — models where nothing else is both cheaper and more accur
44
55
  Scores above are DeepSWE `pass@1` with ±CI omitted for readability; see the [live leaderboard](https://deepswe.datacurve.ai/) for confidence intervals, output-token, and step counts. A model absent from both DeepSWE and Artificial Analysis should be marked **unmeasured** rather than assigned a guessed score — unmeasured models may still remain operational defaults.
45
56
  </Note>
46
57
 
58
+ ## Role-based thinking effort
59
+
60
+ Use this table when the user has not requested a thinking level. It is a production default by stage role, not a claim about the level used by any benchmark row:
61
+
62
+ | Stage role | Default thinking level | Why |
63
+ | --- | --- | --- |
64
+ | Security, identity, adversarial challenge, final approval | `max` | A wrong judgment can create a high-risk false approval or waste a full downstream loop. |
65
+ | Codebase mapping, lifecycle analysis, compatibility, planning, synthesis, triage, repair | `high` | These stages must resolve demanding uncertainty and preserve evidence across handoffs; routine synthesis may use `medium` when evidence quality holds. |
66
+ | User-impact review and final reporting | `medium` | Clear evidence-backed summaries usually do not need the deepest reasoning. |
67
+ | Deterministic checks | No model call | Run typechecks, tests, schema checks, runtime probes, and artifact checks as durable tool nodes. |
68
+
69
+ Reserve `max` for a high-cost-of-error role or an explicit user request. An explicit request wins over this role default, but the requested level still must appear in the configured catalog; do not invent an unsupported suffix. For each primary and fallback, choose a level for the same stage role independently. A fallback is not a reason to inherit `max` mechanically: use the role default at a supported level, choose another catalog model when needed, or leave the stage unpinned rather than guessing.
70
+
47
71
  ## Scenario-based guidance
48
72
 
49
73
  Pick by the cost of being wrong in each role, not by raw accuracy. Match the role to the benchmark that best measures it (see [Benchmark sources](/models/artificial-analysis-index)).
50
74
 
51
- - **Reviewer / judgment gates** — a wrong verdict discards an entire loop, so pay for accuracy: `gpt-5.6-sol [max]` primary, `gpt-5.6-terra` as reviewer-B, and a different family (`kimi-k3` or `glm-5.2`) as reviewer-C for decorrelated errors. Benchmark to weight: DeepSWE pass@1 and the AA Agentic Index.
52
- - **Planner** — `gpt-5.6-terra [max]` for high-accuracy planning at reasonable cost; `gpt-5.6-sol` when the plan gates an expensive loop.
53
- - **Debugger** — `gpt-5.6-sol [max]` primary; deep reasoning pays off where root-causing is expensive. Benchmark to weight: DeepSWE pass@1, Terminal-Bench.
54
- - **Research** — `gpt-5.6-luna [max]` as the workhorse, with `kimi-k3` in the fallback chain for provider diversity. Benchmark to weight: AA-LCR (long context), AA-Omniscience (factual reliability).
55
- - **Orchestrator / worker / cheap loops** — `gpt-5.6-luna [max]` for the main worker and code-simplifier subagents; `grok-4.5 [high]` or `muse-spark-1.1 [xhigh]` for trivial mechanical one-shots.
56
- - **Design** — a quality-first, unbenchmarked domain; keep a top-tier model (`gpt-5.6-sol` or `claude-fable-5`) here and rely on human judgment rather than a score.
57
- - **Interactive coding sessions** — `gpt-5.6-terra [max]` as a balanced default.
75
+ - **Reviewer / judgment gates** — use `max` when the reviewer makes a security, identity, adversarial, or final-approval decision whose wrong verdict discards an entire loop. `gpt-5.6-sol` remains the accuracy-first model recommendation; use a different family for reviewer-B/C when decorrelated errors matter. Benchmark to weight: DeepSWE pass@1 and the AA Agentic Index.
76
+ - **Codebase mapping / planner** — start at `high` for repository mapping, lifecycle analysis, compatibility, and plans. `gpt-5.6-terra` is a strong fit; raise to `max` only when the plan itself gates a high-cost loop or the user asks for it.
77
+ - **Debugger / triage / repair** — start at `high`; deep reasoning pays off when root-causing or repairing is costly, but `max` is not the blanket debugger setting. Benchmark to weight: DeepSWE pass@1 and Terminal-Bench.
78
+ - **Research / synthesis** — use `high` for demanding research and evidence reconciliation; use `medium` for routine synthesis when the evidence is already strong. `gpt-5.6-luna` is the workhorse model recommendation. Benchmark to weight: AA-LCR (long context) and AA-Omniscience (factual reliability).
79
+ - **Orchestrator / worker / cheap loops** — use `high` for demanding workers and `medium` or lower for routine or mechanical loops when their evidence remains sufficient. `gpt-5.6-luna`, `grok-4.5`, and `muse-spark-1.1` are role-fit choices; their bracketed chart levels are measurements, not defaults.
80
+ - **User-impact review / final reporting** — use `medium` for impact summaries and reports that preserve the evidence needed by the user. Do not spend `max` here unless the user explicitly requests it or the role has become a high-cost-of-error approval.
81
+ - **Design** — a quality-first, unbenchmarked domain; keep a top-tier model (`gpt-5.6-sol` or `claude-fable-5`) when the design decision has high failure cost, and choose effort by the review or approval role rather than by the benchmark row.
82
+ - **Interactive coding sessions** — use `high` for complex, multi-step coding and `medium` for routine edits; reserve `max` for a high-cost-of-error judgment or an explicit user request.
83
+ - **Deterministic checks** — make typechecks, tests, schema validation, runtime probes, and artifact inspection tool nodes with no model call. Model self-report is not verification evidence.
58
84
 
59
85
  ## Related
60
86
 
package/docs/models.md CHANGED
@@ -2,7 +2,7 @@
2
2
 
3
3
  Add custom providers and models (Ollama, vLLM, LM Studio, proxies) via the single `models.json` in the active Atomic agent directory, normally `~/.atomic/agent/models.json`, or the directory selected by `ATOMIC_CODING_AGENT_DIR`/`PI_CODING_AGENT_DIR`. Atomic reads only that file: it does not read project-scoped `.atomic/models.json`, fall back to `~/.pi/agent/models.json`, or merge `.pi` and `.atomic` model configuration files. The legacy `.pi` read fallback remains available for configuration surfaces that explicitly use layered config paths, such as `auth.json`; it does not apply to `models.json`.
4
4
 
5
- The interactive `/model` selector renders the current authenticated snapshot immediately and refreshes network-backed catalogs in the background for up to 15 seconds. The direct `/model <model_name>` route searches under the same deadline and falls back to cached models when refresh stalls or fails. The terminal owns that deadline: it stops waiting and replaces `Refreshing model catalogs…` with a cached-model timeout or error status even when lower-level work rejects or ignores cancellation. In isolated-engine sessions the same deadline covers both credential reload and catalog work inside the engine, and model selection does not queue behind the refresh. Login and logout publish credential changes independently of catalog refresh, and a refresh that started against an older credential generation is discarded instead of restoring stale provider availability. A slow catalog therefore falls back to cached models without requiring an `auth.json` or `~/.atomic` reset.
5
+ The interactive `/model` selector and `/scoped-models` render the current authenticated snapshot immediately and refresh network-backed catalogs in the background for up to 15 seconds. A direct `/model <model_name>` checks an exact cached match first; only a miss waits for the same bounded refresh, then falls back to the current cache when refresh stalls or fails. Closing either selector cancels its background refresh. The terminal owns that deadline: it stops waiting and replaces `Refreshing model catalogs…` with a cached-model timeout or error status even when lower-level work rejects or ignores cancellation. In isolated-engine sessions the same deadline covers both credential reload and catalog work inside the engine, and model selection does not queue behind the refresh. Login and logout publish credential changes independently of catalog refresh, and a refresh that started against an older credential generation is discarded instead of restoring stale provider availability. A slow catalog therefore falls back to cached models without requiring an `auth.json` or `~/.atomic` reset.
6
6
 
7
7
  A complete `defaultProvider`/`defaultModel` pair in `settings.json` is resolved after built-in, configured, and extension providers register. If the provider remains unsupported, interactive mode reports a generic saved-configuration warning and leaves model selection open instead of routing the session to a different provider. Print and JSON modes write that diagnostic to stderr and exit nonzero before prompting, keeping JSON stdout JSONL-clean. RPC rejects `prompt` with the same correlated diagnostic until an explicit successful `set_model` selects an available model or an explicit model cycle returns a different available model. A null or unchanged cycle result does not clear the condition. If the provider is supported but the model is unknown or lacks authentication, normal automatic selection of an available authenticated model continues. Valid custom- and extension-provider defaults resolve once their provider registration is available. See [Settings](/settings#model--thinking).
8
8
 
@@ -196,6 +196,8 @@ If your command is slow, expensive, rate-limited, or should keep using a previou
196
196
  }
197
197
  ```
198
198
 
199
+ In `models.json`, `headers` values must be strings. A `null` suppression marker is supplied only by provider/catalog auth or a `before_provider_headers` extension hook; when present there, `null` suppresses the provider's default header with the same name.
200
+
199
201
  ## Model Configuration
200
202
 
201
203
  | Field | Required | Default | Description |
@@ -208,6 +210,7 @@ If your command is slow, expensive, rate-limited, or should keep using a previou
208
210
  | `input` | No | `["text"]` | Input types: `["text"]` or `["text", "image"]` |
209
211
  | `contextWindow` | No | `128000` | Default/effective context window size in tokens |
210
212
  | `maxTokens` | No | `16384` | Maximum output tokens |
213
+ | `samplingParams` | No | omitted | Sampling parameters merged verbatim into every request body for OpenAI-compatible APIs (see below) |
211
214
  | `cost` | No | all zeros | Complete base rates per million tokens plus optional request-wide `tiers` (see below) |
212
215
  | `compat` | No | provider `compat` | Provider compatibility overrides. Merged with provider-level `compat` when both are set. |
213
216
  | `deferredToolsMode` | No | omitted | Deferred tool-loading protocol; set to `"kimi"` for Kimi-compatible deferred tools |
@@ -217,6 +220,26 @@ Current behavior:
217
220
  - The configured `name` is used for model matching and secondary model detail text. It does not replace the footer/status-bar model id.
218
221
 
219
222
 
223
+ ### Sampling Parameters
224
+
225
+ `samplingParams` is a free-form object merged into every request body for an OpenAI-compatible model after the fields Atomic sets, so its keys win. Use it to send parameters that Atomic does not model, including server-specific values such as llama.cpp's `min_p` or vLLM's `top_k`:
226
+
227
+ ```json
228
+ {
229
+ "id": "deepseek-v4-flash",
230
+ "samplingParams": {
231
+ "temperature": 1.0,
232
+ "top_p": 0.95,
233
+ "top_k": 0,
234
+ "min_p": 0
235
+ }
236
+ }
237
+ ```
238
+
239
+ Only OpenAI-compatible APIs apply these values (`openai-completions`, `openai-responses`, and `azure-openai-responses`); other APIs ignore them. Per-request keys override model defaults and named request fields. In `modelOverrides`, `samplingParams` merges per key with the base model's values. Keys are provider-defined and remain unchanged; malformed `samplingParams` values are rejected while loading `models.json`.
240
+
241
+ For vLLM OpenAI-compatible models that share the reasoning and answer budgets, set `compat.supportsThinkingTokenBudget` to `true`. Atomic sends the opt-in `thinking_token_budget` value for an enabled thinking level and always leaves 1024 tokens for the final answer. Pi's defaults are 1024, 2048, 8192, and 16384 tokens for `minimal`, `low`, `medium`, and `high`; the `thinkingBudgets` settings override them. `xhigh` and `max` use the `high` budget, and Atomic omits the field when no positive budget remains after reserving answer space.
242
+
220
243
  Model references resolve the complete, unmodified ID before Atomic interprets thinking suffixes or glob syntax. For example, if the catalog contains the literal ID `provider/literal[free]:high`, that complete model wins and `:high` remains part of its ID; it does not become a thinking-level suffix and `[free]` is not treated as a character class. Only when the complete ID is absent does Atomic parse a valid thinking suffix, try the stripped exact ID, then apply glob/fuzzy matching. This preserves literal provider IDs without changing ordinary `*`, `?`, bracket-glob, ambiguity, ordering, or deduplication behavior.
221
244
  ### Request-wide Cost Tiers
222
245
 
@@ -416,7 +439,7 @@ Use `modelOverrides` to customize specific models without replacing the provider
416
439
  }
417
440
  ```
418
441
 
419
- `modelOverrides` supports these fields per model: `name`, `reasoning`, `thinkingLevelMap`, `input`, `cost` (partial scalar rates plus optional full tier-array replacement), `contextWindow`, `maxTokens`, `headers`, `compat`.
442
+ `modelOverrides` supports these fields per model: `name`, `reasoning`, `thinkingLevelMap`, `input`, `cost` (partial scalar rates plus optional full tier-array replacement), `contextWindow`, `maxTokens`, `samplingParams` (merged per key), `headers`, `compat`.
420
443
 
421
444
  Atomic reads one `models.json` from the active agent directory. It does not layer model overrides from `.pi` and `.atomic` files.
422
445
 
@@ -494,6 +517,8 @@ For providers with partial OpenAI compatibility, use the `compat` field.
494
517
  | `supportsDeveloperRole` | Use `developer` vs `system` role |
495
518
  | `supportsReasoningEffort` | Support for `reasoning_effort` parameter |
496
519
  | `supportsUsageInStreaming` | Supports `stream_options: { include_usage: true }` (default: `true`) |
520
+ | `supportsFinishReason` | Whether streamed responses include `finish_reason`. When `false`, Atomic infers `stop` or `toolUse` when the stream ends. Default: `true`. |
521
+ | `supportsThinkingTokenBudget` | Whether the endpoint accepts top-level vLLM `thinking_token_budget`; use it with reasoning models that share the response budget. Default: `false`. |
497
522
  | `maxTokensField` | Use `max_completion_tokens` or `max_tokens` |
498
523
  | `requiresToolResultName` | Include `name` on tool result messages |
499
524
  | `requiresAssistantAfterToolResult` | Insert an assistant message before a user message after tool results |
@@ -518,7 +543,7 @@ Strict JSON-schema support currently includes OpenAI, Anthropic, capable Bedrock
518
543
 
519
544
  ### Catalog freshness and precedence
520
545
 
521
- Authenticated remote catalogs are cached in `models-store.json`. Atomic revalidates pi.dev catalogs with the stored ETag through `If-None-Match`; an empty `304 Not Modified` is success and retains the cached body while updating its check time. A newer bundled catalog wins over an older persisted overlay even when package file mtimes are misleading. Final visibility is built-ins, persisted/remote data subject to freshness, configured `.pi` then `.atomic` layers, and live provider catalogs/overrides. Provider failures retain the last usable provider-specific snapshot.
546
+ Authenticated remote catalogs are cached in `models-store.json`. Atomic revalidates pi.dev catalogs with the stored ETag through `If-None-Match`; an empty `304 Not Modified` is success and retains the cached body while updating its check time. A newer bundled catalog wins over an older persisted overlay even when package file mtimes are misleading. Final visibility is built-ins, persisted/remote data subject to freshness, the single active-agent `models.json` configuration, and live provider catalogs/overrides; Atomic does not merge project `.atomic`/`.pi` model files or a legacy agent-directory fallback. Provider failures retain the last usable provider-specific snapshot.
522
547
 
523
548
  Claude Opus 5 is present in the generated Anthropic and Amazon Bedrock catalogs. Its metadata enables adaptive thinking, including `xhigh` where advertised. Bedrock uses its generated inference-profile ID, prompt-caching and strict-tool metadata, and preserves provider/AWS validation errors. Custom entries must reproduce those capabilities honestly rather than copying a display name alone.
524
549
  `openrouter` uses `reasoning: { effort }`. `together` uses `reasoning: { enabled }` and also `reasoning_effort` when `supportsReasoningEffort` is enabled. `qwen` uses top-level `enable_thinking`. Use `qwen-chat-template` for local Qwen-compatible servers that require `chat_template_kwargs.enable_thinking` and `preserve_thinking`. Use `chat-template` for vLLM/Hugging Face chat templates that need configurable `chat_template_kwargs`, such as `chatTemplateKwargs: { "thinking": { "$var": "thinking.enabled" } }` for DeepSeek V3.x templates.
package/docs/providers.md CHANGED
@@ -5,6 +5,7 @@ Atomic supports subscription-based providers via OAuth and API-key providers via
5
5
  ## Table of Contents
6
6
 
7
7
  - [Subscriptions](#subscriptions)
8
+ - [Verify readiness before a session](#verify-readiness-before-a-session)
8
9
  - [API Keys](#api-keys)
9
10
  - [Auth File](#auth-file)
10
11
  - [Cloud Providers](#cloud-providers)
@@ -35,6 +36,12 @@ Use `/logout` to clear credentials. Logout immediately invalidates authenticatio
35
36
 
36
37
  A stored OAuth token is refreshed once fewer than **five minutes** of validity remain, rather than at expiry, so a long turn is not started on a credential that dies mid-request. The refresh runs inside the `auth.json` lock and re-checks the stored expiry after taking it, so concurrent sessions sharing one credential file — subagents, workflow stages, RPC children — refresh it once between them rather than once each, and a session that arrives after the rotation finds nothing to do. A token still outside the window is not touched.
37
38
 
39
+ ### Verify Readiness Before a Session
40
+
41
+ Run `atomic auth check --provider <provider>` to verify the effective credential a provider would use without starting a session. You can pass `--model <model>` instead, including a `provider/model` ID, when that is the value your automation already has. The command prints `ready`, `not_ready`, or `invalid`; `--json` adds the resolved provider when one is found, credential type, and reason for a non-ready result.
42
+
43
+ Checks refresh expired OAuth credentials by default through the ordinary locked `auth.json` path. Use `--no-refresh` for a read-only probe: it neither creates nor mutates an auth file and reads Atomic's primary `~/.atomic/agent/auth.json` plus legacy `~/.pi/agent/auth.json` paths with the normal precedence. Readiness output contains no credential material unless you explicitly ask for `--credentials` with `--provider` or an exact `--model` target. That opt-in treats stdout or the JSON `credentials` field as a credential export; it refuses an OAuth token with less than 30 minutes of life when `--no-refresh` prevents a refresh.
44
+
38
45
  ### OpenAI Codex
39
46
 
40
47
  - Requires ChatGPT Plus or Pro subscription
@@ -44,7 +51,7 @@ If the Codex backend reports that an OAuth/auth token was invalidated or revoked
44
51
 
45
52
  ### Codex Fast Mode
46
53
 
47
- Run `/fast` in interactive mode to enable OpenAI priority service tier separately for normal chat and workflow-stage sessions. The command is shown only when the current model scope includes a supported `openai/*` or `openai-codex/*` model. Workflow stages use the workflow setting, not the chat setting. When enabled for the active supported model, the UI appends `fast` after the model name in the chat footer and workflow stage model labels. Fast mode intentionally does not apply to `github-copilot/*`, Azure OpenAI, OpenRouter, or custom OpenAI-compatible providers. Use workflow fast mode deliberately because parallel workflow fan-out can multiply priority-tier usage.
54
+ Run `/fast` in interactive mode to enable OpenAI priority service tier separately for normal chat and workflow-stage sessions. The command is shown only when the current model scope includes a supported `openai/*` or `openai-codex/*` model. Workflow stages, nested `ctx.workflow(...)` stages, and subagents launched by those stages use the workflow setting, not the chat setting. Each fallback attempt is evaluated against its effective model, so an eligible fallback gets the tier and an ineligible provider does not. When enabled for the active supported model, the UI appends `fast` after the model name in the chat footer, workflow stage model labels, and stage-launched subagent results. Fast mode intentionally does not apply to `github-copilot/*`, Azure OpenAI, OpenRouter, or custom OpenAI-compatible providers. Use workflow fast mode deliberately because parallel workflow fan-out can multiply priority-tier usage.
48
55
 
49
56
  ### Claude Pro/Max
50
57
 
@@ -130,18 +137,22 @@ Remote pi.dev catalogs persist their ETag and are revalidated with `If-None-Matc
130
137
  | Hugging Face | `HF_TOKEN` | `huggingface` |
131
138
  | Fireworks | `FIREWORKS_API_KEY` | `fireworks` |
132
139
  | Together AI | `TOGETHER_API_KEY` | `together` |
140
+ | Baseten | `BASETEN_API_KEY` | `baseten` |
133
141
  | Kimi For Coding | `KIMI_API_KEY` | `kimi-coding` |
134
142
  | MiniMax | `MINIMAX_API_KEY` | `minimax` |
135
143
  | MiniMax (China) | `MINIMAX_CN_API_KEY` | `minimax-cn` |
136
144
  | Moonshot AI | `MOONSHOT_API_KEY` | `moonshotai` |
137
145
  | Moonshot AI (China) | `MOONSHOT_API_KEY` | `moonshotai-cn` |
138
- | Qwen Token Plan | `QWEN_TOKEN_PLAN_API_KEY` | `qwen-token-plan` |
146
+ | Qwen Token Plan (existing catalog) | `QWEN_TOKEN_PLAN_API_KEY` | `qwen-token-plan` |
147
+ | Qwen Token Plan (Individual) | `QWEN_TOKEN_PLAN_API_KEY` | `qwen-token-plan-individual` |
139
148
  | Qwen Token Plan (China) | `QWEN_TOKEN_PLAN_CN_API_KEY` | `qwen-token-plan-cn` |
140
149
  | Xiaomi MiMo | `XIAOMI_API_KEY` | `xiaomi` |
141
150
  | Xiaomi MiMo Token Plan (China) | `XIAOMI_TOKEN_PLAN_CN_API_KEY` | `xiaomi-token-plan-cn` |
142
151
  | Xiaomi MiMo Token Plan (Amsterdam) | `XIAOMI_TOKEN_PLAN_AMS_API_KEY` | `xiaomi-token-plan-ams` |
143
152
  | Xiaomi MiMo Token Plan (Singapore) | `XIAOMI_TOKEN_PLAN_SGP_API_KEY` | `xiaomi-token-plan-sgp` |
144
153
 
154
+ Baseten's built-in default is `zai-org/GLM-5.2`; its catalog supplies the provider-specific thinking levels. Qwen Token Plan Individual defaults to `qwen3.8-max` and uses the international `QWEN_TOKEN_PLAN_API_KEY` shared with the existing Qwen Token Plan provider.
155
+
145
156
  Reference for environment variables and `auth.json` keys: `findEnvKeys()` / `getEnvApiKey()` in the installed `@earendil-works/pi-ai` dependency (`node_modules/@earendil-works/pi-ai/dist/env-api-keys.d.ts`). The private provider map those functions use is in `node_modules/@earendil-works/pi-ai/dist/env-api-keys.js`; Atomic does not include a separate `packages/ai` source directory in this monorepo.
146
157
 
147
158
  #### Auth File
@@ -157,9 +168,11 @@ Store credentials in `~/.atomic/agent/auth.json`:
157
168
  "nvidia": { "type": "api_key", "key": "nvapi-..." },
158
169
  "google": { "type": "api_key", "key": "..." },
159
170
  "opencode": { "type": "api_key", "key": "..." },
171
+ "baseten": { "type": "api_key", "key": "..." },
160
172
  "opencode-go": { "type": "api_key", "key": "..." },
161
173
  "together": { "type": "api_key", "key": "..." },
162
174
  "qwen-token-plan": { "type": "api_key", "key": "sk-sp-..." },
175
+ "qwen-token-plan-individual": { "type": "api_key", "key": "sk-sp-..." },
163
176
  "qwen-token-plan-cn": { "type": "api_key", "key": "sk-sp-..." },
164
177
  "xiaomi": { "type": "api_key", "key": "..." },
165
178
  "xiaomi-token-plan-cn": { "type": "api_key", "key": "..." },
@@ -168,6 +181,11 @@ Store credentials in `~/.atomic/agent/auth.json`:
168
181
  }
169
182
  ```
170
183
 
184
+ `qwen-token-plan-individual` uses the same international endpoint and `QWEN_TOKEN_PLAN_API_KEY` as
185
+ `qwen-token-plan`, but limits the picker to the models documented for Individual subscriptions. The existing
186
+ provider keeps its broader catalog for backward compatibility. When using `auth.json`, store the credential
187
+ under the provider you select; an environment variable is shared by both international providers.
188
+
171
189
  The file is created with `0600` permissions (user read/write only). Auth file credentials take priority over environment variables.
172
190
 
173
191
  API-key credentials may include provider-scoped `env` values. They take precedence over process environment variables while resolving the credential key, provider/model headers, and provider configuration such as Cloudflare account IDs, Azure settings, Vertex project/location, Bedrock settings, cache retention, and `HTTP_PROXY`/`HTTPS_PROXY`:
@@ -108,7 +108,7 @@ Atomic ships with nine workflows you can run immediately. Use `/workflow list` t
108
108
  | `loop-until-done` | Iterate with a durable ledger until completion or bound exhaustion. | `/workflow loop-until-done prompt="Repair failures until the test suite passes"` |
109
109
  | `goal` | Autonomous work that needs a durable ledger, bounded sub-agent orchestration, receipts, and reviewer-gated completion. | `/workflow goal objective="Update the CLI docs, add one example, and validate the docs build"` |
110
110
  | `ralph` | Research-first autonomous work with prompt refinement, delegated implementation, and iterative multi-model review. | `/workflow ralph prompt="Implement specs/rate-limit.md and validate burst traffic"` |
111
- | `open-claude-design` | UI and design-system work with separate generate and feedback chains and a live `preview.html`. | `/workflow open-claude-design prompt="Refresh the settings page hierarchy as a page"` |
111
+ | `open-claude-design` | UI and design-system work with separate generate and feedback passes and a live `preview.html`. | `/workflow open-claude-design prompt="Refresh the settings page hierarchy as a page"` |
112
112
 
113
113
  <p align="center"><img src="images/workflow-list.png" alt="Workflow List" width="600" /></p>
114
114
 
@@ -227,10 +227,10 @@ Atomic loads context files at startup. Add an `AGENTS.md` file to tell it how to
227
227
 
228
228
  Atomic loads:
229
229
 
230
- - `~/.atomic/agent/AGENTS.md` for global instructions
231
- - `AGENTS.md` or `CLAUDE.md` from parent directories and the current directory
230
+ - `~/.atomic/agent/AGENTS.override.md`, `AGENTS.md`, or `CLAUDE.md` for global instructions (legacy `~/.pi/agent/` also works)
231
+ - `AGENTS.override.md`, `AGENTS.md`, or `CLAUDE.md` from parent directories and the current directory
232
232
 
233
- Restart Atomic, or run `/reload`, after changing context files.
233
+ An `AGENTS.override.md` file replaces the other context files in its directory. Restart Atomic, or run `/reload`, after changing context files.
234
234
 
235
235
  ## Common things to try
236
236
 
@@ -243,7 +243,7 @@ atomic @README.md "Summarize this"
243
243
  atomic @src/app.ts @src/app.test.ts "Review these together"
244
244
  ```
245
245
 
246
- Images can be pasted with CTRL+V (ALT+V on Windows) or dragged into supported terminals.
246
+ Images can be pasted with native macOS Cmd+V, Ctrl+V (Alt+V on Windows), or dragged into supported terminals. Inside tmux on macOS, use `Ctrl+V` for reliable image paste; native `Cmd+V` depends on terminal forwarding. VS Code's terminal may forward the empty bracketed-paste route through tmux, while Ghostty may not forward its Kitty `super+v` route through tmux. When the clipboard has both text and an image, Ctrl+V prefers the image; Cmd+V may paste text or the image depending on how the terminal delivers the gesture.
247
247
 
248
248
  ### Run shell commands
249
249
 
package/docs/rpc.md CHANGED
@@ -526,7 +526,7 @@ While the command runs, Atomic emits ordered deltas correlated by the command `i
526
526
 
527
527
  `channel` is exactly `"stdout"` or `"stderr"`. Deltas preserve the order observed for that request; concurrent bash requests may interleave globally but never share IDs. Request ownership survives `new_session`, `switch_session`, `import_session`, fork, and clone while the command is running: later deltas still stream under the original ID, the replacement session is not contaminated, and exactly one ordinary `response` remains the terminal record for completion, cancellation, or error.
528
528
 
529
- If output was truncated, includes `fullOutputPath`:
529
+ If output was truncated, includes `fullOutputPath`. Persisted bash output lives in the owner- and session-scoped temp tree (`<tmpdir>/atomic-<uid>/<session-id>/`), not at the temp root — see [Tools](/tools#persisted-tool-output) for the layout, permissions, size cap, and retention:
530
530
  ```json
531
531
  {
532
532
  "type": "response",
@@ -537,11 +537,13 @@ If output was truncated, includes `fullOutputPath`:
537
537
  "exitCode": 0,
538
538
  "cancelled": false,
539
539
  "truncated": true,
540
- "fullOutputPath": "/tmp/atomic-bash-abc123.log"
540
+ "fullOutputPath": "/tmp/atomic-501/019fdf86-cf98-7327-8a73-21365028f6ae/atomic-bash-abc123.log"
541
541
  }
542
542
  }
543
543
  ```
544
544
 
545
+ `fullOutputPath` is `null` when the temp directory could not be created or the write was refused; treat it as absent rather than assuming a path exists.
546
+
545
547
  **How bash results reach the LLM:**
546
548
 
547
549
  The `bash` command executes immediately and returns a `BashResult`. Internally, a `BashExecutionMessage` is created and stored exactly once in the session where that request started, even if an RPC session replacement completes before the command. The message does NOT emit an event.
@@ -952,17 +954,21 @@ Emitted when a message begins and completes. The `message` field contains an `Ag
952
954
 
953
955
  ### message_update (Streaming)
954
956
 
955
- Emitted during streaming of assistant messages. Contains both the partial message and a streaming delta event.
957
+ Emitted during streaming of assistant messages. Carries only the streaming delta.
958
+
959
+ `message_update` deliberately omits any cumulative snapshot: there is no `message`
960
+ field, and `assistantMessageEvent` has no `partial`. `message_start` provides the
961
+ initial message, the deltas build it, and `message_end` provides the final
962
+ authoritative message. Repeating a snapshot on every frame would make the bytes
963
+ written per assistant turn grow with the square of its length.
956
964
 
957
965
  ```json
958
966
  {
959
967
  "type": "message_update",
960
- "message": {...},
961
968
  "assistantMessageEvent": {
962
969
  "type": "text_delta",
963
970
  "contentIndex": 0,
964
- "delta": "Hello ",
965
- "partial": {...}
971
+ "delta": "Hello "
966
972
  }
967
973
  }
968
974
  ```
@@ -986,10 +992,10 @@ The `assistantMessageEvent` field contains one of these delta types:
986
992
 
987
993
  Example streaming a text response:
988
994
  ```json
989
- {"type":"message_update","message":{...},"assistantMessageEvent":{"type":"text_start","contentIndex":0,"partial":{...}}}
990
- {"type":"message_update","message":{...},"assistantMessageEvent":{"type":"text_delta","contentIndex":0,"delta":"Hello","partial":{...}}}
991
- {"type":"message_update","message":{...},"assistantMessageEvent":{"type":"text_delta","contentIndex":0,"delta":" world","partial":{...}}}
992
- {"type":"message_update","message":{...},"assistantMessageEvent":{"type":"text_end","contentIndex":0,"content":"Hello world","partial":{...}}}
995
+ {"type":"message_update","assistantMessageEvent":{"type":"text_start","contentIndex":0}}
996
+ {"type":"message_update","assistantMessageEvent":{"type":"text_delta","contentIndex":0,"delta":"Hello"}}
997
+ {"type":"message_update","assistantMessageEvent":{"type":"text_delta","contentIndex":0,"delta":" world"}}
998
+ {"type":"message_update","assistantMessageEvent":{"type":"text_end","contentIndex":0,"content":"Hello world"}}
993
999
  ```
994
1000
 
995
1001
  ### tool_execution_start / tool_execution_update / tool_execution_end
@@ -1189,7 +1195,7 @@ Some `ExtensionUIContext` methods are not supported or degraded in RPC mode beca
1189
1195
  - `custom()` returns `undefined`
1190
1196
  - `setWorkingMessage()`, `setWorkingIndicator()`, `setFooter()`, `setHeader()`, `setEditorComponent()` are no-ops
1191
1197
  - `getEditorText()` returns `""`
1192
- - `setToolsExpanded()` and `getToolsExpanded()` maintain context-local expansion state; `getChatRenderSettings().toolOutputExpanded` reports the same value. This state is not sent through the client extension-UI protocol.
1198
+ - `setToolsExpanded()` and `getToolsExpanded()` maintain context-local expansion state; `getChatRenderSettings().toolOutputExpanded` reports the same value. A same-value `setToolsExpanded()` call is a no-op and does not request a custom-UI render. This state is not sent through the client extension-UI protocol.
1193
1199
  - `pasteToEditor()` delegates to `setEditorText()` (no paste/collapse handling)
1194
1200
  - `getAllThemes()` returns `[]`
1195
1201
  - `getTheme()` returns `undefined`
@@ -1459,7 +1465,7 @@ The `content` field can be a string or an array of `TextContent`/`ImageContent`
1459
1465
  }
1460
1466
  ```
1461
1467
 
1462
- Stop reasons: `"stop"`, `"length"`, `"toolUse"`, `"error"`, `"aborted"`. A partial message inside a `message_update` event carries `"pending"` until the terminal event replaces it, so a client that switches on the reason needs that case; a completed message never carries it.
1468
+ Stop reasons: `"stop"`, `"length"`, `"toolUse"`, `"error"`, `"aborted"`. A streaming message carries `"pending"` until the terminal event replaces it, so a client that switches on the reason needs that case; a completed message never carries it. On the wire the pending reason appears on the `message_start` message — `message_update` frames carry no message at all — and `message_end` carries the terminal reason.
1463
1469
 
1464
1470
  ### ToolResultMessage
1465
1471
 
package/docs/sdk.md CHANGED
@@ -78,6 +78,24 @@ Atomic does not require package install scripts. If you want to disable dependen
78
78
 
79
79
  The SDK is included in the main package. No separate SDK package is needed.
80
80
 
81
+ ## Experimental remote sessions
82
+
83
+ `@bastani/atomic/client` is an experimental entrypoint for upstream remote protocol sessions. It exports `RemoteSession` plus transcript projection helpers. Pass it a connected `PiClient` from `@earendil-works/pi-client`, then use `RemoteSession.open()` or `RemoteSession.create()` to own one remote session.
84
+
85
+ `RemoteSession` and Atomic's isolated interactive engine deliberately **coexist**; neither adapts the other. `RemoteSession` owns the `pi-client`/`pi-protocol` transport, its `SessionLease`, the leased `SessionSnapshot`, and the transcript projection used by an external protocol client. The isolated engine owns Atomic's in-process host facade, child-process JSONL RPC engine, interactive rendering, custom UI, and engine recovery. The client entrypoint has no `atomic client` CLI command and does not start or control the local interactive engine.
86
+
87
+ `RemoteSession.sessions` is a durable catalog of `SessionMetadata`. That is enough for listing and selecting stored sessions, but not for Atomic consumers that need runtime phase, model, thinking level, attachment, or lock state. Those consumers need the `SessionSnapshot` from an acquired lease; `RemoteSession.snapshot` exposes the current leased snapshot.
88
+
89
+ This boundary is intentional. A bridge would join two different protocols and would risk routing isolated-engine teardown through the host facade's unbounded cooperative abort. Keep the surfaces separate until a future upstream `RemoteSession` change supplies an engine-aware/server contract with teardown semantics that can preserve Atomic's recovery guarantee. The API may change without notice while it remains experimental.
90
+
91
+ ## Experimental Harness factory
92
+
93
+ The package root also exports `createCodingAgentHarness()` for applications that provide a pi-agent-core `ExecutionEnv`. It creates a Harness with Atomic's six coding tools: `read`, `bash`, `edit`, `write`, `find`, and `search`.
94
+
95
+ The factory routes the primary operations for the first five tools through the supplied execution environment, including directory-tree reads. URL reads use the session id for cache scope, fetch through the process network, and do not persist host-local artifacts because the factory has no local session directory. `search` is fully local; read and edit still use local path-variant probes and notebook projection, read also uses local archive, SQLite, and internal-resource selectors, write retains local generated-file, shebang, conflict, and resource helpers, and bash validates its cwd locally and uses Atomic's local temp storage for overflow output.
96
+
97
+ The factory requires `ExecutionEnv.renameFile()` and does not add a fallback filesystem implementation.
98
+
81
99
  ## Core Concepts
82
100
 
83
101
  ### createAgentSession()
@@ -377,6 +395,16 @@ session.subscribe((event) => {
377
395
  });
378
396
  ```
379
397
 
398
+ A subscriber that rebuilds the assistant message from these deltas must
399
+ accumulate them into its own message object. `message_start` reports the
400
+ message the model is about to stream, but an in-process subscriber receives the
401
+ provider's live partial rather than a snapshot of it, and the provider keeps
402
+ appending to that same object as the stream runs. Appending a delta to it adds
403
+ text the provider already added. A subscriber that attaches part-way through a
404
+ turn missed the deltas that came before it and can seed itself from
405
+ `session.agent.state.streamingMessage`, which holds the message currently being
406
+ streamed, if any.
407
+
380
408
  ## Options Reference
381
409
 
382
410
  ### Directories
@@ -399,7 +427,7 @@ Atomic reads primary `.atomic` locations first and legacy `.pi` locations for co
399
427
  - `.atomic/skills/`, then legacy `.pi/skills/`
400
428
  - `.agents/skills/` in `cwd` and ancestor directories (up to git repo root, or filesystem root when not in a repo)
401
429
  - Project prompts (`.atomic/prompts/`, then legacy `.pi/prompts/`)
402
- - Context files (`AGENTS.md` walking up from cwd)
430
+ - Context files (`AGENTS.override.md`, `AGENTS.md`, or `CLAUDE.md` walking up from cwd)
403
431
  - Session directory naming
404
432
 
405
433
  `agentDir` is used by `DefaultResourceLoader` for:
@@ -408,7 +436,7 @@ Atomic reads primary `.atomic` locations first and legacy `.pi` locations for co
408
436
  - `skills/` under `agentDir` (for example `~/.atomic/agent/skills/`; legacy `~/.pi/agent/skills/` is also considered by default)
409
437
  - `~/.agents/skills/`
410
438
  - Global prompts (`prompts/`)
411
- - Global context file (`AGENTS.md`)
439
+ - Global context files (`AGENTS.override.md`, `AGENTS.md`, or `CLAUDE.md` under `agentDir`)
412
440
  - Settings (`settings.json`)
413
441
  - Custom models (`models.json`)
414
442
  - Credentials (`auth.json`)
@@ -459,7 +487,7 @@ If no model is provided:
459
487
 
460
488
  ### API Keys and OAuth
461
489
 
462
- `ModelRuntime` is the asynchronous SDK engine for provider composition, credentials, model catalogs, and requests. `ModelRegistry` remains a thin synchronous compatibility facade for extensions; new SDK integrations should pass `modelRuntime` to `createAgentSession`.
490
+ `ModelRuntime` is the asynchronous SDK engine for provider composition, credentials, model catalogs, and requests. `ModelRegistry` remains a thin compatibility facade for extensions; `await modelRegistry.complete(model, context, options)` routes a request through its runtime with the resolved provider and auth. New SDK integrations should pass `modelRuntime` to `createAgentSession` and use `modelRuntime.complete()` directly when they issue standalone requests.
463
491
 
464
492
  Credential resolution combines runtime API-key overrides, stored `auth.json` credentials, environment variables, and the active `models.json` provider configuration. OAuth acquisition is provider-owned and runs through `ModelRuntime.login()`.
465
493
 
@@ -474,8 +502,12 @@ const { session } = await createAgentSession({
474
502
  modelRuntime,
475
503
  });
476
504
 
477
- // Runtime API key override (not persisted to disk)
478
- await modelRuntime.setRuntimeApiKey("anthropic", "sk-my-temp-key");
505
+ // Runtime API key override (not persisted to disk). Setting the key updates
506
+ // auth state; refresh the provider explicitly when its catalog must be current.
507
+ const providerId = "anthropic";
508
+ const authController = new AbortController();
509
+ await modelRuntime.setRuntimeApiKey(providerId, "sk-my-temp-key", { signal: authController.signal });
510
+ await modelRuntime.refresh({ providers: [providerId], signal: authController.signal });
479
511
 
480
512
  // Custom credential and model configuration locations
481
513
  const customRuntime = await ModelRuntime.create({
@@ -1009,9 +1041,13 @@ import {
1009
1041
  const authStorage = AuthStorage.create("/custom/agent/auth.json");
1010
1042
  const modelRuntime = await ModelRuntime.create({ credentials: authStorage, modelsPath: null });
1011
1043
 
1012
- // Runtime API key override (not persisted)
1044
+ // Runtime API key override (not persisted). setRuntimeApiKey updates auth state;
1045
+ // the scoped refresh updates that provider's catalog.
1013
1046
  if (process.env.MY_KEY) {
1014
- await modelRuntime.setRuntimeApiKey("anthropic", process.env.MY_KEY);
1047
+ const providerId = "anthropic";
1048
+ const authController = new AbortController();
1049
+ await modelRuntime.setRuntimeApiKey(providerId, process.env.MY_KEY, { signal: authController.signal });
1050
+ await modelRuntime.refresh({ providers: [providerId], signal: authController.signal });
1015
1051
  }
1016
1052
 
1017
1053
  // Inline tool
package/docs/security.md CHANGED
@@ -9,7 +9,7 @@ Project trust controls whether Atomic loads project-local settings, resources, p
9
9
  Atomic considers a project to have trust inputs when it finds any of these from the current working directory:
10
10
 
11
11
  - `.atomic/` (or legacy `.pi/`) in the current directory
12
- - `AGENTS.md` or `CLAUDE.md` in the current directory or an ancestor directory
12
+ - `AGENTS.override.md`, `AGENTS.md`, or `CLAUDE.md` in the current directory or an ancestor directory
13
13
  - `.agents/skills` in the current directory or an ancestor directory
14
14
 
15
15
  When an interactive session starts in a project with configs in `.atomic`/`.pi`, project-local context files, or `.agents/skills` and no saved decision for the current directory or a parent directory, Atomic follows `defaultProjectTrust` from global settings. The default value is `"ask"`, which asks whether to trust the project when UI is available. Saved decisions are stored by canonical directory in `~/.atomic/agent/trust.json`, and the closest saved decision on the current or parent path applies before the global default.
@@ -21,7 +21,7 @@ Trusting a project allows Atomic to load trust-gated project inputs, including:
21
21
  - missing project packages configured through project settings
22
22
  - project-local extensions and project package-managed extensions
23
23
 
24
- Declining trust skips protected resources. Atomic also skips project-local `AGENTS.md` and `CLAUDE.md` context-file discovery while the project is untrusted; global context and explicitly supplied CLI resources remain available. Before trust is resolved, Atomic only loads user/global extensions and explicit CLI `-e` package-level extensions so those trusted extensions can handle the `project_trust` event; the first extension that returns a yes/no decision owns the decision. When `-e <dir>` discovers project-local resources borrowed from that directory's `.atomic` or legacy `.pi` config, or from `.agents/skills`, Atomic resolves trust for that extension source before loading those borrowed resources, because borrowed extensions and workflows can execute code with the Atomic process permissions.
24
+ Declining trust skips protected resources. Atomic also skips project-local `AGENTS.override.md`, `AGENTS.md`, and `CLAUDE.md` context-file discovery while the project is untrusted; global context and explicitly supplied CLI resources remain available. Before trust is resolved, Atomic only loads user/global extensions and explicit CLI `-e` package-level extensions so those trusted extensions can handle the `project_trust` event; the first extension that returns a yes/no decision owns the decision. When `-e <dir>` discovers project-local resources borrowed from that directory's `.atomic` or legacy `.pi` config, or from `.agents/skills`, Atomic resolves trust for that extension source before loading those borrowed resources, because borrowed extensions and workflows can execute code with the Atomic process permissions.
25
25
 
26
26
  Non-interactive modes (`-p`, `--mode json`, and `--mode rpc`) do not show a trust prompt. Without an applicable saved trust decision, `defaultProjectTrust: "ask"` and `"never"` ignore such resources, while `"always"` trusts them. Use `--approve`/`-a` or `--no-approve`/`-na` to override project trust for one run.
27
27
 
@@ -53,18 +53,18 @@ If you bind-mount a host workspace read/write, writes from inside the container
53
53
 
54
54
  ## Credential Export
55
55
 
56
- `atomic auth print-api-key` and `atomic auth print-bearer-token` are the only commands that emit a stored credential. They exist so an external client can reuse the credential you already configured, rather than making you copy it out of `auth.json` by hand.
56
+ `atomic auth print-api-key`, `atomic auth print-bearer-token`, and the explicit `atomic auth check --credentials` form can emit a stored or resolved credential. They let an external client reuse authentication you already configured instead of making you copy a value from `auth.json`. `atomic auth check` without `--credentials` stays status-only.
57
57
 
58
- What the commands guarantee:
58
+ What credential-export forms guarantee:
59
59
 
60
- - **stdout carries the credential or nothing.** Warnings, provider selection, refresh notices, and even `atomic auth --help` go to stderr, and stdout is empty on every non-zero exit but one. `KEY=$(atomic auth print-api-key --model gpt-5.5)` cannot capture a diagnostic instead of a key. The rule runs both ways: once the credential is on stdout the command has succeeded, so a stream that then fails to drain is reported on stderr and the exit code stays `0`. The single exception is exit `9`: if the stream failed part-way through the payload, those bytes are already gone and stdout cannot be made empty, so the command says so rather than reporting a truncated secret as a whole one. Every other non-zero exit leaves stdout empty, which is what makes the exit code safe to branch on.
61
- - **No file or clipboard sink.** There is no `--output` flag. `--provider` and `--model` are the only options either subcommand accepts, checked as an allowlist: any other parsed flag, including `--export <path>` and `--session-dir <path>`, is a usage error. If you want the value in a file, you redirect it yourself and own that decision.
62
- - **No ambient model.** `--model` is required, so the command cannot emit a credential for a model you did not name.
63
- - **A failed refresh never strands you.** If the OAuth refresh itself fails, the command exits `5` and leaves the stored credential exactly as it was. Other OAuth failures a token that still expires too soon after a successful refresh, or an auth derivation failure that may follow a rotation — exit `6` and `7` and make no claim about the stored credential, rather than asserting a rollback nothing verified.
60
+ - **A credential reaches stdout only through an explicit export.** Warnings, provider selection, refresh notices, and even `atomic auth --help` go to stderr. A plain `KEY=$(atomic auth check --provider openai --credentials)` gets a credential only on success; a non-ready or invalid check leaves stdout empty and reports status on stderr. With `--json`, a failed check returns JSON status without a credential. Once the credential reaches stdout the command has succeeded, so a stream that then fails to drain is reported on stderr and the exit code stays `0`. The single exception is exit `9`: if the stream failed part-way through the payload, those bytes are already gone and stdout cannot be made empty, so the command says so rather than reporting a truncated secret as a whole one. Other **raw** credential-export failures leave stdout empty; a non-zero JSON check result carries status only, never a credential.
61
+ - **No file or clipboard sink.** There is no `--output` flag. The print subcommands allow only `--provider` and `--model`; an auth check must name a provider or exact model before `--credentials` can emit anything. A fuzzy model match cannot select a credential for export. If you want the value in a file, you redirect it yourself and own that decision.
62
+ - **No ambient target.** The print subcommands require `--model`; an exporting auth check requires `--provider` or an exact `--model`, so no export can use an unnamed current session model.
63
+ - **Useful OAuth lifetime.** An auth-check export needs an OAuth token with at least 30 minutes remaining. Its normal path can refresh the token; `--no-refresh` makes no auth-file mutation and refuses a shorter-lived token. `print-bearer-token` applies the same floor and uses exit `5` only for a refresh failure that leaves the stored credential untouched.
64
64
  - **The value is not loggable in transit.** Internally the credential is carried in a wrapper that throws if anything tries to interpolate, serialize, or inspect it, so it cannot reach a log line, a session transcript, or an error message. The wrapper is tested under both Node and Bun, since the published binary is Bun-compiled and `Bun.inspect` is a different formatter.
65
- - **One egress, enumerated.** A single function in `src/cli/credential-print.ts` opens the wrapper and writes to stdout; nothing else in the source tree can read a credential out of it. A test walks every file under `packages/coding-agent/src` and lists *every* call that puts a non-literal value on the real stdout, so a new one has to be added to that list and reviewed. The test carries its own negative control: it feeds the scanner two planted egress modules and fails if either goes unreported. No RPC response type carries a credential either — that is asserted against `src/modes/rpc/rpc-types.ts` directly, because the RPC login reply once echoed the API key the host had just typed in.
65
+ - **One egress, enumerated.** `credentialPayload` is the only source function that opens the wrapper, and it returns one payload only to `emitCredential`, which performs the guarded real-stdout write. Tests enumerate both allowed `Secret.take()` call sites and *every* call that puts a non-literal value on real stdout, so a new one has to be added to the list and reviewed. The tests carry negative controls for a planted third `take()` call and two planted egress modules. No RPC response type carries a credential either — that is asserted against `src/modes/rpc/rpc-types.ts` directly, because the RPC login reply once echoed the API key the host had just typed in.
66
66
 
67
- What they do **not** do: once the credential is on stdout it is ordinary text in your shell, your pipeline, and possibly your shell history and process listing. Prefer `print-bearer-token`, whose output expires, over a long-lived API key. Do not embed either command in a script that logs its own output.
67
+ What they do **not** do: once the credential is on stdout it is ordinary text in your shell, your pipeline, and possibly your shell history and process listing. Prefer `print-bearer-token`, whose output expires, over a long-lived API key. Do not embed any credential-export form in a script that logs its own output.
68
68
 
69
69
  ## Reporting Security Issues
70
70
 
package/docs/sessions.md CHANGED
@@ -6,6 +6,8 @@ Atomic saves conversations as sessions so you can continue work, branch from ear
6
6
 
7
7
  Sessions auto-save to `~/.atomic/agent/sessions/`, organized by working directory. Each session is a JSONL file with a tree structure.
8
8
 
9
+ The session picker also scans linked project directories inside this default store, so project aliases or relocated session folders remain discoverable through `/resume` and `atomic -r`.
10
+
9
11
  ```bash
10
12
  atomic -c # Continue most recent session
11
13
  atomic -r # Browse and select from past sessions