@bastani/atomic 0.8.28-alpha.1 → 0.8.28-alpha.3

package/dist/core/resolve-config-value.js

@@ -6,17 +6,130 @@ import { execSync, spawnSync } from "child_process";
 import { getShellConfig } from "../utils/shell.js";
 // Cache for shell command results (persists for process lifetime)
 const commandResultCache = new Map();
+const ENV_VAR_NAME_RE = /^[A-Za-z_][A-Za-z0-9_]*$/;
+const ENV_VAR_NAME_PREFIX_RE = /^[A-Za-z_][A-Za-z0-9_]*/;
+const LEGACY_ENV_VAR_NAME_RE = /^[A-Z_][A-Z0-9_]*$/;
+function appendLiteral(parts, value) {
+    if (!value)
+        return;
+    const previousPart = parts[parts.length - 1];
+    if (previousPart?.type === "literal") {
+        previousPart.value += value;
+        return;
+    }
+    parts.push({ type: "literal", value });
+}
+function parseConfigValueTemplate(config) {
+    const parts = [];
+    let index = 0;
+    while (index < config.length) {
+        const dollarIndex = config.indexOf("$", index);
+        if (dollarIndex < 0) {
+            appendLiteral(parts, config.slice(index));
+            break;
+        }
+        appendLiteral(parts, config.slice(index, dollarIndex));
+        const nextChar = config[dollarIndex + 1];
+        if (nextChar === "$" || nextChar === "!") {
+            appendLiteral(parts, nextChar);
+            index = dollarIndex + 2;
+            continue;
+        }
+        if (nextChar === "{") {
+            const endIndex = config.indexOf("}", dollarIndex + 2);
+            if (endIndex < 0) {
+                appendLiteral(parts, "$");
+                index = dollarIndex + 1;
+                continue;
+            }
+            const name = config.slice(dollarIndex + 2, endIndex);
+            if (ENV_VAR_NAME_RE.test(name)) {
+                parts.push({ type: "env", name });
+            }
+            else {
+                appendLiteral(parts, config.slice(dollarIndex, endIndex + 1));
+            }
+            index = endIndex + 1;
+            continue;
+        }
+        const match = config.slice(dollarIndex + 1).match(ENV_VAR_NAME_PREFIX_RE);
+        if (match) {
+            parts.push({ type: "env", name: match[0] });
+            index = dollarIndex + 1 + match[0].length;
+            continue;
+        }
+        appendLiteral(parts, "$");
+        index = dollarIndex + 1;
+    }
+    return parts;
+}
+function parseConfigValueReference(config) {
+    if (config.startsWith("!")) {
+        return { type: "command", config };
+    }
+    return { type: "template", parts: parseConfigValueTemplate(config) };
+}
+function resolveEnvConfigValue(name) {
+    return process.env[name] || undefined;
+}
+function getTemplateEnvVarNames(parts) {
+    const names = [];
+    for (const part of parts) {
+        if (part.type !== "env" || names.includes(part.name))
+            continue;
+        names.push(part.name);
+    }
+    return names;
+}
+function resolveTemplate(parts) {
+    let resolved = "";
+    for (const part of parts) {
+        if (part.type === "literal") {
+            resolved += part.value;
+            continue;
+        }
+        const envValue = resolveEnvConfigValue(part.name);
+        if (envValue === undefined)
+            return undefined;
+        resolved += envValue;
+    }
+    return resolved;
+}
+export function getConfigValueEnvVarName(config) {
+    const reference = parseConfigValueReference(config);
+    if (reference.type !== "template")
+        return undefined;
+    return reference.parts.length === 1 && reference.parts[0]?.type === "env" ? reference.parts[0].name : undefined;
+}
+export function getConfigValueEnvVarNames(config) {
+    const reference = parseConfigValueReference(config);
+    return reference.type === "template" ? getTemplateEnvVarNames(reference.parts) : [];
+}
+export function getMissingConfigValueEnvVarNames(config) {
+    return getConfigValueEnvVarNames(config).filter((name) => resolveEnvConfigValue(name) === undefined);
+}
+export function isCommandConfigValue(config) {
+    return parseConfigValueReference(config).type === "command";
+}
+export function isConfigValueConfigured(config) {
+    return getMissingConfigValueEnvVarNames(config).length === 0;
+}
+export function isLegacyEnvVarNameConfigValue(config) {
+    return LEGACY_ENV_VAR_NAME_RE.test(config);
+}
 /**
  * Resolve a config value (API key, header value, etc.) to an actual value.
  * - If starts with "!", executes the rest as a shell command and uses stdout (cached)
- * - Otherwise checks environment variable first, then treats as literal (not cached)
+ * - Interpolates "$ENV_VAR" or "${ENV_VAR}" references with the named environment variable
+ * - In non-command values, "$$" escapes a literal "$" and "$!" escapes a literal "!"
+ * - Otherwise treats the value as a literal
  */
 export function resolveConfigValue(config) {
-    if (config.startsWith("!")) {
-        return executeCommand(config);
+    const reference = parseConfigValueReference(config);
+    if (reference.type === "command") {
+        return executeCommand(reference.config);
     }
-    const envValue = process.env[config];
-    return envValue || config;
+    return resolveTemplate(reference.parts);
 }
 function executeWithConfiguredShell(command) {
     try {
@@ -79,19 +192,29 @@ function executeCommand(commandConfig) {
  * Resolve all header values using the same resolution logic as API keys.
  */
 export function resolveConfigValueUncached(config) {
-    if (config.startsWith("!")) {
-        return executeCommandUncached(config);
+    const reference = parseConfigValueReference(config);
+    if (reference.type === "command") {
+        return executeCommandUncached(reference.config);
     }
-    const envValue = process.env[config];
-    return envValue || config;
+    return resolveTemplate(reference.parts);
 }
 export function resolveConfigValueOrThrow(config, description) {
     const resolvedValue = resolveConfigValueUncached(config);
     if (resolvedValue !== undefined) {
         return resolvedValue;
     }
-    if (config.startsWith("!")) {
-        throw new Error(`Failed to resolve ${description} from shell command: ${config.slice(1)}`);
+    const reference = parseConfigValueReference(config);
+    if (reference.type === "command") {
+        throw new Error(`Failed to resolve ${description} from shell command: ${reference.config.slice(1)}`);
+    }
+    if (reference.type === "template") {
+        const missingEnvVars = getMissingConfigValueEnvVarNames(config);
+        if (missingEnvVars.length === 1) {
+            throw new Error(`Failed to resolve ${description} from environment variable: ${missingEnvVars[0]}`);
+        }
+        if (missingEnvVars.length > 1) {
+            throw new Error(`Failed to resolve ${description} from environment variables: ${missingEnvVars.join(", ")}`);
+        }
     }
     throw new Error(`Failed to resolve ${description}`);
 }

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If starts with \"!\", executes the rest as a shell command and uses stdout (cached)\n * - Otherwise checks environment variable first, then treats as literal (not cached)\n */\nexport function resolveConfigValue(config: string): string | undefined {\n\tif (config.startsWith(\"!\")) {\n\t\treturn executeCommand(config);\n\t}\n\tconst envValue = process.env[config];\n\treturn envValue || config;\n}\n\nfunction executeWithConfiguredShell(command: string): { executed: boolean; value: string | undefined } {\n\ttry {\n\t\tconst { shell, args } = getShellConfig();\n\t\tconst result = spawnSync(shell, [...args, command], {\n\t\t\tencoding: \"utf-8\",\n\t\t\ttimeout: 10000,\n\t\t\tstdio: [\"ignore\", \"pipe\", \"ignore\"],\n\t\t\tshell: false,\n\t\t\twindowsHide: true,\n\t\t});\n\n\t\tif (result.error) {\n\t\t\tconst error = result.error as NodeJS.ErrnoException;\n\t\t\tif (error.code === \"ENOENT\") {\n\t\t\t\treturn { executed: false, value: undefined };\n\t\t\t}\n\t\t\treturn { executed: true, value: undefined };\n\t\t}\n\n\t\tif (result.status !== 0) {\n\t\t\treturn { executed: true, value: undefined };\n\t\t}\n\n\t\tconst value = (result.stdout ?? \"\").trim();\n\t\treturn { executed: true, value: value || undefined };\n\t} catch {\n\t\treturn { executed: false, value: undefined };\n\t}\n}\n\nfunction executeWithDefaultShell(command: string): string | undefined {\n\ttry {\n\t\tconst output = execSync(command, {\n\t\t\tencoding: \"utf-8\",\n\t\t\ttimeout: 10000,\n\t\t\tstdio: [\"ignore\", \"pipe\", \"ignore\"],\n\t\t});\n\t\treturn output.trim() || undefined;\n\t} catch {\n\t\treturn undefined;\n\t}\n}\n\nfunction executeCommandUncached(commandConfig: string): string | undefined {\n\tconst command = commandConfig.slice(1);\n\treturn process.platform === \"win32\"\n\t\t? (() => {\n\t\t\t\tconst configuredResult = executeWithConfiguredShell(command);\n\t\t\t\treturn configuredResult.executed ? configuredResult.value : executeWithDefaultShell(command);\n\t\t\t})()\n\t\t: executeWithDefaultShell(command);\n}\n\nfunction executeCommand(commandConfig: string): string | undefined {\n\tif (commandResultCache.has(commandConfig)) {\n\t\treturn commandResultCache.get(commandConfig);\n\t}\n\n\tconst result = executeCommandUncached(commandConfig);\n\tcommandResultCache.set(commandConfig, result);\n\treturn result;\n}\n\n/**\n * Resolve all header values using the same resolution logic as API keys.\n */\nexport function resolveConfigValueUncached(config: string): string | undefined {\n\tif (config.startsWith(\"!\")) {\n\t\treturn executeCommandUncached(config);\n\t}\n\tconst envValue = process.env[config];\n\treturn envValue || config;\n}\n\nexport function resolveConfigValueOrThrow(config: string, description: string): string {\n\tconst resolvedValue = resolveConfigValueUncached(config);\n\tif (resolvedValue !== undefined) {\n\t\treturn resolvedValue;\n\t}\n\n\tif (config.startsWith(\"!\")) {\n\t\tthrow new Error(`Failed to resolve ${description} from shell command: ${config.slice(1)}`);\n\t}\n\n\tthrow new Error(`Failed to resolve ${description}`);\n}\n\n/**\n * Resolve all header values using the same resolution logic as API keys.\n */\nexport function resolveHeaders(headers: Record<string, string> | undefined): Record<string, string> | undefined {\n\tif (!headers) return undefined;\n\tconst resolved: Record<string, string> = {};\n\tfor (const [key, value] of Object.entries(headers)) {\n\t\tconst resolvedValue = resolveConfigValue(value);\n\t\tif (resolvedValue) {\n\t\t\tresolved[key] = resolvedValue;\n\t\t}\n\t}\n\treturn Object.keys(resolved).length > 0 ? resolved : undefined;\n}\n\nexport function resolveHeadersOrThrow(\n\theaders: Record<string, string> | undefined,\n\tdescription: string,\n): Record<string, string> | undefined {\n\tif (!headers) return undefined;\n\tconst resolved: Record<string, string> = {};\n\tfor (const [key, value] of Object.entries(headers)) {\n\t\tresolved[key] = resolveConfigValueOrThrow(value, `${description} header \"${key}\"`);\n\t}\n\treturn Object.keys(resolved).length > 0 ? resolved : undefined;\n}\n\n/** Clear the config value command cache. Exported for testing. */\nexport function clearConfigValueCache(): void {\n\tcommandResultCache.clear();\n}\n"]}
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type: \"env\", name });\n\t\t\t} else {\n\t\t\t\tappendLiteral(parts, config.slice(dollarIndex, endIndex + 1));\n\t\t\t}\n\t\t\tindex = endIndex + 1;\n\t\t\tcontinue;\n\t\t}\n\n\t\tconst match = config.slice(dollarIndex + 1).match(ENV_VAR_NAME_PREFIX_RE);\n\t\tif (match) {\n\t\t\tparts.push({ type: \"env\", name: match[0] });\n\t\t\tindex = dollarIndex + 1 + match[0].length;\n\t\t\tcontinue;\n\t\t}\n\n\t\tappendLiteral(parts, \"$\");\n\t\tindex = dollarIndex + 1;\n\t}\n\n\treturn parts;\n}\n\nfunction parseConfigValueReference(config: string): ConfigValueReference {\n\tif (config.startsWith(\"!\")) {\n\t\treturn { type: \"command\", config };\n\t}\n\n\treturn { type: \"template\", parts: parseConfigValueTemplate(config) };\n}\n\nfunction resolveEnvConfigValue(name: string): string | undefined {\n\treturn process.env[name] || undefined;\n}\n\nfunction getTemplateEnvVarNames(parts: TemplatePart[]): string[] {\n\tconst names: string[] = [];\n\tfor (const part of parts) {\n\t\tif (part.type !== \"env\" || names.includes(part.name)) continue;\n\t\tnames.push(part.name);\n\t}\n\treturn names;\n}\n\nfunction resolveTemplate(parts: TemplatePart[]): string | undefined {\n\tlet resolved = \"\";\n\tfor (const part of parts) {\n\t\tif (part.type === \"literal\") {\n\t\t\tresolved += part.value;\n\t\t\tcontinue;\n\t\t}\n\t\tconst envValue = resolveEnvConfigValue(part.name);\n\t\tif (envValue === undefined) return undefined;\n\t\tresolved += envValue;\n\t}\n\treturn resolved;\n}\n\nexport function getConfigValueEnvVarName(config: string): string | undefined {\n\tconst reference = parseConfigValueReference(config);\n\tif (reference.type !== \"template\") return undefined;\n\treturn reference.parts.length === 1 && reference.parts[0]?.type === \"env\" ? reference.parts[0].name : undefined;\n}\n\nexport function getConfigValueEnvVarNames(config: string): string[] {\n\tconst reference = parseConfigValueReference(config);\n\treturn reference.type === \"template\" ? getTemplateEnvVarNames(reference.parts) : [];\n}\n\nexport function getMissingConfigValueEnvVarNames(config: string): string[] {\n\treturn getConfigValueEnvVarNames(config).filter((name) => resolveEnvConfigValue(name) === undefined);\n}\n\nexport function isCommandConfigValue(config: string): boolean {\n\treturn parseConfigValueReference(config).type === \"command\";\n}\n\nexport function isConfigValueConfigured(config: string): boolean {\n\treturn getMissingConfigValueEnvVarNames(config).length === 0;\n}\n\nexport function isLegacyEnvVarNameConfigValue(config: string): boolean {\n\treturn LEGACY_ENV_VAR_NAME_RE.test(config);\n}\n\n/**\n * Resolve a config value (API key, header value, etc.) to an actual value.\n * - If starts with \"!\", executes the rest as a shell command and uses stdout (cached)\n * - Interpolates \"$ENV_VAR\" or \"${ENV_VAR}\" references with the named environment variable\n * - In non-command values, \"$$\" escapes a literal \"$\" and \"$!\" escapes a literal \"!\"\n * - Otherwise treats the value as a literal\n */\nexport function resolveConfigValue(config: string): string | undefined {\n\tconst reference = parseConfigValueReference(config);\n\tif (reference.type === \"command\") {\n\t\treturn executeCommand(reference.config);\n\t}\n\treturn resolveTemplate(reference.parts);\n}\n\nfunction executeWithConfiguredShell(command: string): { executed: boolean; value: string | undefined } {\n\ttry {\n\t\tconst { shell, args } = getShellConfig();\n\t\tconst result = spawnSync(shell, [...args, command], {\n\t\t\tencoding: \"utf-8\",\n\t\t\ttimeout: 10000,\n\t\t\tstdio: [\"ignore\", \"pipe\", \"ignore\"],\n\t\t\tshell: false,\n\t\t\twindowsHide: true,\n\t\t});\n\n\t\tif (result.error) {\n\t\t\tconst error = result.error as NodeJS.ErrnoException;\n\t\t\tif (error.code === \"ENOENT\") {\n\t\t\t\treturn { executed: false, value: undefined };\n\t\t\t}\n\t\t\treturn { executed: true, value: undefined };\n\t\t}\n\n\t\tif (result.status !== 0) {\n\t\t\treturn { executed: true, value: undefined };\n\t\t}\n\n\t\tconst value = (result.stdout ?? \"\").trim();\n\t\treturn { executed: true, value: value || undefined };\n\t} catch {\n\t\treturn { executed: false, value: undefined };\n\t}\n}\n\nfunction executeWithDefaultShell(command: string): string | undefined {\n\ttry {\n\t\tconst output = execSync(command, {\n\t\t\tencoding: \"utf-8\",\n\t\t\ttimeout: 10000,\n\t\t\tstdio: [\"ignore\", \"pipe\", \"ignore\"],\n\t\t});\n\t\treturn output.trim() || undefined;\n\t} catch {\n\t\treturn undefined;\n\t}\n}\n\nfunction executeCommandUncached(commandConfig: string): string | undefined {\n\tconst command = commandConfig.slice(1);\n\treturn process.platform === \"win32\"\n\t\t? (() => {\n\t\t\t\tconst configuredResult = executeWithConfiguredShell(command);\n\t\t\t\treturn configuredResult.executed ? configuredResult.value : executeWithDefaultShell(command);\n\t\t\t})()\n\t\t: executeWithDefaultShell(command);\n}\n\nfunction executeCommand(commandConfig: string): string | undefined {\n\tif (commandResultCache.has(commandConfig)) {\n\t\treturn commandResultCache.get(commandConfig);\n\t}\n\n\tconst result = executeCommandUncached(commandConfig);\n\tcommandResultCache.set(commandConfig, result);\n\treturn result;\n}\n\n/**\n * Resolve all header values using the same resolution logic as API keys.\n */\nexport function resolveConfigValueUncached(config: string): string | undefined {\n\tconst reference = parseConfigValueReference(config);\n\tif (reference.type === \"command\") {\n\t\treturn executeCommandUncached(reference.config);\n\t}\n\treturn resolveTemplate(reference.parts);\n}\n\nexport function resolveConfigValueOrThrow(config: string, description: string): string {\n\tconst resolvedValue = resolveConfigValueUncached(config);\n\tif (resolvedValue !== undefined) {\n\t\treturn resolvedValue;\n\t}\n\n\tconst reference = parseConfigValueReference(config);\n\tif (reference.type === \"command\") {\n\t\tthrow new Error(`Failed to resolve ${description} from shell command: ${reference.config.slice(1)}`);\n\t}\n\n\tif (reference.type === \"template\") {\n\t\tconst missingEnvVars = getMissingConfigValueEnvVarNames(config);\n\t\tif (missingEnvVars.length === 1) {\n\t\t\tthrow new Error(`Failed to resolve ${description} from environment variable: ${missingEnvVars[0]}`);\n\t\t}\n\t\tif (missingEnvVars.length > 1) {\n\t\t\tthrow new Error(`Failed to resolve ${description} from environment variables: ${missingEnvVars.join(\", \")}`);\n\t\t}\n\t}\n\n\tthrow new Error(`Failed to resolve ${description}`);\n}\n\n/**\n * Resolve all header values using the same resolution logic as API keys.\n */\nexport function resolveHeaders(headers: Record<string, string> | undefined): Record<string, string> | undefined {\n\tif (!headers) return undefined;\n\tconst resolved: Record<string, string> = {};\n\tfor (const [key, value] of Object.entries(headers)) {\n\t\tconst resolvedValue = resolveConfigValue(value);\n\t\tif (resolvedValue) {\n\t\t\tresolved[key] = resolvedValue;\n\t\t}\n\t}\n\treturn Object.keys(resolved).length > 0 ? resolved : undefined;\n}\n\nexport function resolveHeadersOrThrow(\n\theaders: Record<string, string> | undefined,\n\tdescription: string,\n): Record<string, string> | undefined {\n\tif (!headers) return undefined;\n\tconst resolved: Record<string, string> = {};\n\tfor (const [key, value] of Object.entries(headers)) {\n\t\tresolved[key] = resolveConfigValueOrThrow(value, `${description} header \"${key}\"`);\n\t}\n\treturn Object.keys(resolved).length > 0 ? resolved : undefined;\n}\n\n/** Clear the config value command cache. Exported for testing. */\nexport function clearConfigValueCache(): void {\n\tcommandResultCache.clear();\n}\n"]}

package/dist/core/resource-loader.d.ts

@@ -21,6 +21,11 @@ export interface ResourceExtensionPaths {
         metadata: PathMetadata;
     }>;
 }
+export interface ResourceLoaderReloadOptions {
+    resolveProjectTrust?: (options: {
+        extensionsResult: LoadExtensionsResult;
+    }) => boolean | Promise<boolean>;
+}
 export interface ResourceLoader {
     getExtensions(): LoadExtensionsResult;
     getSkills(): {
@@ -44,11 +49,12 @@ export interface ResourceLoader {
     getSystemPrompt(): string | undefined;
     getAppendSystemPrompt(): string[];
     extendResources(paths: ResourceExtensionPaths): void;
-    reload(): Promise<void>;
+    reload(options?: ResourceLoaderReloadOptions): Promise<void>;
 }
 export declare function loadProjectContextFiles(options: {
     cwd: string;
     agentDir: string;
+    projectTrusted?: boolean;
 }): Array<{
     path: string;
     content: string;
@@ -175,7 +181,8 @@ export declare class DefaultResourceLoader implements ResourceLoader {
     getWorkflowResources(): ResolvedResource[];
     refreshWorkflowResources(): Promise<ResolvedResource[]>;
     extendResources(paths: ResourceExtensionPaths): void;
-    reload(): Promise<void>;
+    loadProjectTrustExtensions(): Promise<LoadExtensionsResult>;
+    reload(options?: ResourceLoaderReloadOptions): Promise<void>;
     private emptyResolvedPaths;
     private resolvePackageResourcePaths;
     private enabledPackageWorkflowResources;
@@ -193,6 +200,9 @@ export declare class DefaultResourceLoader implements ResourceLoader {
     private loadThemes;
     private loadThemesFromDir;
     private loadThemeFromFile;
+    private resolveExtensionLoadPath;
+    private loadFinalExtensionSet;
+    private addExtensionConflictDiagnostics;
     private loadExtensionFactories;
     private dedupePrompts;
     private dedupeThemes;

package/dist/core/resource-loader.d.ts.map

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{ existsSync, readdirSync, readFileSync, statSync } from \"node:fs\";\nimport { join, resolve, sep } from \"node:path\";\nimport chalk from \"chalk\";\nimport { getAgentDir, getAgentDirs, getProjectConfigDirs } from \"../config.ts\";\nimport { loadThemeFromPath, type Theme } from \"../modes/interactive/theme/theme.ts\";\nimport type { ResourceDiagnostic } from \"./diagnostics.ts\";\n\nexport type { ResourceCollision, ResourceDiagnostic } from \"./diagnostics.ts\";\n\nimport { canonicalizePath, isLocalPath, resolvePath } from \"../utils/paths.ts\";\nimport { createEventBus, type EventBus } from \"./event-bus.ts\";\nimport {\n\tcreateExtensionRuntime,\n\tloadExtensionFromFactory,\n\tloadExtensions,\n\ttype WorkflowResourceProvider,\n} from \"./extensions/loader.ts\";\nimport type { Extension, ExtensionFactory, ExtensionRuntime, LoadExtensionsResult } from \"./extensions/types.ts\";\nimport { DefaultPackageManager, type PathMetadata, type ResolvedPaths, type ResolvedResource } from \"./package-manager.ts\";\nimport type { PromptTemplate } from \"./prompt-templates.ts\";\nimport { loadPromptTemplates } from \"./prompt-templates.ts\";\nimport { SettingsManager } from \"./settings-manager.ts\";\nimport type { Skill } from \"./skills.ts\";\nimport { loadSkills } from \"./skills.ts\";\nimport { createSourceInfo, type SourceInfo } from \"./source-info.ts\";\nimport { endTimingSpan, startTimingSpan } from \"./timings.ts\";\n\nexport interface ResourceExtensionPaths {\n\tskillPaths?: Array<{ path: string; metadata: PathMetadata }>;\n\tpromptPaths?: Array<{ path: string; metadata: PathMetadata }>;\n\tthemePaths?: Array<{ path: string; metadata: PathMetadata }>;\n}\n\nexport interface ResourceLoader {\n\tgetExtensions(): LoadExtensionsResult;\n\tgetSkills(): { skills: Skill[]; diagnostics: ResourceDiagnostic[] };\n\tgetPrompts(): { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] };\n\tgetThemes(): { themes: Theme[]; diagnostics: ResourceDiagnostic[] };\n\tgetAgentsFiles(): { agentsFiles: Array<{ path: string; content: string }> };\n\tgetSystemPrompt(): string | undefined;\n\tgetAppendSystemPrompt(): string[];\n\textendResources(paths: ResourceExtensionPaths): void;\n\treload(): Promise<void>;\n}\n\nfunction resolvePromptInput(input: string | undefined, description: string): string | undefined {\n\tif (!input) {\n\t\treturn undefined;\n\t}\n\n\tif (existsSync(input)) {\n\t\ttry {\n\t\t\treturn readFileSync(input, \"utf-8\");\n\t\t} catch (error) {\n\t\t\tconsole.error(chalk.yellow(`Warning: Could not read ${description} file ${input}: ${error}`));\n\t\t\treturn input;\n\t\t}\n\t}\n\n\treturn input;\n}\n\nfunction loadContextFileFromDir(dir: string): { path: string; content: string } | null {\n\tconst candidates = [\"AGENTS.md\", \"AGENTS.MD\", \"CLAUDE.md\", \"CLAUDE.MD\"];\n\tfor (const filename of candidates) {\n\t\tconst filePath = join(dir, filename);\n\t\tif (existsSync(filePath)) {\n\t\t\ttry {\n\t\t\t\treturn {\n\t\t\t\t\tpath: filePath,\n\t\t\t\t\tcontent: readFileSync(filePath, \"utf-8\"),\n\t\t\t\t};\n\t\t\t} catch (error) {\n\t\t\t\tconsole.error(chalk.yellow(`Warning: Could not read ${filePath}: ${error}`));\n\t\t\t}\n\t\t}\n\t}\n\treturn null;\n}\n\nexport function loadProjectContextFiles(options: {\n\tcwd: string;\n\tagentDir: string;\n}): Array<{ path: string; content: string }> {\n\tconst resolvedCwd = resolvePath(options.cwd);\n\tconst resolvedAgentDir = resolvePath(options.agentDir);\n\n\tconst contextFiles: Array<{ path: string; content: string }> = [];\n\tconst seenPaths = new Set<string>();\n\n\tconst contextAgentDirs = Array.from(\n\t\tnew Set(resolvedAgentDir === getAgentDir() ? getAgentDirs() : [resolvedAgentDir]),\n\t).reverse();\n\tfor (const agentDir of contextAgentDirs) {\n\t\tconst context = loadContextFileFromDir(agentDir);\n\t\tif (context && !seenPaths.has(context.path)) {\n\t\t\tcontextFiles.push(context);\n\t\t\tseenPaths.add(context.path);\n\t\t}\n\t}\n\n\tconst ancestorContextFiles: Array<{ path: string; content: string }> = [];\n\n\tlet currentDir = resolvedCwd;\n\tconst root = resolve(\"/\");\n\n\twhile (true) {\n\t\tconst contextFile = loadContextFileFromDir(currentDir);\n\t\tif (contextFile && !seenPaths.has(contextFile.path)) {\n\t\t\tancestorContextFiles.unshift(contextFile);\n\t\t\tseenPaths.add(contextFile.path);\n\t\t}\n\n\t\tif (currentDir === root) break;\n\n\t\tconst parentDir = resolve(currentDir, \"..\");\n\t\tif (parentDir === currentDir) break;\n\t\tcurrentDir = parentDir;\n\t}\n\n\tcontextFiles.push(...ancestorContextFiles);\n\n\treturn contextFiles;\n}\n\nexport interface DefaultResourceLoaderOptions {\n\tcwd: string;\n\tagentDir: string;\n\tsettingsManager?: SettingsManager;\n\teventBus?: EventBus;\n\tadditionalExtensionPaths?: string[];\n\tadditionalSkillPaths?: string[];\n\tadditionalPromptTemplatePaths?: string[];\n\tadditionalThemePaths?: string[];\n\tbuiltinPackagePaths?: string[];\n\textensionFactories?: ExtensionFactory[];\n\tnoExtensions?: boolean;\n\tnoSkills?: boolean;\n\tnoPromptTemplates?: boolean;\n\tnoThemes?: boolean;\n\tnoContextFiles?: boolean;\n\tsystemPrompt?: string;\n\tappendSystemPrompt?: string[];\n\textensionsOverride?: (base: LoadExtensionsResult) => LoadExtensionsResult;\n\tskillsOverride?: (base: { skills: Skill[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tskills: Skill[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tpromptsOverride?: (base: { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tprompts: PromptTemplate[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tthemesOverride?: (base: { themes: Theme[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tthemes: Theme[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tagentsFilesOverride?: (base: { agentsFiles: Array<{ path: string; content: string }> }) => {\n\t\tagentsFiles: Array<{ path: string; content: string }>;\n\t};\n\tsystemPromptOverride?: (base: string | undefined) => string | undefined;\n\tappendSystemPromptOverride?: (base: string[]) => string[];\n}\n\nexport class DefaultResourceLoader implements ResourceLoader {\n\tprivate cwd: string;\n\tprivate agentDir: string;\n\tprivate settingsManager: SettingsManager;\n\tprivate eventBus: EventBus;\n\tprivate packageManager: DefaultPackageManager;\n\tprivate additionalExtensionPaths: string[];\n\tprivate additionalSkillPaths: string[];\n\tprivate additionalPromptTemplatePaths: string[];\n\tprivate additionalThemePaths: string[];\n\tprivate builtinPackagePaths: string[];\n\tprivate extensionFactories: ExtensionFactory[];\n\tprivate noExtensions: boolean;\n\tprivate noSkills: boolean;\n\tprivate noPromptTemplates: boolean;\n\tprivate noThemes: boolean;\n\tprivate noContextFiles: boolean;\n\tprivate systemPromptSource?: string;\n\tprivate appendSystemPromptSource?: string[];\n\tprivate extensionsOverride?: (base: LoadExtensionsResult) => LoadExtensionsResult;\n\tprivate skillsOverride?: (base: { skills: Skill[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tskills: Skill[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tprivate promptsOverride?: (base: { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tprompts: PromptTemplate[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tprivate themesOverride?: (base: { themes: Theme[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tthemes: Theme[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tprivate agentsFilesOverride?: (base: { agentsFiles: Array<{ path: string; content: string }> }) => {\n\t\tagentsFiles: Array<{ path: string; content: string }>;\n\t};\n\tprivate systemPromptOverride?: (base: string | undefined) => string | undefined;\n\tprivate appendSystemPromptOverride?: (base: string[]) => string[];\n\n\tprivate extensionsResult: LoadExtensionsResult;\n\tprivate skills: Skill[];\n\tprivate skillDiagnostics: ResourceDiagnostic[];\n\tprivate prompts: PromptTemplate[];\n\tprivate promptDiagnostics: ResourceDiagnostic[];\n\tprivate themes: Theme[];\n\tprivate themeDiagnostics: ResourceDiagnostic[];\n\tprivate agentsFiles: Array<{ path: string; content: string }>;\n\tprivate systemPrompt?: string;\n\tprivate appendSystemPrompt: string[];\n\tprivate workflowResources: ResolvedResource[];\n\tprivate lastSkillPaths: string[];\n\tprivate extensionSkillSourceInfos: Map<string, SourceInfo>;\n\tprivate extensionPromptSourceInfos: Map<string, SourceInfo>;\n\tprivate extensionThemeSourceInfos: Map<string, SourceInfo>;\n\tprivate lastPromptPaths: string[];\n\tprivate lastThemePaths: string[];\n\n\tconstructor(options: DefaultResourceLoaderOptions) {\n\t\tthis.cwd = resolvePath(options.cwd);\n\t\tthis.agentDir = resolvePath(options.agentDir);\n\t\tthis.settingsManager = options.settingsManager ?? SettingsManager.create(this.cwd, this.agentDir);\n\t\tthis.eventBus = options.eventBus ?? createEventBus();\n\t\tthis.packageManager = new DefaultPackageManager({\n\t\t\tcwd: this.cwd,\n\t\t\tagentDir: this.agentDir,\n\t\t\tsettingsManager: this.settingsManager,\n\t\t});\n\t\tthis.additionalExtensionPaths = options.additionalExtensionPaths ?? [];\n\t\tthis.additionalSkillPaths = options.additionalSkillPaths ?? [];\n\t\tthis.additionalPromptTemplatePaths = options.additionalPromptTemplatePaths ?? [];\n\t\tthis.additionalThemePaths = options.additionalThemePaths ?? [];\n\t\tthis.builtinPackagePaths = options.builtinPackagePaths ?? [];\n\t\tthis.extensionFactories = options.extensionFactories ?? [];\n\t\tthis.noExtensions = options.noExtensions ?? false;\n\t\tthis.noSkills = options.noSkills ?? false;\n\t\tthis.noPromptTemplates = options.noPromptTemplates ?? false;\n\t\tthis.noThemes = options.noThemes ?? false;\n\t\tthis.noContextFiles = options.noContextFiles ?? false;\n\t\tthis.systemPromptSource = options.systemPrompt;\n\t\tthis.appendSystemPromptSource = options.appendSystemPrompt;\n\t\tthis.extensionsOverride = options.extensionsOverride;\n\t\tthis.skillsOverride = options.skillsOverride;\n\t\tthis.promptsOverride = options.promptsOverride;\n\t\tthis.themesOverride = options.themesOverride;\n\t\tthis.agentsFilesOverride = options.agentsFilesOverride;\n\t\tthis.systemPromptOverride = options.systemPromptOverride;\n\t\tthis.appendSystemPromptOverride = options.appendSystemPromptOverride;\n\n\t\tthis.extensionsResult = { extensions: [], errors: [], runtime: createExtensionRuntime() };\n\t\tthis.skills = [];\n\t\tthis.skillDiagnostics = [];\n\t\tthis.prompts = [];\n\t\tthis.promptDiagnostics = [];\n\t\tthis.themes = [];\n\t\tthis.themeDiagnostics = [];\n\t\tthis.agentsFiles = [];\n\t\tthis.appendSystemPrompt = [];\n\t\tthis.workflowResources = [];\n\t\tthis.lastSkillPaths = [];\n\t\tthis.extensionSkillSourceInfos = new Map();\n\t\tthis.extensionPromptSourceInfos = new Map();\n\t\tthis.extensionThemeSourceInfos = new Map();\n\t\tthis.lastPromptPaths = [];\n\t\tthis.lastThemePaths = [];\n\t}\n\n\tgetExtensions(): LoadExtensionsResult {\n\t\treturn this.extensionsResult;\n\t}\n\n\tgetSkills(): { skills: Skill[]; diagnostics: ResourceDiagnostic[] } {\n\t\treturn { skills: this.skills, diagnostics: this.skillDiagnostics };\n\t}\n\n\tgetPrompts(): { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] } {\n\t\treturn { prompts: this.prompts, diagnostics: this.promptDiagnostics };\n\t}\n\n\tgetThemes(): { themes: Theme[]; diagnostics: ResourceDiagnostic[] } {\n\t\treturn { themes: this.themes, diagnostics: this.themeDiagnostics };\n\t}\n\n\tgetAgentsFiles(): { agentsFiles: Array<{ path: string; content: string }> } {\n\t\treturn { agentsFiles: this.agentsFiles };\n\t}\n\n\tgetSystemPrompt(): string | undefined {\n\t\treturn this.systemPrompt;\n\t}\n\n\tgetAppendSystemPrompt(): string[] {\n\t\treturn this.appendSystemPrompt;\n\t}\n\n\tgetWorkflowResources(): ResolvedResource[] {\n\t\treturn [...this.workflowResources];\n\t}\n\n\tasync refreshWorkflowResources(): Promise<ResolvedResource[]> {\n\t\tconst { resolvedPaths, cliExtensionPaths, builtinPackagePaths } = await this.resolvePackageResourcePaths();\n\t\tconst workflowResources = this.collectWorkflowResources(\n\t\t\tresolvedPaths,\n\t\t\tcliExtensionPaths,\n\t\t\tbuiltinPackagePaths,\n\t\t);\n\t\tthis.workflowResources = workflowResources;\n\t\treturn [...this.workflowResources];\n\t}\n\n\textendResources(paths: ResourceExtensionPaths): void {\n\t\tconst skillPaths = this.normalizeExtensionPaths(paths.skillPaths ?? []);\n\t\tconst promptPaths = this.normalizeExtensionPaths(paths.promptPaths ?? []);\n\t\tconst themePaths = this.normalizeExtensionPaths(paths.themePaths ?? []);\n\n\t\tfor (const entry of skillPaths) {\n\t\t\tthis.extensionSkillSourceInfos.set(entry.path, createSourceInfo(entry.path, entry.metadata));\n\t\t}\n\t\tfor (const entry of promptPaths) {\n\t\t\tthis.extensionPromptSourceInfos.set(entry.path, createSourceInfo(entry.path, entry.metadata));\n\t\t}\n\t\tfor (const entry of themePaths) {\n\t\t\tthis.extensionThemeSourceInfos.set(entry.path, createSourceInfo(entry.path, entry.metadata));\n\t\t}\n\n\t\tif (skillPaths.length > 0) {\n\t\t\tthis.lastSkillPaths = this.mergePaths(\n\t\t\t\tthis.lastSkillPaths,\n\t\t\t\tskillPaths.map((entry) => entry.path),\n\t\t\t);\n\t\t\tthis.updateSkillsFromPaths(this.lastSkillPaths);\n\t\t}\n\n\t\tif (promptPaths.length > 0) {\n\t\t\tthis.lastPromptPaths = this.mergePaths(\n\t\t\t\tthis.lastPromptPaths,\n\t\t\t\tpromptPaths.map((entry) => entry.path),\n\t\t\t);\n\t\t\tthis.updatePromptsFromPaths(this.lastPromptPaths);\n\t\t}\n\n\t\tif (themePaths.length > 0) {\n\t\t\tthis.lastThemePaths = this.mergePaths(\n\t\t\t\tthis.lastThemePaths,\n\t\t\t\tthemePaths.map((entry) => entry.path),\n\t\t\t);\n\t\t\tthis.updateThemesFromPaths(this.lastThemePaths);\n\t\t}\n\t}\n\n\tasync reload(): Promise<void> {\n\t\tconst resolveSpan = startTimingSpan(\"DefaultResourceLoader.reload.resolvePackageResourcePaths\");\n\t\tconst { resolvedPaths, cliExtensionPaths, builtinPackagePaths } = await this.resolvePackageResourcePaths();\n\t\tendTimingSpan(resolveSpan);\n\t\tconst metadataByPath = new Map<string, PathMetadata>();\n\n\t\tthis.extensionSkillSourceInfos = new Map();\n\t\tthis.extensionPromptSourceInfos = new Map();\n\t\tthis.extensionThemeSourceInfos = new Map();\n\n\t\t// Helper to extract enabled paths and store metadata\n\t\tconst getEnabledResources = (\n\t\t\tresources: Array<{ path: string; enabled: boolean; metadata: PathMetadata }>,\n\t\t): Array<{ path: string; enabled: boolean; metadata: PathMetadata }> => {\n\t\t\tfor (const r of resources) {\n\t\t\t\tif (!metadataByPath.has(r.path)) {\n\t\t\t\t\tmetadataByPath.set(r.path, r.metadata);\n\t\t\t\t}\n\t\t\t}\n\t\t\treturn resources.filter((r) => r.enabled);\n\t\t};\n\n\t\tconst getEnabledPaths = (\n\t\t\tresources: Array<{ path: string; enabled: boolean; metadata: PathMetadata }>,\n\t\t): string[] => getEnabledResources(resources).map((r) => r.path);\n\t\tconst enabledExtensions = getEnabledPaths(resolvedPaths.extensions);\n\t\tconst enabledSkillResources = getEnabledResources(resolvedPaths.skills);\n\t\tconst enabledPrompts = getEnabledPaths(resolvedPaths.prompts);\n\t\tconst enabledThemes = getEnabledPaths(resolvedPaths.themes);\n\n\t\tconst builtinEnabledExtensions = this.noExtensions\n\t\t\t? []\n\t\t\t: getEnabledPaths(builtinPackagePaths.extensions);\n\t\tconst builtinEnabledSkillResources = this.noSkills ? [] : getEnabledResources(builtinPackagePaths.skills);\n\t\tconst builtinEnabledPrompts = this.noPromptTemplates ? [] : getEnabledPaths(builtinPackagePaths.prompts);\n\t\tconst builtinEnabledThemes = this.noThemes ? [] : getEnabledPaths(builtinPackagePaths.themes);\n\n\t\tconst mapSkillPath = (resource: { path: string; metadata: PathMetadata }): string => {\n\t\t\tif (resource.metadata.source !== \"auto\" && resource.metadata.origin !== \"package\") {\n\t\t\t\treturn resource.path;\n\t\t\t}\n\t\t\ttry {\n\t\t\t\tconst stats = statSync(resource.path);\n\t\t\t\tif (!stats.isDirectory()) {\n\t\t\t\t\treturn resource.path;\n\t\t\t\t}\n\t\t\t} catch {\n\t\t\t\treturn resource.path;\n\t\t\t}\n\t\t\tconst skillFile = join(resource.path, \"SKILL.md\");\n\t\t\tif (existsSync(skillFile)) {\n\t\t\t\tif (!metadataByPath.has(skillFile)) {\n\t\t\t\t\tmetadataByPath.set(skillFile, resource.metadata);\n\t\t\t\t}\n\t\t\t\treturn skillFile;\n\t\t\t}\n\t\t\treturn resource.path;\n\t\t};\n\n\t\tconst enabledSkills = enabledSkillResources.map(mapSkillPath);\n\t\tconst builtinEnabledSkills = builtinEnabledSkillResources.map(mapSkillPath);\n\n\t\t// Add CLI paths metadata\n\t\tfor (const r of cliExtensionPaths.extensions) {\n\t\t\tif (!metadataByPath.has(r.path)) {\n\t\t\t\tmetadataByPath.set(r.path, { source: \"cli\", scope: \"temporary\", origin: \"top-level\" });\n\t\t\t}\n\t\t}\n\t\tfor (const r of cliExtensionPaths.skills) {\n\t\t\tif (!metadataByPath.has(r.path)) {\n\t\t\t\tmetadataByPath.set(r.path, { source: \"cli\", scope: \"temporary\", origin: \"top-level\" });\n\t\t\t}\n\t\t}\n\n\t\tconst cliEnabledExtensions = getEnabledPaths(cliExtensionPaths.extensions);\n\t\tconst cliEnabledSkills = getEnabledPaths(cliExtensionPaths.skills);\n\t\tconst cliEnabledPrompts = getEnabledPaths(cliExtensionPaths.prompts);\n\t\tconst cliEnabledThemes = getEnabledPaths(cliExtensionPaths.themes);\n\t\tconst workflowResources = this.collectWorkflowResources(\n\t\t\tresolvedPaths,\n\t\t\tcliExtensionPaths,\n\t\t\tbuiltinPackagePaths,\n\t\t);\n\t\tthis.workflowResources = workflowResources;\n\t\tconst workflowResourceProvider = this.createWorkflowResourceProvider();\n\n\t\tconst extensionPaths = this.noExtensions\n\t\t\t? cliEnabledExtensions\n\t\t\t: this.mergePaths(cliEnabledExtensions, [...enabledExtensions, ...builtinEnabledExtensions]);\n\n\t\tconst loadExtensionsSpan = startTimingSpan(\"DefaultResourceLoader.reload.loadExtensions\");\n\t\tconst extensionsResult = await loadExtensions(extensionPaths, this.cwd, this.eventBus, workflowResourceProvider);\n\t\tendTimingSpan(loadExtensionsSpan);\n\t\tconst inlineExtensionsSpan = startTimingSpan(\"DefaultResourceLoader.reload.loadInlineExtensionFactories\");\n\t\tconst inlineExtensions = await this.loadExtensionFactories(extensionsResult.runtime, workflowResourceProvider);\n\t\tendTimingSpan(inlineExtensionsSpan);\n\t\textensionsResult.extensions.push(...inlineExtensions.extensions);\n\t\textensionsResult.errors.push(...inlineExtensions.errors);\n\n\t\t// Detect extension conflicts (tools, commands, flags with same names from different extensions)\n\t\t// Keep all extensions loaded. Conflicts are reported as diagnostics, and precedence is handled by load order.\n\t\tconst conflicts = this.detectExtensionConflicts(extensionsResult.extensions);\n\t\tfor (const conflict of conflicts) {\n\t\t\textensionsResult.errors.push({ path: conflict.path, error: conflict.message });\n\t\t}\n\n\t\tfor (const p of this.additionalExtensionPaths) {\n\t\t\tif (isLocalPath(p)) {\n\t\t\t\tconst resolved = this.resolveResourcePath(p);\n\t\t\t\tif (!existsSync(resolved)) {\n\t\t\t\t\textensionsResult.errors.push({ path: resolved, error: `Extension path does not exist: ${resolved}` });\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\t\tthis.extensionsResult = this.extensionsOverride ? this.extensionsOverride(extensionsResult) : extensionsResult;\n\t\tthis.applyExtensionSourceInfo(this.extensionsResult.extensions, metadataByPath);\n\n\t\tconst skillPaths = this.noSkills\n\t\t\t? this.mergePaths(cliEnabledSkills, this.additionalSkillPaths)\n\t\t\t: this.mergePaths(\n\t\t\t\t\t[...cliEnabledSkills, ...enabledSkills, ...builtinEnabledSkills],\n\t\t\t\t\tthis.additionalSkillPaths,\n\t\t\t\t);\n\n\t\tthis.lastSkillPaths = skillPaths;\n\t\tconst skillsSpan = startTimingSpan(\"DefaultResourceLoader.reload.updateSkillsFromPaths\");\n\t\tthis.updateSkillsFromPaths(skillPaths, metadataByPath);\n\t\tendTimingSpan(skillsSpan);\n\t\tfor (const p of this.additionalSkillPaths) {\n\t\t\tif (isLocalPath(p)) {\n\t\t\t\tconst resolved = this.resolveResourcePath(p);\n\t\t\t\tif (!existsSync(resolved) && !this.skillDiagnostics.some((d) => d.path === resolved)) {\n\t\t\t\t\tthis.skillDiagnostics.push({ type: \"error\", message: \"Skill path does not exist\", path: resolved });\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\n\t\tconst promptPaths = this.noPromptTemplates\n\t\t\t? this.mergePaths(cliEnabledPrompts, this.additionalPromptTemplatePaths)\n\t\t\t: this.mergePaths(\n\t\t\t\t\t[...cliEnabledPrompts, ...enabledPrompts, ...builtinEnabledPrompts],\n\t\t\t\t\tthis.additionalPromptTemplatePaths,\n\t\t\t\t);\n\n\t\tthis.lastPromptPaths = promptPaths;\n\t\tconst promptsSpan = startTimingSpan(\"DefaultResourceLoader.reload.updatePromptsFromPaths\");\n\t\tthis.updatePromptsFromPaths(promptPaths, metadataByPath);\n\t\tendTimingSpan(promptsSpan);\n\t\tfor (const p of this.additionalPromptTemplatePaths) {\n\t\t\tif (isLocalPath(p)) {\n\t\t\t\tconst resolved = this.resolveResourcePath(p);\n\t\t\t\tif (!existsSync(resolved) && !this.promptDiagnostics.some((d) => d.path === resolved)) {\n\t\t\t\t\tthis.promptDiagnostics.push({\n\t\t\t\t\t\ttype: \"error\",\n\t\t\t\t\t\tmessage: \"Prompt template path does not exist\",\n\t\t\t\t\t\tpath: resolved,\n\t\t\t\t\t});\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\n\t\tconst themePaths = this.noThemes\n\t\t\t? this.mergePaths(cliEnabledThemes, this.additionalThemePaths)\n\t\t\t: this.mergePaths(\n\t\t\t\t\t[...cliEnabledThemes, ...enabledThemes, ...builtinEnabledThemes],\n\t\t\t\t\tthis.additionalThemePaths,\n\t\t\t\t);\n\n\t\tthis.lastThemePaths = themePaths;\n\t\tconst themesSpan = startTimingSpan(\"DefaultResourceLoader.reload.updateThemesFromPaths\");\n\t\tthis.updateThemesFromPaths(themePaths, metadataByPath);\n\t\tendTimingSpan(themesSpan);\n\t\tfor (const p of this.additionalThemePaths) {\n\t\t\tconst resolved = this.resolveResourcePath(p);\n\t\t\tif (!existsSync(resolved) && !this.themeDiagnostics.some((d) => d.path === resolved)) {\n\t\t\t\tthis.themeDiagnostics.push({ type: \"error\", message: \"Theme path does not exist\", path: resolved });\n\t\t\t}\n\t\t}\n\n\t\tconst contextFilesSpan = startTimingSpan(\"DefaultResourceLoader.reload.loadProjectContextFiles\");\n\t\tconst agentsFiles = {\n\t\t\tagentsFiles: this.noContextFiles ? [] : loadProjectContextFiles({ cwd: this.cwd, agentDir: this.agentDir }),\n\t\t};\n\t\tendTimingSpan(contextFilesSpan);\n\t\tconst resolvedAgentsFiles = this.agentsFilesOverride ? this.agentsFilesOverride(agentsFiles) : agentsFiles;\n\t\tthis.agentsFiles = resolvedAgentsFiles.agentsFiles;\n\n\t\tconst promptFilesSpan = startTimingSpan(\"DefaultResourceLoader.reload.resolvePromptFiles\");\n\t\tconst baseSystemPrompt = resolvePromptInput(\n\t\t\tthis.systemPromptSource ?? this.discoverSystemPromptFile(),\n\t\t\t\"system prompt\",\n\t\t);\n\t\tthis.systemPrompt = this.systemPromptOverride ? this.systemPromptOverride(baseSystemPrompt) : baseSystemPrompt;\n\n\t\tconst appendSources =\n\t\t\tthis.appendSystemPromptSource ??\n\t\t\t(this.discoverAppendSystemPromptFile() ? [this.discoverAppendSystemPromptFile()!] : []);\n\t\tconst baseAppend = appendSources\n\t\t\t.map((s) => resolvePromptInput(s, \"append system prompt\"))\n\t\t\t.filter((s): s is string => s !== undefined);\n\t\tthis.appendSystemPrompt = this.appendSystemPromptOverride\n\t\t\t? this.appendSystemPromptOverride(baseAppend)\n\t\t\t: baseAppend;\n\t\tendTimingSpan(promptFilesSpan);\n\t}\n\n\tprivate emptyResolvedPaths(): ResolvedPaths {\n\t\treturn { extensions: [], skills: [], prompts: [], themes: [], workflows: [] };\n\t}\n\n\tprivate async resolvePackageResourcePaths(): Promise<{\n\t\tresolvedPaths: ResolvedPaths;\n\t\tcliExtensionPaths: ResolvedPaths;\n\t\tbuiltinPackagePaths: ResolvedPaths;\n\t}> {\n\t\tawait this.settingsManager.reload();\n\t\tconst resolvedPaths = await this.packageManager.resolve();\n\t\tconst cliExtensionPaths = await this.packageManager.resolveExtensionSources(this.additionalExtensionPaths, {\n\t\t\ttemporary: true,\n\t\t});\n\t\tconst builtinPackagePaths =\n\t\t\tthis.builtinPackagePaths.length > 0\n\t\t\t\t? await this.packageManager.resolveExtensionSources(this.builtinPackagePaths, { temporary: true })\n\t\t\t\t: this.emptyResolvedPaths();\n\t\treturn { resolvedPaths, cliExtensionPaths, builtinPackagePaths };\n\t}\n\n\tprivate enabledPackageWorkflowResources(resources: ResolvedResource[]): ResolvedResource[] {\n\t\treturn resources.filter((resource) => resource.enabled && resource.metadata.origin === \"package\");\n\t}\n\n\tprivate collectWorkflowResources(\n\t\tresolvedPaths: ResolvedPaths,\n\t\tcliExtensionPaths: ResolvedPaths,\n\t\tbuiltinPackagePaths: ResolvedPaths,\n\t): ResolvedResource[] {\n\t\treturn [\n\t\t\t...this.enabledPackageWorkflowResources(cliExtensionPaths.workflows),\n\t\t\t...this.enabledPackageWorkflowResources(resolvedPaths.workflows),\n\t\t\t...this.enabledPackageWorkflowResources(builtinPackagePaths.workflows),\n\t\t];\n\t}\n\n\tprivate createWorkflowResourceProvider(): WorkflowResourceProvider {\n\t\treturn {\n\t\t\tget: () => this.workflowResources,\n\t\t\trefresh: () => this.refreshWorkflowResources(),\n\t\t};\n\t}\n\n\tprivate normalizeExtensionPaths(\n\t\tentries: Array<{ path: string; metadata: PathMetadata }>,\n\t): Array<{ path: string; metadata: PathMetadata }> {\n\t\treturn entries.map((entry) => {\n\t\t\tconst metadata = entry.metadata.baseDir\n\t\t\t\t? { ...entry.metadata, baseDir: this.resolveResourcePath(entry.metadata.baseDir) }\n\t\t\t\t: entry.metadata;\n\t\t\treturn {\n\t\t\t\tpath: this.resolveResourcePath(entry.path),\n\t\t\t\tmetadata,\n\t\t\t};\n\t\t});\n\t}\n\n\tprivate updateSkillsFromPaths(skillPaths: string[], metadataByPath?: Map<string, PathMetadata>): void {\n\t\tlet skillsResult: { skills: Skill[]; diagnostics: ResourceDiagnostic[] };\n\t\tif (this.noSkills && skillPaths.length === 0) {\n\t\t\tskillsResult = { skills: [], diagnostics: [] };\n\t\t} else {\n\t\t\tskillsResult = loadSkills({\n\t\t\t\tcwd: this.cwd,\n\t\t\t\tagentDir: this.agentDir,\n\t\t\t\tskillPaths,\n\t\t\t\tincludeDefaults: false,\n\t\t\t});\n\t\t}\n\t\tconst resolvedSkills = this.skillsOverride ? this.skillsOverride(skillsResult) : skillsResult;\n\t\tthis.skills = resolvedSkills.skills.map((skill) => ({\n\t\t\t...skill,\n\t\t\tsourceInfo:\n\t\t\t\tthis.findSourceInfoForPath(skill.filePath, this.extensionSkillSourceInfos, metadataByPath) ??\n\t\t\t\tskill.sourceInfo ??\n\t\t\t\tthis.getDefaultSourceInfoForPath(skill.filePath),\n\t\t}));\n\t\tthis.skillDiagnostics = resolvedSkills.diagnostics;\n\t}\n\n\tprivate updatePromptsFromPaths(promptPaths: string[], metadataByPath?: Map<string, PathMetadata>): void {\n\t\tlet promptsResult: { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] };\n\t\tif (this.noPromptTemplates && promptPaths.length === 0) {\n\t\t\tpromptsResult = { prompts: [], diagnostics: [] };\n\t\t} else {\n\t\t\tconst allPrompts = loadPromptTemplates({\n\t\t\t\tcwd: this.cwd,\n\t\t\t\tagentDir: this.agentDir,\n\t\t\t\tpromptPaths,\n\t\t\t\tincludeDefaults: false,\n\t\t\t});\n\t\t\tpromptsResult = this.dedupePrompts(allPrompts);\n\t\t}\n\t\tconst resolvedPrompts = this.promptsOverride ? this.promptsOverride(promptsResult) : promptsResult;\n\t\tthis.prompts = resolvedPrompts.prompts.map((prompt) => ({\n\t\t\t...prompt,\n\t\t\tsourceInfo:\n\t\t\t\tthis.findSourceInfoForPath(prompt.filePath, this.extensionPromptSourceInfos, metadataByPath) ??\n\t\t\t\tprompt.sourceInfo ??\n\t\t\t\tthis.getDefaultSourceInfoForPath(prompt.filePath),\n\t\t}));\n\t\tthis.promptDiagnostics = resolvedPrompts.diagnostics;\n\t}\n\n\tprivate updateThemesFromPaths(themePaths: string[], metadataByPath?: Map<string, PathMetadata>): void {\n\t\tlet themesResult: { themes: Theme[]; diagnostics: ResourceDiagnostic[] };\n\t\tif (this.noThemes && themePaths.length === 0) {\n\t\t\tthemesResult = { themes: [], diagnostics: [] };\n\t\t} else {\n\t\t\tconst loaded = this.loadThemes(themePaths, false);\n\t\t\tconst deduped = this.dedupeThemes(loaded.themes);\n\t\t\tthemesResult = { themes: deduped.themes, diagnostics: [...loaded.diagnostics, ...deduped.diagnostics] };\n\t\t}\n\t\tconst resolvedThemes = this.themesOverride ? this.themesOverride(themesResult) : themesResult;\n\t\tthis.themes = resolvedThemes.themes.map((theme) => {\n\t\t\tconst sourcePath = theme.sourcePath;\n\t\t\ttheme.sourceInfo = sourcePath\n\t\t\t\t? (this.findSourceInfoForPath(sourcePath, this.extensionThemeSourceInfos, metadataByPath) ??\n\t\t\t\t\ttheme.sourceInfo ??\n\t\t\t\t\tthis.getDefaultSourceInfoForPath(sourcePath))\n\t\t\t\t: theme.sourceInfo;\n\t\t\treturn theme;\n\t\t});\n\t\tthis.themeDiagnostics = resolvedThemes.diagnostics;\n\t}\n\n\tprivate applyExtensionSourceInfo(extensions: Extension[], metadataByPath: Map<string, PathMetadata>): void {\n\t\tfor (const extension of extensions) {\n\t\t\textension.sourceInfo =\n\t\t\t\tthis.findSourceInfoForPath(extension.path, undefined, metadataByPath) ??\n\t\t\t\tthis.getDefaultSourceInfoForPath(extension.path);\n\t\t\tfor (const command of extension.commands.values()) {\n\t\t\t\tcommand.sourceInfo = extension.sourceInfo;\n\t\t\t}\n\t\t\tfor (const tool of extension.tools.values()) {\n\t\t\t\ttool.sourceInfo = extension.sourceInfo;\n\t\t\t}\n\t\t}\n\t}\n\n\tprivate findSourceInfoForPath(\n\t\tresourcePath: string,\n\t\textraSourceInfos?: Map<string, SourceInfo>,\n\t\tmetadataByPath?: Map<string, PathMetadata>,\n\t): SourceInfo | undefined {\n\t\tif (!resourcePath) {\n\t\t\treturn undefined;\n\t\t}\n\n\t\tif (resourcePath.startsWith(\"<\")) {\n\t\t\treturn this.getDefaultSourceInfoForPath(resourcePath);\n\t\t}\n\n\t\tconst normalizedResourcePath = resolve(resourcePath);\n\t\tif (extraSourceInfos) {\n\t\t\tfor (const [sourcePath, sourceInfo] of extraSourceInfos.entries()) {\n\t\t\t\tconst normalizedSourcePath = resolve(sourcePath);\n\t\t\t\tif (\n\t\t\t\t\tnormalizedResourcePath === normalizedSourcePath ||\n\t\t\t\t\tnormalizedResourcePath.startsWith(`${normalizedSourcePath}${sep}`)\n\t\t\t\t) {\n\t\t\t\t\treturn { ...sourceInfo, path: resourcePath };\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\n\t\tif (metadataByPath) {\n\t\t\tconst exact = metadataByPath.get(normalizedResourcePath) ?? metadataByPath.get(resourcePath);\n\t\t\tif (exact) {\n\t\t\t\treturn createSourceInfo(resourcePath, exact);\n\t\t\t}\n\n\t\t\tfor (const [sourcePath, metadata] of metadataByPath.entries()) {\n\t\t\t\tconst normalizedSourcePath = resolve(sourcePath);\n\t\t\t\tif (\n\t\t\t\t\tnormalizedResourcePath === normalizedSourcePath ||\n\t\t\t\t\tnormalizedResourcePath.startsWith(`${normalizedSourcePath}${sep}`)\n\t\t\t\t) {\n\t\t\t\t\treturn createSourceInfo(resourcePath, metadata);\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\n\t\treturn undefined;\n\t}\n\n\tprivate getDefaultSourceInfoForPath(filePath: string): SourceInfo {\n\t\tif (filePath.startsWith(\"<\") && filePath.endsWith(\">\")) {\n\t\t\treturn {\n\t\t\t\tpath: filePath,\n\t\t\t\tsource: filePath.slice(1, -1).split(\":\")[0] || \"temporary\",\n\t\t\t\tscope: \"temporary\",\n\t\t\t\torigin: \"top-level\",\n\t\t\t};\n\t\t}\n\n\t\tconst normalizedPath = resolve(filePath);\n\t\tconst agentRoots = this.getAgentDirs().flatMap((agentDir) => [\n\t\t\tjoin(agentDir, \"skills\"),\n\t\t\tjoin(agentDir, \"prompts\"),\n\t\t\tjoin(agentDir, \"themes\"),\n\t\t\tjoin(agentDir, \"extensions\"),\n\t\t]);\n\t\tconst projectRoots = getProjectConfigDirs(this.cwd).flatMap((configDir) => [\n\t\t\tjoin(configDir, \"skills\"),\n\t\t\tjoin(configDir, \"prompts\"),\n\t\t\tjoin(configDir, \"themes\"),\n\t\t\tjoin(configDir, \"extensions\"),\n\t\t]);\n\n\t\tfor (const root of agentRoots) {\n\t\t\tif (this.isUnderPath(normalizedPath, root)) {\n\t\t\t\treturn { path: filePath, source: \"local\", scope: \"user\", origin: \"top-level\", baseDir: root };\n\t\t\t}\n\t\t}\n\n\t\tfor (const root of projectRoots) {\n\t\t\tif (this.isUnderPath(normalizedPath, root)) {\n\t\t\t\treturn { path: filePath, source: \"local\", scope: \"project\", origin: \"top-level\", baseDir: root };\n\t\t\t}\n\t\t}\n\n\t\treturn {\n\t\t\tpath: filePath,\n\t\t\tsource: \"local\",\n\t\t\tscope: \"temporary\",\n\t\t\torigin: \"top-level\",\n\t\t\tbaseDir: statSync(normalizedPath).isDirectory() ? normalizedPath : resolve(normalizedPath, \"..\"),\n\t\t};\n\t}\n\n\tprivate mergePaths(primary: string[], additional: string[]): string[] {\n\t\tconst merged: string[] = [];\n\t\tconst seen = new Set<string>();\n\n\t\tfor (const p of [...primary, ...additional]) {\n\t\t\tconst resolved = this.resolveResourcePath(p);\n\t\t\tconst canonicalPath = canonicalizePath(resolved);\n\t\t\tif (seen.has(canonicalPath)) continue;\n\t\t\tseen.add(canonicalPath);\n\t\t\tmerged.push(resolved);\n\t\t}\n\n\t\treturn merged;\n\t}\n\n\tprivate resolveResourcePath(p: string): string {\n\t\treturn resolvePath(p, this.cwd, { trim: true });\n\t}\n\n\tprivate loadThemes(\n\t\tpaths: string[],\n\t\tincludeDefaults: boolean = true,\n\t): {\n\t\tthemes: Theme[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t} {\n\t\tconst themes: Theme[] = [];\n\t\tconst diagnostics: ResourceDiagnostic[] = [];\n\t\tif (includeDefaults) {\n\t\t\tconst defaultDirs = [\n\t\t\t\t...this.getAgentDirs().map((agentDir) => join(agentDir, \"themes\")),\n\t\t\t\t...getProjectConfigDirs(this.cwd).map((configDir) => join(configDir, \"themes\")),\n\t\t\t];\n\n\t\t\tfor (const dir of defaultDirs) {\n\t\t\t\tthis.loadThemesFromDir(dir, themes, diagnostics);\n\t\t\t}\n\t\t}\n\n\t\tfor (const p of paths) {\n\t\t\tconst resolved = this.resolveResourcePath(p);\n\t\t\tif (!existsSync(resolved)) {\n\t\t\t\tdiagnostics.push({ type: \"warning\", message: \"theme path does not exist\", path: resolved });\n\t\t\t\tcontinue;\n\t\t\t}\n\n\t\t\ttry {\n\t\t\t\tconst stats = statSync(resolved);\n\t\t\t\tif (stats.isDirectory()) {\n\t\t\t\t\tthis.loadThemesFromDir(resolved, themes, diagnostics);\n\t\t\t\t} else if (stats.isFile() && resolved.endsWith(\".json\")) {\n\t\t\t\t\tthis.loadThemeFromFile(resolved, themes, diagnostics);\n\t\t\t\t} else {\n\t\t\t\t\tdiagnostics.push({ type: \"warning\", message: \"theme path is not a json file\", path: resolved });\n\t\t\t\t}\n\t\t\t} catch (error) {\n\t\t\t\tconst message = error instanceof Error ? error.message : \"failed to read theme path\";\n\t\t\t\tdiagnostics.push({ type: \"warning\", message, path: resolved });\n\t\t\t}\n\t\t}\n\n\t\treturn { themes, diagnostics };\n\t}\n\n\tprivate loadThemesFromDir(dir: string, themes: Theme[], diagnostics: ResourceDiagnostic[]): void {\n\t\tif (!existsSync(dir)) {\n\t\t\treturn;\n\t\t}\n\n\t\ttry {\n\t\t\tconst entries = readdirSync(dir, { withFileTypes: true });\n\t\t\tfor (const entry of entries) {\n\t\t\t\tlet isFile = entry.isFile();\n\t\t\t\tif (entry.isSymbolicLink()) {\n\t\t\t\t\ttry {\n\t\t\t\t\t\tisFile = statSync(join(dir, entry.name)).isFile();\n\t\t\t\t\t} catch {\n\t\t\t\t\t\tcontinue;\n\t\t\t\t\t}\n\t\t\t\t}\n\t\t\t\tif (!isFile) {\n\t\t\t\t\tcontinue;\n\t\t\t\t}\n\t\t\t\tif (!entry.name.endsWith(\".json\")) {\n\t\t\t\t\tcontinue;\n\t\t\t\t}\n\t\t\t\tthis.loadThemeFromFile(join(dir, entry.name), themes, diagnostics);\n\t\t\t}\n\t\t} catch (error) {\n\t\t\tconst message = error instanceof Error ? error.message : \"failed to read theme directory\";\n\t\t\tdiagnostics.push({ type: \"warning\", message, path: dir });\n\t\t}\n\t}\n\n\tprivate loadThemeFromFile(filePath: string, themes: Theme[], diagnostics: ResourceDiagnostic[]): void {\n\t\ttry {\n\t\t\tthemes.push(loadThemeFromPath(filePath));\n\t\t} catch (error) {\n\t\t\tconst message = error instanceof Error ? error.message : \"failed to load theme\";\n\t\t\tdiagnostics.push({ type: \"warning\", message, path: filePath });\n\t\t}\n\t}\n\n\tprivate async loadExtensionFactories(runtime: ExtensionRuntime, workflowResourceProvider: WorkflowResourceProvider): Promise<{\n\t\textensions: Extension[];\n\t\terrors: Array<{ path: string; error: string }>;\n\t}> {\n\t\tconst extensions: Extension[] = [];\n\t\tconst errors: Array<{ path: string; error: string }> = [];\n\n\t\tfor (const [index, factory] of this.extensionFactories.entries()) {\n\t\t\tconst extensionPath = `<inline:${index + 1}>`;\n\t\t\ttry {\n\t\t\t\tconst extension = await loadExtensionFromFactory(\n\t\t\t\t\tfactory,\n\t\t\t\t\tthis.cwd,\n\t\t\t\t\tthis.eventBus,\n\t\t\t\t\truntime,\n\t\t\t\t\textensionPath,\n\t\t\t\t\tworkflowResourceProvider,\n\t\t\t\t);\n\t\t\t\textensions.push(extension);\n\t\t\t} catch (error) {\n\t\t\t\tconst message = error instanceof Error ? error.message : \"failed to load extension\";\n\t\t\t\terrors.push({ path: extensionPath, error: message });\n\t\t\t}\n\t\t}\n\n\t\treturn { extensions, errors };\n\t}\n\n\tprivate dedupePrompts(prompts: PromptTemplate[]): { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] } {\n\t\tconst seen = new Map<string, PromptTemplate>();\n\t\tconst diagnostics: ResourceDiagnostic[] = [];\n\n\t\tfor (const prompt of prompts) {\n\t\t\tconst existing = seen.get(prompt.name);\n\t\t\tif (existing) {\n\t\t\t\tdiagnostics.push({\n\t\t\t\t\ttype: \"collision\",\n\t\t\t\t\tmessage: `name \"/${prompt.name}\" collision`,\n\t\t\t\t\tpath: prompt.filePath,\n\t\t\t\t\tcollision: {\n\t\t\t\t\t\tresourceType: \"prompt\",\n\t\t\t\t\t\tname: prompt.name,\n\t\t\t\t\t\twinnerPath: existing.filePath,\n\t\t\t\t\t\tloserPath: prompt.filePath,\n\t\t\t\t\t},\n\t\t\t\t});\n\t\t\t} else {\n\t\t\t\tseen.set(prompt.name, prompt);\n\t\t\t}\n\t\t}\n\n\t\treturn { prompts: Array.from(seen.values()), diagnostics };\n\t}\n\n\tprivate dedupeThemes(themes: Theme[]): { themes: Theme[]; diagnostics: ResourceDiagnostic[] } {\n\t\tconst seen = new Map<string, Theme>();\n\t\tconst diagnostics: ResourceDiagnostic[] = [];\n\n\t\tfor (const t of themes) {\n\t\t\tconst name = t.name ?? \"unnamed\";\n\t\t\tconst existing = seen.get(name);\n\t\t\tif (existing) {\n\t\t\t\tdiagnostics.push({\n\t\t\t\t\ttype: \"collision\",\n\t\t\t\t\tmessage: `name \"${name}\" collision`,\n\t\t\t\t\tpath: t.sourcePath,\n\t\t\t\t\tcollision: {\n\t\t\t\t\t\tresourceType: \"theme\",\n\t\t\t\t\t\tname,\n\t\t\t\t\t\twinnerPath: existing.sourcePath ?? \"<builtin>\",\n\t\t\t\t\t\tloserPath: t.sourcePath ?? \"<builtin>\",\n\t\t\t\t\t},\n\t\t\t\t});\n\t\t\t} else {\n\t\t\t\tseen.set(name, t);\n\t\t\t}\n\t\t}\n\n\t\treturn { themes: Array.from(seen.values()), diagnostics };\n\t}\n\n\tprivate discoverSystemPromptFile(): string | undefined {\n\t\tconst candidates = [\n\t\t\t...getProjectConfigDirs(this.cwd).map((configDir) => join(configDir, \"SYSTEM.md\")),\n\t\t\t...this.getAgentDirs().map((agentDir) => join(agentDir, \"SYSTEM.md\")),\n\t\t];\n\t\treturn candidates.find((candidate) => existsSync(candidate));\n\t}\n\n\tprivate discoverAppendSystemPromptFile(): string | undefined {\n\t\tconst candidates = [\n\t\t\t...getProjectConfigDirs(this.cwd).map((configDir) => join(configDir, \"APPEND_SYSTEM.md\")),\n\t\t\t...this.getAgentDirs().map((agentDir) => join(agentDir, \"APPEND_SYSTEM.md\")),\n\t\t];\n\t\treturn candidates.find((candidate) => existsSync(candidate));\n\t}\n\n\tprivate getAgentDirs(): string[] {\n\t\treturn this.agentDir === getAgentDir() ? getAgentDirs() : [this.agentDir];\n\t}\n\n\tprivate isUnderPath(target: string, root: string): boolean {\n\t\tconst normalizedRoot = resolve(root);\n\t\tif (target === normalizedRoot) {\n\t\t\treturn true;\n\t\t}\n\t\tconst prefix = normalizedRoot.endsWith(sep) ? normalizedRoot : `${normalizedRoot}${sep}`;\n\t\treturn target.startsWith(prefix);\n\t}\n\n\tprivate detectExtensionConflicts(extensions: Extension[]): Array<{ path: string; message: string }> {\n\t\tconst conflicts: Array<{ path: string; message: string }> = [];\n\n\t\t// Track which extension registered each tool and flag\n\t\tconst toolOwners = new Map<string, string>();\n\t\tconst flagOwners = new Map<string, string>();\n\n\t\tfor (const ext of extensions) {\n\t\t\t// Check tools\n\t\t\tfor (const toolName of ext.tools.keys()) {\n\t\t\t\tconst existingOwner = toolOwners.get(toolName);\n\t\t\t\tif (existingOwner && existingOwner !== ext.path) {\n\t\t\t\t\tconflicts.push({\n\t\t\t\t\t\tpath: ext.path,\n\t\t\t\t\t\tmessage: `Tool \"${toolName}\" conflicts with ${existingOwner}`,\n\t\t\t\t\t});\n\t\t\t\t} else {\n\t\t\t\t\ttoolOwners.set(toolName, ext.path);\n\t\t\t\t}\n\t\t\t}\n\n\t\t\t// Check flags\n\t\t\tfor (const flagName of ext.flags.keys()) {\n\t\t\t\tconst existingOwner = flagOwners.get(flagName);\n\t\t\t\tif (existingOwner && existingOwner !== ext.path) {\n\t\t\t\t\tconflicts.push({\n\t\t\t\t\t\tpath: ext.path,\n\t\t\t\t\t\tmessage: `Flag \"--${flagName}\" conflicts with ${existingOwner}`,\n\t\t\t\t\t});\n\t\t\t\t} else {\n\t\t\t\t\tflagOwners.set(flagName, ext.path);\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\n\t\treturn conflicts;\n\t}\n}\n"]}
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{ existsSync, readdirSync, readFileSync, statSync } from \"node:fs\";\nimport { join, resolve, sep } from \"node:path\";\nimport chalk from \"chalk\";\nimport { getAgentDir, getAgentDirs, getProjectConfigDirs } from \"../config.ts\";\nimport { loadThemeFromPath, type Theme } from \"../modes/interactive/theme/theme.ts\";\nimport type { ResourceDiagnostic } from \"./diagnostics.ts\";\n\nexport type { ResourceCollision, ResourceDiagnostic } from \"./diagnostics.ts\";\n\nimport { canonicalizePath, isLocalPath, resolvePath } from \"../utils/paths.ts\";\nimport { createEventBus, type EventBus } from \"./event-bus.ts\";\nimport {\n\tcreateExtensionRuntime,\n\tloadExtensionFromFactory,\n\tloadExtensions,\n\ttype WorkflowResourceProvider,\n} from \"./extensions/loader.ts\";\nimport type { Extension, ExtensionFactory, ExtensionRuntime, LoadExtensionsResult } from \"./extensions/types.ts\";\nimport { DefaultPackageManager, type PathMetadata, type ResolvedPaths, type ResolvedResource } from \"./package-manager.ts\";\nimport type { PromptTemplate } from \"./prompt-templates.ts\";\nimport { loadPromptTemplates } from \"./prompt-templates.ts\";\nimport { SettingsManager } from \"./settings-manager.ts\";\nimport type { Skill } from \"./skills.ts\";\nimport { loadSkills } from \"./skills.ts\";\nimport { createSourceInfo, type SourceInfo } from \"./source-info.ts\";\nimport { endTimingSpan, startTimingSpan } from \"./timings.ts\";\n\nexport interface ResourceExtensionPaths {\n\tskillPaths?: Array<{ path: string; metadata: PathMetadata }>;\n\tpromptPaths?: Array<{ path: string; metadata: PathMetadata }>;\n\tthemePaths?: Array<{ path: string; metadata: PathMetadata }>;\n}\n\nexport interface ResourceLoaderReloadOptions {\n\tresolveProjectTrust?: (options: { extensionsResult: LoadExtensionsResult }) => boolean | Promise<boolean>;\n}\n\nexport interface ResourceLoader {\n\tgetExtensions(): LoadExtensionsResult;\n\tgetSkills(): { skills: Skill[]; diagnostics: ResourceDiagnostic[] };\n\tgetPrompts(): { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] };\n\tgetThemes(): { themes: Theme[]; diagnostics: ResourceDiagnostic[] };\n\tgetAgentsFiles(): { agentsFiles: Array<{ path: string; content: string }> };\n\tgetSystemPrompt(): string | undefined;\n\tgetAppendSystemPrompt(): string[];\n\textendResources(paths: ResourceExtensionPaths): void;\n\treload(options?: ResourceLoaderReloadOptions): Promise<void>;\n}\n\nfunction resolvePromptInput(input: string | undefined, description: string): string | undefined {\n\tif (!input) {\n\t\treturn undefined;\n\t}\n\n\tif (existsSync(input)) {\n\t\ttry {\n\t\t\treturn readFileSync(input, \"utf-8\");\n\t\t} catch (error) {\n\t\t\tconsole.error(chalk.yellow(`Warning: Could not read ${description} file ${input}: ${error}`));\n\t\t\treturn input;\n\t\t}\n\t}\n\n\treturn input;\n}\n\nfunction loadContextFileFromDir(dir: string): { path: string; content: string } | null {\n\tconst candidates = [\"AGENTS.md\", \"AGENTS.MD\", \"CLAUDE.md\", \"CLAUDE.MD\"];\n\tfor (const filename of candidates) {\n\t\tconst filePath = join(dir, filename);\n\t\tif (existsSync(filePath)) {\n\t\t\ttry {\n\t\t\t\treturn {\n\t\t\t\t\tpath: filePath,\n\t\t\t\t\tcontent: readFileSync(filePath, \"utf-8\"),\n\t\t\t\t};\n\t\t\t} catch (error) {\n\t\t\t\tconsole.error(chalk.yellow(`Warning: Could not read ${filePath}: ${error}`));\n\t\t\t}\n\t\t}\n\t}\n\treturn null;\n}\n\nexport function loadProjectContextFiles(options: {\n\tcwd: string;\n\tagentDir: string;\n\tprojectTrusted?: boolean;\n}): Array<{ path: string; content: string }> {\n\tconst resolvedCwd = resolvePath(options.cwd);\n\tconst resolvedAgentDir = resolvePath(options.agentDir);\n\n\tconst contextFiles: Array<{ path: string; content: string }> = [];\n\tconst seenPaths = new Set<string>();\n\n\tconst contextAgentDirs = Array.from(\n\t\tnew Set(resolvedAgentDir === getAgentDir() ? getAgentDirs() : [resolvedAgentDir]),\n\t).reverse();\n\tfor (const agentDir of contextAgentDirs) {\n\t\tconst context = loadContextFileFromDir(agentDir);\n\t\tif (context && !seenPaths.has(context.path)) {\n\t\t\tcontextFiles.push(context);\n\t\t\tseenPaths.add(context.path);\n\t\t}\n\t}\n\n\tconst ancestorContextFiles: Array<{ path: string; content: string }> = [];\n\tif (options.projectTrusted === false) {\n\t\treturn contextFiles;\n\t}\n\n\tlet currentDir = resolvedCwd;\n\tconst root = resolve(\"/\");\n\n\twhile (true) {\n\t\tconst contextFile = loadContextFileFromDir(currentDir);\n\t\tif (contextFile && !seenPaths.has(contextFile.path)) {\n\t\t\tancestorContextFiles.unshift(contextFile);\n\t\t\tseenPaths.add(contextFile.path);\n\t\t}\n\n\t\tif (currentDir === root) break;\n\n\t\tconst parentDir = resolve(currentDir, \"..\");\n\t\tif (parentDir === currentDir) break;\n\t\tcurrentDir = parentDir;\n\t}\n\n\tcontextFiles.push(...ancestorContextFiles);\n\n\treturn contextFiles;\n}\n\nexport interface DefaultResourceLoaderOptions {\n\tcwd: string;\n\tagentDir: string;\n\tsettingsManager?: SettingsManager;\n\teventBus?: EventBus;\n\tadditionalExtensionPaths?: string[];\n\tadditionalSkillPaths?: string[];\n\tadditionalPromptTemplatePaths?: string[];\n\tadditionalThemePaths?: string[];\n\tbuiltinPackagePaths?: string[];\n\textensionFactories?: ExtensionFactory[];\n\tnoExtensions?: boolean;\n\tnoSkills?: boolean;\n\tnoPromptTemplates?: boolean;\n\tnoThemes?: boolean;\n\tnoContextFiles?: boolean;\n\tsystemPrompt?: string;\n\tappendSystemPrompt?: string[];\n\textensionsOverride?: (base: LoadExtensionsResult) => LoadExtensionsResult;\n\tskillsOverride?: (base: { skills: Skill[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tskills: Skill[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tpromptsOverride?: (base: { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tprompts: PromptTemplate[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tthemesOverride?: (base: { themes: Theme[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tthemes: Theme[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tagentsFilesOverride?: (base: { agentsFiles: Array<{ path: string; content: string }> }) => {\n\t\tagentsFiles: Array<{ path: string; content: string }>;\n\t};\n\tsystemPromptOverride?: (base: string | undefined) => string | undefined;\n\tappendSystemPromptOverride?: (base: string[]) => string[];\n}\n\nexport class DefaultResourceLoader implements ResourceLoader {\n\tprivate cwd: string;\n\tprivate agentDir: string;\n\tprivate settingsManager: SettingsManager;\n\tprivate eventBus: EventBus;\n\tprivate packageManager: DefaultPackageManager;\n\tprivate additionalExtensionPaths: string[];\n\tprivate additionalSkillPaths: string[];\n\tprivate additionalPromptTemplatePaths: string[];\n\tprivate additionalThemePaths: string[];\n\tprivate builtinPackagePaths: string[];\n\tprivate extensionFactories: ExtensionFactory[];\n\tprivate noExtensions: boolean;\n\tprivate noSkills: boolean;\n\tprivate noPromptTemplates: boolean;\n\tprivate noThemes: boolean;\n\tprivate noContextFiles: boolean;\n\tprivate systemPromptSource?: string;\n\tprivate appendSystemPromptSource?: string[];\n\tprivate extensionsOverride?: (base: LoadExtensionsResult) => LoadExtensionsResult;\n\tprivate skillsOverride?: (base: { skills: Skill[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tskills: Skill[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tprivate promptsOverride?: (base: { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tprompts: PromptTemplate[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tprivate themesOverride?: (base: { themes: Theme[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tthemes: Theme[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tprivate agentsFilesOverride?: (base: { agentsFiles: Array<{ path: string; content: string }> }) => {\n\t\tagentsFiles: Array<{ path: string; content: string }>;\n\t};\n\tprivate systemPromptOverride?: (base: string | undefined) => string | undefined;\n\tprivate appendSystemPromptOverride?: (base: string[]) => string[];\n\n\tprivate extensionsResult: LoadExtensionsResult;\n\tprivate skills: Skill[];\n\tprivate skillDiagnostics: ResourceDiagnostic[];\n\tprivate prompts: PromptTemplate[];\n\tprivate promptDiagnostics: ResourceDiagnostic[];\n\tprivate themes: Theme[];\n\tprivate themeDiagnostics: ResourceDiagnostic[];\n\tprivate agentsFiles: Array<{ path: string; content: string }>;\n\tprivate systemPrompt?: string;\n\tprivate appendSystemPrompt: string[];\n\tprivate workflowResources: ResolvedResource[];\n\tprivate lastSkillPaths: string[];\n\tprivate extensionSkillSourceInfos: Map<string, SourceInfo>;\n\tprivate extensionPromptSourceInfos: Map<string, SourceInfo>;\n\tprivate extensionThemeSourceInfos: Map<string, SourceInfo>;\n\tprivate lastPromptPaths: string[];\n\tprivate lastThemePaths: string[];\n\n\tconstructor(options: DefaultResourceLoaderOptions) {\n\t\tthis.cwd = resolvePath(options.cwd);\n\t\tthis.agentDir = resolvePath(options.agentDir);\n\t\tthis.settingsManager = options.settingsManager ?? SettingsManager.create(this.cwd, this.agentDir);\n\t\tthis.eventBus = options.eventBus ?? createEventBus();\n\t\tthis.packageManager = new DefaultPackageManager({\n\t\t\tcwd: this.cwd,\n\t\t\tagentDir: this.agentDir,\n\t\t\tsettingsManager: this.settingsManager,\n\t\t});\n\t\tthis.additionalExtensionPaths = options.additionalExtensionPaths ?? [];\n\t\tthis.additionalSkillPaths = options.additionalSkillPaths ?? [];\n\t\tthis.additionalPromptTemplatePaths = options.additionalPromptTemplatePaths ?? [];\n\t\tthis.additionalThemePaths = options.additionalThemePaths ?? [];\n\t\tthis.builtinPackagePaths = options.builtinPackagePaths ?? [];\n\t\tthis.extensionFactories = options.extensionFactories ?? [];\n\t\tthis.noExtensions = options.noExtensions ?? false;\n\t\tthis.noSkills = options.noSkills ?? false;\n\t\tthis.noPromptTemplates = options.noPromptTemplates ?? false;\n\t\tthis.noThemes = options.noThemes ?? false;\n\t\tthis.noContextFiles = options.noContextFiles ?? false;\n\t\tthis.systemPromptSource = options.systemPrompt;\n\t\tthis.appendSystemPromptSource = options.appendSystemPrompt;\n\t\tthis.extensionsOverride = options.extensionsOverride;\n\t\tthis.skillsOverride = options.skillsOverride;\n\t\tthis.promptsOverride = options.promptsOverride;\n\t\tthis.themesOverride = options.themesOverride;\n\t\tthis.agentsFilesOverride = options.agentsFilesOverride;\n\t\tthis.systemPromptOverride = options.systemPromptOverride;\n\t\tthis.appendSystemPromptOverride = options.appendSystemPromptOverride;\n\n\t\tthis.extensionsResult = { extensions: [], errors: [], runtime: createExtensionRuntime() };\n\t\tthis.skills = [];\n\t\tthis.skillDiagnostics = [];\n\t\tthis.prompts = [];\n\t\tthis.promptDiagnostics = [];\n\t\tthis.themes = [];\n\t\tthis.themeDiagnostics = [];\n\t\tthis.agentsFiles = [];\n\t\tthis.appendSystemPrompt = [];\n\t\tthis.workflowResources = [];\n\t\tthis.lastSkillPaths = [];\n\t\tthis.extensionSkillSourceInfos = new Map();\n\t\tthis.extensionPromptSourceInfos = new Map();\n\t\tthis.extensionThemeSourceInfos = new Map();\n\t\tthis.lastPromptPaths = [];\n\t\tthis.lastThemePaths = [];\n\t}\n\n\tgetExtensions(): LoadExtensionsResult {\n\t\treturn this.extensionsResult;\n\t}\n\n\tgetSkills(): { skills: Skill[]; diagnostics: ResourceDiagnostic[] } {\n\t\treturn { skills: this.skills, diagnostics: this.skillDiagnostics };\n\t}\n\n\tgetPrompts(): { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] } {\n\t\treturn { prompts: this.prompts, diagnostics: this.promptDiagnostics };\n\t}\n\n\tgetThemes(): { themes: Theme[]; diagnostics: ResourceDiagnostic[] } {\n\t\treturn { themes: this.themes, diagnostics: this.themeDiagnostics };\n\t}\n\n\tgetAgentsFiles(): { agentsFiles: Array<{ path: string; content: string }> } {\n\t\treturn { agentsFiles: this.agentsFiles };\n\t}\n\n\tgetSystemPrompt(): string | undefined {\n\t\treturn this.systemPrompt;\n\t}\n\n\tgetAppendSystemPrompt(): string[] {\n\t\treturn this.appendSystemPrompt;\n\t}\n\n\tgetWorkflowResources(): ResolvedResource[] {\n\t\treturn [...this.workflowResources];\n\t}\n\n\tasync refreshWorkflowResources(): Promise<ResolvedResource[]> {\n\t\tconst { resolvedPaths, cliExtensionPaths, builtinPackagePaths } = await this.resolvePackageResourcePaths();\n\t\tconst workflowResources = this.collectWorkflowResources(\n\t\t\tresolvedPaths,\n\t\t\tcliExtensionPaths,\n\t\t\tbuiltinPackagePaths,\n\t\t);\n\t\tthis.workflowResources = workflowResources;\n\t\treturn [...this.workflowResources];\n\t}\n\n\textendResources(paths: ResourceExtensionPaths): void {\n\t\tconst skillPaths = this.normalizeExtensionPaths(paths.skillPaths ?? []);\n\t\tconst promptPaths = this.normalizeExtensionPaths(paths.promptPaths ?? []);\n\t\tconst themePaths = this.normalizeExtensionPaths(paths.themePaths ?? []);\n\n\t\tfor (const entry of skillPaths) {\n\t\t\tthis.extensionSkillSourceInfos.set(entry.path, createSourceInfo(entry.path, entry.metadata));\n\t\t}\n\t\tfor (const entry of promptPaths) {\n\t\t\tthis.extensionPromptSourceInfos.set(entry.path, createSourceInfo(entry.path, entry.metadata));\n\t\t}\n\t\tfor (const entry of themePaths) {\n\t\t\tthis.extensionThemeSourceInfos.set(entry.path, createSourceInfo(entry.path, entry.metadata));\n\t\t}\n\n\t\tif (skillPaths.length > 0) {\n\t\t\tthis.lastSkillPaths = this.mergePaths(\n\t\t\t\tthis.lastSkillPaths,\n\t\t\t\tskillPaths.map((entry) => entry.path),\n\t\t\t);\n\t\t\tthis.updateSkillsFromPaths(this.lastSkillPaths);\n\t\t}\n\n\t\tif (promptPaths.length > 0) {\n\t\t\tthis.lastPromptPaths = this.mergePaths(\n\t\t\t\tthis.lastPromptPaths,\n\t\t\t\tpromptPaths.map((entry) => entry.path),\n\t\t\t);\n\t\t\tthis.updatePromptsFromPaths(this.lastPromptPaths);\n\t\t}\n\n\t\tif (themePaths.length > 0) {\n\t\t\tthis.lastThemePaths = this.mergePaths(\n\t\t\t\tthis.lastThemePaths,\n\t\t\t\tthemePaths.map((entry) => entry.path),\n\t\t\t);\n\t\t\tthis.updateThemesFromPaths(this.lastThemePaths);\n\t\t}\n\t}\n\n\tasync loadProjectTrustExtensions(): Promise<LoadExtensionsResult> {\n\t\tthis.settingsManager.setProjectTrusted(false);\n\t\tawait this.settingsManager.reload();\n\t\tconst { resolvedPaths, cliExtensionPaths, builtinPackagePaths } = await this.resolvePackageResourcePaths();\n\t\tconst metadataByPath = new Map<string, PathMetadata>();\n\t\tconst getEnabledResources = (\n\t\t\tresources: Array<{ path: string; enabled: boolean; metadata: PathMetadata }>,\n\t\t): Array<{ path: string; enabled: boolean; metadata: PathMetadata }> => {\n\t\t\tfor (const r of resources) {\n\t\t\t\tif (!metadataByPath.has(r.path)) {\n\t\t\t\t\tmetadataByPath.set(r.path, r.metadata);\n\t\t\t\t}\n\t\t\t}\n\t\t\treturn resources.filter((r) => r.enabled);\n\t\t};\n\t\tconst getEnabledPaths = (\n\t\t\tresources: Array<{ path: string; enabled: boolean; metadata: PathMetadata }>,\n\t\t): string[] => getEnabledResources(resources).map((r) => r.path);\n\n\t\tconst cliEnabledExtensions = getEnabledPaths(cliExtensionPaths.extensions);\n\t\tconst enabledExtensions = getEnabledPaths(resolvedPaths.extensions);\n\t\tconst builtinEnabledExtensions = this.noExtensions ? [] : getEnabledPaths(builtinPackagePaths.extensions);\n\t\tconst workflowResources = this.collectWorkflowResources(resolvedPaths, cliExtensionPaths, builtinPackagePaths);\n\t\tthis.workflowResources = workflowResources;\n\t\tconst workflowResourceProvider = this.createWorkflowResourceProvider();\n\t\tconst extensionPaths = this.noExtensions\n\t\t\t? cliEnabledExtensions\n\t\t\t: this.mergePaths(cliEnabledExtensions, [...enabledExtensions, ...builtinEnabledExtensions]);\n\t\tconst extensionsResult = await loadExtensions(extensionPaths, this.cwd, this.eventBus, workflowResourceProvider);\n\t\tconst inlineExtensions = await this.loadExtensionFactories(extensionsResult.runtime, workflowResourceProvider);\n\t\textensionsResult.extensions.push(...inlineExtensions.extensions);\n\t\textensionsResult.errors.push(...inlineExtensions.errors);\n\t\tthis.applyExtensionSourceInfo(extensionsResult.extensions, metadataByPath);\n\t\treturn extensionsResult;\n\t}\n\n\tasync reload(options?: ResourceLoaderReloadOptions): Promise<void> {\n\t\tlet preTrustExtensions: LoadExtensionsResult | undefined;\n\t\tif (options?.resolveProjectTrust) {\n\t\t\tpreTrustExtensions = await this.loadProjectTrustExtensions();\n\t\t\tconst projectTrusted = await options.resolveProjectTrust({ extensionsResult: preTrustExtensions });\n\t\t\tthis.settingsManager.setProjectTrusted(projectTrusted);\n\t\t}\n\t\tconst resolveSpan = startTimingSpan(\"DefaultResourceLoader.reload.resolvePackageResourcePaths\");\n\t\tconst { resolvedPaths, cliExtensionPaths, builtinPackagePaths } = await this.resolvePackageResourcePaths();\n\t\tendTimingSpan(resolveSpan);\n\t\tconst metadataByPath = new Map<string, PathMetadata>();\n\n\t\tthis.extensionSkillSourceInfos = new Map();\n\t\tthis.extensionPromptSourceInfos = new Map();\n\t\tthis.extensionThemeSourceInfos = new Map();\n\n\t\t// Helper to extract enabled paths and store metadata\n\t\tconst getEnabledResources = (\n\t\t\tresources: Array<{ path: string; enabled: boolean; metadata: PathMetadata }>,\n\t\t): Array<{ path: string; enabled: boolean; metadata: PathMetadata }> => {\n\t\t\tfor (const r of resources) {\n\t\t\t\tif (!metadataByPath.has(r.path)) {\n\t\t\t\t\tmetadataByPath.set(r.path, r.metadata);\n\t\t\t\t}\n\t\t\t}\n\t\t\treturn resources.filter((r) => r.enabled);\n\t\t};\n\n\t\tconst getEnabledPaths = (\n\t\t\tresources: Array<{ path: string; enabled: boolean; metadata: PathMetadata }>,\n\t\t): string[] => getEnabledResources(resources).map((r) => r.path);\n\t\tconst enabledExtensions = getEnabledPaths(resolvedPaths.extensions);\n\t\tconst enabledSkillResources = getEnabledResources(resolvedPaths.skills);\n\t\tconst enabledPrompts = getEnabledPaths(resolvedPaths.prompts);\n\t\tconst enabledThemes = getEnabledPaths(resolvedPaths.themes);\n\n\t\tconst builtinEnabledExtensions = this.noExtensions\n\t\t\t? []\n\t\t\t: getEnabledPaths(builtinPackagePaths.extensions);\n\t\tconst builtinEnabledSkillResources = this.noSkills ? [] : getEnabledResources(builtinPackagePaths.skills);\n\t\tconst builtinEnabledPrompts = this.noPromptTemplates ? [] : getEnabledPaths(builtinPackagePaths.prompts);\n\t\tconst builtinEnabledThemes = this.noThemes ? [] : getEnabledPaths(builtinPackagePaths.themes);\n\n\t\tconst mapSkillPath = (resource: { path: string; metadata: PathMetadata }): string => {\n\t\t\tif (resource.metadata.source !== \"auto\" && resource.metadata.origin !== \"package\") {\n\t\t\t\treturn resource.path;\n\t\t\t}\n\t\t\ttry {\n\t\t\t\tconst stats = statSync(resource.path);\n\t\t\t\tif (!stats.isDirectory()) {\n\t\t\t\t\treturn resource.path;\n\t\t\t\t}\n\t\t\t} catch {\n\t\t\t\treturn resource.path;\n\t\t\t}\n\t\t\tconst skillFile = join(resource.path, \"SKILL.md\");\n\t\t\tif (existsSync(skillFile)) {\n\t\t\t\tif (!metadataByPath.has(skillFile)) {\n\t\t\t\t\tmetadataByPath.set(skillFile, resource.metadata);\n\t\t\t\t}\n\t\t\t\treturn skillFile;\n\t\t\t}\n\t\t\treturn resource.path;\n\t\t};\n\n\t\tconst enabledSkills = enabledSkillResources.map(mapSkillPath);\n\t\tconst builtinEnabledSkills = builtinEnabledSkillResources.map(mapSkillPath);\n\n\t\t// Add CLI paths metadata\n\t\tfor (const r of cliExtensionPaths.extensions) {\n\t\t\tif (!metadataByPath.has(r.path)) {\n\t\t\t\tmetadataByPath.set(r.path, { source: \"cli\", scope: \"temporary\", origin: \"top-level\" });\n\t\t\t}\n\t\t}\n\t\tfor (const r of cliExtensionPaths.skills) {\n\t\t\tif (!metadataByPath.has(r.path)) {\n\t\t\t\tmetadataByPath.set(r.path, { source: \"cli\", scope: \"temporary\", origin: \"top-level\" });\n\t\t\t}\n\t\t}\n\n\t\tconst cliEnabledExtensions = getEnabledPaths(cliExtensionPaths.extensions);\n\t\tconst cliEnabledSkills = getEnabledPaths(cliExtensionPaths.skills);\n\t\tconst cliEnabledPrompts = getEnabledPaths(cliExtensionPaths.prompts);\n\t\tconst cliEnabledThemes = getEnabledPaths(cliExtensionPaths.themes);\n\t\tconst workflowResources = this.collectWorkflowResources(\n\t\t\tresolvedPaths,\n\t\t\tcliExtensionPaths,\n\t\t\tbuiltinPackagePaths,\n\t\t);\n\t\tthis.workflowResources = workflowResources;\n\t\tconst workflowResourceProvider = this.createWorkflowResourceProvider();\n\n\t\tconst extensionPaths = this.noExtensions\n\t\t\t? cliEnabledExtensions\n\t\t\t: this.mergePaths(cliEnabledExtensions, [...enabledExtensions, ...builtinEnabledExtensions]);\n\n\t\tconst extensionsResult = await this.loadFinalExtensionSet(\n\t\t\textensionPaths,\n\t\t\tpreTrustExtensions,\n\t\t\tworkflowResourceProvider,\n\t\t);\n\n\t\tfor (const p of this.additionalExtensionPaths) {\n\t\t\tif (isLocalPath(p)) {\n\t\t\t\tconst resolved = this.resolveResourcePath(p);\n\t\t\t\tif (!existsSync(resolved)) {\n\t\t\t\t\textensionsResult.errors.push({ path: resolved, error: `Extension path does not exist: ${resolved}` });\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\t\tthis.extensionsResult = this.extensionsOverride ? this.extensionsOverride(extensionsResult) : extensionsResult;\n\t\tthis.applyExtensionSourceInfo(this.extensionsResult.extensions, metadataByPath);\n\n\t\tconst skillPaths = this.noSkills\n\t\t\t? this.mergePaths(cliEnabledSkills, this.additionalSkillPaths)\n\t\t\t: this.mergePaths(\n\t\t\t\t\t[...cliEnabledSkills, ...enabledSkills, ...builtinEnabledSkills],\n\t\t\t\t\tthis.additionalSkillPaths,\n\t\t\t\t);\n\n\t\tthis.lastSkillPaths = skillPaths;\n\t\tconst skillsSpan = startTimingSpan(\"DefaultResourceLoader.reload.updateSkillsFromPaths\");\n\t\tthis.updateSkillsFromPaths(skillPaths, metadataByPath);\n\t\tendTimingSpan(skillsSpan);\n\t\tfor (const p of this.additionalSkillPaths) {\n\t\t\tif (isLocalPath(p)) {\n\t\t\t\tconst resolved = this.resolveResourcePath(p);\n\t\t\t\tif (!existsSync(resolved) && !this.skillDiagnostics.some((d) => d.path === resolved)) {\n\t\t\t\t\tthis.skillDiagnostics.push({ type: \"error\", message: \"Skill path does not exist\", path: resolved });\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\n\t\tconst promptPaths = this.noPromptTemplates\n\t\t\t? this.mergePaths(cliEnabledPrompts, this.additionalPromptTemplatePaths)\n\t\t\t: this.mergePaths(\n\t\t\t\t\t[...cliEnabledPrompts, ...enabledPrompts, ...builtinEnabledPrompts],\n\t\t\t\t\tthis.additionalPromptTemplatePaths,\n\t\t\t\t);\n\n\t\tthis.lastPromptPaths = promptPaths;\n\t\tconst promptsSpan = startTimingSpan(\"DefaultResourceLoader.reload.updatePromptsFromPaths\");\n\t\tthis.updatePromptsFromPaths(promptPaths, metadataByPath);\n\t\tendTimingSpan(promptsSpan);\n\t\tfor (const p of this.additionalPromptTemplatePaths) {\n\t\t\tif (isLocalPath(p)) {\n\t\t\t\tconst resolved = this.resolveResourcePath(p);\n\t\t\t\tif (!existsSync(resolved) && !this.promptDiagnostics.some((d) => d.path === resolved)) {\n\t\t\t\t\tthis.promptDiagnostics.push({\n\t\t\t\t\t\ttype: \"error\",\n\t\t\t\t\t\tmessage: \"Prompt template path does not exist\",\n\t\t\t\t\t\tpath: resolved,\n\t\t\t\t\t});\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\n\t\tconst themePaths = this.noThemes\n\t\t\t? this.mergePaths(cliEnabledThemes, this.additionalThemePaths)\n\t\t\t: this.mergePaths(\n\t\t\t\t\t[...cliEnabledThemes, ...enabledThemes, ...builtinEnabledThemes],\n\t\t\t\t\tthis.additionalThemePaths,\n\t\t\t\t);\n\n\t\tthis.lastThemePaths = themePaths;\n\t\tconst themesSpan = startTimingSpan(\"DefaultResourceLoader.reload.updateThemesFromPaths\");\n\t\tthis.updateThemesFromPaths(themePaths, metadataByPath);\n\t\tendTimingSpan(themesSpan);\n\t\tfor (const p of this.additionalThemePaths) {\n\t\t\tconst resolved = this.resolveResourcePath(p);\n\t\t\tif (!existsSync(resolved) && !this.themeDiagnostics.some((d) => d.path === resolved)) {\n\t\t\t\tthis.themeDiagnostics.push({ type: \"error\", message: \"Theme path does not exist\", path: resolved });\n\t\t\t}\n\t\t}\n\n\t\tconst contextFilesSpan = startTimingSpan(\"DefaultResourceLoader.reload.loadProjectContextFiles\");\n\t\tconst agentsFiles = {\n\t\t\tagentsFiles: this.noContextFiles\n\t\t\t\t? []\n\t\t\t\t: loadProjectContextFiles({\n\t\t\t\t\t\tcwd: this.cwd,\n\t\t\t\t\t\tagentDir: this.agentDir,\n\t\t\t\t\t\tprojectTrusted: this.settingsManager.isProjectTrusted(),\n\t\t\t\t\t}),\n\t\t};\n\t\tendTimingSpan(contextFilesSpan);\n\t\tconst resolvedAgentsFiles = this.agentsFilesOverride ? this.agentsFilesOverride(agentsFiles) : agentsFiles;\n\t\tthis.agentsFiles = resolvedAgentsFiles.agentsFiles;\n\n\t\tconst promptFilesSpan = startTimingSpan(\"DefaultResourceLoader.reload.resolvePromptFiles\");\n\t\tconst baseSystemPrompt = resolvePromptInput(\n\t\t\tthis.systemPromptSource ?? this.discoverSystemPromptFile(),\n\t\t\t\"system prompt\",\n\t\t);\n\t\tthis.systemPrompt = this.systemPromptOverride ? this.systemPromptOverride(baseSystemPrompt) : baseSystemPrompt;\n\n\t\tconst appendSources =\n\t\t\tthis.appendSystemPromptSource ??\n\t\t\t(this.discoverAppendSystemPromptFile() ? [this.discoverAppendSystemPromptFile()!] : []);\n\t\tconst baseAppend = appendSources\n\t\t\t.map((s) => resolvePromptInput(s, \"append system prompt\"))\n\t\t\t.filter((s): s is string => s !== undefined);\n\t\tthis.appendSystemPrompt = this.appendSystemPromptOverride\n\t\t\t? this.appendSystemPromptOverride(baseAppend)\n\t\t\t: baseAppend;\n\t\tendTimingSpan(promptFilesSpan);\n\t}\n\n\tprivate emptyResolvedPaths(): ResolvedPaths {\n\t\treturn { extensions: [], skills: [], prompts: [], themes: [], workflows: [] };\n\t}\n\n\tprivate async resolvePackageResourcePaths(): Promise<{\n\t\tresolvedPaths: ResolvedPaths;\n\t\tcliExtensionPaths: ResolvedPaths;\n\t\tbuiltinPackagePaths: ResolvedPaths;\n\t}> {\n\t\tawait this.settingsManager.reload();\n\t\tconst resolvedPaths = await this.packageManager.resolve();\n\t\tconst cliExtensionPaths = await this.packageManager.resolveExtensionSources(this.additionalExtensionPaths, {\n\t\t\ttemporary: true,\n\t\t});\n\t\tconst builtinPackagePaths =\n\t\t\tthis.builtinPackagePaths.length > 0\n\t\t\t\t? await this.packageManager.resolveExtensionSources(this.builtinPackagePaths, { temporary: true })\n\t\t\t\t: this.emptyResolvedPaths();\n\t\treturn { resolvedPaths, cliExtensionPaths, builtinPackagePaths };\n\t}\n\n\tprivate enabledPackageWorkflowResources(resources: ResolvedResource[]): ResolvedResource[] {\n\t\treturn resources.filter((resource) => resource.enabled && resource.metadata.origin === \"package\");\n\t}\n\n\tprivate collectWorkflowResources(\n\t\tresolvedPaths: ResolvedPaths,\n\t\tcliExtensionPaths: ResolvedPaths,\n\t\tbuiltinPackagePaths: ResolvedPaths,\n\t): ResolvedResource[] {\n\t\treturn [\n\t\t\t...this.enabledPackageWorkflowResources(cliExtensionPaths.workflows),\n\t\t\t...this.enabledPackageWorkflowResources(resolvedPaths.workflows),\n\t\t\t...this.enabledPackageWorkflowResources(builtinPackagePaths.workflows),\n\t\t];\n\t}\n\n\tprivate createWorkflowResourceProvider(): WorkflowResourceProvider {\n\t\treturn {\n\t\t\tget: () => this.workflowResources,\n\t\t\trefresh: () => this.refreshWorkflowResources(),\n\t\t};\n\t}\n\n\tprivate normalizeExtensionPaths(\n\t\tentries: Array<{ path: string; metadata: PathMetadata }>,\n\t): Array<{ path: string; metadata: PathMetadata }> {\n\t\treturn entries.map((entry) => {\n\t\t\tconst metadata = entry.metadata.baseDir\n\t\t\t\t? { ...entry.metadata, baseDir: this.resolveResourcePath(entry.metadata.baseDir) }\n\t\t\t\t: entry.metadata;\n\t\t\treturn {\n\t\t\t\tpath: this.resolveResourcePath(entry.path),\n\t\t\t\tmetadata,\n\t\t\t};\n\t\t});\n\t}\n\n\tprivate updateSkillsFromPaths(skillPaths: string[], metadataByPath?: Map<string, PathMetadata>): void {\n\t\tlet skillsResult: { skills: Skill[]; diagnostics: ResourceDiagnostic[] };\n\t\tif (this.noSkills && skillPaths.length === 0) {\n\t\t\tskillsResult = { skills: [], diagnostics: [] };\n\t\t} else {\n\t\t\tskillsResult = loadSkills({\n\t\t\t\tcwd: this.cwd,\n\t\t\t\tagentDir: this.agentDir,\n\t\t\t\tskillPaths,\n\t\t\t\tincludeDefaults: false,\n\t\t\t});\n\t\t}\n\t\tconst resolvedSkills = this.skillsOverride ? this.skillsOverride(skillsResult) : skillsResult;\n\t\tthis.skills = resolvedSkills.skills.map((skill) => ({\n\t\t\t...skill,\n\t\t\tsourceInfo:\n\t\t\t\tthis.findSourceInfoForPath(skill.filePath, this.extensionSkillSourceInfos, metadataByPath) ??\n\t\t\t\tskill.sourceInfo ??\n\t\t\t\tthis.getDefaultSourceInfoForPath(skill.filePath),\n\t\t}));\n\t\tthis.skillDiagnostics = resolvedSkills.diagnostics;\n\t}\n\n\tprivate updatePromptsFromPaths(promptPaths: string[], metadataByPath?: Map<string, PathMetadata>): void {\n\t\tlet promptsResult: { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] };\n\t\tif (this.noPromptTemplates && promptPaths.length === 0) {\n\t\t\tpromptsResult = { prompts: [], diagnostics: [] };\n\t\t} else {\n\t\t\tconst allPrompts = loadPromptTemplates({\n\t\t\t\tcwd: this.cwd,\n\t\t\t\tagentDir: this.agentDir,\n\t\t\t\tpromptPaths,\n\t\t\t\tincludeDefaults: false,\n\t\t\t});\n\t\t\tpromptsResult = this.dedupePrompts(allPrompts);\n\t\t}\n\t\tconst resolvedPrompts = this.promptsOverride ? this.promptsOverride(promptsResult) : promptsResult;\n\t\tthis.prompts = resolvedPrompts.prompts.map((prompt) => ({\n\t\t\t...prompt,\n\t\t\tsourceInfo:\n\t\t\t\tthis.findSourceInfoForPath(prompt.filePath, this.extensionPromptSourceInfos, metadataByPath) ??\n\t\t\t\tprompt.sourceInfo ??\n\t\t\t\tthis.getDefaultSourceInfoForPath(prompt.filePath),\n\t\t}));\n\t\tthis.promptDiagnostics = resolvedPrompts.diagnostics;\n\t}\n\n\tprivate updateThemesFromPaths(themePaths: string[], metadataByPath?: Map<string, PathMetadata>): void {\n\t\tlet themesResult: { themes: Theme[]; diagnostics: ResourceDiagnostic[] };\n\t\tif (this.noThemes && themePaths.length === 0) {\n\t\t\tthemesResult = { themes: [], diagnostics: [] };\n\t\t} else {\n\t\t\tconst loaded = this.loadThemes(themePaths, false);\n\t\t\tconst deduped = this.dedupeThemes(loaded.themes);\n\t\t\tthemesResult = { themes: deduped.themes, diagnostics: [...loaded.diagnostics, ...deduped.diagnostics] };\n\t\t}\n\t\tconst resolvedThemes = this.themesOverride ? this.themesOverride(themesResult) : themesResult;\n\t\tthis.themes = resolvedThemes.themes.map((theme) => {\n\t\t\tconst sourcePath = theme.sourcePath;\n\t\t\ttheme.sourceInfo = sourcePath\n\t\t\t\t? (this.findSourceInfoForPath(sourcePath, this.extensionThemeSourceInfos, metadataByPath) ??\n\t\t\t\t\ttheme.sourceInfo ??\n\t\t\t\t\tthis.getDefaultSourceInfoForPath(sourcePath))\n\t\t\t\t: theme.sourceInfo;\n\t\t\treturn theme;\n\t\t});\n\t\tthis.themeDiagnostics = resolvedThemes.diagnostics;\n\t}\n\n\tprivate applyExtensionSourceInfo(extensions: Extension[], metadataByPath: Map<string, PathMetadata>): void {\n\t\tfor (const extension of extensions) {\n\t\t\textension.sourceInfo =\n\t\t\t\tthis.findSourceInfoForPath(extension.path, undefined, metadataByPath) ??\n\t\t\t\tthis.getDefaultSourceInfoForPath(extension.path);\n\t\t\tfor (const command of extension.commands.values()) {\n\t\t\t\tcommand.sourceInfo = extension.sourceInfo;\n\t\t\t}\n\t\t\tfor (const tool of extension.tools.values()) {\n\t\t\t\ttool.sourceInfo = extension.sourceInfo;\n\t\t\t}\n\t\t}\n\t}\n\n\tprivate findSourceInfoForPath(\n\t\tresourcePath: string,\n\t\textraSourceInfos?: Map<string, SourceInfo>,\n\t\tmetadataByPath?: Map<string, PathMetadata>,\n\t): SourceInfo | undefined {\n\t\tif (!resourcePath) {\n\t\t\treturn undefined;\n\t\t}\n\n\t\tif (resourcePath.startsWith(\"<\")) {\n\t\t\treturn this.getDefaultSourceInfoForPath(resourcePath);\n\t\t}\n\n\t\tconst normalizedResourcePath = resolve(resourcePath);\n\t\tif (extraSourceInfos) {\n\t\t\tfor (const [sourcePath, sourceInfo] of extraSourceInfos.entries()) {\n\t\t\t\tconst normalizedSourcePath = resolve(sourcePath);\n\t\t\t\tif (\n\t\t\t\t\tnormalizedResourcePath === normalizedSourcePath ||\n\t\t\t\t\tnormalizedResourcePath.startsWith(`${normalizedSourcePath}${sep}`)\n\t\t\t\t) {\n\t\t\t\t\treturn { ...sourceInfo, path: resourcePath };\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\n\t\tif (metadataByPath) {\n\t\t\tconst exact = metadataByPath.get(normalizedResourcePath) ?? metadataByPath.get(resourcePath);\n\t\t\tif (exact) {\n\t\t\t\treturn createSourceInfo(resourcePath, exact);\n\t\t\t}\n\n\t\t\tfor (const [sourcePath, metadata] of metadataByPath.entries()) {\n\t\t\t\tconst normalizedSourcePath = resolve(sourcePath);\n\t\t\t\tif (\n\t\t\t\t\tnormalizedResourcePath === normalizedSourcePath ||\n\t\t\t\t\tnormalizedResourcePath.startsWith(`${normalizedSourcePath}${sep}`)\n\t\t\t\t) {\n\t\t\t\t\treturn createSourceInfo(resourcePath, metadata);\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\n\t\treturn undefined;\n\t}\n\n\tprivate getDefaultSourceInfoForPath(filePath: string): SourceInfo {\n\t\tif (filePath.startsWith(\"<\") && filePath.endsWith(\">\")) {\n\t\t\treturn {\n\t\t\t\tpath: filePath,\n\t\t\t\tsource: filePath.slice(1, -1).split(\":\")[0] || \"temporary\",\n\t\t\t\tscope: \"temporary\",\n\t\t\t\torigin: \"top-level\",\n\t\t\t};\n\t\t}\n\n\t\tconst normalizedPath = resolve(filePath);\n\t\tconst agentRoots = this.getAgentDirs().flatMap((agentDir) => [\n\t\t\tjoin(agentDir, \"skills\"),\n\t\t\tjoin(agentDir, \"prompts\"),\n\t\t\tjoin(agentDir, \"themes\"),\n\t\t\tjoin(agentDir, \"extensions\"),\n\t\t]);\n\t\tconst projectRoots = getProjectConfigDirs(this.cwd).flatMap((configDir) => [\n\t\t\tjoin(configDir, \"skills\"),\n\t\t\tjoin(configDir, \"prompts\"),\n\t\t\tjoin(configDir, \"themes\"),\n\t\t\tjoin(configDir, \"extensions\"),\n\t\t]);\n\n\t\tfor (const root of agentRoots) {\n\t\t\tif (this.isUnderPath(normalizedPath, root)) {\n\t\t\t\treturn { path: filePath, source: \"local\", scope: \"user\", origin: \"top-level\", baseDir: root };\n\t\t\t}\n\t\t}\n\n\t\tfor (const root of projectRoots) {\n\t\t\tif (this.isUnderPath(normalizedPath, root)) {\n\t\t\t\treturn { path: filePath, source: \"local\", scope: \"project\", origin: \"top-level\", baseDir: root };\n\t\t\t}\n\t\t}\n\n\t\treturn {\n\t\t\tpath: filePath,\n\t\t\tsource: \"local\",\n\t\t\tscope: \"temporary\",\n\t\t\torigin: \"top-level\",\n\t\t\tbaseDir: statSync(normalizedPath).isDirectory() ? normalizedPath : resolve(normalizedPath, \"..\"),\n\t\t};\n\t}\n\n\tprivate mergePaths(primary: string[], additional: string[]): string[] {\n\t\tconst merged: string[] = [];\n\t\tconst seen = new Set<string>();\n\n\t\tfor (const p of [...primary, ...additional]) {\n\t\t\tconst resolved = this.resolveResourcePath(p);\n\t\t\tconst canonicalPath = canonicalizePath(resolved);\n\t\t\tif (seen.has(canonicalPath)) continue;\n\t\t\tseen.add(canonicalPath);\n\t\t\tmerged.push(resolved);\n\t\t}\n\n\t\treturn merged;\n\t}\n\n\tprivate resolveResourcePath(p: string): string {\n\t\treturn resolvePath(p, this.cwd, { trim: true });\n\t}\n\n\tprivate loadThemes(\n\t\tpaths: string[],\n\t\tincludeDefaults: boolean = true,\n\t): {\n\t\tthemes: Theme[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t} {\n\t\tconst themes: Theme[] = [];\n\t\tconst diagnostics: ResourceDiagnostic[] = [];\n\t\tif (includeDefaults) {\n\t\t\tconst defaultDirs = [\n\t\t\t\t...this.getAgentDirs().map((agentDir) => join(agentDir, \"themes\")),\n\t\t\t\t...getProjectConfigDirs(this.cwd).map((configDir) => join(configDir, \"themes\")),\n\t\t\t];\n\n\t\t\tfor (const dir of defaultDirs) {\n\t\t\t\tthis.loadThemesFromDir(dir, themes, diagnostics);\n\t\t\t}\n\t\t}\n\n\t\tfor (const p of paths) {\n\t\t\tconst resolved = this.resolveResourcePath(p);\n\t\t\tif (!existsSync(resolved)) {\n\t\t\t\tdiagnostics.push({ type: \"warning\", message: \"theme path does not exist\", path: resolved });\n\t\t\t\tcontinue;\n\t\t\t}\n\n\t\t\ttry {\n\t\t\t\tconst stats = statSync(resolved);\n\t\t\t\tif (stats.isDirectory()) {\n\t\t\t\t\tthis.loadThemesFromDir(resolved, themes, diagnostics);\n\t\t\t\t} else if (stats.isFile() && resolved.endsWith(\".json\")) {\n\t\t\t\t\tthis.loadThemeFromFile(resolved, themes, diagnostics);\n\t\t\t\t} else {\n\t\t\t\t\tdiagnostics.push({ type: \"warning\", message: \"theme path is not a json file\", path: resolved });\n\t\t\t\t}\n\t\t\t} catch (error) {\n\t\t\t\tconst message = error instanceof Error ? error.message : \"failed to read theme path\";\n\t\t\t\tdiagnostics.push({ type: \"warning\", message, path: resolved });\n\t\t\t}\n\t\t}\n\n\t\treturn { themes, diagnostics };\n\t}\n\n\tprivate loadThemesFromDir(dir: string, themes: Theme[], diagnostics: ResourceDiagnostic[]): void {\n\t\tif (!existsSync(dir)) {\n\t\t\treturn;\n\t\t}\n\n\t\ttry {\n\t\t\tconst entries = readdirSync(dir, { withFileTypes: true });\n\t\t\tfor (const entry of entries) {\n\t\t\t\tlet isFile = entry.isFile();\n\t\t\t\tif (entry.isSymbolicLink()) {\n\t\t\t\t\ttry {\n\t\t\t\t\t\tisFile = statSync(join(dir, entry.name)).isFile();\n\t\t\t\t\t} catch {\n\t\t\t\t\t\tcontinue;\n\t\t\t\t\t}\n\t\t\t\t}\n\t\t\t\tif (!isFile) {\n\t\t\t\t\tcontinue;\n\t\t\t\t}\n\t\t\t\tif (!entry.name.endsWith(\".json\")) {\n\t\t\t\t\tcontinue;\n\t\t\t\t}\n\t\t\t\tthis.loadThemeFromFile(join(dir, entry.name), themes, diagnostics);\n\t\t\t}\n\t\t} catch (error) {\n\t\t\tconst message = error instanceof Error ? error.message : \"failed to read theme directory\";\n\t\t\tdiagnostics.push({ type: \"warning\", message, path: dir });\n\t\t}\n\t}\n\n\tprivate loadThemeFromFile(filePath: string, themes: Theme[], diagnostics: ResourceDiagnostic[]): void {\n\t\ttry {\n\t\t\tthemes.push(loadThemeFromPath(filePath));\n\t\t} catch (error) {\n\t\t\tconst message = error instanceof Error ? error.message : \"failed to load theme\";\n\t\t\tdiagnostics.push({ type: \"warning\", message, path: filePath });\n\t\t}\n\t}\n\n\tprivate resolveExtensionLoadPath(path: string): string {\n\t\treturn resolvePath(path, this.cwd, { normalizeUnicodeSpaces: true });\n\t}\n\n\tprivate async loadFinalExtensionSet(\n\t\textensionPaths: string[],\n\t\tpreTrustExtensions: LoadExtensionsResult | undefined,\n\t\tworkflowResourceProvider: WorkflowResourceProvider,\n\t): Promise<LoadExtensionsResult> {\n\t\tif (!preTrustExtensions) {\n\t\t\tconst loadExtensionsSpan = startTimingSpan(\"DefaultResourceLoader.reload.loadExtensions\");\n\t\t\tconst extensionsResult = await loadExtensions(\n\t\t\t\textensionPaths,\n\t\t\t\tthis.cwd,\n\t\t\t\tthis.eventBus,\n\t\t\t\tworkflowResourceProvider,\n\t\t\t);\n\t\t\tendTimingSpan(loadExtensionsSpan);\n\t\t\tconst inlineExtensionsSpan = startTimingSpan(\"DefaultResourceLoader.reload.loadInlineExtensionFactories\");\n\t\t\tconst inlineExtensions = await this.loadExtensionFactories(extensionsResult.runtime, workflowResourceProvider);\n\t\t\tendTimingSpan(inlineExtensionsSpan);\n\t\t\textensionsResult.extensions.push(...inlineExtensions.extensions);\n\t\t\textensionsResult.errors.push(...inlineExtensions.errors);\n\t\t\tthis.addExtensionConflictDiagnostics(extensionsResult);\n\t\t\treturn extensionsResult;\n\t\t}\n\n\t\tconst preloadedByPath = new Map(\n\t\t\tpreTrustExtensions.extensions\n\t\t\t\t.filter((extension) => !extension.path.startsWith(\"<inline:\"))\n\t\t\t\t.map((extension) => [extension.resolvedPath, extension]),\n\t\t);\n\t\tconst failedPreloadPaths = new Set(\n\t\t\tpreTrustExtensions.errors.map((error) => this.resolveExtensionLoadPath(error.path)),\n\t\t);\n\t\tconst remainingPaths = extensionPaths.filter((path) => {\n\t\t\tconst resolvedPath = this.resolveExtensionLoadPath(path);\n\t\t\treturn !preloadedByPath.has(resolvedPath) && !failedPreloadPaths.has(resolvedPath);\n\t\t});\n\t\tconst loadExtensionsSpan = startTimingSpan(\"DefaultResourceLoader.reload.loadExtensions\");\n\t\tconst remainingExtensions = await loadExtensions(\n\t\t\tremainingPaths,\n\t\t\tthis.cwd,\n\t\t\tthis.eventBus,\n\t\t\tworkflowResourceProvider,\n\t\t\tpreTrustExtensions.runtime,\n\t\t);\n\t\tendTimingSpan(loadExtensionsSpan);\n\t\tconst loadedByPath = new Map(preloadedByPath);\n\t\tfor (const extension of remainingExtensions.extensions) {\n\t\t\tloadedByPath.set(extension.resolvedPath, extension);\n\t\t}\n\n\t\tconst inlineExtensions = preTrustExtensions.extensions.filter((extension) =>\n\t\t\textension.path.startsWith(\"<inline:\"),\n\t\t);\n\t\tconst orderedExtensions = extensionPaths\n\t\t\t.map((path) => loadedByPath.get(this.resolveExtensionLoadPath(path)))\n\t\t\t.filter((extension): extension is Extension => extension !== undefined);\n\t\torderedExtensions.push(...inlineExtensions);\n\n\t\tconst extensionsResult: LoadExtensionsResult = {\n\t\t\textensions: orderedExtensions,\n\t\t\terrors: [...preTrustExtensions.errors, ...remainingExtensions.errors],\n\t\t\truntime: preTrustExtensions.runtime,\n\t\t};\n\t\tthis.addExtensionConflictDiagnostics(extensionsResult);\n\t\treturn extensionsResult;\n\t}\n\n\tprivate addExtensionConflictDiagnostics(extensionsResult: LoadExtensionsResult): void {\n\t\t// Detect extension conflicts (tools, commands, flags with same names from different extensions)\n\t\t// Keep all extensions loaded. Conflicts are reported as diagnostics, and precedence is handled by load order.\n\t\tconst conflicts = this.detectExtensionConflicts(extensionsResult.extensions);\n\t\tfor (const conflict of conflicts) {\n\t\t\textensionsResult.errors.push({ path: conflict.path, error: conflict.message });\n\t\t}\n\t}\n\n\n\tprivate async loadExtensionFactories(runtime: ExtensionRuntime, workflowResourceProvider: WorkflowResourceProvider): Promise<{\n\t\textensions: Extension[];\n\t\terrors: Array<{ path: string; error: string }>;\n\t}> {\n\t\tconst extensions: Extension[] = [];\n\t\tconst errors: Array<{ path: string; error: string }> = [];\n\n\t\tfor (const [index, factory] of this.extensionFactories.entries()) {\n\t\t\tconst extensionPath = `<inline:${index + 1}>`;\n\t\t\ttry {\n\t\t\t\tconst extension = await loadExtensionFromFactory(\n\t\t\t\t\tfactory,\n\t\t\t\t\tthis.cwd,\n\t\t\t\t\tthis.eventBus,\n\t\t\t\t\truntime,\n\t\t\t\t\textensionPath,\n\t\t\t\t\tworkflowResourceProvider,\n\t\t\t\t);\n\t\t\t\textensions.push(extension);\n\t\t\t} catch (error) {\n\t\t\t\tconst message = error instanceof Error ? error.message : \"failed to load extension\";\n\t\t\t\terrors.push({ path: extensionPath, error: message });\n\t\t\t}\n\t\t}\n\n\t\treturn { extensions, errors };\n\t}\n\n\tprivate dedupePrompts(prompts: PromptTemplate[]): { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] } {\n\t\tconst seen = new Map<string, PromptTemplate>();\n\t\tconst diagnostics: ResourceDiagnostic[] = [];\n\n\t\tfor (const prompt of prompts) {\n\t\t\tconst existing = seen.get(prompt.name);\n\t\t\tif (existing) {\n\t\t\t\tdiagnostics.push({\n\t\t\t\t\ttype: \"collision\",\n\t\t\t\t\tmessage: `name \"/${prompt.name}\" collision`,\n\t\t\t\t\tpath: prompt.filePath,\n\t\t\t\t\tcollision: {\n\t\t\t\t\t\tresourceType: \"prompt\",\n\t\t\t\t\t\tname: prompt.name,\n\t\t\t\t\t\twinnerPath: existing.filePath,\n\t\t\t\t\t\tloserPath: prompt.filePath,\n\t\t\t\t\t},\n\t\t\t\t});\n\t\t\t} else {\n\t\t\t\tseen.set(prompt.name, prompt);\n\t\t\t}\n\t\t}\n\n\t\treturn { prompts: Array.from(seen.values()), diagnostics };\n\t}\n\n\tprivate dedupeThemes(themes: Theme[]): { themes: Theme[]; diagnostics: ResourceDiagnostic[] } {\n\t\tconst seen = new Map<string, Theme>();\n\t\tconst diagnostics: ResourceDiagnostic[] = [];\n\n\t\tfor (const t of themes) {\n\t\t\tconst name = t.name ?? \"unnamed\";\n\t\t\tconst existing = seen.get(name);\n\t\t\tif (existing) {\n\t\t\t\tdiagnostics.push({\n\t\t\t\t\ttype: \"collision\",\n\t\t\t\t\tmessage: `name \"${name}\" collision`,\n\t\t\t\t\tpath: t.sourcePath,\n\t\t\t\t\tcollision: {\n\t\t\t\t\t\tresourceType: \"theme\",\n\t\t\t\t\t\tname,\n\t\t\t\t\t\twinnerPath: existing.sourcePath ?? \"<builtin>\",\n\t\t\t\t\t\tloserPath: t.sourcePath ?? \"<builtin>\",\n\t\t\t\t\t},\n\t\t\t\t});\n\t\t\t} else {\n\t\t\t\tseen.set(name, t);\n\t\t\t}\n\t\t}\n\n\t\treturn { themes: Array.from(seen.values()), diagnostics };\n\t}\n\n\tprivate discoverSystemPromptFile(): string | undefined {\n\t\tconst projectCandidates = this.settingsManager.isProjectTrusted()\n\t\t\t? getProjectConfigDirs(this.cwd).map((configDir) => join(configDir, \"SYSTEM.md\"))\n\t\t\t: [];\n\t\tconst candidates = [\n\t\t\t...projectCandidates,\n\t\t\t...this.getAgentDirs().map((agentDir) => join(agentDir, \"SYSTEM.md\")),\n\t\t];\n\t\treturn candidates.find((candidate) => existsSync(candidate));\n\t}\n\n\tprivate discoverAppendSystemPromptFile(): string | undefined {\n\t\tconst projectCandidates = this.settingsManager.isProjectTrusted()\n\t\t\t? getProjectConfigDirs(this.cwd).map((configDir) => join(configDir, \"APPEND_SYSTEM.md\"))\n\t\t\t: [];\n\t\tconst candidates = [\n\t\t\t...projectCandidates,\n\t\t\t...this.getAgentDirs().map((agentDir) => join(agentDir, \"APPEND_SYSTEM.md\")),\n\t\t];\n\t\treturn candidates.find((candidate) => existsSync(candidate));\n\t}\n\n\tprivate getAgentDirs(): string[] {\n\t\treturn this.agentDir === getAgentDir() ? getAgentDirs() : [this.agentDir];\n\t}\n\n\tprivate isUnderPath(target: string, root: string): boolean {\n\t\tconst normalizedRoot = resolve(root);\n\t\tif (target === normalizedRoot) {\n\t\t\treturn true;\n\t\t}\n\t\tconst prefix = normalizedRoot.endsWith(sep) ? normalizedRoot : `${normalizedRoot}${sep}`;\n\t\treturn target.startsWith(prefix);\n\t}\n\n\tprivate detectExtensionConflicts(extensions: Extension[]): Array<{ path: string; message: string }> {\n\t\tconst conflicts: Array<{ path: string; message: string }> = [];\n\n\t\t// Track which extension registered each tool and flag\n\t\tconst toolOwners = new Map<string, string>();\n\t\tconst flagOwners = new Map<string, string>();\n\n\t\tfor (const ext of extensions) {\n\t\t\t// Check tools\n\t\t\tfor (const toolName of ext.tools.keys()) {\n\t\t\t\tconst existingOwner = toolOwners.get(toolName);\n\t\t\t\tif (existingOwner && existingOwner !== ext.path) {\n\t\t\t\t\tconflicts.push({\n\t\t\t\t\t\tpath: ext.path,\n\t\t\t\t\t\tmessage: `Tool \"${toolName}\" conflicts with ${existingOwner}`,\n\t\t\t\t\t});\n\t\t\t\t} else {\n\t\t\t\t\ttoolOwners.set(toolName, ext.path);\n\t\t\t\t}\n\t\t\t}\n\n\t\t\t// Check flags\n\t\t\tfor (const flagName of ext.flags.keys()) {\n\t\t\t\tconst existingOwner = flagOwners.get(flagName);\n\t\t\t\tif (existingOwner && existingOwner !== ext.path) {\n\t\t\t\t\tconflicts.push({\n\t\t\t\t\t\tpath: ext.path,\n\t\t\t\t\t\tmessage: `Flag \"--${flagName}\" conflicts with ${existingOwner}`,\n\t\t\t\t\t});\n\t\t\t\t} else {\n\t\t\t\t\tflagOwners.set(flagName, ext.path);\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\n\t\treturn conflicts;\n\t}\n}\n"]}