npm - @bastani/atomic - Versions diffs - 0.6.5 → 0.6.6-0 - Mend

@bastani/atomic 0.6.5 → 0.6.6-0

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package/.agents/skills/workflow-creator/SKILL.md CHANGED Viewed

@@ -1,6 +1,8 @@
 ---
 name: workflow-creator
 description: Create AND run Atomic CLI workflows (`defineWorkflow().run().compile()` with `ctx.stage()`) across Claude, Copilot, and OpenCode SDKs. Use for **authoring** when the user wants to build, edit, debug, or design agent pipelines — multi-stage automations, review/fix loops, parallel fan-out, headless/background stages, `defineWorkflow`, `ctx.stage`, `ctx.inputs`, declared `WorkflowInput` schemas, `runWorkflow`, `createRegistry`, `listWorkflows`, the SDK's metadata accessors (`getName`, `getInputSchema`, `getAgent`), `validateInputs`, the interactive workflow picker (`WorkflowPicker` from `@bastani/atomic/workflows/components`), single or multi-workflow composition roots. Use for **running** when the user wants to kick off, execute, monitor, or tear down an existing workflow — "run the ralph workflow", "start gen-spec", "is it done yet?", "what's the status?", "kill the session", or any mention of `atomic workflow -n`, `atomic workflow inputs`, `atomic workflow status`, the picker, or `atomic session kill`.
+metadata:
+  provider: atomic
 ---
 # Workflow Creator
@@ -18,20 +20,20 @@ Two user journeys live in this skill:
 Load references on demand. **Only `getting-started.md` is always-load.** Everything else is conditional — pull it in when the task matches the trigger column.
-| File | Load when |
-|---|---|
-| `getting-started.md` | **Always** — quick-start examples for all 3 SDKs, SDK exports, `SessionContext` field reference |
-| `agent-setup-recipe.md` | When the user is starting from zero (empty terminal, no project, "set me up", "how do I get started"). Deterministic env-detect → install → scaffold → smoke-test playbook with typed-error recovery hints |
-| `failure-modes.md` | Before shipping any multi-session workflow. 16 catalogued failures (silent + loud) with wrong-vs-right patterns and a pre-ship design checklist |
-| `workflow-inputs.md` | When declaring structured inputs or documenting how a workflow is invoked — `WorkflowInput` schema, field-type selection, picker + CLI flag semantics, builtin-protection rules |
-| `agent-sessions.md` | When writing SDK calls — `s.session.query()` (Claude), `s.session.send()` (Copilot), `s.client.session.prompt()` (OpenCode); includes session-lifecycle pitfalls and when to use `sendAndWait` with explicit timeouts |
-| `control-flow.md` | When using loops, conditionals, parallel execution (`Promise.all`), headless fan-out, or review/fix patterns |
-| `state-and-data-flow.md` | When passing data between sessions — `s.save()`, `s.transcript()`, `s.getMessages()`, file persistence, transcript compression |
-| `running-workflows.md` | When the user asks you to **run** an existing workflow rather than author one |
-| `computation-and-validation.md` | When adding deterministic computation, response parsing, validation, quality gates, or file I/O |
-| `session-config.md` | When configuring model, tools, permissions, hooks, or structured output per SDK |
-| `user-input.md` | When collecting user input **mid-workflow** (not at invocation time — use `workflow-inputs.md` for that) |
-| `registry-and-validation.md` | When setting up `createRegistry()` and iterating it via `listWorkflows`, understanding key scheme, validate-on-register rules, and same-name collision detection (only relevant for the multi-workflow cli) |
+| File                            | Load when                                                                                                                                                                                                             |
+| ------------------------------- | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
+| `getting-started.md`            | **Always** — quick-start examples for all 3 SDKs, SDK exports, `SessionContext` field reference                                                                                                                       |
+| `agent-setup-recipe.md`         | When the user is starting from zero (empty terminal, no project, "set me up", "how do I get started"). Deterministic env-detect → install → scaffold → smoke-test playbook with typed-error recovery hints            |
+| `failure-modes.md`              | Before shipping any multi-session workflow. 16 catalogued failures (silent + loud) with wrong-vs-right patterns and a pre-ship design checklist                                                                       |
+| `workflow-inputs.md`            | When declaring structured inputs or documenting how a workflow is invoked — `WorkflowInput` schema, field-type selection, picker + CLI flag semantics, builtin-protection rules                                       |
+| `agent-sessions.md`             | When writing SDK calls — `s.session.query()` (Claude), `s.session.send()` (Copilot), `s.client.session.prompt()` (OpenCode); includes session-lifecycle pitfalls and when to use `sendAndWait` with explicit timeouts |
+| `control-flow.md`               | When using loops, conditionals, parallel execution (`Promise.all`), headless fan-out, or review/fix patterns                                                                                                          |
+| `state-and-data-flow.md`        | When passing data between sessions — `s.save()`, `s.transcript()`, `s.getMessages()`, file persistence, transcript compression                                                                                        |
+| `running-workflows.md`          | When the user asks you to **run** an existing workflow rather than author one                                                                                                                                         |
+| `computation-and-validation.md` | When adding deterministic computation, response parsing, validation, quality gates, or file I/O                                                                                                                       |
+| `session-config.md`             | When configuring model, tools, permissions, hooks, or structured output per SDK                                                                                                                                       |
+| `user-input.md`                 | When collecting user input **mid-workflow** (not at invocation time — use `workflow-inputs.md` for that)                                                                                                              |
+| `registry-and-validation.md`    | When setting up `createRegistry()` and iterating it via `listWorkflows`, understanding key scheme, validate-on-register rules, and same-name collision detection (only relevant for the multi-workflow cli)           |
 ## Scaffold a new workflow from scratch
@@ -102,22 +104,22 @@ budgets). Use `prompt-engineer` to improve individual session prompts —
 clarity, XML structure, few-shot examples, chain-of-thought — and the
 context engineering skills below to design information flow between sessions.
-| Design Concern | Skill | Trigger |
-|---|---|---|
-| Prompt clarity and structure | `prompt-engineer` | Every workflow — clear instructions, XML tags, examples, chain-of-thought |
-| Session prompt structure | `context-fundamentals` | Every workflow — token budgeting, prompt positioning, progressive disclosure |
-| Context failure prevention | `context-degradation` | Long conversations, accumulated state, multi-turn loops |
-| Transcript compression | `context-compression` | Passing large transcripts between sessions |
-| Multi-session architecture | `multi-agent-patterns` | Coordination topology, handoff protocols, error propagation |
-| Cross-run persistence | `memory-systems` | Retaining knowledge across separate executions |
-| Custom tools and capabilities | `tool-design` | Sessions exposing custom tools |
-| File-based coordination | `filesystem-context` | Sessions sharing state via files |
-| Remote execution | `hosted-agents` | Sandboxed or remote environments |
-| Token efficiency | `context-optimization` | Compaction triggers, observation masking, cache-friendly ordering |
-| Quality gates | `evaluation` | Review loops or quality checkpoints |
-| LLM-as-judge review | `advanced-evaluation` | Automated review sessions judging other sessions' output |
-| Task-model fit | `project-development` | Validating whether a task is viable for agent automation |
-| Deliberative reasoning | `bdi-mental-states` | Explainable reasoning chains or formal cognitive models |
+| Design Concern                | Skill                  | Trigger                                                                      |
+| ----------------------------- | ---------------------- | ---------------------------------------------------------------------------- |
+| Prompt clarity and structure  | `prompt-engineer`      | Every workflow — clear instructions, XML tags, examples, chain-of-thought    |
+| Session prompt structure      | `context-fundamentals` | Every workflow — token budgeting, prompt positioning, progressive disclosure |
+| Context failure prevention    | `context-degradation`  | Long conversations, accumulated state, multi-turn loops                      |
+| Transcript compression        | `context-compression`  | Passing large transcripts between sessions                                   |
+| Multi-session architecture    | `multi-agent-patterns` | Coordination topology, handoff protocols, error propagation                  |
+| Cross-run persistence         | `memory-systems`       | Retaining knowledge across separate executions                               |
+| Custom tools and capabilities | `tool-design`          | Sessions exposing custom tools                                               |
+| File-based coordination       | `filesystem-context`   | Sessions sharing state via files                                             |
+| Remote execution              | `hosted-agents`        | Sandboxed or remote environments                                             |
+| Token efficiency              | `context-optimization` | Compaction triggers, observation masking, cache-friendly ordering            |
+| Quality gates                 | `evaluation`           | Review loops or quality checkpoints                                          |
+| LLM-as-judge review           | `advanced-evaluation`  | Automated review sessions judging other sessions' output                     |
+| Task-model fit                | `project-development`  | Validating whether a task is viable for agent automation                     |
+| Deliberative reasoning        | `bdi-mental-states`    | Explainable reasoning chains or formal cognitive models                      |
 ## How Workflows Work
@@ -290,18 +292,18 @@ The dev's CLI is **never** re-execed. The SDK ships an internal orchestrator ent
 atomic workflow -n <name> -a <agent> [inputs...]
 ```
-Surface | Command | When
----|---|---
-Named, with prompt | `… -n hello -a claude "fix the bug"` | Requires workflow to declare a `prompt` input
-Named, structured | `… -n gen-spec -a claude --research_doc=notes.md` | Structured inputs via `--<field>` flags
-Interactive picker | `atomic workflow -a claude` | Discovery — fuzzy list + form; this is the intentional no-`-n` path
-List (atomic builtins) | `atomic workflow list`, `atomic workflow list -a <agent>` | Browse registered builtins, optionally filtered
-List (user cli) | Iterate `listWorkflows(registry)` and add a `list` Commander subcommand yourself | No built-in `--list` flag
-List (single-workflow) | Not applicable — the file *is* the workflow
-Inspect inputs | `atomic workflow inputs <name> -a claude` | Print input schema as JSON
-Status (one or all) | `atomic workflow status [<session-id>]` | Query state — `in_progress`, `error`, `completed`, `needs_review`
-Kill non-interactively | `atomic session kill <id> -y` | Tear down without confirmation prompt — `-y` is mandatory for agents
-Detached (background) | `… -d` / `… --detach` | Runs without attaching; reattach with `atomic workflow session connect <name>`
+| Surface                | Command                                                                          | When                                                                           |
+| ---------------------- | -------------------------------------------------------------------------------- | ------------------------------------------------------------------------------ |
+| Named, with prompt     | `… -n hello -a claude "fix the bug"`                                             | Requires workflow to declare a `prompt` input                                  |
+| Named, structured      | `… -n gen-spec -a claude --research_doc=notes.md`                                | Structured inputs via `--<field>` flags                                        |
+| Interactive picker     | `atomic workflow -a claude`                                                      | Discovery — fuzzy list + form; this is the intentional no-`-n` path            |
+| List (atomic builtins) | `atomic workflow list`, `atomic workflow list -a <agent>`                        | Browse registered builtins, optionally filtered                                |
+| List (user cli)        | Iterate `listWorkflows(registry)` and add a `list` Commander subcommand yourself | No built-in `--list` flag                                                      |
+| List (single-workflow) | Not applicable — the file *is* the workflow                                      |
+| Inspect inputs         | `atomic workflow inputs <name> -a claude`                                        | Print input schema as JSON                                                     |
+| Status (one or all)    | `atomic workflow status [<session-id>]`                                          | Query state — `in_progress`, `error`, `completed`, `needs_review`              |
+| Kill non-interactively | `atomic session kill <id> -y`                                                    | Tear down without confirmation prompt — `-y` is mandatory for agents           |
+| Detached (background)  | `… -d` / `… --detach`                                                            | Runs without attaching; reattach with `atomic workflow session connect <name>` |
 Any of the named shapes above (positional or structured) accepts
 `-d` / `--detach` to run without attaching. Use it when you're automating
@@ -347,21 +349,22 @@ Enforced by the builder, loader, and runtime:
 Every workflow pattern maps directly to TypeScript code:
-| Workflow Concept | Programmatic Pattern |
-|---|---|
-| Agent session (send prompt, get response) | `ctx.stage({ name }, {}, {}, async (s) => { /* use s.client, s.session */ })` — **must** include an LLM call (Rule 9) |
-| Background (headless) session | `ctx.stage({ name, headless: true }, {}, {}, async (s) => { /* same API */ })` — invisible in graph, tracked by background counter |
-| Sequential execution | `await ctx.stage(...)` followed by `await ctx.stage(...)` |
-| Parallel execution | `Promise.all([ctx.stage(...), ctx.stage(...)])` |
-| Parallel background tasks | `Promise.all([ctx.stage({ name: "a", headless: true }, ...), ctx.stage({ name: "b", headless: true }, ...)])` |
-| Conditional branching | `if (...) { await ctx.stage({ name: "fix" }, {}, {}, ...) }` |
-| Bounded loops with visible graph nodes | `for (let i = 1; i <= N; i++) { await ctx.stage({ name: \`step-\${i}\` }, {}, {}, ...) }` |
-| Return data from session | `const h = await ctx.stage(opts, {}, {}, async (s) => { return value; }); h.result` |
-| Data flow between sessions | `s.save()` to persist → `s.transcript(handle)` or `s.transcript("name")` to retrieve |
-| Pure deterministic computation (no LLM call) | Plain TypeScript at the top level of `.run()`. **Never** a standalone stage — see Rule 9 and F22. |
-| Deterministic work tied to an LLM call | Inside the same stage callback, before/after the query. E.g. `s.session.query(...)` → parse → validate → `s.save(parsed)`. |
-| Subagent orchestration | Claude: `--agent` via `chatFlags` (interactive) or `agent` SDK option (headless); Copilot: `{ agent: "name" }` in sessionOpts; OpenCode: `agent` param in `s.client.session.prompt()` |
-| Per-session configuration | Pass `clientOpts` (2nd arg) and `sessionOpts` (3rd arg) to `ctx.stage()` |
+| Workflow Concept                             | Programmatic Pattern                                                                                                                                                                  |
+| -------------------------------------------- | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
+| Agent session (send prompt, get response)    | `ctx.stage({ name }, {}, {}, async (s) => { /* use s.client, s.session */ })` — **must** include an LLM call (Rule 9)                                                                 |
+| Background (headless) session                | `ctx.stage({ name, headless: true }, {}, {}, async (s) => { /* same API */ })` — invisible in graph, tracked by background counter                                                    |
+| Sequential execution                         | `await ctx.stage(...)` followed by `await ctx.stage(...)`                                                                                                                             |
+| Parallel execution                           | `Promise.all([ctx.stage(...), ctx.stage(...)])`                                                                                                                                       |
+| Parallel background tasks                    | `Promise.all([ctx.stage({ name: "a", headless: true }, ...), ctx.stage({ name: "b", headless: true }, ...)])`                                                                         |
+| Conditional branching                        | `if (...) { await ctx.stage({ name: "fix" }, {}, {}, ...) }`                                                                                                                          |
+| Bounded loops with visible graph nodes       | `for (let i = 1; i <= N; i++) { await ctx.stage({ name: \`step-\${i}\` }, {}, {}, ...) }`                                                                                             |
+| Return data from session                     | `const h = await ctx.stage(opts, {}, {}, async (s) => { return value; }); h.result`                                                                                                   |
+| Data flow between sessions                   | `s.save()` to persist → `s.transcript(handle)` or `s.transcript("name")` to retrieve                                                                                                  |
+| Pure deterministic computation (no LLM call) | Plain TypeScript at the top level of `.run()`. **Never** a standalone stage — see Rule 9 and F22.                                                                                     |
+| Deterministic work tied to an LLM call       | Inside the same stage callback, before/after the query. E.g. `s.session.query(...)` → parse → validate → `s.save(parsed)`.                                                            |
+| Subagent orchestration                       | Claude: `--agent` via `chatFlags` (interactive) or `agent` SDK option (headless); Copilot: `{ agent: "name" }` in sessionOpts; OpenCode: `agent` param in `s.client.session.prompt()` |
+| Per-session configuration                    | Pass `clientOpts` (2nd arg) and `sessionOpts` (3rd arg) to `ctx.stage()`                                                                                                              |
+| Per-session permission posture (autonomous)  | Claude: `chatFlags: ["--dangerously-skip-permissions"]` (interactive) or `permissionMode: "bypassPermissions"` on `s.session.query()` (headless). Copilot: `onPermissionRequest: approveAll` (default — auto-applied). OpenCode: pass `permission: [{ permission: "*", pattern: "*", action: "allow" }]` in `sessionOpts` on **every stage** so the posture is visible in the workflow source, not buried in runtime defaults. See `references/session-config.md` §"OpenCode session permission ruleset". |
 ### When to use a stage vs. plain TypeScript
@@ -409,17 +412,17 @@ transcript compression), and `references/computation-and-validation.md`
 Map the user's intent to sessions and patterns:
-| Question | Maps to |
-|----------|---------|
-| What are the distinct **LLM interactions**? | Each LLM conversation → one `ctx.stage()` call (Rule 9) |
-| Can any LLM calls run in parallel? | `Promise.all([ctx.stage(...), ...])` |
-| Should any parallel LLM calls run in the background? | `ctx.stage({ name, headless: true }, ...)` — invisible in graph, ideal for data-gathering |
+| Question                                                 | Maps to                                                                                                                                                       |
+| -------------------------------------------------------- | ------------------------------------------------------------------------------------------------------------------------------------------------------------- |
+| What are the distinct **LLM interactions**?              | Each LLM conversation → one `ctx.stage()` call (Rule 9)                                                                                                       |
+| Can any LLM calls run in parallel?                       | `Promise.all([ctx.stage(...), ...])`                                                                                                                          |
+| Should any parallel LLM calls run in the background?     | `ctx.stage({ name, headless: true }, ...)` — invisible in graph, ideal for data-gathering                                                                     |
 | Does any step need **pure deterministic code** (no LLM)? | Plain TypeScript at the top of `.run()` — **not** a dedicated stage. Bundle it inside the nearest stage callback if it's directly tied to that stage's query. |
-| Do any steps need to repeat? | `for`/`while` loop with `ctx.stage()` inside |
-| Are there conditional paths? | `if`/`else` wrapping `ctx.stage()` calls |
-| What data flows between steps? | `s.save()` → `s.transcript(handle)` / `s.getMessages(handle)` |
-| Does the workflow need user input? | SDK-specific user input APIs (see `references/user-input.md`) |
-| Do any steps need a specific model? | SDK-specific session config (see `references/session-config.md`) |
+| Do any steps need to repeat?                             | `for`/`while` loop with `ctx.stage()` inside                                                                                                                  |
+| Are there conditional paths?                             | `if`/`else` wrapping `ctx.stage()` calls                                                                                                                      |
+| What data flows between steps?                           | `s.save()` → `s.transcript(handle)` / `s.getMessages(handle)`                                                                                                 |
+| Does the workflow need user input?                       | SDK-specific user input APIs (see `references/user-input.md`)                                                                                                 |
+| Do any steps need a specific model?                      | SDK-specific session config (see `references/session-config.md`)                                                                                              |
 Then walk the **Design Advisory Skills** table above (§"Design Advisory
 Skills") — for each row whose trigger applies to your workflow, pull that
@@ -433,11 +436,11 @@ Pass the agent as a runtime argument to `.for()` on the builder — this
 narrows all context types and gives correct `s.client`/`s.session` types.
 Call `.for()` **before** `.run()`:
-| Agent | Builder Chain | Primary Session API |
-|-------|---------------|---------------------|
-| Claude | `defineWorkflow({...}).for("claude")` | `s.session.query(prompt)` — sends prompt to the Claude TUI pane |
-| Copilot | `defineWorkflow({...}).for("copilot")` | `s.session.send({ prompt })` — the runtime wraps `send` to block until `session.idle` with no timeout (see `failure-modes.md` §F10); do not use `sendAndWait` in Atomic workflows |
-| OpenCode | `defineWorkflow({...}).for("opencode")` | `s.client.session.prompt({ sessionID: s.session.id, parts: [...] })` |
+| Agent    | Builder Chain                           | Primary Session API                                                                                                                                                               |
+| -------- | --------------------------------------- | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
+| Claude   | `defineWorkflow({...}).for("claude")`   | `s.session.query(prompt)` — sends prompt to the Claude TUI pane                                                                                                                   |
+| Copilot  | `defineWorkflow({...}).for("copilot")`  | `s.session.send({ prompt })` — the runtime wraps `send` to block until `session.idle` with no timeout (see `failure-modes.md` §F10); do not use `sendAndWait` in Atomic workflows |
+| OpenCode | `defineWorkflow({...}).for("opencode")` | `s.client.session.prompt({ sessionID: s.session.id, parts: [...] })`                                                                                                              |
 The runtime manages client/session lifecycle automatically. For native SDK
 types and advanced APIs, import directly from the provider packages

package/.agents/skills/workflow-creator/references/session-config.md CHANGED Viewed

@@ -289,18 +289,65 @@ await ctx.stage({ name: "..." }, {
 ### Session options (`sessionOpts` — 3rd arg to `ctx.stage()`)
 These are forwarded to `client.session.create()`. Use them to set a title,
-parentID, or workspaceID for the session:
+parentID, workspaceID, or — most importantly — a `permission` ruleset for
+the session:
 ```ts
 await ctx.stage({ name: "..." }, {}, {
   title: "Feature implementation",
   parentID: "parent-session-id",
   workspaceID: "workspace-id",
+  // Recommended default — autonomous stages should approve every tool call.
+  // Mirrors Copilot's `approveAll` and Claude's `bypassPermissions`. Omit
+  // (or narrow) only when a stage must gate specific tools behind HIL.
+  permission: [{ permission: "*", pattern: "*", action: "allow" }],
 }, async (s) => {
   // s.session is the created OpencodeSession, s.session.id is the session ID
 });
 ```
+### OpenCode session permission ruleset (recommended default)
+Every opencode stage in the builtin and example workflows passes
+`permission: [{ permission: "*", pattern: "*", action: "allow" }]`
+explicitly. **Do the same for new opencode workflows.** This is OpenCode's
+equivalent of:
+| Agent    | Autonomous-default knob                                         |
+| -------- | --------------------------------------------------------------- |
+| Claude   | `chatFlags: ["--dangerously-skip-permissions"]` (interactive) / `permissionMode: "bypassPermissions"` (headless `s.session.query()` options) |
+| Copilot  | `onPermissionRequest: approveAll` (defaults on automatically)   |
+| OpenCode | `permission: [{ permission: "*", pattern: "*", action: "allow" }]` (default in the runtime; **set explicitly so workflow authors can see and override per stage**) |
+Why explicit:
+- The runtime applies the same allow-all ruleset as a fallback, but
+  **workflow authors should see the permission decision in the workflow
+  source** — not learn it by reading the executor.
+- A workflow author who needs a stricter ruleset (e.g. deny `bash` on a
+  production machine, ask before `edit` on a sensitive directory) can
+  override the field per stage. The runtime only applies the default when
+  `permission` is `undefined` in the session opts.
+- Mirroring the explicit pattern keeps the three SDK variants visually
+  symmetric — every stage in every agent shows its permission posture in
+  the same place (3rd arg to `ctx.stage()`).
+To narrow per stage, pass any other ruleset shape:
+```ts
+// Deny shell commands in this stage; ask for everything else.
+await ctx.stage({ name: "review" }, {}, {
+  title: "review",
+  permission: [
+    { permission: "bash", pattern: "*", action: "deny" },
+    { permission: "*", pattern: "*", action: "ask" },
+  ],
+}, async (s) => { /* ... */ });
+```
+The full type lives in `@opencode-ai/sdk/v2` as `PermissionRuleset`
+(`Array<{ permission: string; pattern?: string; action: "allow" | "deny" | "ask" }>`).
 ### Session prompting
 Use `s.client` and `s.session.id` inside the callback:

package/.agents/skills/xlsx/SKILL.md CHANGED Viewed

@@ -2,6 +2,8 @@
 name: xlsx
 description: "Use this skill any time a spreadsheet file is the primary input or output. This means any task where the user wants to: open, read, edit, or fix an existing .xlsx, .xlsm, .csv, or .tsv file (e.g., adding columns, computing formulas, formatting, charting, cleaning messy data); create a new spreadsheet from scratch or from other data sources; or convert between tabular file formats. Trigger especially when the user references a spreadsheet file by name or path — even casually (like \"the xlsx in my downloads\") — and wants something done to it or produced from it. Also trigger for cleaning or restructuring messy tabular data files (malformed rows, misplaced headers, junk data) into proper spreadsheets. The deliverable must be a spreadsheet file. Do NOT trigger when the primary deliverable is a Word document, HTML report, standalone Python script, database pipeline, or Google Sheets API integration, even if tabular data is involved."
 license: Proprietary. LICENSE.txt has complete terms
+metadata:
+  provider: atomic
 ---
 # Requirements for Outputs

package/.opencode/opencode.json CHANGED Viewed

@@ -1,6 +1,5 @@
 {
   "$schema": "https://opencode.ai/config.json",
-  "permission": "allow",
   "mcp": {
     "github": {
       "type": "remote",
@@ -17,5 +16,8 @@
       ],
       "enabled": false
     }
-  }
+  },
+  "instructions": [
+    "/home/alilavaee/.atomic/AGENTS.md"
+  ]
 }

package/dist/sdk/runtime/executor.d.ts CHANGED Viewed

@@ -18,6 +18,9 @@
  * re-entry signal and no boilerplate in user code.
  */
 import type { WorkflowDefinition, WorkflowInput, AgentType, SavedMessage, StageClientOptions } from "../types.ts";
+import { type ProviderOverrides } from "../../services/config/definitions.ts";
+/** Maximum time (ms) for the SDK probe to succeed after port is discovered. */
+export declare const SERVER_PROBE_TIMEOUT_MS = 60000;
 export { errorMessage } from "../errors.ts";
 export interface WorkflowRunOptions {
     /** The compiled workflow definition */
@@ -71,6 +74,11 @@ export declare function shouldOverrideCopilotCliPath(): boolean;
  * inherit the resolved env.
  */
 export declare function applyContainerEnvDefaults(): void;
+export declare function buildPaneCommand(agent: AgentType, overrides?: ProviderOverrides, extraChatFlags?: string[]): {
+    command: string;
+    envVars: Record<string, string>;
+};
+export declare function waitForServer(agent: AgentType, paneId: string): Promise<string>;
 /**
  * Escape a string for safe interpolation inside a bash double-quoted string.
  *

package/dist/sdk/runtime/executor.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/sdk/runtime/port-discovery.d.ts ADDED Viewed

@@ -0,0 +1,71 @@
+/**
+ * Cross-platform TCP port discovery for child processes.
+ *
+ * Polls the kernel's per-process socket table until a listening TCP port
+ * is found for the given PID, or until the timeout elapses.
+ *
+ * Platform implementations:
+ *   - Linux: /proc/<pid>/net/tcp + /proc/<pid>/fd/* (no external binary)
+ *   - macOS: lsof -nP -iTCP -sTCP:LISTEN -a -p <pid>
+ *   - Windows: Get-NetTCPConnection PowerShell; falls back to netstat -ano
+ */
+export declare const PORT_DISCOVERY_TIMEOUT_MS = 15000;
+export interface GetListeningPortOptions {
+    timeoutMs?: number;
+    pollIntervalMs?: number;
+}
+type PortDiscoverySpawnOptions = {
+    cmd: string[];
+    stdout: "pipe";
+    stderr: "pipe";
+};
+type PortDiscoverySpawnResult = {
+    stdout: {
+        toString(): string;
+    };
+    stderr: {
+        toString(): string;
+    };
+    success: boolean;
+};
+type PortDiscoverySpawnSync = (options: PortDiscoverySpawnOptions) => PortDiscoverySpawnResult;
+export declare function _setPortDiscoverySpawnSyncForTest(nextSpawnSync: PortDiscoverySpawnSync): () => void;
+/**
+ * Discover the TCP port that a given process is listening on.
+ *
+ * Polls the kernel's per-process socket table at ~500ms intervals until
+ * a listening port is found or the timeout elapses. Returns null on
+ * timeout (caller is responsible for throwing if that's an error).
+ */
+export declare function getListeningPortForPid(pid: number, options?: GetListeningPortOptions): Promise<number | null>;
+export declare function _readListeningPortForPid(pid: number): number | null;
+export declare function _isProcessAlive(pid: number): boolean;
+/**
+ * Parse a single /proc/net/tcp or /proc/net/tcp6 line.
+ * Returns {inode, port} for LISTEN sockets (state 0A), or null otherwise.
+ */
+export declare function _parseLinuxTcpLine(line: string): {
+    inode: number;
+    port: number;
+} | null;
+/** Parse /proc/net/tcp or /proc/net/tcp6 content. Returns map of inode -> port for LISTEN sockets. */
+export declare function _parseLinuxTcpTable(content: string): Map<number, number>;
+/** Get socket inodes owned by a PID via /proc/<pid>/fd/* symlinks. */
+export declare function _getLinuxPidSocketInodes(pid: number): Set<number>;
+export declare function _linuxGetListeningPort(tcpContent: string, tcp6Content: string, socketInodes: Set<number>): number | null;
+export declare function _linuxGetChildren(pid: number): number[];
+/**
+ * Parse lsof tabular output.
+ * Returns the first listening port, preferring loopback/any addresses.
+ */
+export declare function _parseMacosLsofOutput(output: string): number | null;
+export declare function _macosReadListeningPort(pid: number, depth: number): number | null;
+export declare function _macosGetChildren(pid: number): number[];
+/** Parse PowerShell Get-NetTCPConnection JSON output. */
+export declare function _parseWindowsPowerShellOutput(json: string): number | null;
+/** Parse netstat -ano tabular output for a given PID. */
+export declare function _parseWindowsNetstatOutput(output: string, pid: number): number | null;
+export declare function _windowsReadListeningPort(pid: number, depth: number): number | null;
+export declare function _windowsGetChildren(pid: number): number[];
+export {};
+//# sourceMappingURL=port-discovery.d.ts.map

package/dist/sdk/runtime/port-discovery.d.ts.map ADDED Viewed

@@ -0,0 +1 @@

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package/dist/sdk/runtime/tmux.d.ts CHANGED Viewed

@@ -175,6 +175,16 @@ export declare function sessionExists(sessionName: string): boolean;
  */
 export declare function setSessionEnv(sessionName: string, key: string, value: string): void;
 export declare function parseSessionEnvValue(stdout: string, key: string): string | null;
+/**
+ * Get the PID of the foreground process in a tmux pane.
+ * Returns null if the pane no longer exists or the query fails.
+ *
+ * Note: this is the pane's "current" process — typically the agent
+ * itself when the pane was created with the agent as the initial command.
+ * If tmux exec'd a wrapper shell that then exec'd the agent, the PID
+ * will refer to the same process (exec replaces in-place).
+ */
+export declare function getPanePid(paneId: string): number | null;
 /**
  * Read a session-level environment variable.
  * Returns `null` when the session doesn't exist or the variable isn't set.

package/dist/sdk/runtime/tmux.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/sdk/types.d.ts CHANGED Viewed

@@ -36,6 +36,7 @@ type SessionOptionsMap = {
         parentID?: string;
         title?: string;
         workspaceID?: string;
+        permission?: import("@opencode-ai/sdk/v2").PermissionRuleset;
     };
     copilot: Partial<CopilotSessionConfig>;
     claude: Record<string, never>;

package/dist/sdk/types.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ 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package/dist/sdk/workflows/builtin/deep-research-codebase/opencode/index.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../../../../src/sdk/workflows/builtin/deep-research-codebase/opencode/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;GA4BG;;;;;;;AAwEH,~~wBA2Za~~"}
1	+ {"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../../../../src/sdk/workflows/builtin/deep-research-codebase/opencode/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;GA4BG;;;;;;;AAwEH,wBA6aa"}

package/dist/sdk/workflows/builtin/open-claude-design/opencode/index.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../../../../src/sdk/workflows/builtin/open-claude-design/opencode/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAgCG;;;;;;;;;;;;;;;;;;;;;;;;AAoDH,~~wBAsea~~"}
1	+ {"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../../../../src/sdk/workflows/builtin/open-claude-design/opencode/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAgCG;;;;;;;;;;;;;;;;;;;;;;;;AAoDH,wBA6gBa"}

package/dist/sdk/workflows/builtin/ralph/claude/index.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../../../../src/sdk/workflows/builtin/ralph/claude/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;GAuBG;;;;;;;;;;;;~~AA8CH~~,~~wBA8Ka~~"}
1	+ {"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../../../../src/sdk/workflows/builtin/ralph/claude/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;GAuBG;;;;;;;;;;;;AA+CH,wBAyMa"}

package/dist/sdk/workflows/builtin/ralph/copilot/index.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../../../../src/sdk/workflows/builtin/ralph/copilot/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;GAoBG;;;;;;;;;;;;~~AA+DH~~,~~wBAsMa~~"}
1	+ {"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../../../../src/sdk/workflows/builtin/ralph/copilot/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;GAoBG;;;;;;;;;;;;AAgEH,wBAqNa"}

package/dist/sdk/workflows/builtin/ralph/helpers/prompts.d.ts CHANGED Viewed

@@ -151,6 +151,21 @@ export interface OrchestratorContext {
  * @param context - Planner handoff (the spec path or RFC markdown).
  */
 export declare function buildOrchestratorPrompt(spec: string, context?: OrchestratorContext): string;
+export interface CodeSimplifierContext {
+    /** Optional planner output (RFC markdown or absolute path to spec). */
+    plannerNotes?: string;
+}
+/**
+ * Build the code-simplifier prompt. Run by the `code-simplifier` sub-agent
+ * to inspect only the orchestrator's changes on the current branch and
+ * refine them for clarity, consistency, and maintainability — without
+ * altering functionality or test behaviour.
+ *
+ * @param spec - The user's original specification, used as context/fallback
+ *   when planner output is missing or ambiguous.
+ * @param context - Optional planner handoff (spec path or inline RFC markdown).
+ */
+export declare function buildCodeSimplifierPrompt(spec: string, context?: CodeSimplifierContext): string;
 /** Prompts for the three parallel infrastructure-discovery sub-agents. */
 export interface InfraDiscoveryPrompts {
     /** Prompt for the codebase-locator sub-agent. */

package/dist/sdk/workflows/builtin/ralph/helpers/prompts.d.ts.map CHANGED Viewed

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package/dist/sdk/workflows/builtin/ralph/opencode/index.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/package.json CHANGED Viewed

@@ -1,6 +1,6 @@
 {
   "name": "@bastani/atomic",
-  "version": "0.6.5",
+  "version": "0.6.6-0",
   "description": "Configuration management CLI and SDK for coding agents",
   "type": "module",
   "license": "MIT",