@bastani/atomic 0.9.0-alpha.1 → 0.9.0-alpha.3

package/CHANGELOG.md

@@ -2,6 +2,35 @@
 
 ## [Unreleased]
 
+## [0.9.0-alpha.3] - 2026-06-21
+
+### Fixed
+
+- Fixed the repository `publish-release` workflow's final Publish-run verifier to poll GitHub Actions run JSON until a terminal state instead of treating a still-`in_progress` publish run as a failed prerelease.
+
+## [0.9.0-alpha.2] - 2026-06-21
+
+### Breaking Changes
+
+- Removed the Atomic-specific `bashPolicy` command-level allow/deny API from `createAgentSession()`, `AgentSession` internals, SDK exports, and the built-in `bash` tool so shell execution matches upstream pi behavior. Use `tools`/`excludedTools`/`noTools` to expose or hide `bash`, and use a sandbox or custom tool for command allowlisting.
+
+### Added
+
+- Added upstream Pi v0.79.9 chat-template thinking compatibility to Atomic custom-model/provider configuration, including `compat.thinkingFormat: "chat-template"` and `compat.chatTemplateKwargs` schema/merge support for OpenAI-compatible vLLM/Hugging Face chat templates.
+
+### Changed
+
+- Aligned Atomic's bundled upstream Pi runtime libraries (`@earendil-works/pi-agent-core`, `@earendil-works/pi-ai`, and `@earendil-works/pi-tui`) with `^0.79.9`, picking up dependency-covered GLM-5.2 provider metadata, GitHub Copilot model-availability filtering, Mistral prompt caching, selective base entry points, OpenRouter Fusion, Markdown streaming code-fence stability, and runtime dependency fixes.
+
+### Fixed
+
+- Fixed same-directory session/resource reloads to reuse imported extension modules while still creating fresh extension instances and lifecycle events, reducing avoidable reload work without making extension contexts stale.
+- Fixed deep session branch path/context traversal to build paths linearly instead of using repeated front-insertion on long branches.
+- Fixed fuzzy `edit` replacements to preserve untouched original line blocks and produce patches that apply to the original file instead of rewriting the entire file through normalized text.
+- Fixed legacy WSL `C:\Windows\System32\bash.exe`/`Sysnative\bash.exe` command execution to send scripts over stdin with `bash -s`, preserving shell-variable expansion in the target bash.
+- Fixed `/model` selector search ranking so exact provider-prefixed queries (for example `openai/gpt`) rank ahead of proxy-provider model IDs such as `openrouter/openai/gpt-*`, while autocomplete keeps the broader inherited search behavior.
+- Fixed successful overflow-sized assistant responses to trigger compaction without retrying or dropping the completed assistant message.
+
 ## [0.9.0-alpha.1] - 2026-06-20
 
 ### Added

package/dist/builtin/cursor/CHANGELOG.md

@@ -2,6 +2,12 @@
 
 ## [Unreleased]
 
+## [0.9.0-alpha.2] - 2026-06-21
+
+### Changed
+
+- Published a synchronized Atomic 0.9.0-alpha.2 prerelease; no functional Cursor provider changes were made after 0.9.0-alpha.1.
+
 ## [0.9.0-alpha.1] - 2026-06-20
 
 ### Changed

package/dist/builtin/cursor/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@bastani/cursor",
-  "version": "0.9.0-alpha.1",
+  "version": "0.9.0-alpha.3",
   "private": true,
   "description": "Experimental first-party Atomic extension for Cursor OAuth, model discovery, and streaming provider registration.",
   "contributors": [
@@ -40,7 +40,7 @@
     }
   },
   "dependencies": {
-    "@bastani/atomic-natives": "0.9.0-alpha.1",
+    "@bastani/atomic-natives": "0.9.0-alpha.3",
     "@bufbuild/protobuf": "^2.0.0"
   }
 }

package/dist/builtin/intercom/CHANGELOG.md

@@ -4,6 +4,12 @@ All notable changes to the `pi-intercom` extension will be documented in this fi
 
 ## [Unreleased]
 
+## [0.9.0-alpha.2] - 2026-06-21
+
+### Changed
+
+- Aligned the intercom extension peer dependency with upstream pi TUI `^0.79.9` so coordination overlays and rendered message surfaces inherit the latest shared TUI compatibility fixes, including stabilized partial code-fence rendering during Markdown streaming; no intercom extension source changes were needed for this dependency-covered sync.
+
 ## [0.9.0-alpha.1] - 2026-06-20
 
 ### Changed

package/dist/builtin/intercom/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@bastani/intercom",
-  "version": "0.9.0-alpha.1",
+  "version": "0.9.0-alpha.3",
   "private": true,
   "description": "Atomic extension providing a private coordination channel between parent and child agent sessions. Fork of: https://github.com/nicobailon/pi-intercom",
   "contributors": [
@@ -39,7 +39,7 @@
   },
   "peerDependencies": {
     "@bastani/atomic": "*",
-    "@earendil-works/pi-tui": "^0.79.7"
+    "@earendil-works/pi-tui": "^0.79.9"
   },
   "peerDependenciesMeta": {
     "@bastani/atomic": {

package/dist/builtin/mcp/CHANGELOG.md

@@ -7,6 +7,12 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ## [Unreleased]
 
+## [0.9.0-alpha.2] - 2026-06-21
+
+### Changed
+
+- Aligned the MCP extension peer dependencies with upstream pi AI/TUI `^0.79.9` so MCP-backed Atomic sessions inherit chat-template custom-provider thinking controls, GLM-5.2 provider metadata, GitHub Copilot model-availability filtering, Mistral prompt-cache accounting, Markdown streaming code-fence stability, and shared provider/TUI compatibility fixes; no MCP extension source changes were needed for this dependency-covered sync.
+
 ## [0.9.0-alpha.1] - 2026-06-20
 
 ### Fixed

package/dist/builtin/mcp/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@bastani/mcp",
-  "version": "0.9.0-alpha.1",
+  "version": "0.9.0-alpha.3",
   "private": true,
   "description": "Atomic extension that adapts MCP (Model Context Protocol) servers into the coding agent. Fork of: https://github.com/nicobailon/pi-mcp-adapter",
   "contributors": [
@@ -32,8 +32,8 @@
   },
   "peerDependencies": {
     "@bastani/atomic": "*",
-    "@earendil-works/pi-ai": "^0.79.7",
-    "@earendil-works/pi-tui": "^0.79.7",
+    "@earendil-works/pi-ai": "^0.79.9",
+    "@earendil-works/pi-tui": "^0.79.9",
     "zod": "^3.25.0 || ^4.0.0"
   },
   "peerDependenciesMeta": {

package/dist/builtin/subagents/CHANGELOG.md

@@ -2,6 +2,12 @@
 
 ## [Unreleased]
 
+## [0.9.0-alpha.2] - 2026-06-21
+
+### Changed
+
+- Aligned the subagents extension peer dependencies with upstream pi `^0.79.9` runtime packages (`@earendil-works/pi-agent-core`, `@earendil-works/pi-ai`, and `@earendil-works/pi-tui`) so child sessions inherit chat-template custom-provider thinking controls, GLM-5.2 provider metadata, GitHub Copilot model-availability filtering, Mistral prompt-cache accounting, Markdown streaming code-fence stability, and shared agent/TUI compatibility fixes; no subagents extension source changes were needed for this dependency-covered sync.
+
 ## [0.9.0-alpha.1] - 2026-06-20
 
 ### Added

package/dist/builtin/subagents/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@bastani/subagents",
-  "version": "0.9.0-alpha.1",
+  "version": "0.9.0-alpha.3",
   "private": true,
   "description": "Atomic extension for delegating tasks to subagents with chains, parallel execution, and TUI clarification. Fork of: https://github.com/nicobailon/pi-subagents",
   "contributors": [
@@ -38,9 +38,9 @@
   },
   "peerDependencies": {
     "@bastani/atomic": "*",
-    "@earendil-works/pi-agent-core": "^0.79.7",
-    "@earendil-works/pi-ai": "^0.79.7",
-    "@earendil-works/pi-tui": "^0.79.7"
+    "@earendil-works/pi-agent-core": "^0.79.9",
+    "@earendil-works/pi-ai": "^0.79.9",
+    "@earendil-works/pi-tui": "^0.79.9"
   },
   "peerDependenciesMeta": {
     "@bastani/atomic": {

package/dist/builtin/web-access/CHANGELOG.md

@@ -4,6 +4,12 @@ All notable changes to this project will be documented in this file.
 
 ## [Unreleased]
 
+## [0.9.0-alpha.2] - 2026-06-21
+
+### Changed
+
+- Aligned the web-access extension peer dependency with upstream pi TUI `^0.79.9` so web-access curator, summary review, and rendered Markdown surfaces inherit the latest shared TUI compatibility fixes, including stabilized partial code-fence rendering during streaming; no web-access extension source changes were needed for this dependency-covered sync.
+
 ## [0.9.0-alpha.1] - 2026-06-20
 
 ### Changed

package/dist/builtin/web-access/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@bastani/web-access",
-  "version": "0.9.0-alpha.1",
+  "version": "0.9.0-alpha.3",
   "private": true,
   "description": "Atomic extension for web search, URL fetching, GitHub repo cloning, PDF/video extraction. Fork of: https://github.com/nicobailon/pi-web-access",
   "contributors": [
@@ -31,7 +31,7 @@
   },
   "peerDependencies": {
     "@bastani/atomic": "*",
-    "@earendil-works/pi-tui": "^0.79.7"
+    "@earendil-works/pi-tui": "^0.79.9"
   },
   "peerDependenciesMeta": {
     "@bastani/atomic": {

package/dist/builtin/workflows/CHANGELOG.md

@@ -6,6 +6,25 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.1.0/),
 
 ## [Unreleased]
 
+## [0.9.0-alpha.3] - 2026-06-21
+
+### Added
+
+- Added a shared `prompt-refinement` stage to the builtin `ralph` and `goal` workflows. Both now run one `prompt-refinement` stage at the start that invokes the `prompt-engineer` skill (`/skill:prompt-engineer`) to sharpen the raw user request into a clearer, more actionable objective using the Workflow Best Practices prompt anatomy documented in `packages/coding-agent/docs/workflows.md` (`## Workflow Best Practices`). The refined request replaces the original as the operative objective for all downstream stages (research, orchestration, worker/review loops); the original request is preserved for traceability. `ralph` exposes `original_prompt` and `refined_prompt` outputs, and `goal` exposes `original_objective` (omitted when refinement left it unchanged) and records the original objective in the ledger and final report. The stage uses the same model chain as ralph's prompt-engineering stage (`promptEngineerModelConfig`).
+- Renamed the builtin `ralph` workflow's per-iteration `prompt-engineer-${iteration}` stage to `research-prompt-refinement-${iteration}` (`renderPromptEngineerPrompt` → `renderResearchPromptRefinementPrompt`). It now consumes the clarity-refined request as input and continues to transform it into a codebase/online research question for the research stage.
+
+## [0.9.0-alpha.2] - 2026-06-21
+
+### Breaking Changes
+
+- Replaced the removed `defineWorkflow(...).run(...).compile()` builder with the single `workflow({ name?, description, inputs, outputs, run })` authoring door. Authored workflows must import `workflow` from `@bastani/workflows`, import `Type` from `typebox`, provide an `outputs` map, and export the returned definition directly; `.compile()` and the builder types are no longer exported.
+- Removed the workflow stage/task/direct-mode `bashPolicy` option and schema so workflow-launched `bash` tools match upstream pi behavior. Use `tools`/`noTools` to expose or hide `bash`, custom tools for narrow operations, and an OS/container sandbox for command allowlisting.
+
+### Changed
+
+- Decomposed the foreground workflow executor behind an internal, host-injected `EngineRuntime.spawnStage(...)` chokepoint. Agent stages, task/chain/parallel primitives, nested workflow boundary stages, MCP stage scope setup/cleanup, continuation replay wiring, and graph-frontier tracking now live under the engine seams while preserving the existing run, resume, kill, HIL, worktree, and model-fallback behavior.
+- Aligned the workflows extension peer dependency with upstream pi TUI `^0.79.9` so workflow graph, custom UI, prompt-broker, and streamed Markdown surfaces inherit the latest shared TUI compatibility fixes, including stabilized partial code-fence rendering during streaming; no workflows extension source changes were needed for this dependency-covered sync.
+
 ## [0.9.0-alpha.1] - 2026-06-20
 
 ### Breaking Changes