@bastani/atomic 0.5.21 → 0.5.22-0

package/.claude/settings.json

@@ -21,17 +21,5 @@
     "kotlin-lsp@claude-plugins-official": true,
     "swift-lsp@claude-plugins-official": true,
     "lua-lsp@claude-plugins-official": true
-  },
-  "hooks": {
-    "Stop": [
-      {
-        "hooks": [
-          {
-            "type": "command",
-            "command": "atomic _claude-stop-hook"
-          }
-        ]
-      }
-    ]
   }
 }

package/dist/commands/cli/claude-stop-hook.d.ts

@@ -0,0 +1,65 @@
+/**
+ * Claude Stop Hook command — internal handler for Claude Code's Stop hook.
+ *
+ * Claude invokes `atomic _claude-stop-hook` at the end of every turn,
+ * piping a JSON payload via stdin. This handler has two jobs:
+ *
+ *   1. Write a per-session marker file that the workflow runtime watches via
+ *      `fs.watch` to detect turn completion (replacing tmux-pane scraping).
+ *
+ *   2. Deliver follow-up prompts without tmux send-keys. After the marker is
+ *      written, this process block-polls `~/.atomic/claude-queue/<session_id>`.
+ *      If the workflow enqueues a prompt there, we read it, delete the queue
+ *      entry, and emit `{"decision":"block","reason":<prompt>}` on stdout.
+ *      Claude Code treats `reason` as the next user message and keeps the
+ *      agent loop running on the same session — no TUI keystrokes required.
+ *      If the workflow instead signals session end via
+ *      `~/.atomic/claude-release/<session_id>`, we exit 0 and let Claude stop.
+ *
+ * Usage (configured in Claude's Stop hook):
+ *   atomic _claude-stop-hook
+ *
+ * Payload (JSON via stdin):
+ *   {
+ *     "session_id": "abc123",
+ *     "transcript_path": "/path/to/transcript",
+ *     "cwd": "/path/to/cwd",
+ *     "stop_hook_active": false
+ *   }
+ */
+/** Shape of the JSON payload Claude pipes to the Stop hook via stdin. */
+export interface ClaudeStopHookPayload {
+    session_id: string;
+    transcript_path?: string;
+    cwd?: string;
+    stop_hook_active?: boolean;
+}
+/**
+ * Directory paths used by the Stop hook and the workflow runtime to exchange
+ * per-session signals.
+ *
+ * Exported so tests and `src/sdk/providers/claude.ts` share one source of truth.
+ */
+export declare function claudeHookDirs(): {
+    marker: string;
+    queue: string;
+    release: string;
+};
+/** Options for {@link claudeStopHookCommand}. Primarily used by tests to shrink the wait budget. */
+export interface ClaudeStopHookOptions {
+    /** Maximum time the hook waits for a queued follow-up prompt before letting Claude stop. */
+    waitTimeoutMs?: number;
+    /** Polling interval for queue/release detection. */
+    pollIntervalMs?: number;
+}
+/**
+ * Handler for the hidden `_claude-stop-hook` subcommand.
+ *
+ * Returns an exit code (0 on success or benign failure).  The caller
+ * in src/cli.ts does `process.exit(exitCode)`, so we just return the code.
+ *
+ * We always return 0 — a non-zero exit would surface as a hook error in
+ * Claude's transcript, which is not what we want.
+ */
+export declare function claudeStopHookCommand(options?: ClaudeStopHookOptions): Promise<number>;
+//# sourceMappingURL=claude-stop-hook.d.ts.map

package/dist/commands/cli/claude-stop-hook.d.ts.map

@@ -0,0 +1 @@
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package/dist/sdk/providers/claude.d.ts

@@ -18,18 +18,16 @@
  */
 import { type SessionMessage, type SDKUserMessage, type Options as SDKOptions } from "@anthropic-ai/claude-agent-sdk";
 /**
- * Remove a pane from the initialized map, freeing memory.
- * Call when a Claude session is killed or no longer needed.
+ * Remove a pane from the initialized map and signal the currently-blocked
+ * Stop hook that the session is over, so Claude stops promptly instead of
+ * waiting out the hook's safety timeout.
+ *
+ * Called by the runtime when a Claude stage is being torn down. Idempotent.
  */
-export declare function clearClaudeSession(paneId: string): void;
+export declare function clearClaudeSession(paneId: string): Promise<void>;
 export interface ClaudeSessionOptions {
     /** tmux pane ID where Claude should be started */
     paneId: string;
-    /**
-     * Workflow session directory. The first prompt is written here as
-     * `prompt.txt` and Claude is told to read from that path.
-     */
-    sessionDir: string;
     /** CLI flags to pass to the `claude` command (default: ["--allow-dangerously-skip-permissions", "--dangerously-skip-permissions"]) */
     chatFlags?: string[];
     /** Timeout in ms waiting for Claude TUI to be ready (default: 30s) */
@@ -64,7 +62,7 @@ export interface ClaudeSessionOptions {
  * });
  * ```
  */
-export declare function createClaudeSession(options: ClaudeSessionOptions): Promise<void>;
+export declare function createClaudeSession(options: ClaudeSessionOptions): Promise<string>;
 /**
  * Returns true if the most recent assistant message contains an
  * `AskUserQuestion` tool_use block that has not yet been resolved
@@ -75,6 +73,25 @@ export declare function createClaudeSession(options: ClaudeSessionOptions): Prom
  * Exported as `_hasUnresolvedHILTool` for unit testing.
  */
 export declare function _hasUnresolvedHILTool(messages: SessionMessage[]): boolean;
+/**
+ * Returns true when the most recent assistant message in the transcript
+ * ended with `stop_reason: "tool_use"` — i.e. the agent stopped the current
+ * API response to call a tool but has not yet produced its post-tool answer.
+ *
+ * Claude Code's Stop hook fires each time Claude "finishes responding",
+ * which includes intermediate tool-use responses in a multi-step agent
+ * loop (not just the final `end_turn`). If we return from `waitForIdle`
+ * on the first Stop event, we capture the transcript mid-loop — the
+ * final assistant text block is still being generated and won't be on
+ * disk yet, so `inbox.md` drops the actual answer.
+ *
+ * We keep watching until we see an assistant message with a terminal
+ * stop_reason (`end_turn`, `max_tokens`, `stop_sequence`, `refusal`),
+ * which is the real end of the turn.
+ *
+ * Exported as `_isMidAgentLoop` for unit testing.
+ */
+export declare function _isMidAgentLoop(messages: SessionMessage[]): boolean;
 /**
  * Core HIL watcher loop — pure logic, dependency-injected for testability.
  *
@@ -90,10 +107,37 @@ export declare function _hasUnresolvedHILTool(messages: SessionMessage[]): boole
  * reader are injected rather than hard-coded to `fs.watch` / `getSessionMessages`).
  */
 export declare function _runHILWatcher(events: AsyncIterable<unknown>, readMessages: () => Promise<SessionMessage[]>, onHIL: (waiting: boolean) => void): Promise<void>;
+/**
+ * Path helpers for the transcript JSONL written by Claude Code.
+ * @internal Exported for tests.
+ */
+export declare function transcriptDir(): string;
+/** @internal Exported for tests. */
+export declare function transcriptPath(claudeSessionId: string): string;
+/**
+ * Watch this session's transcript JSONL and call `onHIL` on every HIL-state
+ * transition — independently of the Stop hook.
+ *
+ * Why not piggyback on the Stop hook? `AskUserQuestion` is a deferred tool
+ * (`shouldDefer: true`, see Claude Code's
+ * `src/tools/AskUserQuestionTool/AskUserQuestionTool.tsx`). While the question
+ * is pending, Claude's agent loop blocks on the tool with
+ * `needsFollowUp === true`, so `handleStopHooks` never runs
+ * (`src/query.ts`: `if (!needsFollowUp)`). A watcher tied to the Stop-hook
+ * marker would sleep through the entire HIL window and only wake up after
+ * the user has already answered.
+ *
+ * Watches the parent session directory rather than the file itself so the
+ * attach is safe before Claude has created the JSONL on first query. Events
+ * are filtered by `<sessionId>.jsonl`. Returns when `signal` is aborted.
+ *
+ * @internal Exported for tests.
+ */
+export declare function watchTranscriptForHIL(claudeSessionId: string, onHIL: (waiting: boolean) => void, signal: AbortSignal): Promise<void>;
 /**
  * Path of the directory where the claude-stop-hook writes marker files.
- * Each Claude turn creates `~/.atomic/claude-stop/<session_id>` atomically
- * via rename, which triggers the `fs.watch` event in `waitForIdle`.
+ * Each Claude turn creates `~/.atomic/claude-stop/<session_id>` which
+ * triggers the `fs.watch` event in `waitForIdle`.
  *
  * @internal Exported for unit tests.
  */
@@ -105,53 +149,37 @@ export declare function markerDir(): string;
  */
 export declare function markerPath(claudeSessionId: string): string;
 /**
- * Wait for the Claude session to become idle using `fs.watch` on the
- * `~/.atomic/claude-stop/` marker directory.
- *
- * When Claude finishes a turn, the `atomic _claude-stop-hook` Stop hook writes
- * `~/.atomic/claude-stop/<session_id>` atomically (tmp file + rename).  The
- * rename triggers an OS-native `fs.watch` event on the parent directory —
- * far more reliable than polling tmux pane glyphs, which vary between Claude
- * Code versions.
- *
- * Algorithm:
- * 1. Watch the marker directory for events whose `filename` matches
- *    `claudeSessionId`.
- * 2. On a matching event, read the session transcript via
- *    `getSessionMessages` and test `_hasUnresolvedHILTool`.
- *    - If unresolved HIL: call `onHIL(true)`, unlink the marker (so the next
- *      turn's hook can fire again), and continue watching.
- *    - If no unresolved HIL after a prior HIL: call `onHIL(false)`.
- *    - If truly idle: slice messages from `transcriptBeforeCount` and return.
- * 3. Clean up the `fs.watch` watcher on any exit path via AbortController.
- *
- * The function signature is intentionally identical to the previous polling
- * implementation so all callers remain unchanged.
- *
- * @param paneId           - tmux pane (kept in signature for caller compat; not used here)
- * @param claudeSessionId  - Claude's session UUID (used to identify marker file)
- * @param transcriptBeforeCount - number of messages in transcript before this turn
- * @param beforeContent    - (unused) pane content before send; kept for compat
- * @param pollIntervalMs   - (unused) kept for compat; watch is event-driven
- * @param onHIL            - optional callback for HIL state changes
+ * Directory where the workflow runtime writes queued follow-up prompts that
+ * `atomic _claude-stop-hook` picks up and feeds back to Claude as
+ * `{decision:"block", reason:<prompt>}`. @internal Exported for unit tests.
+ */
+export declare function queueDir(): string;
+/** Return the queue file path for a given Claude session ID. @internal */
+export declare function queuePath(claudeSessionId: string): string;
+/**
+ * Directory where the runtime writes session-release signals. When the Stop
+ * hook sees `~/.atomic/claude-release/<session_id>` it exits 0 without
+ * emitting a block decision — the signal used by `clearClaudeSession` to
+ * tell Claude it's safe to actually stop. @internal Exported for unit tests.
+ */
+export declare function releaseDir(): string;
+/** Return the release file path for a given Claude session ID. @internal */
+export declare function releasePath(claudeSessionId: string): string;
+/**
+ * Signal the Stop hook's blocking wait that this session is done. Called
+ * during session teardown so the final hook invocation exits 0 promptly.
+ * Safe to call more than once.
  */
+export declare function releaseClaudeSession(claudeSessionId: string): Promise<void>;
 /**
  * @internal Exported for unit tests.
  */
-export declare function waitForIdle(_paneId: string, claudeSessionId: string | undefined, transcriptBeforeCount: number, _beforeContent: string, _pollIntervalMs: number, onHIL?: (waiting: boolean) => void): Promise<SessionMessage[]>;
+export declare function waitForIdle(claudeSessionId: string, transcriptBeforeCount: number): Promise<SessionMessage[]>;
 export interface ClaudeQueryOptions {
     /** tmux pane ID where Claude is running */
     paneId: string;
     /** The prompt to send */
     prompt: string;
-    /** Polling interval in ms (default: 2000) */
-    pollIntervalMs?: number;
-    /** Number of C-m presses per submit round (default: 1 for Claude) */
-    submitPresses?: number;
-    /** Max submit rounds if text isn't consumed (default: 6) */
-    maxSubmitRounds?: number;
-    /** Timeout in ms waiting for pane to be ready before sending (default: 30s) */
-    readyTimeoutMs?: number;
     /**
      * Called when the agent's human-in-the-loop state changes.
      * `waiting=true`  → AskUserQuestion is pending (agent blocked on user input).
@@ -176,14 +204,23 @@ export declare function extractAssistantText(msgs: ReadonlyArray<{
 /**
  * Send a prompt to a Claude Code interactive session running in a tmux pane.
  *
- * Flow (hardened from OMX's sendToWorker):
- * 1. Wait for pane readiness with exponential backoff
- * 2. Capture pane content before sending
- * 3. Send literal text via `send-keys -l --`
- * 4. Submit with C-m rounds and per-round capture verification
- * 5. Adaptive retry: clear line (C-u), re-type, re-submit
- * 6. Post-submit verification via active-task detection
- * 7. Wait for response by polling for output stabilization + prompt return
+ * First query and follow-up queries use different delivery channels:
+ *
+ *   - **First query**: stages the prompt in a tmp file and spawns
+ *     `claude --session-id <UUID> 'Read the prompt in <path>'` into the
+ *     empty pane. Claude's first action is a Read tool call, which
+ *     sidesteps ARG_MAX on the spawn argv.
+ *
+ *   - **Follow-up query**: writes the prompt to
+ *     `~/.atomic/claude-queue/<session_id>`. The Stop hook from the
+ *     previous turn is blocked in a poll loop there; it reads the queue
+ *     entry and emits `{"decision":"block","reason":<prompt>}` on stdout,
+ *     which Claude Code feeds back as the next user message. No tmux
+ *     keystrokes, no paste-buffer dance, no pane-state polling — the
+ *     whole delivery rides Claude's own continuation API.
+ *
+ * Both paths converge on `waitForIdle`, which watches the Stop-hook marker
+ * file for this session and returns the transcript slice for the turn.
  *
  * @example
  * ```typescript
@@ -197,20 +234,6 @@ export declare function extractAssistantText(msgs: ReadonlyArray<{
  * ```
  */
 export declare function claudeQuery(options: ClaudeQueryOptions): Promise<SessionMessage[]>;
-/**
- * Default query options the user can set per-stage via the `sessionOpts` arg.
- * These become defaults for every `s.session.query()` call within that stage.
- */
-export interface ClaudeQueryDefaults {
-    /** Polling interval in ms (default: 2000) */
-    pollIntervalMs?: number;
-    /** Number of C-m presses per submit round (default: 1) */
-    submitPresses?: number;
-    /** Max submit rounds if text isn't consumed (default: 6) */
-    maxSubmitRounds?: number;
-    /** Timeout in ms waiting for pane to be ready before sending (default: 30s) */
-    readyTimeoutMs?: number;
-}
 /**
  * Synthetic client wrapper for Claude stages.
  * Auto-starts the Claude CLI in the tmux pane during `start()`.
@@ -218,13 +241,19 @@ export interface ClaudeQueryDefaults {
 export declare class ClaudeClientWrapper {
     readonly paneId: string;
     private readonly opts;
-    private readonly sessionDir;
-    constructor(paneId: string, opts: {
+    constructor(paneId: string, opts?: {
         chatFlags?: string[];
         readyTimeoutMs?: number;
-    } | undefined, sessionDir: string);
-    /** Start the Claude CLI in the tmux pane. Called by the runtime during init. */
-    start(): Promise<void>;
+    });
+    /**
+     * Start the Claude CLI in the tmux pane. Returns the Claude session UUID
+     * so the caller can pass it to `ClaudeSessionWrapper` (and thus expose it
+     * as `s.sessionId` to workflows). This is the UUID used by Claude Code to
+     * name its JSONL transcript file and to key the Stop-hook marker — workflows
+     * pass it to `s.save(s.sessionId)` so the save path reads the correct
+     * transcript even when many Claude sessions run in parallel.
+     */
+    start(): Promise<string>;
     /** Noop — cleanup is handled by the runtime via `clearClaudeSession`. */
     stop(): Promise<void>;
 }
@@ -235,11 +264,18 @@ export declare class ClaudeClientWrapper {
 export declare class ClaudeSessionWrapper {
     readonly paneId: string;
     readonly sessionId: string;
-    private readonly defaults;
     private readonly onHIL;
-    constructor(paneId: string, sessionId: string, defaults?: ClaudeQueryDefaults, onHIL?: (waiting: boolean) => void);
-    /** Send a prompt to Claude and wait for the response. */
-    query(prompt: string, opts?: Partial<ClaudeQueryDefaults & SDKOptions>): Promise<SessionMessage[]>;
+    constructor(paneId: string, sessionId: string, onHIL?: (waiting: boolean) => void);
+    /**
+     * Send a prompt to Claude and wait for the response.
+     *
+     * The `_options` parameter exists for signature compatibility with
+     * {@link HeadlessClaudeSessionWrapper.query} (which forwards SDK options
+     * like `agent`, `permissionMode`, etc. to the Agent SDK). In the
+     * interactive pane path these options don't apply — we're driving the
+     * `claude` CLI binary, not the SDK — so they are silently ignored.
+     */
+    query(prompt: string, _options?: Partial<SDKOptions>): Promise<SessionMessage[]>;
     /** Noop — for API symmetry with CopilotSession.disconnect(). */
     disconnect(): Promise<void>;
 }
@@ -248,7 +284,13 @@ export declare class ClaudeSessionWrapper {
  * Used when `options.headless` is true in `ctx.stage()`.
  */
 export declare class HeadlessClaudeClientWrapper {
-    start(): Promise<void>;
+    /**
+     * Headless Claude stages don't pre-allocate a session — each `query()` call
+     * to {@link HeadlessClaudeSessionWrapper} spawns a fresh Agent SDK run that
+     * emits its own `session_id`. We still return an empty string here so the
+     * method signature matches {@link ClaudeClientWrapper.start}.
+     */
+    start(): Promise<string>;
     stop(): Promise<void>;
 }
 /**
@@ -264,9 +306,15 @@ export declare class HeadlessClaudeClientWrapper {
  */
 export declare class HeadlessClaudeSessionWrapper {
     readonly paneId = "";
-    readonly sessionId: string;
-    constructor(sessionId: string);
-    query(prompt: string | AsyncIterable<SDKUserMessage>, options?: Partial<ClaudeQueryDefaults & SDKOptions>): Promise<SessionMessage[]>;
+    /**
+     * The Claude session UUID of the most recently completed `query()`. Exposed
+     * via `s.sessionId` so workflows can pass it to `s.save(s.sessionId)` and
+     * have the save path read the correct transcript, even when several headless
+     * Claude stages run in parallel (each call gets its own SDK-assigned UUID).
+     */
+    private _lastSessionId;
+    get sessionId(): string;
+    query(prompt: string | AsyncIterable<SDKUserMessage>, options?: Partial<SDKOptions>): Promise<SessionMessage[]>;
     disconnect(): Promise<void>;
 }
 /**

package/dist/sdk/providers/claude.d.ts.map

@@ -1 +1 @@
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package/dist/sdk/runtime/executor.d.ts.map

@@ -1 +1 @@
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package/dist/sdk/types.d.ts

@@ -8,7 +8,7 @@ import type { SessionPromptResponse } from "@opencode-ai/sdk/v2";
 import type { SessionMessage } from "@anthropic-ai/claude-agent-sdk";
 import type { CopilotClient, CopilotClientOptions, CopilotSession, SessionConfig as CopilotSessionConfig } from "@github/copilot-sdk";
 import type { OpencodeClient, Session as OpencodeSession } from "@opencode-ai/sdk/v2";
-import type { ClaudeClientWrapper, ClaudeSessionWrapper, ClaudeQueryDefaults } from "./providers/claude.ts";
+import type { ClaudeClientWrapper, ClaudeSessionWrapper } from "./providers/claude.ts";
 /** Supported agent types */
 export type AgentType = "copilot" | "opencode" | "claude";
 /**
@@ -30,7 +30,7 @@ type ClientOptionsMap = {
  * Maps each agent to the session create options the user passes to `ctx.stage()`.
  * - OpenCode: `client.session.create()` body params
  * - Copilot: `client.createSession()` config (onPermissionRequest defaults to approveAll)
- * - Claude: `claudeQuery()` defaults for subsequent queries
+ * - Claude: no per-session options — delivery is driven entirely by Stop hooks.
  */
 type SessionOptionsMap = {
     opencode: {
@@ -39,7 +39,7 @@ type SessionOptionsMap = {
         workspaceID?: string;
     };
     copilot: Partial<CopilotSessionConfig>;
-    claude: ClaudeQueryDefaults;
+    claude: Record<string, never>;
 };
 /** Maps each agent to the `s.client` type provided in the stage callback. */
 type ClientMap = {
@@ -61,7 +61,7 @@ export type StageSessionOptions<A extends AgentType> = SessionOptionsMap[A];
 export type ProviderClient<A extends AgentType> = ClientMap[A];
 /** The `s.session` type in a stage callback, resolved by agent type. */
 export type ProviderSession<A extends AgentType> = SessionMap[A];
-export type { CopilotClient, CopilotClientOptions, CopilotSession, CopilotSessionConfig, OpencodeClient, OpencodeSession, ClaudeClientWrapper, ClaudeSessionWrapper, ClaudeQueryDefaults, };
+export type { CopilotClient, CopilotClientOptions, CopilotSession, CopilotSessionConfig, OpencodeClient, OpencodeSession, ClaudeClientWrapper, ClaudeSessionWrapper, };
 /** A source validation warning emitted by provider-specific workflow validators. */
 export interface ValidationWarning {
     rule: string;

package/dist/sdk/types.d.ts.map

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package/dist/sdk/workflows/index.d.ts

@@ -6,7 +6,7 @@
  * for spawning agent sessions using native TypeScript control flow.
  */
 export { defineWorkflow, WorkflowBuilder } from "../define-workflow.ts";
-export type { AgentType, ValidationWarning, Transcript, SavedMessage, SaveTranscript, SessionContext, SessionRef, SessionHandle, SessionRunOptions, WorkflowContext, WorkflowOptions, WorkflowDefinition, WorkflowInput, WorkflowInputType, StageClientOptions, StageSessionOptions, ProviderClient, ProviderSession, CopilotClient, CopilotClientOptions, CopilotSession, CopilotSessionConfig, OpencodeClient, OpencodeSession, ClaudeClientWrapper, ClaudeSessionWrapper, ClaudeQueryDefaults, } from "../types.ts";
+export type { AgentType, ValidationWarning, Transcript, SavedMessage, SaveTranscript, SessionContext, SessionRef, SessionHandle, SessionRunOptions, WorkflowContext, WorkflowOptions, WorkflowDefinition, WorkflowInput, WorkflowInputType, StageClientOptions, StageSessionOptions, ProviderClient, ProviderSession, CopilotClient, CopilotClientOptions, CopilotSession, CopilotSessionConfig, OpencodeClient, OpencodeSession, ClaudeClientWrapper, ClaudeSessionWrapper, } from "../types.ts";
 export type { SessionEvent as CopilotSessionEvent } from "@github/copilot-sdk";
 export type { SessionPromptResponse as OpenCodePromptResponse } from "@opencode-ai/sdk/v2";
 export type { SessionMessage as ClaudeSessionMessage } from "@anthropic-ai/claude-agent-sdk";

package/dist/sdk/workflows/index.d.ts.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@bastani/atomic",
-  "version": "0.5.21",
+  "version": "0.5.22-0",
   "description": "Configuration management CLI and SDK for coding agents",
   "type": "module",
   "license": "MIT",