@bastani/atomic 0.6.8 → 0.7.0-2

package/.agents/skills/pdf/reference.md

@@ -1,612 +0,0 @@
-# PDF Processing Advanced Reference
-
-This document contains advanced PDF processing features, detailed examples, and additional libraries not covered in the main skill instructions.
-
-## pypdfium2 Library (Apache/BSD License)
-
-### Overview
-pypdfium2 is a Python binding for PDFium (Chromium's PDF library). It's excellent for fast PDF rendering, image generation, and serves as a PyMuPDF replacement.
-
-### Render PDF to Images
-```python
-import pypdfium2 as pdfium
-from PIL import Image
-
-# Load PDF
-pdf = pdfium.PdfDocument("document.pdf")
-
-# Render page to image
-page = pdf[0]  # First page
-bitmap = page.render(
-    scale=2.0,  # Higher resolution
-    rotation=0  # No rotation
-)
-
-# Convert to PIL Image
-img = bitmap.to_pil()
-img.save("page_1.png", "PNG")
-
-# Process multiple pages
-for i, page in enumerate(pdf):
-    bitmap = page.render(scale=1.5)
-    img = bitmap.to_pil()
-    img.save(f"page_{i+1}.jpg", "JPEG", quality=90)
-```
-
-### Extract Text with pypdfium2
-```python
-import pypdfium2 as pdfium
-
-pdf = pdfium.PdfDocument("document.pdf")
-for i, page in enumerate(pdf):
-    text = page.get_text()
-    print(f"Page {i+1} text length: {len(text)} chars")
-```
-
-## JavaScript Libraries
-
-### pdf-lib (MIT License)
-
-pdf-lib is a powerful JavaScript library for creating and modifying PDF documents in any JavaScript environment.
-
-#### Load and Manipulate Existing PDF
-```javascript
-import { PDFDocument } from 'pdf-lib';
-import fs from 'fs';
-
-async function manipulatePDF() {
-    // Load existing PDF
-    const existingPdfBytes = fs.readFileSync('input.pdf');
-    const pdfDoc = await PDFDocument.load(existingPdfBytes);
-
-    // Get page count
-    const pageCount = pdfDoc.getPageCount();
-    console.log(`Document has ${pageCount} pages`);
-
-    // Add new page
-    const newPage = pdfDoc.addPage([600, 400]);
-    newPage.drawText('Added by pdf-lib', {
-        x: 100,
-        y: 300,
-        size: 16
-    });
-
-    // Save modified PDF
-    const pdfBytes = await pdfDoc.save();
-    fs.writeFileSync('modified.pdf', pdfBytes);
-}
-```
-
-#### Create Complex PDFs from Scratch
-```javascript
-import { PDFDocument, rgb, StandardFonts } from 'pdf-lib';
-import fs from 'fs';
-
-async function createPDF() {
-    const pdfDoc = await PDFDocument.create();
-
-    // Add fonts
-    const helveticaFont = await pdfDoc.embedFont(StandardFonts.Helvetica);
-    const helveticaBold = await pdfDoc.embedFont(StandardFonts.HelveticaBold);
-
-    // Add page
-    const page = pdfDoc.addPage([595, 842]); // A4 size
-    const { width, height } = page.getSize();
-
-    // Add text with styling
-    page.drawText('Invoice #12345', {
-        x: 50,
-        y: height - 50,
-        size: 18,
-        font: helveticaBold,
-        color: rgb(0.2, 0.2, 0.8)
-    });
-
-    // Add rectangle (header background)
-    page.drawRectangle({
-        x: 40,
-        y: height - 100,
-        width: width - 80,
-        height: 30,
-        color: rgb(0.9, 0.9, 0.9)
-    });
-
-    // Add table-like content
-    const items = [
-        ['Item', 'Qty', 'Price', 'Total'],
-        ['Widget', '2', '$50', '$100'],
-        ['Gadget', '1', '$75', '$75']
-    ];
-
-    let yPos = height - 150;
-    items.forEach(row => {
-        let xPos = 50;
-        row.forEach(cell => {
-            page.drawText(cell, {
-                x: xPos,
-                y: yPos,
-                size: 12,
-                font: helveticaFont
-            });
-            xPos += 120;
-        });
-        yPos -= 25;
-    });
-
-    const pdfBytes = await pdfDoc.save();
-    fs.writeFileSync('created.pdf', pdfBytes);
-}
-```
-
-#### Advanced Merge and Split Operations
-```javascript
-import { PDFDocument } from 'pdf-lib';
-import fs from 'fs';
-
-async function mergePDFs() {
-    // Create new document
-    const mergedPdf = await PDFDocument.create();
-
-    // Load source PDFs
-    const pdf1Bytes = fs.readFileSync('doc1.pdf');
-    const pdf2Bytes = fs.readFileSync('doc2.pdf');
-
-    const pdf1 = await PDFDocument.load(pdf1Bytes);
-    const pdf2 = await PDFDocument.load(pdf2Bytes);
-
-    // Copy pages from first PDF
-    const pdf1Pages = await mergedPdf.copyPages(pdf1, pdf1.getPageIndices());
-    pdf1Pages.forEach(page => mergedPdf.addPage(page));
-
-    // Copy specific pages from second PDF (pages 0, 2, 4)
-    const pdf2Pages = await mergedPdf.copyPages(pdf2, [0, 2, 4]);
-    pdf2Pages.forEach(page => mergedPdf.addPage(page));
-
-    const mergedPdfBytes = await mergedPdf.save();
-    fs.writeFileSync('merged.pdf', mergedPdfBytes);
-}
-```
-
-### pdfjs-dist (Apache License)
-
-PDF.js is Mozilla's JavaScript library for rendering PDFs in the browser.
-
-#### Basic PDF Loading and Rendering
-```javascript
-import * as pdfjsLib from 'pdfjs-dist';
-
-// Configure worker (important for performance)
-pdfjsLib.GlobalWorkerOptions.workerSrc = './pdf.worker.js';
-
-async function renderPDF() {
-    // Load PDF
-    const loadingTask = pdfjsLib.getDocument('document.pdf');
-    const pdf = await loadingTask.promise;
-
-    console.log(`Loaded PDF with ${pdf.numPages} pages`);
-
-    // Get first page
-    const page = await pdf.getPage(1);
-    const viewport = page.getViewport({ scale: 1.5 });
-
-    // Render to canvas
-    const canvas = document.createElement('canvas');
-    const context = canvas.getContext('2d');
-    canvas.height = viewport.height;
-    canvas.width = viewport.width;
-
-    const renderContext = {
-        canvasContext: context,
-        viewport: viewport
-    };
-
-    await page.render(renderContext).promise;
-    document.body.appendChild(canvas);
-}
-```
-
-#### Extract Text with Coordinates
-```javascript
-import * as pdfjsLib from 'pdfjs-dist';
-
-async function extractText() {
-    const loadingTask = pdfjsLib.getDocument('document.pdf');
-    const pdf = await loadingTask.promise;
-
-    let fullText = '';
-
-    // Extract text from all pages
-    for (let i = 1; i <= pdf.numPages; i++) {
-        const page = await pdf.getPage(i);
-        const textContent = await page.getTextContent();
-
-        const pageText = textContent.items
-            .map(item => item.str)
-            .join(' ');
-
-        fullText += `\n--- Page ${i} ---\n${pageText}`;
-
-        // Get text with coordinates for advanced processing
-        const textWithCoords = textContent.items.map(item => ({
-            text: item.str,
-            x: item.transform[4],
-            y: item.transform[5],
-            width: item.width,
-            height: item.height
-        }));
-    }
-
-    console.log(fullText);
-    return fullText;
-}
-```
-
-#### Extract Annotations and Forms
-```javascript
-import * as pdfjsLib from 'pdfjs-dist';
-
-async function extractAnnotations() {
-    const loadingTask = pdfjsLib.getDocument('annotated.pdf');
-    const pdf = await loadingTask.promise;
-
-    for (let i = 1; i <= pdf.numPages; i++) {
-        const page = await pdf.getPage(i);
-        const annotations = await page.getAnnotations();
-
-        annotations.forEach(annotation => {
-            console.log(`Annotation type: ${annotation.subtype}`);
-            console.log(`Content: ${annotation.contents}`);
-            console.log(`Coordinates: ${JSON.stringify(annotation.rect)}`);
-        });
-    }
-}
-```
-
-## Advanced Command-Line Operations
-
-### poppler-utils Advanced Features
-
-#### Extract Text with Bounding Box Coordinates
-```bash
-# Extract text with bounding box coordinates (essential for structured data)
-pdftotext -bbox-layout document.pdf output.xml
-
-# The XML output contains precise coordinates for each text element
-```
-
-#### Advanced Image Conversion
-```bash
-# Convert to PNG images with specific resolution
-pdftoppm -png -r 300 document.pdf output_prefix
-
-# Convert specific page range with high resolution
-pdftoppm -png -r 600 -f 1 -l 3 document.pdf high_res_pages
-
-# Convert to JPEG with quality setting
-pdftoppm -jpeg -jpegopt quality=85 -r 200 document.pdf jpeg_output
-```
-
-#### Extract Embedded Images
-```bash
-# Extract all embedded images with metadata
-pdfimages -j -p document.pdf page_images
-
-# List image info without extracting
-pdfimages -list document.pdf
-
-# Extract images in their original format
-pdfimages -all document.pdf images/img
-```
-
-### qpdf Advanced Features
-
-#### Complex Page Manipulation
-```bash
-# Split PDF into groups of pages
-qpdf --split-pages=3 input.pdf output_group_%02d.pdf
-
-# Extract specific pages with complex ranges
-qpdf input.pdf --pages input.pdf 1,3-5,8,10-end -- extracted.pdf
-
-# Merge specific pages from multiple PDFs
-qpdf --empty --pages doc1.pdf 1-3 doc2.pdf 5-7 doc3.pdf 2,4 -- combined.pdf
-```
-
-#### PDF Optimization and Repair
-```bash
-# Optimize PDF for web (linearize for streaming)
-qpdf --linearize input.pdf optimized.pdf
-
-# Remove unused objects and compress
-qpdf --optimize-level=all input.pdf compressed.pdf
-
-# Attempt to repair corrupted PDF structure
-qpdf --check input.pdf
-qpdf --fix-qdf damaged.pdf repaired.pdf
-
-# Show detailed PDF structure for debugging
-qpdf --show-all-pages input.pdf > structure.txt
-```
-
-#### Advanced Encryption
-```bash
-# Add password protection with specific permissions
-qpdf --encrypt user_pass owner_pass 256 --print=none --modify=none -- input.pdf encrypted.pdf
-
-# Check encryption status
-qpdf --show-encryption encrypted.pdf
-
-# Remove password protection (requires password)
-qpdf --password=secret123 --decrypt encrypted.pdf decrypted.pdf
-```
-
-## Advanced Python Techniques
-
-### pdfplumber Advanced Features
-
-#### Extract Text with Precise Coordinates
-```python
-import pdfplumber
-
-with pdfplumber.open("document.pdf") as pdf:
-    page = pdf.pages[0]
-    
-    # Extract all text with coordinates
-    chars = page.chars
-    for char in chars[:10]:  # First 10 characters
-        print(f"Char: '{char['text']}' at x:{char['x0']:.1f} y:{char['y0']:.1f}")
-    
-    # Extract text by bounding box (left, top, right, bottom)
-    bbox_text = page.within_bbox((100, 100, 400, 200)).extract_text()
-```
-
-#### Advanced Table Extraction with Custom Settings
-```python
-import pdfplumber
-import pandas as pd
-
-with pdfplumber.open("complex_table.pdf") as pdf:
-    page = pdf.pages[0]
-    
-    # Extract tables with custom settings for complex layouts
-    table_settings = {
-        "vertical_strategy": "lines",
-        "horizontal_strategy": "lines",
-        "snap_tolerance": 3,
-        "intersection_tolerance": 15
-    }
-    tables = page.extract_tables(table_settings)
-    
-    # Visual debugging for table extraction
-    img = page.to_image(resolution=150)
-    img.save("debug_layout.png")
-```
-
-### reportlab Advanced Features
-
-#### Create Professional Reports with Tables
-```python
-from reportlab.platypus import SimpleDocTemplate, Table, TableStyle, Paragraph
-from reportlab.lib.styles import getSampleStyleSheet
-from reportlab.lib import colors
-
-# Sample data
-data = [
-    ['Product', 'Q1', 'Q2', 'Q3', 'Q4'],
-    ['Widgets', '120', '135', '142', '158'],
-    ['Gadgets', '85', '92', '98', '105']
-]
-
-# Create PDF with table
-doc = SimpleDocTemplate("report.pdf")
-elements = []
-
-# Add title
-styles = getSampleStyleSheet()
-title = Paragraph("Quarterly Sales Report", styles['Title'])
-elements.append(title)
-
-# Add table with advanced styling
-table = Table(data)
-table.setStyle(TableStyle([
-    ('BACKGROUND', (0, 0), (-1, 0), colors.grey),
-    ('TEXTCOLOR', (0, 0), (-1, 0), colors.whitesmoke),
-    ('ALIGN', (0, 0), (-1, -1), 'CENTER'),
-    ('FONTNAME', (0, 0), (-1, 0), 'Helvetica-Bold'),
-    ('FONTSIZE', (0, 0), (-1, 0), 14),
-    ('BOTTOMPADDING', (0, 0), (-1, 0), 12),
-    ('BACKGROUND', (0, 1), (-1, -1), colors.beige),
-    ('GRID', (0, 0), (-1, -1), 1, colors.black)
-]))
-elements.append(table)
-
-doc.build(elements)
-```
-
-## Complex Workflows
-
-### Extract Figures/Images from PDF
-
-#### Method 1: Using pdfimages (fastest)
-```bash
-# Extract all images with original quality
-pdfimages -all document.pdf images/img
-```
-
-#### Method 2: Using pypdfium2 + Image Processing
-```python
-import pypdfium2 as pdfium
-from PIL import Image
-import numpy as np
-
-def extract_figures(pdf_path, output_dir):
-    pdf = pdfium.PdfDocument(pdf_path)
-    
-    for page_num, page in enumerate(pdf):
-        # Render high-resolution page
-        bitmap = page.render(scale=3.0)
-        img = bitmap.to_pil()
-        
-        # Convert to numpy for processing
-        img_array = np.array(img)
-        
-        # Simple figure detection (non-white regions)
-        mask = np.any(img_array != [255, 255, 255], axis=2)
-        
-        # Find contours and extract bounding boxes
-        # (This is simplified - real implementation would need more sophisticated detection)
-        
-        # Save detected figures
-        # ... implementation depends on specific needs
-```
-
-### Batch PDF Processing with Error Handling
-```python
-import os
-import glob
-from pypdf import PdfReader, PdfWriter
-import logging
-
-logging.basicConfig(level=logging.INFO)
-logger = logging.getLogger(__name__)
-
-def batch_process_pdfs(input_dir, operation='merge'):
-    pdf_files = glob.glob(os.path.join(input_dir, "*.pdf"))
-    
-    if operation == 'merge':
-        writer = PdfWriter()
-        for pdf_file in pdf_files:
-            try:
-                reader = PdfReader(pdf_file)
-                for page in reader.pages:
-                    writer.add_page(page)
-                logger.info(f"Processed: {pdf_file}")
-            except Exception as e:
-                logger.error(f"Failed to process {pdf_file}: {e}")
-                continue
-        
-        with open("batch_merged.pdf", "wb") as output:
-            writer.write(output)
-    
-    elif operation == 'extract_text':
-        for pdf_file in pdf_files:
-            try:
-                reader = PdfReader(pdf_file)
-                text = ""
-                for page in reader.pages:
-                    text += page.extract_text()
-                
-                output_file = pdf_file.replace('.pdf', '.txt')
-                with open(output_file, 'w', encoding='utf-8') as f:
-                    f.write(text)
-                logger.info(f"Extracted text from: {pdf_file}")
-                
-            except Exception as e:
-                logger.error(f"Failed to extract text from {pdf_file}: {e}")
-                continue
-```
-
-### Advanced PDF Cropping
-```python
-from pypdf import PdfWriter, PdfReader
-
-reader = PdfReader("input.pdf")
-writer = PdfWriter()
-
-# Crop page (left, bottom, right, top in points)
-page = reader.pages[0]
-page.mediabox.left = 50
-page.mediabox.bottom = 50
-page.mediabox.right = 550
-page.mediabox.top = 750
-
-writer.add_page(page)
-with open("cropped.pdf", "wb") as output:
-    writer.write(output)
-```
-
-## Performance Optimization Tips
-
-### 1. For Large PDFs
-- Use streaming approaches instead of loading entire PDF in memory
-- Use `qpdf --split-pages` for splitting large files
-- Process pages individually with pypdfium2
-
-### 2. For Text Extraction
-- `pdftotext -bbox-layout` is fastest for plain text extraction
-- Use pdfplumber for structured data and tables
-- Avoid `pypdf.extract_text()` for very large documents
-
-### 3. For Image Extraction
-- `pdfimages` is much faster than rendering pages
-- Use low resolution for previews, high resolution for final output
-
-### 4. For Form Filling
-- pdf-lib maintains form structure better than most alternatives
-- Pre-validate form fields before processing
-
-### 5. Memory Management
-```python
-# Process PDFs in chunks
-def process_large_pdf(pdf_path, chunk_size=10):
-    reader = PdfReader(pdf_path)
-    total_pages = len(reader.pages)
-    
-    for start_idx in range(0, total_pages, chunk_size):
-        end_idx = min(start_idx + chunk_size, total_pages)
-        writer = PdfWriter()
-        
-        for i in range(start_idx, end_idx):
-            writer.add_page(reader.pages[i])
-        
-        # Process chunk
-        with open(f"chunk_{start_idx//chunk_size}.pdf", "wb") as output:
-            writer.write(output)
-```
-
-## Troubleshooting Common Issues
-
-### Encrypted PDFs
-```python
-# Handle password-protected PDFs
-from pypdf import PdfReader
-
-try:
-    reader = PdfReader("encrypted.pdf")
-    if reader.is_encrypted:
-        reader.decrypt("password")
-except Exception as e:
-    print(f"Failed to decrypt: {e}")
-```
-
-### Corrupted PDFs
-```bash
-# Use qpdf to repair
-qpdf --check corrupted.pdf
-qpdf --replace-input corrupted.pdf
-```
-
-### Text Extraction Issues
-```python
-# Fallback to OCR for scanned PDFs
-import pytesseract
-from pdf2image import convert_from_path
-
-def extract_text_with_ocr(pdf_path):
-    images = convert_from_path(pdf_path)
-    text = ""
-    for i, image in enumerate(images):
-        text += pytesseract.image_to_string(image)
-    return text
-```
-
-## License Information
-
-- **pypdf**: BSD License
-- **pdfplumber**: MIT License
-- **pypdfium2**: Apache/BSD License
-- **reportlab**: BSD License
-- **poppler-utils**: GPL-2 License
-- **qpdf**: Apache License
-- **pdf-lib**: MIT License
-- **pdfjs-dist**: Apache License

package/.agents/skills/pdf/scripts/check_bounding_boxes.py

@@ -1,65 +0,0 @@
-from dataclasses import dataclass
-import json
-import sys
-
-
-
-
-@dataclass
-class RectAndField:
-    rect: list[float]
-    rect_type: str
-    field: dict
-
-
-def get_bounding_box_messages(fields_json_stream) -> list[str]:
-    messages = []
-    fields = json.load(fields_json_stream)
-    messages.append(f"Read {len(fields['form_fields'])} fields")
-
-    def rects_intersect(r1, r2):
-        disjoint_horizontal = r1[0] >= r2[2] or r1[2] <= r2[0]
-        disjoint_vertical = r1[1] >= r2[3] or r1[3] <= r2[1]
-        return not (disjoint_horizontal or disjoint_vertical)
-
-    rects_and_fields = []
-    for f in fields["form_fields"]:
-        rects_and_fields.append(RectAndField(f["label_bounding_box"], "label", f))
-        rects_and_fields.append(RectAndField(f["entry_bounding_box"], "entry", f))
-
-    has_error = False
-    for i, ri in enumerate(rects_and_fields):
-        for j in range(i + 1, len(rects_and_fields)):
-            rj = rects_and_fields[j]
-            if ri.field["page_number"] == rj.field["page_number"] and rects_intersect(ri.rect, rj.rect):
-                has_error = True
-                if ri.field is rj.field:
-                    messages.append(f"FAILURE: intersection between label and entry bounding boxes for `{ri.field['description']}` ({ri.rect}, {rj.rect})")
-                else:
-                    messages.append(f"FAILURE: intersection between {ri.rect_type} bounding box for `{ri.field['description']}` ({ri.rect}) and {rj.rect_type} bounding box for `{rj.field['description']}` ({rj.rect})")
-                if len(messages) >= 20:
-                    messages.append("Aborting further checks; fix bounding boxes and try again")
-                    return messages
-        if ri.rect_type == "entry":
-            if "entry_text" in ri.field:
-                font_size = ri.field["entry_text"].get("font_size", 14)
-                entry_height = ri.rect[3] - ri.rect[1]
-                if entry_height < font_size:
-                    has_error = True
-                    messages.append(f"FAILURE: entry bounding box height ({entry_height}) for `{ri.field['description']}` is too short for the text content (font size: {font_size}). Increase the box height or decrease the font size.")
-                    if len(messages) >= 20:
-                        messages.append("Aborting further checks; fix bounding boxes and try again")
-                        return messages
-
-    if not has_error:
-        messages.append("SUCCESS: All bounding boxes are valid")
-    return messages
-
-if __name__ == "__main__":
-    if len(sys.argv) != 2:
-        print("Usage: check_bounding_boxes.py [fields.json]")
-        sys.exit(1)
-    with open(sys.argv[1]) as f:
-        messages = get_bounding_box_messages(f)
-    for msg in messages:
-        print(msg)

package/.agents/skills/pdf/scripts/check_fillable_fields.py

@@ -1,11 +0,0 @@
-import sys
-from pypdf import PdfReader
-
-
-
-
-reader = PdfReader(sys.argv[1])
-if (reader.get_fields()):
-    print("This PDF has fillable form fields")
-else:
-    print("This PDF does not have fillable form fields; you will need to visually determine where to enter data")