@bastani/atomic 0.8.28-alpha.1 → 0.8.28-alpha.2

package/examples/extensions/preset.ts

@@ -6,8 +6,8 @@
  * and can be activated via CLI flag, /preset command, or Ctrl+Shift+U to cycle.
  *
  * Config files (merged, project takes precedence):
- * - ~/.pi/agent/presets.json (global)
- * - <cwd>/.pi/presets.json (project-local)
+ * - ~/.atomic/agent/presets.json (global)
+ * - <cwd>/.atomic/presets.json (project-local; legacy <cwd>/.pi/presets.json also works)
  *
  * Example presets.json:
  * ```json
@@ -30,7 +30,7 @@
  * ```
  *
  * Usage:
- * - `pi --preset plan` - start with plan preset
+ * - `atomic --preset plan` - start with plan preset
  * - `/preset` - show selector to switch presets mid-session
  * - `/preset implement` - switch to implement preset directly
  * - `Ctrl+Shift+U` - cycle through presets
@@ -67,9 +67,10 @@ interface PresetsConfig {
  * Load presets from config files.
  * Project-local presets override global presets with the same name.
  */
-function loadPresets(cwd: string): PresetsConfig {
+function loadPresets(cwd: string, includeProjectPresets: boolean): PresetsConfig {
 	const globalPath = join(getAgentDir(), "presets.json");
-	const projectPath = join(cwd, ".pi", "presets.json");
+	const projectPath = join(cwd, ".atomic", "presets.json");
+	const legacyProjectPath = join(cwd, ".pi", "presets.json");
 
 	let globalPresets: PresetsConfig = {};
 	let projectPresets: PresetsConfig = {};
@@ -84,13 +85,14 @@ function loadPresets(cwd: string): PresetsConfig {
 		}
 	}
 
-	// Load project presets
-	if (existsSync(projectPath)) {
+	// Load project presets only after project trust (Atomic path first; legacy Pi path as fallback)
+	const resolvedProjectPath = existsSync(projectPath) ? projectPath : legacyProjectPath;
+	if (includeProjectPresets && existsSync(resolvedProjectPath)) {
 		try {
-			const content = readFileSync(projectPath, "utf-8");
+			const content = readFileSync(resolvedProjectPath, "utf-8");
 			projectPresets = JSON.parse(content);
 		} catch (err) {
-			console.error(`Failed to load project presets from ${projectPath}: ${err}`);
+			console.error(`Failed to load project presets from ${resolvedProjectPath}: ${err}`);
 		}
 	}
 
@@ -200,7 +202,7 @@ export default function presetExtension(pi: ExtensionAPI) {
 		const presetNames = Object.keys(presets);
 
 		if (presetNames.length === 0) {
-			ctx.ui.notify("No presets defined. Add presets to ~/.pi/agent/presets.json or .pi/presets.json", "warning");
+			ctx.ui.notify("No presets defined. Add presets to ~/.atomic/agent/presets.json or .atomic/presets.json (legacy .pi/presets.json also works)", "warning");
 			return;
 		}
 
@@ -308,7 +310,7 @@ export default function presetExtension(pi: ExtensionAPI) {
 	async function cyclePreset(ctx: ExtensionContext): Promise<void> {
 		const presetNames = getPresetOrder();
 		if (presetNames.length === 0) {
-			ctx.ui.notify("No presets defined. Add presets to ~/.pi/agent/presets.json or .pi/presets.json", "warning");
+			ctx.ui.notify("No presets defined. Add presets to ~/.atomic/agent/presets.json or .atomic/presets.json (legacy .pi/presets.json also works)", "warning");
 			return;
 		}
 
@@ -388,7 +390,7 @@ export default function presetExtension(pi: ExtensionAPI) {
 	// Initialize on session start
 	pi.on("session_start", async (_event, ctx) => {
 		// Load presets from config files
-		presets = loadPresets(ctx.cwd);
+		presets = loadPresets(ctx.cwd, ctx.isProjectTrusted());
 
 		// Check for --preset flag
 		const presetFlag = pi.getFlag("preset");

package/examples/extensions/project-trust.ts

@@ -0,0 +1,64 @@
+/**
+ * Project Trust Extension
+ *
+ * Demonstrates the project_trust event. Install globally or pass via -e:
+ *
+ *   mkdir -p ~/.atomic/agent/extensions
+ *   cp packages/coding-agent/examples/extensions/project-trust.ts ~/.atomic/agent/extensions/
+ *
+ * Or:
+ *
+ *   atomic -e packages/coding-agent/examples/extensions/project-trust.ts
+ *
+ * Try it in a project containing .atomic (or legacy .pi), AGENTS.md/CLAUDE.md, or .agents/skills.
+ */
+
+import type { ExtensionAPI, ProjectTrustEventResult } from "@bastani/atomic";
+
+export default function (pi: ExtensionAPI) {
+	let loadCount = 0;
+	loadCount++;
+
+	// Multiple handlers in one extension are allowed. The first handler that returns
+	// { trusted: "yes" } or { trusted: "no" } wins and suppresses the built-in
+	// trust prompt. Return { trusted: "undecided" } to let another handler or the
+	// built-in flow decide.
+	pi.on("project_trust", async (event, ctx): Promise<ProjectTrustEventResult> => {
+		ctx.ui.notify(`project_trust fired for ${event.cwd} (mode: ${ctx.mode}, load: ${loadCount})`, "info");
+
+		if (!ctx.hasUI) {
+			return { trusted: "undecided" };
+		}
+
+		const choice = await ctx.ui.select(`Project trust for:\n${event.cwd}`, [
+			"Trust and remember",
+			"Trust with note and remember",
+			"Trust this session",
+			"Do not trust this session",
+			"Let built-in prompt decide",
+		]);
+
+		if (choice === "Trust with note and remember") {
+			const note = await ctx.ui.input("Project trust note", "Optional note for this demo");
+			ctx.ui.notify(note ? `Recorded demo note: ${note}` : "No demo note entered", "info");
+			return { trusted: "yes", remember: true };
+		}
+		if (choice === "Trust and remember") {
+			return { trusted: "yes", remember: true };
+		}
+		if (choice === "Trust this session") {
+			return { trusted: "yes" };
+		}
+		if (choice === "Do not trust this session") {
+			return { trusted: "no" };
+		}
+		if (choice === "Let built-in prompt decide") {
+			return { trusted: "undecided" };
+		}
+		return { trusted: "undecided" };
+	});
+
+	pi.on("session_start", (_event, ctx) => {
+		ctx.ui.notify(`project-trust example loaded after trust resolution in ${ctx.cwd}`, "info");
+	});
+}

package/examples/extensions/prompt-customizer.ts

@@ -8,7 +8,7 @@
  * are currently active, respecting whatever the user has configured.
  *
  * Usage:
- * 1. Copy this file to ~/.pi/agent/extensions/ or your project's .pi/extensions/
+ * 1. Copy this file to ~/.atomic/agent/extensions/ or your project's .atomic/extensions/ (legacy .pi/extensions/ also works)
  * 2. Use the extension — it automatically adapts to your active tools and skills
  */
 

package/examples/extensions/qna.ts

@@ -31,7 +31,7 @@ export default function (pi: ExtensionAPI) {
 	pi.registerCommand("qna", {
 		description: "Extract questions from last assistant message into editor",
 		handler: async (_args, ctx) => {
-			if (!ctx.hasUI) {
+			if (ctx.mode !== "tui") {
 				ctx.ui.notify("qna requires interactive mode", "error");
 				return;
 			}

package/examples/extensions/question.ts

@@ -41,7 +41,7 @@ export default function question(pi: ExtensionAPI) {
 		parameters: QuestionParams,
 
 		async execute(_toolCallId, params, _signal, _onUpdate, ctx) {
-			if (!ctx.hasUI) {
+			if (ctx.mode !== "tui") {
 				return {
 					content: [{ type: "text", text: "Error: UI not available (running in non-interactive mode)" }],
 					details: {

package/examples/extensions/questionnaire.ts

@@ -82,7 +82,7 @@ export default function questionnaire(pi: ExtensionAPI) {
 		parameters: QuestionnaireParams,
 
 		async execute(_toolCallId, params, _signal, _onUpdate, ctx) {
-			if (!ctx.hasUI) {
+			if (ctx.mode !== "tui") {
 				return errorResult("Error: UI not available (running in non-interactive mode)");
 			}
 			if (params.questions.length === 0) {

package/examples/extensions/rainbow-editor.ts

@@ -1,7 +1,7 @@
 /**
  * Rainbow Editor - highlights "ultrathink" with animated shine effect
  *
- * Usage: pi --extension ./examples/extensions/rainbow-editor.ts
+ * Usage: atomic --extension ./examples/extensions/rainbow-editor.ts
  */
 
 import { CustomEditor, type ExtensionAPI } from "@bastani/atomic";

package/examples/extensions/sandbox/index.ts

@@ -10,10 +10,10 @@
  * via `tool_call` input mutation without replacing the tool.
  *
  * Config files (merged, project takes precedence):
- * - ~/.pi/agent/extensions/sandbox.json (global)
- * - <cwd>/.pi/sandbox.json (project-local)
+ * - ~/.atomic/agent/extensions/sandbox.json (global)
+ * - <cwd>/.atomic/sandbox.json (project-local; legacy <cwd>/.pi/sandbox.json also works)
  *
- * Example .pi/sandbox.json:
+ * Example .atomic/sandbox.json:
  * ```json
  * {
  *   "enabled": true,
@@ -30,13 +30,13 @@
  * ```
  *
  * Usage:
- * - `pi -e ./sandbox` - sandbox enabled with default/config settings
- * - `pi -e ./sandbox --no-sandbox` - disable sandboxing
+ * - `atomic -e ./sandbox` - sandbox enabled with default/config settings
+ * - `atomic -e ./sandbox --no-sandbox` - disable sandboxing
  * - `/sandbox` - show current sandbox configuration
  *
  * Setup:
- * 1. Copy sandbox/ directory to ~/.pi/agent/extensions/
- * 2. Run `npm install` in ~/.pi/agent/extensions/sandbox/
+ * 1. Copy sandbox/ directory to ~/.atomic/agent/extensions/
+ * 2. Run `npm install` in ~/.atomic/agent/extensions/sandbox/
  *
  * Linux also requires: bubblewrap, socat, ripgrep
  */
@@ -76,8 +76,9 @@ const DEFAULT_CONFIG: SandboxConfig = {
 	},
 };
 
-function loadConfig(cwd: string): SandboxConfig {
-	const projectConfigPath = join(cwd, ".pi", "sandbox.json");
+function loadConfig(cwd: string, includeProjectConfig: boolean): SandboxConfig {
+	const projectConfigPath = join(cwd, ".atomic", "sandbox.json");
+	const legacyProjectConfigPath = join(cwd, ".pi", "sandbox.json");
 	const globalConfigPath = join(getAgentDir(), "extensions", "sandbox.json");
 
 	let globalConfig: Partial<SandboxConfig> = {};
@@ -91,11 +92,12 @@ function loadConfig(cwd: string): SandboxConfig {
 		}
 	}
 
-	if (existsSync(projectConfigPath)) {
+	const resolvedProjectConfigPath = existsSync(projectConfigPath) ? projectConfigPath : legacyProjectConfigPath;
+	if (includeProjectConfig && existsSync(resolvedProjectConfigPath)) {
 		try {
-			projectConfig = JSON.parse(readFileSync(projectConfigPath, "utf-8"));
+			projectConfig = JSON.parse(readFileSync(resolvedProjectConfigPath, "utf-8"));
 		} catch (e) {
-			console.error(`Warning: Could not parse ${projectConfigPath}: ${e}`);
+			console.error(`Warning: Could not parse ${resolvedProjectConfigPath}: ${e}`);
 		}
 	}
 
@@ -240,7 +242,7 @@ export default function (pi: ExtensionAPI) {
 			return;
 		}
 
-		const config = loadConfig(ctx.cwd);
+		const config = loadConfig(ctx.cwd, ctx.isProjectTrusted());
 
 		if (!config.enabled) {
 			sandboxEnabled = false;
@@ -302,7 +304,7 @@ export default function (pi: ExtensionAPI) {
 				return;
 			}
 
-			const config = loadConfig(ctx.cwd);
+			const config = loadConfig(ctx.cwd, ctx.isProjectTrusted());
 			const lines = [
 				"Sandbox Configuration:",
 				"",

package/examples/extensions/sandbox/package-lock.json

@@ -1,92 +1,92 @@
 {
-	"name": "pi-extension-sandbox",
-	"version": "1.4.0",
-	"lockfileVersion": 3,
-	"requires": true,
-	"packages": {
-		"": {
-			"name": "pi-extension-sandbox",
-			"version": "1.4.0",
-			"dependencies": {
-				"@anthropic-ai/sandbox-runtime": "^0.0.26"
-			}
-		},
-		"node_modules/@anthropic-ai/sandbox-runtime": {
-			"version": "0.0.26",
-			"resolved": "https://registry.npmjs.org/@anthropic-ai/sandbox-runtime/-/sandbox-runtime-0.0.26.tgz",
-			"integrity": "sha512-DYV5LSsVMnzq0lbfaYMSpxZPUMAx4+hy343dRss+pVCLIfF62qOhxpYfZ5TmOk1GTDQm5f9wPprMNSStmnsV4w==",
-			"license": "Apache-2.0",
-			"dependencies": {
-				"@pondwader/socks5-server": "^1.0.10",
-				"@types/lodash-es": "^4.17.12",
-				"commander": "^12.1.0",
-				"lodash-es": "^4.17.21",
-				"shell-quote": "^1.8.3",
-				"zod": "^3.24.1"
-			},
-			"bin": {
-				"srt": "dist/cli.js"
-			},
-			"engines": {
-				"node": ">=18.0.0"
-			}
-		},
-		"node_modules/@pondwader/socks5-server": {
-			"version": "1.0.10",
-			"resolved": "https://registry.npmjs.org/@pondwader/socks5-server/-/socks5-server-1.0.10.tgz",
-			"integrity": "sha512-bQY06wzzR8D2+vVCUoBsr5QS2U6UgPUQRmErNwtsuI6vLcyRKkafjkr3KxbtGFf9aBBIV2mcvlsKD1UYaIV+sg==",
-			"license": "MIT"
-		},
-		"node_modules/@types/lodash": {
-			"version": "4.17.23",
-			"resolved": "https://registry.npmjs.org/@types/lodash/-/lodash-4.17.23.tgz",
-			"integrity": "sha512-RDvF6wTulMPjrNdCoYRC8gNR880JNGT8uB+REUpC2Ns4pRqQJhGz90wh7rgdXDPpCczF3VGktDuFGVnz8zP7HA==",
-			"license": "MIT"
-		},
-		"node_modules/@types/lodash-es": {
-			"version": "4.17.12",
-			"resolved": "https://registry.npmjs.org/@types/lodash-es/-/lodash-es-4.17.12.tgz",
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-			"license": "MIT",
-			"dependencies": {
-				"@types/lodash": "*"
-			}
-		},
-		"node_modules/commander": {
-			"version": "12.1.0",
-			"resolved": "https://registry.npmjs.org/commander/-/commander-12.1.0.tgz",
-			"integrity": "sha512-Vw8qHK3bZM9y/P10u3Vib8o/DdkvA2OtPtZvD871QKjy74Wj1WSKFILMPRPSdUSx5RFK1arlJzEtA4PkFgnbuA==",
-			"license": "MIT",
-			"engines": {
-				"node": ">=18"
-			}
-		},
-		"node_modules/lodash-es": {
-			"version": "4.18.1",
-			"resolved": "https://registry.npmjs.org/lodash-es/-/lodash-es-4.18.1.tgz",
-			"integrity": "sha512-J8xewKD/Gk22OZbhpOVSwcs60zhd95ESDwezOFuA3/099925PdHJ7OFHNTGtajL3AlZkykD32HykiMo+BIBI8A==",
-			"license": "MIT"
-		},
-		"node_modules/shell-quote": {
-			"version": "1.8.3",
-			"resolved": "https://registry.npmjs.org/shell-quote/-/shell-quote-1.8.3.tgz",
-			"integrity": "sha512-ObmnIF4hXNg1BqhnHmgbDETF8dLPCggZWBjkQfhZpbszZnYur5DUljTcCHii5LC3J5E0yeO/1LIMyH+UvHQgyw==",
-			"license": "MIT",
-			"engines": {
-				"node": ">= 0.4"
-			},
-			"funding": {
-				"url": "https://github.com/sponsors/ljharb"
-			}
-		},
-		"node_modules/zod": {
-			"version": "3.25.76",
-			"resolved": "https://registry.npmjs.org/zod/-/zod-3.25.76.tgz",
-			"integrity": "sha512-gzUt/qt81nXsFGKIFcC3YnfEAx5NkunCfnDlvuBSSFS02bcXu4Lmea0AFIUwbLWxWPx3d9p8S5QoaujKcNQxcQ==",
-			"license": "MIT",
-			"funding": {
-				"url": "https://github.com/sponsors/colinhacks"
-			}
-		}
-	}
+  "name": "atomic-extension-sandbox",
+  "version": "1.9.1",
+  "lockfileVersion": 3,
+  "requires": true,
+  "packages": {
+    "": {
+      "name": "atomic-extension-sandbox",
+      "version": "1.9.1",
+      "dependencies": {
+        "@anthropic-ai/sandbox-runtime": "^0.0.26"
+      }
+    },
+    "node_modules/@anthropic-ai/sandbox-runtime": {
+      "version": "0.0.26",
+      "resolved": "https://registry.npmjs.org/@anthropic-ai/sandbox-runtime/-/sandbox-runtime-0.0.26.tgz",
+      "integrity": "sha512-DYV5LSsVMnzq0lbfaYMSpxZPUMAx4+hy343dRss+pVCLIfF62qOhxpYfZ5TmOk1GTDQm5f9wPprMNSStmnsV4w==",
+      "license": "Apache-2.0",
+      "dependencies": {
+        "@pondwader/socks5-server": "^1.0.10",
+        "@types/lodash-es": "^4.17.12",
+        "commander": "^12.1.0",
+        "lodash-es": "^4.17.21",
+        "shell-quote": "^1.8.3",
+        "zod": "^3.24.1"
+      },
+      "bin": {
+        "srt": "dist/cli.js"
+      },
+      "engines": {
+        "node": ">=18.0.0"
+      }
+    },
+    "node_modules/@pondwader/socks5-server": {
+      "version": "1.0.10",
+      "resolved": "https://registry.npmjs.org/@pondwader/socks5-server/-/socks5-server-1.0.10.tgz",
+      "integrity": "sha512-bQY06wzzR8D2+vVCUoBsr5QS2U6UgPUQRmErNwtsuI6vLcyRKkafjkr3KxbtGFf9aBBIV2mcvlsKD1UYaIV+sg==",
+      "license": "MIT"
+    },
+    "node_modules/@types/lodash": {
+      "version": "4.17.23",
+      "resolved": "https://registry.npmjs.org/@types/lodash/-/lodash-4.17.23.tgz",
+      "integrity": "sha512-RDvF6wTulMPjrNdCoYRC8gNR880JNGT8uB+REUpC2Ns4pRqQJhGz90wh7rgdXDPpCczF3VGktDuFGVnz8zP7HA==",
+      "license": "MIT"
+    },
+    "node_modules/@types/lodash-es": {
+      "version": "4.17.12",
+      "resolved": "https://registry.npmjs.org/@types/lodash-es/-/lodash-es-4.17.12.tgz",
+      "integrity": "sha512-0NgftHUcV4v34VhXm8QBSftKVXtbkBG3ViCjs6+eJ5a6y6Mi/jiFGPc1sC7QK+9BFhWrURE3EOggmWaSxL9OzQ==",
+      "license": "MIT",
+      "dependencies": {
+        "@types/lodash": "*"
+      }
+    },
+    "node_modules/commander": {
+      "version": "12.1.0",
+      "resolved": "https://registry.npmjs.org/commander/-/commander-12.1.0.tgz",
+      "integrity": "sha512-Vw8qHK3bZM9y/P10u3Vib8o/DdkvA2OtPtZvD871QKjy74Wj1WSKFILMPRPSdUSx5RFK1arlJzEtA4PkFgnbuA==",
+      "license": "MIT",
+      "engines": {
+        "node": ">=18"
+      }
+    },
+    "node_modules/lodash-es": {
+      "version": "4.18.1",
+      "resolved": "https://registry.npmjs.org/lodash-es/-/lodash-es-4.18.1.tgz",
+      "integrity": "sha512-J8xewKD/Gk22OZbhpOVSwcs60zhd95ESDwezOFuA3/099925PdHJ7OFHNTGtajL3AlZkykD32HykiMo+BIBI8A==",
+      "license": "MIT"
+    },
+    "node_modules/shell-quote": {
+      "version": "1.8.4",
+      "resolved": "https://registry.npmjs.org/shell-quote/-/shell-quote-1.8.4.tgz",
+      "integrity": "sha512-VsC6n6vz1ihYYyZZwX7YZSF5l5x36ca17OC+a69h94YqB7X6XLwf+5MOgynYir2SLFUbl8gIYvBo8K8RoNQ6bQ==",
+      "license": "MIT",
+      "engines": {
+        "node": ">= 0.4"
+      },
+      "funding": {
+        "url": "https://github.com/sponsors/ljharb"
+      }
+    },
+    "node_modules/zod": {
+      "version": "3.25.76",
+      "resolved": "https://registry.npmjs.org/zod/-/zod-3.25.76.tgz",
+      "integrity": "sha512-gzUt/qt81nXsFGKIFcC3YnfEAx5NkunCfnDlvuBSSFS02bcXu4Lmea0AFIUwbLWxWPx3d9p8S5QoaujKcNQxcQ==",
+      "license": "MIT",
+      "funding": {
+        "url": "https://github.com/sponsors/colinhacks"
+      }
+    }
+  }
 }

package/examples/extensions/sandbox/package.json

@@ -1,19 +1,19 @@
 {
-	"name": "pi-extension-sandbox",
-	"private": true,
-	"version": "1.4.0",
-	"type": "module",
-	"scripts": {
-		"clean": "echo 'nothing to clean'",
-		"build": "echo 'nothing to build'",
-		"check": "echo 'nothing to check'"
-	},
-	"pi": {
-		"extensions": [
-			"./index.ts"
-		]
-	},
-	"dependencies": {
-		"@anthropic-ai/sandbox-runtime": "^0.0.26"
-	}
+  "name": "atomic-extension-sandbox",
+  "private": true,
+  "version": "1.9.1",
+  "type": "module",
+  "scripts": {
+    "clean": "echo 'nothing to clean'",
+    "build": "echo 'nothing to build'",
+    "check": "echo 'nothing to check'"
+  },
+  "dependencies": {
+    "@anthropic-ai/sandbox-runtime": "^0.0.26"
+  },
+  "atomic": {
+    "extensions": [
+      "./index.ts"
+    ]
+  }
 }

package/examples/extensions/snake.ts

@@ -311,7 +311,7 @@ export default function (pi: ExtensionAPI) {
 		description: "Play Snake!",
 
 		handler: async (_args, ctx) => {
-			if (!ctx.hasUI) {
+			if (ctx.mode !== "tui") {
 				ctx.ui.notify("Snake requires interactive mode", "error");
 				return;
 			}

package/examples/extensions/space-invaders.ts

@@ -529,7 +529,7 @@ export default function (pi: ExtensionAPI) {
 		description: "Play Space Invaders!",
 
 		handler: async (_args, ctx) => {
-			if (!ctx.hasUI) {
+			if (ctx.mode !== "tui") {
 				ctx.ui.notify("Space Invaders requires interactive mode", "error");
 				return;
 			}

package/examples/extensions/ssh.ts

@@ -5,8 +5,8 @@
  * When --ssh is provided, read/write/edit/bash run on the remote.
  *
  * Usage:
- *   pi -e ./ssh.ts --ssh user@host
- *   pi -e ./ssh.ts --ssh user@host:/remote/path
+ *   atomic -e ./ssh.ts --ssh user@host
+ *   atomic -e ./ssh.ts --ssh user@host:/remote/path
  *
  * Requirements:
  *   - SSH key-based auth (no password prompts)

package/examples/extensions/subagent/README.md

@@ -4,7 +4,7 @@ Delegate tasks to specialized subagents with isolated context windows.
 
 ## Features
 
-- **Isolated context**: Each subagent runs in a separate `pi` process
+- **Isolated context**: Each subagent runs in a separate `atomic` process
 - **Streaming output**: See tool calls and progress as they happen
 - **Parallel streaming**: All parallel tasks stream updates simultaneously
 - **Markdown rendering**: Final output rendered with proper formatting (expanded view)
@@ -35,30 +35,30 @@ From the repository root, symlink the files:
 
 ```bash
 # Symlink the extension (must be in a subdirectory with index.ts)
-mkdir -p ~/.pi/agent/extensions/subagent
-ln -sf "$(pwd)/packages/coding-agent/examples/extensions/subagent/index.ts" ~/.pi/agent/extensions/subagent/index.ts
-ln -sf "$(pwd)/packages/coding-agent/examples/extensions/subagent/agents.ts" ~/.pi/agent/extensions/subagent/agents.ts
+mkdir -p ~/.atomic/agent/extensions/subagent
+ln -sf "$(pwd)/packages/coding-agent/examples/extensions/subagent/index.ts" ~/.atomic/agent/extensions/subagent/index.ts
+ln -sf "$(pwd)/packages/coding-agent/examples/extensions/subagent/agents.ts" ~/.atomic/agent/extensions/subagent/agents.ts
 
 # Symlink agents
-mkdir -p ~/.pi/agent/agents
+mkdir -p ~/.atomic/agent/agents
 for f in packages/coding-agent/examples/extensions/subagent/agents/*.md; do
-  ln -sf "$(pwd)/$f" ~/.pi/agent/agents/$(basename "$f")
+  ln -sf "$(pwd)/$f" ~/.atomic/agent/agents/$(basename "$f")
 done
 
 # Symlink workflow prompts
-mkdir -p ~/.pi/agent/prompts
+mkdir -p ~/.atomic/agent/prompts
 for f in packages/coding-agent/examples/extensions/subagent/prompts/*.md; do
-  ln -sf "$(pwd)/$f" ~/.pi/agent/prompts/$(basename "$f")
+  ln -sf "$(pwd)/$f" ~/.atomic/agent/prompts/$(basename "$f")
 done
 ```
 
 ## Security Model
 
-This tool executes a separate `pi` subprocess with a delegated system prompt and tool/model configuration.
+This tool executes a separate `atomic` subprocess with a delegated system prompt and tool/model configuration.
 
-**Project-local agents** (`.pi/agents/*.md`) are repo-controlled prompts that can instruct the model to read files, run bash commands, etc.
+**Project-local agents** (`.atomic/agents/*.md`, with legacy `.pi/agents/*.md` fallback) are repo-controlled prompts that can instruct the model to read files, run bash commands, etc.
 
-**Default behavior:** Only loads **user-level agents** from `~/.pi/agent/agents`.
+**Default behavior:** Only loads **user-level agents** from `~/.atomic/agent/agents`.
 
 To enable project-local agents, pass `agentScope: "both"` (or `"project"`). Only do this for repositories you trust.
 
@@ -136,8 +136,8 @@ System prompt for the agent goes here.
 ```
 
 **Locations:**
-- `~/.pi/agent/agents/*.md` - User-level (always loaded)
-- `.pi/agents/*.md` - Project-level (only with `agentScope: "project"` or `"both"`)
+- `~/.atomic/agent/agents/*.md` - User-level (always loaded)
+- `.atomic/agents/*.md` - Project-level (legacy `.pi/agents/*.md` also works) (only with `agentScope: "project"` or `"both"`)
 
 Project agents override user agents with the same name when `agentScope: "both"`.
 

package/examples/extensions/subagent/agents.ts

@@ -85,8 +85,10 @@ function isDirectory(p: string): boolean {
 function findNearestProjectAgentsDir(cwd: string): string | null {
 	let currentDir = cwd;
 	while (true) {
-		const candidate = path.join(currentDir, ".pi", "agents");
-		if (isDirectory(candidate)) return candidate;
+		const atomicCandidate = path.join(currentDir, ".atomic", "agents");
+		if (isDirectory(atomicCandidate)) return atomicCandidate;
+		const legacyCandidate = path.join(currentDir, ".pi", "agents");
+		if (isDirectory(legacyCandidate)) return legacyCandidate;
 
 		const parentDir = path.dirname(currentDir);
 		if (parentDir === currentDir) return null;

package/examples/extensions/subagent/index.ts

@@ -1,7 +1,7 @@
 /**
  * Subagent Tool - Delegate tasks to specialized agents
  *
- * Spawns a separate `pi` process for each subagent invocation,
+ * Spawns a separate `atomic` process for each subagent invocation,
  * giving it an isolated context window.
  *
  * Supports three modes:
@@ -249,7 +249,7 @@ async function writePromptToTempFile(
   return { dir: tmpDir, filePath };
 }
 
-function getPiInvocation(args: string[]): { command: string; args: string[] } {
+function getAtomicInvocation(args: string[]): { command: string; args: string[] } {
   const currentScript = process.argv[1];
   const isBunVirtualScript = currentScript?.startsWith("/$bunfs/root/");
   if (currentScript && !isBunVirtualScript && fs.existsSync(currentScript)) {
@@ -262,7 +262,7 @@ function getPiInvocation(args: string[]): { command: string; args: string[] } {
     return { command: process.execPath, args };
   }
 
-  return { command: "pi", args };
+  return { command: APP_NAME, args };
 }
 
 type OnUpdateCallback = (partial: AgentToolResult<SubagentDetails>) => void;
@@ -356,7 +356,7 @@ async function runSingleAgent(
     let wasAborted = false;
 
     const exitCode = await new Promise<number>((resolve) => {
-      const invocation = getPiInvocation(args);
+      const invocation = getAtomicInvocation(args);
       const proc = spawn(invocation.command, invocation.args, {
         cwd: cwd ?? defaultCwd,
         shell: false,
@@ -518,8 +518,8 @@ export default function (pi: ExtensionAPI) {
     description: [
       "Delegate tasks to specialized subagents with isolated context.",
       "Modes: single (agent + task), parallel (tasks array), chain (sequential with {previous} placeholder).",
-      'Default agent scope is "user" (from ~/.pi/agent/agents).',
-      'To enable project-local agents in .pi/agents, set agentScope: "both" (or "project").',
+      'Default agent scope is "user" (from ~/.atomic/agent/agents).',
+      'To enable project-local agents in .atomic/agents (legacy .pi/agents also works), set agentScope: "both" (or "project").',
     ].join(" "),
     parameters: SubagentParams,