@basemaps/cli-raster 8.6.0 → 8.11.0

package/build/cogify/cli/cli.charts.js

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+import { Bounds, EpsgCode, GoogleTms } from '@basemaps/geo';
+import { fsa, stringToUrlFolder, Tiff, urlToString } from '@basemaps/shared';
+import { getLogger, logArguments, Url, UrlFolder } from '@basemaps/shared';
+import { CliDate, CliId, CliInfo } from '@basemaps/shared/build/cli/info.js';
+import { TiffTag, TiffTagGeo } from '@cogeotiff/core';
+import { command, number, option, optional, restPositionals } from 'cmd-ts';
+import { mkdir, rm } from 'fs/promises';
+import { tmpdir } from 'os';
+import pLimit from 'p-limit';
+import path from 'path';
+import { URL } from 'url';
+import { gdalBuildChartsCommand } from '../gdal/gdal.command.js';
+import { GdalRunner } from '../gdal/gdal.runner.js';
+import { bufferCutline, reprojectCutline, wrapCutline } from '../gdal/ogr2ogr.command.js';
+/** Limit the creation of COGs to concurrency at the same time */
+const Q = pLimit(10);
+// ChartCode regex
+const chartCodeRegex = /^[A-Z]{2}\d+-\d+$/;
+// Prepare a temporary folder to store the gdal processed cutlines and tiffs
+const tmpFolder = stringToUrlFolder(path.join(tmpdir(), CliId));
+/**
+ * Process and standardize charts maps tiffs, and creating STAC collections and items.
+ *
+ * @param source: Location of the source files
+ * @example s3://linz-hydrographic-upload/charts/NChart1200/
+ *
+ * @param target: Location of the target path
+ */
+export const ChartsCreationCommand = command({
+    name: 'cogify-charts',
+    version: CliInfo.version,
+    description: 'List input charts map files, cutting off the edges and creating standardized outputs.',
+    args: {
+        ...logArguments,
+        source: option({
+            type: optional(UrlFolder),
+            long: 'source',
+            description: 'Source location of the charts tiffs',
+        }),
+        target: option({
+            type: UrlFolder,
+            long: 'target',
+            description: 'Target location for the output files',
+        }),
+        cutline: option({
+            type: UrlFolder,
+            long: 'cutline',
+            defaultValue: () => new URL('s3://linz-hydrographic-upload/charts/RNCPANEL/'),
+            description: 'Location of the cutlines to cut tiffs, save the shp files for the cutlines.',
+        }),
+        backup: option({
+            type: UrlFolder,
+            long: 'backup',
+            defaultValue: () => new URL('s3://linz-hydrographic-upload/charts/CChart/'),
+            description: 'Location of the backup tiff files for get all the imagery metadata.',
+        }),
+        bufferPixels: option({
+            type: number,
+            long: 'buffer-pixels',
+            defaultValue: () => 10,
+            description: 'Number of pixels to buffer the cutlines.',
+        }),
+        paths: restPositionals({
+            type: Url,
+            description: 'Source paths for the charts tiffs',
+        }),
+    },
+    async handler(args) {
+        const logger = getLogger(this, args, 'cli-raster');
+        logger.info('Charts:Start');
+        const files = args.source ? await fsa.toArray(fsa.list(args.source)) : args.paths;
+        // Process and standardize charts maps tiffs
+        await mkdir(tmpFolder, { recursive: true });
+        const outputs = new Set();
+        const toProcess = files.map((file) => Q(async () => {
+            if (!file.href.endsWith('.tif'))
+                return;
+            const filename = file.pathname.split('/').pop();
+            if (filename == null) {
+                logger.warn({ file }, 'Filename not found in URL');
+                return;
+            }
+            const chartCode = filename?.split('.')[0];
+            if (chartCode == null || !chartCodeRegex.test(chartCode)) {
+                logger.warn({ file }, 'Chart code not found or invalid');
+                return;
+            }
+            // Download the source tiff file and cutline files
+            const sourceTiff = await downloadCharts(file, filename, logger);
+            const cutline = await downloadCutlines(new URL(args.cutline.href), chartCode, logger);
+            logger.info({ file: file.href, chartCode }, 'Charts:Processing');
+            const tiff = await new Tiff(fsa.source(file)).init();
+            const backUpUrl = new URL(filename, args.backup);
+            const metadata = await fetchMetadata(tiff, backUpUrl, logger);
+            // Prepare buffered cutline
+            const bufferedCutline = await prepareCutline(cutline, chartCode, metadata.gsd, args.bufferPixels, logger);
+            // Create cog for each polygon from the cutline to seperate the cogs that crossing antimeridian
+            const targetPath = new URL(`${GoogleTms.projection.code}/${CliId}/${chartCode}/`, args.target);
+            if (targetPath.protocol === 'file:')
+                await mkdir(targetPath, { recursive: true });
+            // Create COGs
+            await createCogs(sourceTiff, cutline, chartCode, bufferedCutline, metadata, targetPath, logger);
+            // Add the target files to the outputs
+            outputs.add(urlToString(targetPath));
+            await tiff.source.close?.();
+        }));
+        await Promise.all(toProcess);
+        await fsa.write(fsa.toUrl('/tmp/extract/output.json'), JSON.stringify(Array.from(outputs), null, 2));
+        logger.info({ outputCount: outputs.size, target: args.target.href }, 'Charts:Done');
+        await rm(tmpFolder, { recursive: true, force: true });
+    },
+});
+// Download Charts Tiff files into local folder for dgal to process
+async function downloadCharts(file, filename, logger) {
+    logger.info({ file: file.href, filename }, 'Charts:DownloadTiff');
+    if ((await fsa.head(file)) == null)
+        throw new Error(`File does not exist: ${file.href}`);
+    const sourceTiff = new URL(filename, tmpFolder);
+    await fsa.write(sourceTiff, fsa.readStream(file));
+    return sourceTiff;
+}
+// Download Charts Cutlines into local folder for gdal to process
+async function downloadCutlines(cutline, chartCode, logger) {
+    logger.info({ cutline: cutline.href, chartCode }, 'Charts:DownloadCutline');
+    const formats = ['shp', 'shx', 'dbf', 'prj'];
+    for (const format of formats) {
+        const cutlineFile = new URL(`${chartCode}.${format}`, tmpFolder);
+        const cutlineUrl = new URL(`${cutline.href}${chartCode}.${format}`);
+        if ((await fsa.head(cutlineUrl)) == null) {
+            logger.warn({ cutline: cutlineUrl.href }, 'Charts:Cutline does not exist');
+            continue;
+        }
+        await fsa.write(cutlineFile, fsa.readStream(cutlineUrl));
+    }
+    return new URL(`${chartCode}.shp`, tmpFolder);
+}
+/**
+ * Prepare the cutline for charts mapsheets by wrapping, reprojecting, and buffering it to remove edge artifacts.
+ * Only cut the charts in Web Mercator projection to provide better outputs
+ */
+async function prepareCutline(cutline, chartCode, gsd, bufferPixels, logger) {
+    // Wrap the cutline to multipolygon if it crosses the Prime Meridian
+    logger.info({ cutline: cutline.href, chartCode }, 'Charts:WrapCutline');
+    const wrappedCutline = new URL(`${chartCode}-wrapped.shp`, tmpFolder);
+    await new GdalRunner(wrapCutline(wrappedCutline, cutline)).run(logger);
+    // Reproject the cutline to the target tile matrix
+    logger.info({ cutline: cutline.href, chartCode, tileMatrix: GoogleTms.identifier }, 'Charts:ReprojectCutline');
+    const reprojectedCutline = new URL(`${chartCode}-${GoogleTms.identifier}.shp`, tmpFolder);
+    await new GdalRunner(reprojectCutline(reprojectedCutline, wrappedCutline, GoogleTms)).run(logger);
+    // Buffer the cutline
+    logger.info({ cutline: cutline.href, chartCode, gsd, bufferPixels }, 'Charts:BufferCutline');
+    const bufferedCutline = new URL(`${chartCode}-buffered.geojson`, tmpFolder);
+    await new GdalRunner(bufferCutline(bufferedCutline, reprojectedCutline, `${chartCode}-${GoogleTms.identifier}`, gsd, bufferPixels)).run(logger);
+    return bufferedCutline;
+}
+/**
+ * Fetch the Ground Sample Distance (GSD) and Bounding Box (BBOX) from the TIFF file.
+ * Some of charts mapsheets do not have the GSD in the original TIFF metadata.(NChart1200 folder)
+ * But the GSD is always the same for the same chart code tiff files from other folders (CChart).
+ * If the GSD is not found, it attempts to fetch it from a backup location.
+ */
+async function fetchMetadata(tiff, backUpUrl, logger) {
+    logger.info({ file: tiff.source.url }, 'Charts:FetchImageryMetadata');
+    const source = tiff.source.url;
+    const size = tiff.images[0].size;
+    const epsg = tiff.images[0].epsg ?? tiff.images[0].valueGeo(TiffTagGeo.GeodeticCRSGeoKey) ?? EpsgCode.Wgs84;
+    try {
+        const gsd = tiff.images[0].resolution[0];
+        return { source, gsd, epsg, size };
+    }
+    catch (error) {
+        logger.warn({ file: tiff.source.url }, 'Tag not found try to fetch from back up folder');
+        const exist = await fsa.head(backUpUrl);
+        if (!exist)
+            throw new Error(`No back up file to extract metadata: ${backUpUrl.href}`);
+        const backUpTiff = await new Tiff(fsa.source(backUpUrl)).init();
+        const backUpTag = await backUpTiff.images[0].fetch(TiffTag.ModelPixelScale);
+        if (backUpTag == null)
+            throw new Error(`ModelPixelScale tag not found in ${backUpUrl.href}`);
+        await backUpTiff.source.close?.();
+        return {
+            source: tiff.source.url,
+            gsd: backUpTag[0],
+            epsg,
+            size: tiff.images[0].size,
+        };
+    }
+}
+export function geojsonToBbox(geojson) {
+    let union = null;
+    for (const feature of geojson.features) {
+        let bounds;
+        if (feature.geometry.type === 'Polygon') {
+            bounds = Bounds.fromMultiPolygon([feature.geometry.coordinates]);
+        }
+        else if (feature.geometry.type === 'MultiPolygon') {
+            bounds = Bounds.fromMultiPolygon(feature.geometry.coordinates);
+        }
+        else {
+            throw new Error('GeoJSON must contain Polygon or MultiPolygon geometries');
+        }
+        if (union == null) {
+            union = bounds;
+        }
+        else {
+            union = union.union(bounds);
+        }
+    }
+    if (union == null)
+        throw new Error('No union found in GeoJSON features');
+    return union.toBbox();
+}
+async function createStacItem(chartCode, metadata, sourceCutline, cutline, logger) {
+    // Create stac item
+    const geojson = await fsa.readJson(cutline);
+    logger.info({ chartCode }, 'Charts:CreateStacItem');
+    const item = {
+        id: `${CliId}/${chartCode}`,
+        type: 'Feature',
+        collection: CliId,
+        stac_version: '1.0.0-beta.2',
+        stac_extensions: [],
+        geometry: geojson.features[0].geometry,
+        bbox: geojsonToBbox(geojson),
+        links: [
+            { href: `./${chartCode}.json`, rel: 'self' },
+            { href: './collection.json', rel: 'collection' },
+            { href: './collection.json', rel: 'parent' },
+            {
+                href: urlToString(metadata.source),
+                rel: 'linz_basemaps:source',
+                type: 'image/tiff; application=geotiff;',
+                'linz_basemaps:source_height': metadata.size.height,
+                'linz_basemaps:source_width': metadata.size.width,
+            },
+            {
+                href: urlToString(sourceCutline),
+                rel: 'linz_basemaps:cutline',
+            },
+        ],
+        properties: {
+            datetime: CliDate,
+            'proj:epsg': GoogleTms.projection.code,
+            'linz_basemaps:options': {
+                tileMatrix: GoogleTms.identifier,
+                sourceEpsg: metadata.epsg,
+            },
+            'linz_basemaps:generated': {
+                package: CliInfo.package,
+                hash: CliInfo.hash,
+                version: CliInfo.version,
+                datetime: CliDate,
+            },
+        },
+        assets: {},
+    };
+    return item;
+}
+function CreateStacCollection(chartCode, items, logger) {
+    // Create stac collection
+    logger.info({ chartCode }, 'Charts:CreateStacCollection');
+    const collection = {
+        id: CliId,
+        type: 'Collection',
+        stac_version: '1.0.0',
+        stac_extensions: [],
+        license: 'CC-BY-4.0',
+        title: `New Zealand Charts Mapsheets - ${chartCode}`,
+        description: `New Zealand Charts Mapsheets - ${chartCode} - ${GoogleTms.identifier}`,
+        extent: {
+            spatial: { bbox: items.map((i) => i.bbox) },
+            temporal: { interval: [[CliDate, null]] },
+        },
+        links: [
+            { rel: 'self', href: './collection.json', type: 'application/json' },
+            ...items.map((item) => ({
+                href: `./${item.id}.json`,
+                rel: 'item',
+                type: 'application/json',
+            })),
+        ],
+    };
+    for (const item of items) {
+        collection.extent.spatial.bbox.push(item.bbox);
+    }
+    return collection;
+}
+// Split the cutline into single polygon features and create cog for each polygon
+async function createCogs(sourceTiff, sourceCutline, chartCode, bufferedCutline, metadata, targetPath, logger) {
+    const geojson = await fsa.readJson(bufferedCutline);
+    let index = 0;
+    const items = [];
+    for (const feature of geojson.features) {
+        if (feature.geometry.type === 'Polygon') {
+            const splitCutline = {
+                type: 'FeatureCollection',
+                crs: { type: 'name', properties: { name: 'urn:ogc:def:crs:EPSG::3857' } },
+                features: [feature],
+            };
+            const cutlineFile = new URL(`cutline-${index}.geojson`, tmpFolder);
+            await fsa.write(cutlineFile, JSON.stringify(splitCutline));
+            // Create Stac item for each cog
+            const item = await createStacItem(`${chartCode}-${index}`, metadata, sourceCutline, cutlineFile, logger);
+            await fsa.write(new URL(`${chartCode}-${index}.json`, targetPath), JSON.stringify(item, null, 2));
+            items.push(item);
+            // Create Cog for the chart map
+            const cog = new URL(`${chartCode}-${index}.tif`, tmpFolder);
+            await new GdalRunner(gdalBuildChartsCommand(cog, sourceTiff, cutlineFile, GoogleTms)).run(logger);
+            await fsa.write(new URL(`${chartCode}-${index}.tif`, targetPath), fsa.readStream(cog));
+            index++;
+        }
+        else if (feature.geometry.type === 'MultiPolygon') {
+            for (const coords of feature.geometry.coordinates) {
+                const splitCutline = {
+                    type: 'FeatureCollection',
+                    crs: { type: 'name', properties: { name: 'urn:ogc:def:crs:EPSG::3857' } },
+                    features: [
+                        {
+                            type: 'Feature',
+                            geometry: { type: 'Polygon', coordinates: coords },
+                        },
+                    ],
+                };
+                const cutlineFile = new URL(`cutline-${index}.geojson`, tmpFolder);
+                await fsa.write(cutlineFile, JSON.stringify(splitCutline));
+                // Create Stac item for each cog
+                const item = await createStacItem(`${chartCode}-${index}`, metadata, sourceCutline, cutlineFile, logger);
+                await fsa.write(new URL(`${chartCode}-${index}.json`, targetPath), JSON.stringify(item, null, 2));
+                items.push(item);
+                // Create Cog for the chart map
+                const cog = new URL(`${chartCode}-${index}.tif`, tmpFolder);
+                await new GdalRunner(gdalBuildChartsCommand(cog, sourceTiff, cutlineFile, GoogleTms)).run(logger);
+                await fsa.write(new URL(`${chartCode}-${index}.tif`, targetPath), fsa.readStream(cog));
+                index++;
+            }
+        }
+        else {
+            throw new Error('GeoJSON must contain Polygon or MultiPolygon geometries');
+        }
+    }
+    // Create Stac collection
+    const collection = CreateStacCollection(chartCode, items, logger);
+    await fsa.write(new URL('collection.json', targetPath), JSON.stringify(collection, null, 2));
+}
+//# sourceMappingURL=cli.charts.js.map

package/build/cogify/cli/cli.charts.js.map

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package/build/cogify/cli/cli.cog.js

@@ -1,5 +1,5 @@
 import { isEmptyTiff } from '@basemaps/config-loader';
-import { Projection, ProjectionLoader, TileId, TileMatrixSets } from '@basemaps/geo';
+import { Projection, ProjectionLoader, TileId, TileMatrixSets, TmsLoader } from '@basemaps/geo';
 import { fsa, stringToUrlFolder, Tiff } from '@basemaps/shared';
 import { getLogger, logArguments, Url, UrlArrayJsonFile } from '@basemaps/shared';
 import { CliId, CliInfo } from '@basemaps/shared/build/cli/info.js';
@@ -124,7 +124,7 @@ export const BasemapsCogifyCreateCommand = command({
                 // Location to where the tiff should be stored
                 const tiffPath = new URL(tileId + '.tiff', url);
                 const itemStacPath = new URL(tileId + '.json', url);
-                const tileMatrix = TileMatrixSets.find(options.tileMatrix);
+                const tileMatrix = TileMatrixSets.find(options.tileMatrix) ?? (await TmsLoader.load(options.sourceEpsg));
                 if (tileMatrix == null)
                     throw new Error('Failed to find tileMatrix: ' + options.tileMatrix);
                 const sourceFiles = getSources(item.links);
@@ -255,8 +255,12 @@ async function createCog(ctx) {
     if (tileMatrix == null)
         throw new Error('Failed to find tile matrix: ' + options.tileMatrix);
     logger?.debug({ tileId }, 'Cog:Create:VrtSource');
+    let addAlpha = false;
+    if (options.presetBands?.includes('alpha') && options.presetBands.length > options.sourceBands.length) {
+        addAlpha = true;
+    }
     // Create the vrt of all the source files
-    const vrtSourceCommand = gdalBuildVrt(new URL(`${tileId}-source.vrt`, ctx.tempFolder), ctx.sourceFiles);
+    const vrtSourceCommand = gdalBuildVrt(new URL(`${tileId}-source.vrt`, ctx.tempFolder), ctx.sourceFiles, addAlpha);
     await new GdalRunner(vrtSourceCommand).run(logger);
     logger?.debug({ tileId }, 'Cog:Create:VrtWarp');
     const cutlineProperties = { url: null, blend: ctx.cutline.blend };
@@ -285,10 +289,7 @@ async function createCog(ctx) {
     const gdalCreateCommand = gdalCreate(new URL(`${tileId}-bg.tiff`, ctx.tempFolder), options.background, options);
     await new GdalRunner(gdalCreateCommand).run(logger);
     // Create a vrt with the background tiff behind the source file vrt
-    const vrtMergeCommand = gdalBuildVrt(new URL(`${tileId}-merged.vrt`, ctx.tempFolder), [
-        gdalCreateCommand.output,
-        vrtWarpCommand.output,
-    ]);
+    const vrtMergeCommand = gdalBuildVrt(new URL(`${tileId}-merged.vrt`, ctx.tempFolder), [gdalCreateCommand.output, vrtWarpCommand.output], false);
     await new GdalRunner(vrtMergeCommand).run(logger);
     // Create the COG from the merged vrt with a forced background
     const cogCreateCommand = gdalBuildCog(new URL(`${tileId}.tiff`, ctx.tempFolder), vrtMergeCommand.output, options);

package/build/cogify/cli/cli.cog.js.map

@@ -1 +1 @@
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package/build/cogify/cli/cli.cover.d.ts

@@ -5,7 +5,8 @@ export declare const BasemapsCogifyCoverCommand: Partial<import("cmd-ts/dist/cjs
         cutline: URL | undefined;
         cutlineBlend: number;
         paths: URL[];
-        preset: string;
+        preset: "lzw" | "webp" | "webp_80" | "lerc_1mm" | "lerc_10mm" | "zstd_17";
+        presetBand: string | undefined;
         tileMatrix: string;
         baseZoomOffset: number | undefined;
         requireStacCollection: boolean;
@@ -18,7 +19,8 @@ export declare const BasemapsCogifyCoverCommand: Partial<import("cmd-ts/dist/cjs
     cutline: URL | undefined;
     cutlineBlend: number;
     paths: URL[];
-    preset: string;
+    preset: "lzw" | "webp" | "webp_80" | "lerc_1mm" | "lerc_10mm" | "zstd_17";
+    presetBand: string | undefined;
     tileMatrix: string;
     baseZoomOffset: number | undefined;
     requireStacCollection: boolean;

package/build/cogify/cli/cli.cover.js

@@ -1,12 +1,11 @@
 import { ConfigProviderMemory } from '@basemaps/config';
 import { initConfigFromUrls } from '@basemaps/config-loader';
 import { GoogleTms, Nztm2000QuadTms, TileId } from '@basemaps/geo';
-import { fsa, urlToString } from '@basemaps/shared';
-import { getLogger, isArgo, logArguments, RgbaType, Url, UrlFolder } from '@basemaps/shared';
+import { fsa, getLogger, isArgo, logArguments, RgbaType, Url, UrlFolder, urlToString } from '@basemaps/shared';
 import { CliId, CliInfo } from '@basemaps/shared/build/cli/info.js';
 import { Metrics } from '@linzjs/metrics';
 import { command, flag, number, oneOf, option, optional, restPositionals, string } from 'cmd-ts';
-import { Presets } from '../../preset.js';
+import { AllowedPresets, BandPresets, Presets } from '../../preset.js';
 import { CutlineOptimizer } from '../covering/cutline.js';
 import { createTileCover } from '../covering/tile.cover.js';
 import { createFileStats } from '../stac.js';
@@ -41,6 +40,11 @@ export const BasemapsCogifyCoverCommand = command({
             defaultValue: () => 'webp',
             defaultValueIsSerializable: true,
         }),
+        presetBand: option({
+            type: optional(oneOf(Object.keys(BandPresets))),
+            long: 'preset-bands',
+            description: 'Tell GDAL what the bands in the source image represent see `-colorinterp` in GDAL',
+        }),
         tileMatrix: option({
             type: string,
             long: 'tile-matrix',
@@ -66,6 +70,10 @@ export const BasemapsCogifyCoverCommand = command({
     async handler(args) {
         const metrics = new Metrics();
         const logger = getLogger(this, args, 'cli-raster');
+        // some presets like webp only support RGB or RGBA so they cannot be used with all band preset
+        if (args.presetBand != null && !AllowedPresets[args.preset].includes(args.presetBand)) {
+            throw new Error(`Preset ${args.preset} does not support band option ${args.presetBand}`);
+        }
         const mem = new ConfigProviderMemory();
         metrics.start('imagery:load');
         const cfg = await initConfigFromUrls(mem, args.paths);
@@ -74,6 +82,18 @@ export const BasemapsCogifyCoverCommand = command({
             throw new Error('No imagery found');
         const im = cfg.imagery[0];
         logger.info({ files: im.files.length, title: im.title, duration: imageryLoadTime }, 'Imagery:Loaded');
+        // Ensure the imagery has the correct number of bands for the preset
+        if (args.presetBand != null && im.bands != null) {
+            const bandList = BandPresets[args.presetBand];
+            if (bandList && im.bands.length !== bandList.length) {
+                if (bandList.includes('alpha') && im.bands.length === bandList.length - 1) {
+                    logger.warn({ title: im.title, bands: im.bands.length, expectedBands: bandList.length }, `Imagery:Bands:MissingAlpha - Adding alpha to source`);
+                }
+                else {
+                    throw new Error(`Imagery has ${im.bands.length} bands, preset ${args.presetBand} requires ${bandList.join(', ')}`);
+                }
+            }
+        }
         if (im.collection == null && args.requireStacCollection) {
             throw new Error(`No collection.json found with imagery: ${im.url.href}`);
         }
@@ -95,6 +115,7 @@ export const BasemapsCogifyCoverCommand = command({
             metrics,
             cutline,
             preset: args.preset,
+            presetBands: BandPresets[args.presetBand] ?? undefined,
             background: args.background,
             targetZoomOffset: args.baseZoomOffset,
         };

package/build/cogify/cli/cli.cover.js.map

@@ -1 +1 @@
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