@bastani/atomic 0.8.31-alpha.5 → 0.9.0-alpha.2

package/dist/builtin/subagents/src/agents/agents.ts

@@ -1,899 +1,26 @@
 /**
- * Agent discovery and configuration
+ * Agent discovery and configuration public surface.
  */
 
-import * as fs from "node:fs";
-import * as os from "node:os";
-import * as path from "node:path";
-import { fileURLToPath } from "node:url";
-import { CONFIG_DIR_NAME, getAgentConfigPaths, getEnvValue, getProjectConfigDirs } from "@bastani/atomic";
-import type { OutputMode } from "../shared/types.ts";
-import { shouldPreserveAgentExtraField } from "./agent-serializer.ts";
-import { parseChain, parseJsonChain } from "./chain-serializer.ts";
-import { mergeAgentsForScope } from "./agent-selection.ts";
-import { parseFrontmatter } from "./frontmatter.ts";
-import { buildRuntimeName, parsePackageName } from "./identity.ts";
+export {
+	defaultInheritProjectContext,
+	defaultInheritSkills,
+	defaultSystemPromptMode,
+} from "./agent-types.ts";
+export type {
+	AgentConfig,
+	AgentDefaultContext,
+	AgentScope,
+	AgentSource,
+	BuiltinAgentOverrideBase,
+	ChainConfig,
+	ChainDiscoveryDiagnostic,
+	ChainStepConfig,
+} from "./agent-types.ts";
+export {
+	buildBuiltinOverrideConfig,
+	removeBuiltinAgentOverride,
+	saveBuiltinAgentOverride,
+} from "./agent-overrides.ts";
+export { discoverAgents, discoverAgentsAll } from "./agent-discovery.ts";
 export { buildRuntimeName, frontmatterNameForConfig, parsePackageName } from "./identity.ts";
-
-export type AgentScope = "user" | "project" | "both";
-
-export type AgentSource = "builtin" | "user" | "project";
-type SystemPromptMode = "append" | "replace";
-export type AgentDefaultContext = "fresh" | "fork";
-
-export function defaultSystemPromptMode(name: string): SystemPromptMode {
-	return name === "delegate" ? "append" : "replace";
-}
-
-export function defaultInheritProjectContext(name: string): boolean {
-	return name === "delegate";
-}
-
-export function defaultInheritSkills(): boolean {
-	return false;
-}
-
-export interface BuiltinAgentOverrideBase {
-	model?: string;
-	fallbackModels?: string[];
-	fallbackThinkingLevels?: string[];
-	thinking?: string;
-	systemPromptMode: SystemPromptMode;
-	inheritProjectContext: boolean;
-	inheritSkills: boolean;
-	defaultContext?: AgentDefaultContext;
-	disabled?: boolean;
-	systemPrompt: string;
-	skills?: string[];
-	tools?: string[];
-	mcpDirectTools?: string[];
-}
-
-interface BuiltinAgentOverrideConfig {
-	model?: string | false;
-	fallbackModels?: string[] | false;
-	fallbackThinkingLevels?: string[] | false;
-	thinking?: string | false;
-	systemPromptMode?: SystemPromptMode;
-	inheritProjectContext?: boolean;
-	inheritSkills?: boolean;
-	defaultContext?: AgentDefaultContext | false;
-	disabled?: boolean;
-	systemPrompt?: string;
-	skills?: string[] | false;
-	tools?: string[] | false;
-}
-
-interface BuiltinAgentOverrideInfo {
-	scope: "user" | "project";
-	path: string;
-	base: BuiltinAgentOverrideBase;
-}
-
-export interface AgentConfig {
-	name: string;
-	localName?: string;
-	packageName?: string;
-	description: string;
-	tools?: string[];
-	mcpDirectTools?: string[];
-	model?: string;
-	fallbackModels?: string[];
-	fallbackThinkingLevels?: string[];
-	thinking?: string;
-	systemPromptMode: SystemPromptMode;
-	inheritProjectContext: boolean;
-	inheritSkills: boolean;
-	defaultContext?: AgentDefaultContext;
-	systemPrompt: string;
-	source: AgentSource;
-	filePath: string;
-	skills?: string[];
-	extensions?: string[];
-	output?: string;
-	defaultReads?: string[];
-	defaultProgress?: boolean;
-	interactive?: boolean;
-	maxSubagentDepth?: number;
-	disabled?: boolean;
-	extraFields?: Record<string, string>;
-	override?: BuiltinAgentOverrideInfo;
-}
-
-interface SubagentSettings {
-	overrides: Record<string, BuiltinAgentOverrideConfig>;
-	disableBuiltins?: boolean;
-}
-
-const EMPTY_SUBAGENT_SETTINGS: SubagentSettings = { overrides: {} };
-
-export interface ChainStepConfig {
-	agent?: string;
-	task?: string;
-	phase?: string;
-	label?: string;
-	as?: string;
-	outputSchema?: string | Record<string, unknown>;
-	output?: string | false;
-	outputMode?: OutputMode;
-	reads?: string[] | false;
-	model?: string;
-	skills?: string[] | false;
-	progress?: boolean;
-	parallel?: unknown;
-	expand?: unknown;
-	collect?: unknown;
-	concurrency?: number;
-	failFast?: boolean;
-	worktree?: boolean;
-}
-
-export interface ChainConfig {
-	name: string;
-	localName?: string;
-	packageName?: string;
-	description: string;
-	source: AgentSource;
-	filePath: string;
-	steps: ChainStepConfig[];
-	extraFields?: Record<string, string>;
-}
-
-export interface ChainDiscoveryDiagnostic {
-	source: "user" | "project";
-	filePath: string;
-	error: string;
-}
-
-interface AgentDiscoveryResult {
-	agents: AgentConfig[];
-	projectAgentsDir: string | null;
-}
-
-function getUserChainDir(): string {
-	return getAgentConfigPaths("chains")[0] ?? path.join(os.homedir(), CONFIG_DIR_NAME, "agent", "chains");
-}
-
-function getUserChainDirs(): string[] {
-	return getAgentConfigPaths("chains");
-}
-
-function getUserAgentDirs(): string[] {
-	return getAgentConfigPaths("agents");
-}
-
-function splitToolList(rawTools: string[] | undefined): { tools?: string[]; mcpDirectTools?: string[] } {
-	const mcpDirectTools: string[] = [];
-	const tools: string[] = [];
-	for (const tool of rawTools ?? []) {
-		if (tool.startsWith("mcp:")) {
-			mcpDirectTools.push(tool.slice(4));
-		} else {
-			tools.push(tool);
-		}
-	}
-	return {
-		...(tools.length > 0 ? { tools } : {}),
-		...(mcpDirectTools.length > 0 ? { mcpDirectTools } : {}),
-	};
-}
-
-function joinToolList(config: Pick<AgentConfig, "tools" | "mcpDirectTools">): string[] | undefined {
-	const joined = [
-		...(config.tools ?? []),
-		...(config.mcpDirectTools ?? []).map((tool) => `mcp:${tool}`),
-	];
-	return joined.length > 0 ? joined : undefined;
-}
-
-function arraysEqual(a: string[] | undefined, b: string[] | undefined): boolean {
-	if (!a && !b) return true;
-	if (!a || !b) return false;
-	if (a.length !== b.length) return false;
-	for (let i = 0; i < a.length; i++) {
-		if (a[i] !== b[i]) return false;
-	}
-	return true;
-}
-
-function cloneOverrideBase(agent: AgentConfig): BuiltinAgentOverrideBase {
-	return {
-		model: agent.model,
-		fallbackModels: agent.fallbackModels ? [...agent.fallbackModels] : undefined,
-		fallbackThinkingLevels: agent.fallbackThinkingLevels ? [...agent.fallbackThinkingLevels] : undefined,
-		thinking: agent.thinking,
-		systemPromptMode: agent.systemPromptMode,
-		inheritProjectContext: agent.inheritProjectContext,
-		inheritSkills: agent.inheritSkills,
-		defaultContext: agent.defaultContext,
-		disabled: agent.disabled,
-		systemPrompt: agent.systemPrompt,
-		skills: agent.skills ? [...agent.skills] : undefined,
-		tools: agent.tools ? [...agent.tools] : undefined,
-		mcpDirectTools: agent.mcpDirectTools ? [...agent.mcpDirectTools] : undefined,
-	};
-}
-
-function cloneOverrideValue(override: BuiltinAgentOverrideConfig): BuiltinAgentOverrideConfig {
-	return {
-		...(override.model !== undefined ? { model: override.model } : {}),
-		...(override.fallbackModels !== undefined
-			? { fallbackModels: override.fallbackModels === false ? false : [...override.fallbackModels] }
-			: {}),
-		...(override.fallbackThinkingLevels !== undefined
-			? { fallbackThinkingLevels: override.fallbackThinkingLevels === false ? false : [...override.fallbackThinkingLevels] }
-			: {}),
-		...(override.thinking !== undefined ? { thinking: override.thinking } : {}),
-		...(override.systemPromptMode !== undefined ? { systemPromptMode: override.systemPromptMode } : {}),
-		...(override.inheritProjectContext !== undefined ? { inheritProjectContext: override.inheritProjectContext } : {}),
-		...(override.inheritSkills !== undefined ? { inheritSkills: override.inheritSkills } : {}),
-		...(override.defaultContext !== undefined ? { defaultContext: override.defaultContext } : {}),
-		...(override.disabled !== undefined ? { disabled: override.disabled } : {}),
-		...(override.systemPrompt !== undefined ? { systemPrompt: override.systemPrompt } : {}),
-		...(override.skills !== undefined ? { skills: override.skills === false ? false : [...override.skills] } : {}),
-		...(override.tools !== undefined ? { tools: override.tools === false ? false : [...override.tools] } : {}),
-	};
-}
-
-function findNearestProjectRoot(cwd: string): string | null {
-	let currentDir = cwd;
-	while (true) {
-		if (getProjectConfigDirs(currentDir).some(isDirectory) || isDirectory(path.join(currentDir, ".agents"))) {
-			return currentDir;
-		}
-
-		const parentDir = path.dirname(currentDir);
-		if (parentDir === currentDir) return null;
-		currentDir = parentDir;
-	}
-}
-
-function getUserAgentSettingsPath(): string {
-	return getAgentConfigPaths("settings.json")[0] ?? path.join(os.homedir(), CONFIG_DIR_NAME, "agent", "settings.json");
-}
-
-function getUserAgentSettingsPaths(): string[] {
-	return getAgentConfigPaths("settings.json");
-}
-
-function getProjectAgentSettingsPath(cwd: string): string | null {
-	const projectRoot = findNearestProjectRoot(cwd);
-	return projectRoot ? path.join(getProjectConfigDirs(projectRoot)[0]!, "settings.json") : null;
-}
-
-function getProjectAgentSettingsPaths(cwd: string): string[] {
-	const projectRoot = findNearestProjectRoot(cwd);
-	return projectRoot ? getProjectConfigDirs(projectRoot).map((dir) => path.join(dir, "settings.json")) : [];
-}
-
-function readSettingsFileStrict(filePath: string): Record<string, unknown> {
-	if (!fs.existsSync(filePath)) return {};
-	let raw: string;
-	try {
-		raw = fs.readFileSync(filePath, "utf-8");
-	} catch (error) {
-		const message = error instanceof Error ? error.message : String(error);
-		throw new Error(`Failed to read settings file '${filePath}': ${message}`, { cause: error });
-	}
-
-	let parsed: unknown;
-	try {
-		parsed = JSON.parse(raw);
-	} catch (error) {
-		const message = error instanceof Error ? error.message : String(error);
-		throw new Error(`Failed to parse settings file '${filePath}': ${message}`, { cause: error });
-	}
-	if (!parsed || typeof parsed !== "object" || Array.isArray(parsed)) {
-		throw new Error(`Settings file '${filePath}' must contain a JSON object.`);
-	}
-	return parsed as Record<string, unknown>;
-}
-
-function writeSettingsFile(filePath: string, settings: Record<string, unknown>): void {
-	fs.mkdirSync(path.dirname(filePath), { recursive: true });
-	fs.writeFileSync(filePath, JSON.stringify(settings, null, 2) + "\n", "utf-8");
-}
-
-function parseOverrideStringArrayOrFalse(
-	value: unknown,
-	meta: { filePath: string; name: string; field: string },
-): string[] | false | undefined {
-	if (value === undefined) return undefined;
-	if (value === false) return false;
-	if (!Array.isArray(value)) {
-		throw new Error(`Builtin override '${meta.name}' in '${meta.filePath}' has invalid '${meta.field}'; expected an array of strings or false.`);
-	}
-
-	const items: string[] = [];
-	for (const item of value) {
-		if (typeof item !== "string") {
-			throw new Error(`Builtin override '${meta.name}' in '${meta.filePath}' has invalid '${meta.field}'; expected an array of strings or false.`);
-		}
-		const trimmed = item.trim();
-		if (trimmed) items.push(trimmed);
-	}
-	return items;
-}
-
-function parseBuiltinOverrideEntry(
-	name: string,
-	value: unknown,
-	filePath: string,
-): BuiltinAgentOverrideConfig | undefined {
-	if (!value || typeof value !== "object" || Array.isArray(value)) {
-		throw new Error(`Builtin override '${name}' in '${filePath}' must be an object.`);
-	}
-
-	const input = value as Record<string, unknown>;
-	const override: BuiltinAgentOverrideConfig = {};
-
-	if ("model" in input) {
-		if (typeof input.model === "string" || input.model === false) override.model = input.model;
-		else throw new Error(`Builtin override '${name}' in '${filePath}' has invalid 'model'; expected a string or false.`);
-	}
-
-	if ("thinking" in input) {
-		if (typeof input.thinking === "string" || input.thinking === false) override.thinking = input.thinking;
-		else throw new Error(`Builtin override '${name}' in '${filePath}' has invalid 'thinking'; expected a string or false.`);
-	}
-
-	if ("systemPromptMode" in input) {
-		if (input.systemPromptMode === "append" || input.systemPromptMode === "replace") {
-			override.systemPromptMode = input.systemPromptMode;
-		} else {
-			throw new Error(`Builtin override '${name}' in '${filePath}' has invalid 'systemPromptMode'; expected 'append' or 'replace'.`);
-		}
-	}
-
-	if ("inheritProjectContext" in input) {
-		if (typeof input.inheritProjectContext === "boolean") {
-			override.inheritProjectContext = input.inheritProjectContext;
-		} else {
-			throw new Error(`Builtin override '${name}' in '${filePath}' has invalid 'inheritProjectContext'; expected a boolean.`);
-		}
-	}
-
-	if ("inheritSkills" in input) {
-		if (typeof input.inheritSkills === "boolean") {
-			override.inheritSkills = input.inheritSkills;
-		} else {
-			throw new Error(`Builtin override '${name}' in '${filePath}' has invalid 'inheritSkills'; expected a boolean.`);
-		}
-	}
-
-	if ("defaultContext" in input) {
-		if (input.defaultContext === "fresh" || input.defaultContext === "fork" || input.defaultContext === false) {
-			override.defaultContext = input.defaultContext;
-		} else {
-			throw new Error(`Builtin override '${name}' in '${filePath}' has invalid 'defaultContext'; expected 'fresh', 'fork', or false.`);
-		}
-	}
-
-	if ("disabled" in input) {
-		if (typeof input.disabled === "boolean") {
-			override.disabled = input.disabled;
-		} else {
-			throw new Error(`Builtin override '${name}' in '${filePath}' has invalid 'disabled'; expected a boolean.`);
-		}
-	}
-
-	if ("systemPrompt" in input) {
-		if (typeof input.systemPrompt === "string") override.systemPrompt = input.systemPrompt;
-		else throw new Error(`Builtin override '${name}' in '${filePath}' has invalid 'systemPrompt'; expected a string.`);
-	}
-
-	const fallbackModels = parseOverrideStringArrayOrFalse(input.fallbackModels, { filePath, name, field: "fallbackModels" });
-	if (fallbackModels !== undefined) override.fallbackModels = fallbackModels;
-
-	const fallbackThinkingLevels = parseOverrideStringArrayOrFalse(input.fallbackThinkingLevels, { filePath, name, field: "fallbackThinkingLevels" });
-	if (fallbackThinkingLevels !== undefined) override.fallbackThinkingLevels = fallbackThinkingLevels;
-
-	const skills = parseOverrideStringArrayOrFalse(input.skills, { filePath, name, field: "skills" });
-	if (skills !== undefined) override.skills = skills;
-
-	const tools = parseOverrideStringArrayOrFalse(input.tools, { filePath, name, field: "tools" });
-	if (tools !== undefined) override.tools = tools;
-
-	return Object.keys(override).length > 0 ? override : undefined;
-}
-
-function readSubagentSettings(filePath: string | null): SubagentSettings {
-	if (!filePath) return EMPTY_SUBAGENT_SETTINGS;
-	const settings = readSettingsFileStrict(filePath);
-	const subagents = settings.subagents;
-	if (!subagents || typeof subagents !== "object" || Array.isArray(subagents)) return EMPTY_SUBAGENT_SETTINGS;
-
-	const subagentsObject = subagents as Record<string, unknown>;
-	let disableBuiltins: boolean | undefined;
-	if ("disableBuiltins" in subagentsObject) {
-		if (typeof subagentsObject.disableBuiltins === "boolean") {
-			disableBuiltins = subagentsObject.disableBuiltins;
-		} else {
-			throw new Error(`Subagent settings in '${filePath}' have invalid 'disableBuiltins'; expected a boolean.`);
-		}
-	}
-
-	const parsed: Record<string, BuiltinAgentOverrideConfig> = {};
-	const agentOverrides = subagentsObject.agentOverrides;
-	if (!agentOverrides || typeof agentOverrides !== "object" || Array.isArray(agentOverrides)) {
-		return { overrides: parsed, disableBuiltins };
-	}
-	for (const [name, value] of Object.entries(agentOverrides)) {
-		const override = parseBuiltinOverrideEntry(name, value, filePath);
-		if (override) parsed[name] = override;
-	}
-	return { overrides: parsed, disableBuiltins };
-}
-
-function readMergedSubagentSettings(filePaths: string[]): { settings: SubagentSettings; path: string | null } {
-	let settings = EMPTY_SUBAGENT_SETTINGS;
-	let path: string | null = null;
-	for (let i = filePaths.length - 1; i >= 0; i--) {
-		const filePath = filePaths[i]!;
-		if (!fs.existsSync(filePath)) continue;
-		const next = readSubagentSettings(filePath);
-		settings = {
-			disableBuiltins: next.disableBuiltins ?? settings.disableBuiltins,
-			overrides: { ...settings.overrides, ...next.overrides },
-		};
-		path = filePath;
-	}
-	return { settings, path };
-}
-
-function applyBuiltinOverride(
-	agent: AgentConfig,
-	override: BuiltinAgentOverrideConfig,
-	meta: { scope: "user" | "project"; path: string },
-): AgentConfig {
-	const next: AgentConfig = {
-		...agent,
-		override: { ...meta, base: cloneOverrideBase(agent) },
-	};
-
-	if (override.model !== undefined) next.model = override.model === false ? undefined : override.model;
-	if (override.fallbackModels !== undefined) {
-		next.fallbackModels = override.fallbackModels === false ? undefined : [...override.fallbackModels];
-	}
-	if (override.fallbackThinkingLevels !== undefined) {
-		next.fallbackThinkingLevels = override.fallbackThinkingLevels === false ? undefined : [...override.fallbackThinkingLevels];
-	}
-	if (override.thinking !== undefined) next.thinking = override.thinking === false ? undefined : override.thinking;
-	if (override.systemPromptMode !== undefined) next.systemPromptMode = override.systemPromptMode;
-	if (override.inheritProjectContext !== undefined) next.inheritProjectContext = override.inheritProjectContext;
-	if (override.inheritSkills !== undefined) next.inheritSkills = override.inheritSkills;
-	if (override.defaultContext !== undefined) next.defaultContext = override.defaultContext === false ? undefined : override.defaultContext;
-	if (override.disabled !== undefined) next.disabled = override.disabled;
-	if (override.systemPrompt !== undefined) next.systemPrompt = override.systemPrompt;
-	if (override.skills !== undefined) next.skills = override.skills === false ? undefined : [...override.skills];
-	if (override.tools !== undefined) {
-		const { tools, mcpDirectTools } = splitToolList(override.tools === false ? [] : override.tools);
-		next.tools = tools;
-		next.mcpDirectTools = mcpDirectTools;
-	}
-
-	return next;
-}
-
-function applyBuiltinOverrides(
-	builtinAgents: AgentConfig[],
-	userSettings: SubagentSettings,
-	projectSettings: SubagentSettings,
-	userSettingsPath: string,
-	projectSettingsPath: string | null,
-): AgentConfig[] {
-	const projectBulkDisabled = projectSettings.disableBuiltins === true && projectSettingsPath !== null;
-	const userBulkDisabled = projectSettings.disableBuiltins === undefined && userSettings.disableBuiltins === true;
-
-	return builtinAgents.map((agent) => {
-		const projectOverride = projectSettings.overrides[agent.name];
-		if (projectOverride && projectSettingsPath) {
-			return applyBuiltinOverride(agent, projectOverride, { scope: "project", path: projectSettingsPath });
-		}
-
-		if (projectBulkDisabled && projectSettingsPath) {
-			return applyBuiltinOverride(agent, { disabled: true }, { scope: "project", path: projectSettingsPath });
-		}
-
-		const userOverride = userSettings.overrides[agent.name];
-		if (userOverride) {
-			return applyBuiltinOverride(agent, userOverride, { scope: "user", path: userSettingsPath });
-		}
-
-		if (userBulkDisabled) {
-			return applyBuiltinOverride(agent, { disabled: true }, { scope: "user", path: userSettingsPath });
-		}
-
-		return agent;
-	});
-}
-
-export function buildBuiltinOverrideConfig(
-	base: BuiltinAgentOverrideBase,
-	draft: Pick<AgentConfig, "model" | "fallbackModels" | "fallbackThinkingLevels" | "thinking" | "systemPromptMode" | "inheritProjectContext" | "inheritSkills" | "defaultContext" | "disabled" | "systemPrompt" | "skills" | "tools" | "mcpDirectTools">,
-): BuiltinAgentOverrideConfig | undefined {
-	const override: BuiltinAgentOverrideConfig = {};
-
-	if (draft.model !== base.model) override.model = draft.model ?? false;
-	if (!arraysEqual(draft.fallbackModels, base.fallbackModels)) override.fallbackModels = draft.fallbackModels ? [...draft.fallbackModels] : false;
-	if (!arraysEqual(draft.fallbackThinkingLevels, base.fallbackThinkingLevels)) override.fallbackThinkingLevels = draft.fallbackThinkingLevels ? [...draft.fallbackThinkingLevels] : false;
-	if (draft.thinking !== base.thinking) override.thinking = draft.thinking ?? false;
-	if (draft.systemPromptMode !== base.systemPromptMode) override.systemPromptMode = draft.systemPromptMode;
-	if (draft.inheritProjectContext !== base.inheritProjectContext) override.inheritProjectContext = draft.inheritProjectContext;
-	if (draft.inheritSkills !== base.inheritSkills) override.inheritSkills = draft.inheritSkills;
-	if (draft.defaultContext !== base.defaultContext) override.defaultContext = draft.defaultContext ?? false;
-	if (draft.disabled !== base.disabled) override.disabled = draft.disabled ?? false;
-	if (draft.systemPrompt !== base.systemPrompt) override.systemPrompt = draft.systemPrompt;
-	if (!arraysEqual(draft.skills, base.skills)) override.skills = draft.skills ? [...draft.skills] : false;
-
-	const baseTools = joinToolList(base);
-	const draftTools = joinToolList(draft);
-	if (!arraysEqual(draftTools, baseTools)) override.tools = draftTools ? [...draftTools] : false;
-	return Object.keys(override).length > 0 ? override : undefined;
-}
-
-export function saveBuiltinAgentOverride(
-	cwd: string,
-	name: string,
-	scope: "user" | "project",
-	override: BuiltinAgentOverrideConfig,
-): string {
-	const filePath = scope === "project" ? getProjectAgentSettingsPath(cwd) : getUserAgentSettingsPath();
-	if (!filePath) throw new Error("Project override is not available here. No project config root was found.");
-
-	const settings = readSettingsFileStrict(filePath);
-	const subagents = settings.subagents && typeof settings.subagents === "object" && !Array.isArray(settings.subagents)
-		? { ...(settings.subagents as Record<string, unknown>) }
-		: {};
-	const agentOverrides = subagents.agentOverrides && typeof subagents.agentOverrides === "object" && !Array.isArray(subagents.agentOverrides)
-		? { ...(subagents.agentOverrides as Record<string, unknown>) }
-		: {};
-
-	agentOverrides[name] = cloneOverrideValue(override);
-	subagents.agentOverrides = agentOverrides;
-	settings.subagents = subagents;
-	writeSettingsFile(filePath, settings);
-	return filePath;
-}
-
-export function removeBuiltinAgentOverride(cwd: string, name: string, scope: "user" | "project"): string {
-	const filePath = scope === "project" ? getProjectAgentSettingsPath(cwd) : getUserAgentSettingsPath();
-	if (!filePath) throw new Error("Project override is not available here. No project config root was found.");
-	if (!fs.existsSync(filePath)) return filePath;
-
-	const settings = readSettingsFileStrict(filePath);
-	const subagents = settings.subagents;
-	if (!subagents || typeof subagents !== "object" || Array.isArray(subagents)) return filePath;
-	const nextSubagents = { ...(subagents as Record<string, unknown>) };
-	const agentOverrides = nextSubagents.agentOverrides;
-	if (!agentOverrides || typeof agentOverrides !== "object" || Array.isArray(agentOverrides)) return filePath;
-
-	const nextOverrides = { ...(agentOverrides as Record<string, unknown>) };
-	delete nextOverrides[name];
-	if (Object.keys(nextOverrides).length > 0) nextSubagents.agentOverrides = nextOverrides;
-	else delete nextSubagents.agentOverrides;
-
-	if (Object.keys(nextSubagents).length > 0) settings.subagents = nextSubagents;
-	else delete settings.subagents;
-
-	writeSettingsFile(filePath, settings);
-	return filePath;
-}
-
-function listFilesRecursive(dir: string, predicate: (fileName: string) => boolean): string[] {
-	const files: string[] = [];
-	if (!fs.existsSync(dir)) return files;
-
-	let entries: fs.Dirent[];
-	try {
-		entries = fs.readdirSync(dir, { withFileTypes: true }).sort((a, b) => a.name.localeCompare(b.name));
-	} catch {
-		return files;
-	}
-
-	for (const entry of entries) {
-		const filePath = path.join(dir, entry.name);
-		if (entry.isDirectory()) {
-			files.push(...listFilesRecursive(filePath, predicate));
-			continue;
-		}
-		if (!entry.isFile() && !entry.isSymbolicLink()) continue;
-		if (!predicate(entry.name)) continue;
-		files.push(filePath);
-	}
-	return files;
-}
-
-function loadAgentsFromDir(dir: string, source: AgentSource): AgentConfig[] {
-	const agents: AgentConfig[] = [];
-
-	for (const filePath of listFilesRecursive(dir, (fileName) => fileName.endsWith(".md") && !fileName.endsWith(".chain.md"))) {
-		let content: string;
-		try {
-			content = fs.readFileSync(filePath, "utf-8");
-		} catch {
-			continue;
-		}
-
-		const { frontmatter, body } = parseFrontmatter(content);
-
-		if (!frontmatter.name || !frontmatter.description) {
-			continue;
-		}
-
-		const localName = frontmatter.name;
-		const parsedPackage = parsePackageName(frontmatter.package, `Agent '${localName}' package`);
-		if (parsedPackage.error) continue;
-		const packageName = parsedPackage.packageName;
-		const runtimeName = buildRuntimeName(localName, packageName);
-
-		const rawTools = frontmatter.tools
-			?.split(",")
-			.map((t) => t.trim())
-			.filter(Boolean);
-
-		const mcpDirectTools: string[] = [];
-		const tools: string[] = [];
-		if (rawTools) {
-			for (const tool of rawTools) {
-				if (tool.startsWith("mcp:")) {
-					mcpDirectTools.push(tool.slice(4));
-				} else {
-					tools.push(tool);
-				}
-			}
-		}
-
-		const defaultReads = frontmatter.defaultReads
-			?.split(",")
-			.map((f) => f.trim())
-			.filter(Boolean);
-
-		const skillStr = frontmatter.skill || frontmatter.skills;
-		const skills = skillStr
-			?.split(",")
-			.map((s) => s.trim())
-			.filter(Boolean);
-		const fallbackModels = frontmatter.fallbackModels
-			?.split(",")
-			.map((model) => model.trim())
-			.filter(Boolean);
-		const fallbackThinkingLevels = frontmatter.fallbackThinkingLevels
-			?.split(",")
-			.map((level) => level.trim())
-			.filter(Boolean);
-		const systemPromptMode = frontmatter.systemPromptMode === "replace"
-			? "replace"
-			: frontmatter.systemPromptMode === "append"
-				? "append"
-				: defaultSystemPromptMode(localName);
-		const inheritProjectContext = frontmatter.inheritProjectContext === "true"
-			? true
-			: frontmatter.inheritProjectContext === "false"
-				? false
-				: defaultInheritProjectContext(localName);
-		const inheritSkills = frontmatter.inheritSkills === "true"
-			? true
-			: frontmatter.inheritSkills === "false"
-				? false
-				: defaultInheritSkills();
-		const defaultContext = frontmatter.defaultContext === "fork"
-			? "fork" as const
-			: frontmatter.defaultContext === "fresh"
-				? "fresh" as const
-				: undefined;
-
-		let extensions: string[] | undefined;
-		if (frontmatter.extensions !== undefined) {
-			extensions = frontmatter.extensions
-				.split(",")
-				.map((e) => e.trim())
-				.filter(Boolean);
-		}
-
-		const extraFields: Record<string, string> = {};
-		for (const [key, value] of Object.entries(frontmatter)) {
-			if (shouldPreserveAgentExtraField(key)) extraFields[key] = value;
-		}
-
-		const parsedMaxSubagentDepth = Number(frontmatter.maxSubagentDepth);
-
-		agents.push({
-			name: runtimeName,
-			localName,
-			packageName,
-			description: frontmatter.description,
-			tools: tools.length > 0 ? tools : undefined,
-			mcpDirectTools: mcpDirectTools.length > 0 ? mcpDirectTools : undefined,
-			model: frontmatter.model,
-			fallbackModels: fallbackModels && fallbackModels.length > 0 ? fallbackModels : undefined,
-			fallbackThinkingLevels: fallbackThinkingLevels && fallbackThinkingLevels.length > 0 ? fallbackThinkingLevels : undefined,
-			thinking: frontmatter.thinking,
-			systemPromptMode,
-			inheritProjectContext,
-			inheritSkills,
-			defaultContext,
-			systemPrompt: body,
-			source,
-			filePath,
-			skills: skills && skills.length > 0 ? skills : undefined,
-			extensions,
-			output: frontmatter.output,
-			defaultReads: defaultReads && defaultReads.length > 0 ? defaultReads : undefined,
-			defaultProgress: frontmatter.defaultProgress === "true",
-			interactive: frontmatter.interactive === "true",
-			maxSubagentDepth:
-				Number.isInteger(parsedMaxSubagentDepth) && parsedMaxSubagentDepth >= 0
-					? parsedMaxSubagentDepth
-					: undefined,
-			extraFields: Object.keys(extraFields).length > 0 ? extraFields : undefined,
-		});
-	}
-
-	return agents;
-}
-
-function loadChainsFromDir(dir: string, source: "user" | "project"): { chains: ChainConfig[]; diagnostics: ChainDiscoveryDiagnostic[] } {
-	const chains = new Map<string, ChainConfig>();
-	const diagnostics: ChainDiscoveryDiagnostic[] = [];
-
-	for (const filePath of listFilesRecursive(dir, (fileName) => fileName.endsWith(".chain.md") || fileName.endsWith(".chain.json"))) {
-		let content: string;
-		try {
-			content = fs.readFileSync(filePath, "utf-8");
-		} catch {
-			continue;
-		}
-
-		try {
-			const chain = filePath.endsWith(".chain.json") ? parseJsonChain(content, source, filePath) : parseChain(content, source, filePath);
-			const existing = chains.get(chain.name);
-			if (existing && existing.filePath.endsWith(".chain.json") && filePath.endsWith(".chain.md")) continue;
-			chains.set(chain.name, chain);
-		} catch (error) {
-			diagnostics.push({ source, filePath, error: error instanceof Error ? error.message : String(error) });
-			continue;
-		}
-	}
-
-	return { chains: Array.from(chains.values()), diagnostics };
-}
-
-function isDirectory(p: string): boolean {
-	try {
-		return fs.statSync(p).isDirectory();
-	} catch {
-		return false;
-	}
-}
-
-function resolveNearestProjectAgentDirs(cwd: string): { readDirs: string[]; preferredDir: string | null } {
-	const projectRoot = findNearestProjectRoot(cwd);
-	if (!projectRoot) return { readDirs: [], preferredDir: null };
-
-	const legacyDir = path.join(projectRoot, ".agents");
-	const preferredDir = path.join(getProjectConfigDirs(projectRoot)[0]!, "agents");
-	const readDirs: string[] = [];
-	if (isDirectory(legacyDir)) readDirs.push(legacyDir);
-	for (const configDir of getProjectConfigDirs(projectRoot).reverse()) {
-		const agentsDir = path.join(configDir, "agents");
-		if (isDirectory(agentsDir)) readDirs.push(agentsDir);
-	}
-
-	return {
-		readDirs,
-		preferredDir,
-	};
-}
-
-function resolveNearestProjectChainDirs(cwd: string): { readDirs: string[]; preferredDir: string | null } {
-	const projectRoot = findNearestProjectRoot(cwd);
-	if (!projectRoot) return { readDirs: [], preferredDir: null };
-
-	const preferredDir = path.join(getProjectConfigDirs(projectRoot)[0]!, "chains");
-	return {
-		readDirs: getProjectConfigDirs(projectRoot).reverse().map((configDir) => path.join(configDir, "chains")).filter(isDirectory),
-		preferredDir,
-	};
-}
-const BUILTIN_AGENTS_DIR = path.resolve(path.dirname(fileURLToPath(import.meta.url)), "..", "..", "agents");
-
-export function discoverAgents(cwd: string, scope: AgentScope): AgentDiscoveryResult {
-	const userDirOld = getUserAgentDirs();
-	const userDirNew = path.join(os.homedir(), ".agents");
-	const { readDirs: projectAgentDirs, preferredDir: projectAgentsDir } = resolveNearestProjectAgentDirs(cwd);
-	const userSettingsLoad = readMergedSubagentSettings(getUserAgentSettingsPaths());
-	const projectSettingsLoad = readMergedSubagentSettings(getProjectAgentSettingsPaths(cwd));
-	const userSettingsPath = userSettingsLoad.path ?? getUserAgentSettingsPath();
-	const projectSettingsPath = projectSettingsLoad.path ?? getProjectAgentSettingsPath(cwd);
-	const userSettings = scope === "project" ? EMPTY_SUBAGENT_SETTINGS : userSettingsLoad.settings;
-	const projectSettings = scope === "user" ? EMPTY_SUBAGENT_SETTINGS : projectSettingsLoad.settings;
-
-	const builtinAgents = applyBuiltinOverrides(
-		loadAgentsFromDir(BUILTIN_AGENTS_DIR, "builtin"),
-		userSettings,
-		projectSettings,
-		userSettingsPath,
-		projectSettingsPath,
-	);
-
-	const userAgentsOld = scope === "project" ? [] : userDirOld.flatMap((dir) => loadAgentsFromDir(dir, "user"));
-	const userAgentsNew = scope === "project" ? [] : loadAgentsFromDir(userDirNew, "user");
-	const userAgents = [...userAgentsOld, ...userAgentsNew];
-
-	const projectAgents = scope === "user" ? [] : projectAgentDirs.flatMap((dir) => loadAgentsFromDir(dir, "project"));
-	const agents = mergeAgentsForScope(scope, userAgents, projectAgents, builtinAgents)
-		.filter((agent) => agent.disabled !== true);
-
-	return { agents, projectAgentsDir };
-}
-
-export function discoverAgentsAll(cwd: string): {
-	builtin: AgentConfig[];
-	user: AgentConfig[];
-	project: AgentConfig[];
-	chains: ChainConfig[];
-	chainDiagnostics: ChainDiscoveryDiagnostic[];
-	userDir: string;
-	projectDir: string | null;
-	userChainDir: string;
-	projectChainDir: string | null;
-	userSettingsPath: string;
-	projectSettingsPath: string | null;
-} {
-	const userDirOld = getUserAgentDirs();
-	const userDirNew = path.join(os.homedir(), ".agents");
-	const userChainDir = getUserChainDir();
-	const { readDirs: projectDirs, preferredDir: projectDir } = resolveNearestProjectAgentDirs(cwd);
-	const { readDirs: projectChainDirs, preferredDir: projectChainDir } = resolveNearestProjectChainDirs(cwd);
-	const userSettingsLoad = readMergedSubagentSettings(getUserAgentSettingsPaths());
-	const projectSettingsLoad = readMergedSubagentSettings(getProjectAgentSettingsPaths(cwd));
-	const userSettingsPath = userSettingsLoad.path ?? getUserAgentSettingsPath();
-	const projectSettingsPath = projectSettingsLoad.path ?? getProjectAgentSettingsPath(cwd);
-	const userSettings = userSettingsLoad.settings;
-	const projectSettings = projectSettingsLoad.settings;
-
-	const builtin = applyBuiltinOverrides(
-		loadAgentsFromDir(BUILTIN_AGENTS_DIR, "builtin"),
-		userSettings,
-		projectSettings,
-		userSettingsPath,
-		projectSettingsPath,
-	);
-	const user = [
-		...userDirOld.flatMap((dir) => loadAgentsFromDir(dir, "user")),
-		...loadAgentsFromDir(userDirNew, "user"),
-	];
-	const projectMap = new Map<string, AgentConfig>();
-	for (const dir of projectDirs) {
-		for (const agent of loadAgentsFromDir(dir, "project")) {
-			projectMap.set(agent.name, agent);
-		}
-	}
-	const project = Array.from(projectMap.values());
-
-	const chainMap = new Map<string, ChainConfig>();
-	const projectChainDiagnostics: ChainDiscoveryDiagnostic[] = [];
-	for (const dir of projectChainDirs) {
-		const loaded = loadChainsFromDir(dir, "project");
-		projectChainDiagnostics.push(...loaded.diagnostics);
-		for (const chain of loaded.chains) {
-			chainMap.set(chain.name, chain);
-		}
-	}
-	const userChainLoads = getUserChainDirs().map((dir) => loadChainsFromDir(dir, "user"));
-	const chains = [
-		...userChainLoads.flatMap((loaded) => loaded.chains),
-		...Array.from(chainMap.values()),
-	];
-	const chainDiagnostics = [
-		...userChainLoads.flatMap((loaded) => loaded.diagnostics),
-		...projectChainDiagnostics,
-	];
-
-	const legacyUserAgentDir = userDirOld[0]!;
-	// ATOMIC_CODING_AGENT_DIR is already applied by getUserAgentDirs(); prefer that resolved path over ~/.agents.
-	const userDir = getEnvValue("ATOMIC_CODING_AGENT_DIR") ? legacyUserAgentDir : fs.existsSync(userDirNew) ? userDirNew : legacyUserAgentDir;
-
-	return { builtin, user, project, chains, chainDiagnostics, userDir, projectDir, userChainDir, projectChainDir, userSettingsPath, projectSettingsPath };
-}