@barivia/barsom-mcp 0.6.5 → 0.7.1

package/dist/tools/training_prep.js

@@ -0,0 +1,351 @@
+import { z } from "zod";
+import { registerAppTool } from "@modelcontextprotocol/ext-apps/server";
+import { apiCall, fetchTrainingGuidanceFromApi, getClientSupportsMcpApps, getVizPort, structuredTextResult, } from "../shared.js";
+import { buildTrainMapParams, fetchTrainingPresets, } from "./jobs.js";
+import { attachTrainingReviewPayload, consumeTrainingReview, getTrainingReview, storeTrainingReview, } from "./training_review_store.js";
+export const TRAINING_PREP_URI = "ui://barsom/training-prep";
+function getNumericColumns(preview) {
+    const stats = preview.column_stats ?? [];
+    return stats
+        .filter((stat) => stat.is_numeric !== false)
+        .map((stat) => String(stat.column ?? ""))
+        .filter(Boolean);
+}
+function getLikelyIdColumns(preview) {
+    const stats = preview.column_stats ?? [];
+    const totalRows = Number(preview.total_rows ?? 0);
+    if (totalRows <= 0)
+        return [];
+    return stats
+        .filter((stat) => stat.is_numeric !== false)
+        .filter((stat) => {
+        const mn = Number(stat.min);
+        const mx = Number(stat.max);
+        const colName = String(stat.column ?? "").toLowerCase();
+        const nameHint = /^(id|index|instant|row_?num|serial|record|obs)$/i.test(colName)
+            || colName.endsWith("_id")
+            || colName.startsWith("id_");
+        return ((mn === 0 || mn === 1) &&
+            mx >= totalRows * 0.9 &&
+            mx <= totalRows * 1.1 &&
+            Number(stat.null_count ?? 0) === 0 &&
+            nameHint);
+    })
+        .map((stat) => String(stat.column ?? ""))
+        .filter(Boolean);
+}
+function getRecommendedTrainColumns(preview, analyze) {
+    const recommendations = analyze.recommendations ?? {};
+    const recommended = (recommendations.train ?? []).filter(Boolean);
+    if (recommended.length > 0)
+        return recommended;
+    const numeric = getNumericColumns(preview);
+    const likelyId = new Set(getLikelyIdColumns(preview));
+    return numeric.filter((column) => !likelyId.has(column));
+}
+function getEpochFields(params) {
+    const epochs = params.epochs;
+    if (Array.isArray(epochs) && epochs.length >= 2) {
+        return {
+            ordering: String(epochs[0] ?? ""),
+            convergence: String(epochs[1] ?? ""),
+        };
+    }
+    if (typeof epochs === "number") {
+        return {
+            ordering: String(epochs),
+            convergence: "",
+        };
+    }
+    return { ordering: "", convergence: "" };
+}
+async function fetchPreparePrompt(datasetId) {
+    try {
+        const data = (await apiCall("GET", `/v1/docs/prepare_training?dataset_id=${datasetId}`));
+        if (typeof data.prompt === "string" && data.prompt.trim()) {
+            return data.prompt.trim();
+        }
+    }
+    catch {
+        // Best effort only.
+    }
+    return null;
+}
+function summarizePrompt(promptText) {
+    if (!promptText)
+        return [];
+    return promptText
+        .split(/\n+/)
+        .map((line) => line.replace(/^[-*]\s*/, "").trim())
+        .filter((line) => line.length > 0)
+        .slice(0, 4);
+}
+function buildWarnings(preview, selectedColumns, params, analyze) {
+    const warnings = [];
+    const stats = preview.column_stats ?? [];
+    const statByColumn = new Map(stats.map((stat) => [String(stat.column ?? ""), stat]));
+    for (const column of selectedColumns) {
+        const stat = statByColumn.get(column);
+        if (!stat)
+            continue;
+        if (stat.is_numeric === false) {
+            warnings.push(`${column} is not numeric in preview and should not be used directly for training.`);
+        }
+        if (Number(stat.null_count ?? 0) > 0) {
+            warnings.push(`${column} has ${stat.null_count} null values. Training columns must not contain missing values.`);
+        }
+    }
+    const totalRows = Number(preview.total_rows ?? 0);
+    const grid = params.grid;
+    if (grid && totalRows > 0 && grid[0] * grid[1] > totalRows * 0.75) {
+        warnings.push(`Grid ${grid[0]}×${grid[1]} may be large for ${totalRows} rows, which can create many dead nodes.`);
+    }
+    const recommendations = analyze.recommendations ?? {};
+    const consideredDrop = recommendations.consider_dropping ?? [];
+    const overlappingDrop = consideredDrop.filter((column) => selectedColumns.includes(column));
+    if (overlappingDrop.length > 0) {
+        warnings.push(`Some selected columns are highly correlated and may be redundant: ${overlappingDrop.join(", ")}.`);
+    }
+    const rawCategoricals = stats
+        .filter((stat) => stat.is_numeric === false)
+        .map((stat) => String(stat.column ?? ""))
+        .filter(Boolean);
+    if (rawCategoricals.length > 0) {
+        const shown = rawCategoricals.slice(0, 5).join(", ");
+        const suffix = rawCategoricals.length > 5 ? ", ..." : "";
+        warnings.push(`Raw categorical/text columns detected: ${shown}${suffix}. Exclude them by default or use baseline categorical_features explicitly.`);
+    }
+    return warnings;
+}
+function buildRecommendations(analyze, guidanceText, preparePrompt) {
+    const recommendations = [];
+    const dataRec = analyze.recommendations ?? {};
+    if ((dataRec.project_later ?? []).length > 0) {
+        recommendations.push(`Project later after training: ${(dataRec.project_later ?? []).join(", ")}.`);
+    }
+    if ((dataRec.low_variance ?? []).length > 0) {
+        recommendations.push(`Low-variance columns can usually be excluded: ${(dataRec.low_variance ?? []).join(", ")}.`);
+    }
+    for (const line of guidanceText.split("\n")) {
+        const trimmed = line.replace(/^-\s*/, "").trim();
+        if (trimmed && !trimmed.startsWith("Parameter guidance")) {
+            recommendations.push(trimmed);
+        }
+        if (recommendations.length >= 4)
+            break;
+    }
+    recommendations.push(...summarizePrompt(preparePrompt));
+    return [...new Set(recommendations)].slice(0, 6);
+}
+async function buildTrainingPrepPayload(datasetId, input) {
+    const [preview, analyze, presets, guidanceText, preparePrompt] = await Promise.all([
+        apiCall("GET", `/v1/datasets/${datasetId}/preview?n_rows=5`),
+        apiCall("GET", `/v1/datasets/${datasetId}/analyze`),
+        fetchTrainingPresets().catch(() => ({})),
+        fetchTrainingGuidanceFromApi().catch(() => "No training guidance available."),
+        fetchPreparePrompt(datasetId),
+    ]);
+    const selectedColumns = input.columns?.length
+        ? input.columns
+        : getRecommendedTrainColumns(preview, analyze);
+    const resolvedInput = { ...input, columns: selectedColumns };
+    const { params } = buildTrainMapParams(resolvedInput, presets);
+    const review = storeTrainingReview(datasetId, params, "train_map");
+    const recommendations = analyze.recommendations ?? {};
+    const projectLater = recommendations.project_later ?? [];
+    const transforms = Object.entries(params.transforms ?? {})
+        .map(([feature, transform]) => `${feature}: ${transform}`);
+    if (params.auto_log_transforms === true) {
+        transforms.push("Auto log transforms: enabled");
+    }
+    const cyclic = (params.cyclic_features ?? [])
+        .map((feature) => `${feature.feature} (period ${feature.period})`);
+    const temporal = (params.temporal_features ?? [])
+        .map((feature) => {
+        const columns = feature.columns ?? [];
+        const extract = feature.extract ?? [];
+        return `${columns.join(" + ")} -> ${extract.join(", ")}`;
+    });
+    const epochs = getEpochFields(params);
+    const grid = params.grid ?? [];
+    const warnings = buildWarnings(preview, selectedColumns, params, analyze);
+    const recommendationLines = buildRecommendations(analyze, guidanceText, preparePrompt);
+    const datasetName = String(preview.name ?? datasetId);
+    const sections = [
+        {
+            label: "Variables",
+            items: selectedColumns.length > 0 ? selectedColumns : ["No variables selected yet."],
+        },
+        {
+            label: "Project Later",
+            items: projectLater.length > 0 ? projectLater : ["None"],
+        },
+        {
+            label: "Transformations",
+            items: transforms.length > 0 ? transforms : ["None"],
+        },
+        {
+            label: "Encodings",
+            items: [...cyclic, ...temporal].length > 0 ? [...cyclic, ...temporal] : ["None"],
+        },
+        {
+            label: "Hyperparameters",
+            items: [
+                `Model: ${String(params.model ?? "SOM")}`,
+                `Grid: ${grid.length >= 2 ? `${grid[0]}×${grid[1]}` : "auto"}`,
+                `Epochs: ${epochs.ordering || "auto"}${epochs.convergence ? ` + ${epochs.convergence}` : ""}`,
+                `Backend: ${String(params.backend ?? "auto")}`,
+                `Normalize: ${Array.isArray(params.normalize) ? params.normalize.join(", ") : String(params.normalize ?? "auto")}`,
+                `Output: ${String(params.output_format ?? "png")}`,
+            ],
+        },
+    ];
+    const port = getVizPort();
+    const standaloneUrl = port ? `http://localhost:${port}/viz/training-prep?mode=standalone&review_token=${review.reviewToken}` : undefined;
+    const payload = {
+        type: "training-prep",
+        datasetId,
+        datasetName,
+        reviewId: review.reviewId,
+        reviewToken: review.reviewToken,
+        reviewExpiresAt: new Date(review.expiresAt).toISOString(),
+        selectedColumns,
+        suggestedProjectionColumns: projectLater,
+        warnings,
+        recommendations: recommendationLines,
+        sections,
+        editable: {
+            values: {
+                preset: input.preset,
+                backend: String(input.backend ?? params.backend ?? "auto"),
+                outputFormat: String(input.output_format ?? params.output_format ?? "png"),
+                model: String(input.model ?? params.model ?? "SOM"),
+                gridX: grid.length >= 2 ? String(grid[0]) : "",
+                gridY: grid.length >= 2 ? String(grid[1]) : "",
+                epochsOrdering: epochs.ordering,
+                epochsConvergence: epochs.convergence,
+            },
+            options: {
+                presetOptions: Object.keys(presets).map((value) => ({ value, label: value.replace("_", " ") })),
+                backendOptions: [
+                    { value: "auto", label: "Auto" },
+                    { value: "cpu", label: "CPU" },
+                    { value: "gpu", label: "GPU" },
+                    { value: "gpu_graphs", label: "GPU Graphs" },
+                ],
+                outputFormatOptions: [
+                    { value: "png", label: "PNG" },
+                    { value: "pdf", label: "PDF" },
+                    { value: "svg", label: "SVG" },
+                ],
+                modelOptions: [
+                    { value: "SOM", label: "SOM" },
+                    { value: "RSOM", label: "RSOM" },
+                    { value: "SOM-SOFT", label: "SOM-SOFT" },
+                    { value: "RSOM-SOFT", label: "RSOM-SOFT" },
+                ],
+            },
+        },
+        draftArgs: {
+            ...resolvedInput,
+            periodic: params.periodic,
+            normalize: params.normalize,
+            columns: selectedColumns,
+            output_format: params.output_format,
+        },
+        summaryLines: [
+            `Dataset: ${datasetName}`,
+            `Variables: ${selectedColumns.length > 0 ? selectedColumns.join(", ") : "Not selected"}`,
+            `Grid: ${grid.length >= 2 ? `${grid[0]}×${grid[1]}` : "auto"}`,
+            `Model: ${String(params.model ?? "SOM")} | Backend: ${String(params.backend ?? "auto")} | Output: ${String(params.output_format ?? "png")}`,
+        ],
+        standaloneUrl,
+    };
+    attachTrainingReviewPayload(review.reviewToken, payload);
+    return payload;
+}
+function buildTrainingPrepContent(payload) {
+    const content = [
+        {
+            type: "text",
+            text: [
+                `Training prep ready for ${payload.datasetName} (${payload.datasetId}).`,
+                `Review ID: ${payload.reviewId}`,
+                ...payload.summaryLines,
+                payload.warnings.length > 0 ? `Warnings: ${payload.warnings.join(" | ")}` : "",
+            ].filter(Boolean).join("\n"),
+        },
+    ];
+    if (!getClientSupportsMcpApps() && payload.standaloneUrl) {
+        content.push({
+            type: "text",
+            text: `Interactive review: ${payload.standaloneUrl}\nOpen this URL in your browser to review and submit the prepared job.`,
+        });
+    }
+    return content;
+}
+export function registerTrainingPrepTools(server) {
+    const trainPrepSchema = {
+        dataset_id: z.string().describe("Dataset ID to prepare for training"),
+        preset: z.enum(["quick", "standard", "refined", "high_res"]).optional(),
+        grid_x: z.number().int().optional(),
+        grid_y: z.number().int().optional(),
+        epochs: z.union([z.number().int(), z.array(z.number().int()).length(2)]).optional(),
+        model: z.enum(["SOM", "RSOM", "SOM-SOFT", "RSOM-SOFT"]).optional(),
+        periodic: z.boolean().optional().default(true),
+        columns: z.array(z.string()).optional(),
+        cyclic_features: z.array(z.object({
+            feature: z.string(),
+            period: z.number(),
+        })).optional(),
+        temporal_features: z.array(z.object({
+            columns: z.array(z.string()),
+            format: z.string(),
+            extract: z.array(z.enum(["hour_of_day", "day_of_year", "month", "day_of_week", "minute_of_hour"])),
+            cyclic: z.boolean().default(true),
+            separator: z.string().optional(),
+        })).optional(),
+        feature_weights: z.record(z.number()).optional(),
+        transforms: z.record(z.enum(["log", "log1p", "log10", "sqrt", "square", "abs", "invert", "rank", "none"])).optional(),
+        auto_log_transforms: z.boolean().optional().default(false),
+        normalize: z.union([z.enum(["all", "auto", "mad", "sigmoidal"]), z.array(z.string())]).optional().default("auto"),
+        batch_size: z.number().int().optional(),
+        backend: z.enum(["auto", "cpu", "gpu", "gpu_graphs"]).optional().default("auto"),
+        output_format: z.enum(["png", "pdf", "svg"]).optional().default("png"),
+        row_range: z.tuple([z.number().int().min(1), z.number().int().min(1)]).optional(),
+    };
+    registerAppTool(server, "training_prep", {
+        title: "Training Preparation",
+        description: "Prepare a training job before submission. Opens an inline review UI showing variables, transforms, encodings, and effective hyperparameters with a guarded submit step.",
+        inputSchema: trainPrepSchema,
+        _meta: { ui: { resourceUri: TRAINING_PREP_URI } },
+    }, async ({ dataset_id, ...args }) => {
+        const payload = await buildTrainingPrepPayload(dataset_id, args);
+        return structuredTextResult(payload, undefined, buildTrainingPrepContent(payload));
+    });
+    server.tool("submit_prepared_training", "Submit a previously reviewed training-prep configuration. Requires an unexpired review token and explicit confirmation.", {
+        review_token: z.string().describe("Review token returned inside training_prep structured content."),
+        explicit_confirm: z.boolean().describe("Must be true to submit the reviewed training job."),
+    }, async ({ review_token, explicit_confirm }) => {
+        if (!explicit_confirm) {
+            throw new Error("submit_prepared_training requires explicit_confirm=true.");
+        }
+        const review = getTrainingReview(review_token);
+        if (!review) {
+            throw new Error("Review token is missing, expired, or already used. Re-open training_prep and confirm again.");
+        }
+        const data = (await apiCall("POST", "/v1/jobs", {
+            dataset_id: review.datasetId,
+            params: review.params,
+        }));
+        consumeTrainingReview(review_token);
+        const jobId = String(data.id ?? "");
+        return structuredTextResult({
+            type: "prepared-training-submitted",
+            datasetId: review.datasetId,
+            jobId,
+            message: `Training job submitted from reviewed prep. Poll with jobs(action=status, job_id="${jobId}").`,
+        }, `Training job submitted from reviewed prep. Job ID: ${jobId}\nPoll with jobs(action=status, job_id="${jobId}") until complete, then use results(action=get, job_id="${jobId}").`);
+    });
+}
+//# sourceMappingURL=training_prep.js.map

package/dist/tools/training_prep.js.map

@@ -0,0 +1 @@
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package/dist/tools/training_review_store.d.ts

@@ -0,0 +1,17 @@
+type TrainAction = "train_map";
+export interface StoredTrainingReview {
+    reviewId: string;
+    reviewToken: string;
+    datasetId: string;
+    trainAction: TrainAction;
+    params: Record<string, unknown>;
+    payload?: Record<string, unknown>;
+    createdAt: number;
+    expiresAt: number;
+}
+export declare function storeTrainingReview(datasetId: string, params: Record<string, unknown>, trainAction?: TrainAction): StoredTrainingReview;
+export declare function attachTrainingReviewPayload(reviewToken: string, payload: Record<string, unknown>): void;
+export declare function getTrainingReview(reviewToken: string): StoredTrainingReview | null;
+export declare function consumeTrainingReview(reviewToken: string): StoredTrainingReview | null;
+export {};
+//# sourceMappingURL=training_review_store.d.ts.map

package/dist/tools/training_review_store.d.ts.map

@@ -0,0 +1 @@
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package/dist/tools/training_review_store.js

@@ -0,0 +1,54 @@
+const REVIEW_TTL_MS = 15 * 60 * 1000;
+const reviews = new Map();
+function createToken() {
+    return `${Math.random().toString(36).slice(2, 10)}${Math.random().toString(36).slice(2, 10)}`;
+}
+function createReviewId() {
+    return Math.random().toString(36).slice(2, 10);
+}
+function pruneExpired() {
+    const now = Date.now();
+    for (const [token, review] of reviews.entries()) {
+        if (review.expiresAt <= now) {
+            reviews.delete(token);
+        }
+    }
+}
+export function storeTrainingReview(datasetId, params, trainAction = "train_map") {
+    pruneExpired();
+    const createdAt = Date.now();
+    const review = {
+        reviewId: createReviewId(),
+        reviewToken: createToken(),
+        datasetId,
+        trainAction,
+        params,
+        createdAt,
+        expiresAt: createdAt + REVIEW_TTL_MS,
+    };
+    reviews.set(review.reviewToken, review);
+    return review;
+}
+export function attachTrainingReviewPayload(reviewToken, payload) {
+    pruneExpired();
+    const review = reviews.get(reviewToken);
+    if (!review)
+        return;
+    review.payload = payload;
+}
+export function getTrainingReview(reviewToken) {
+    pruneExpired();
+    const review = reviews.get(reviewToken);
+    if (!review)
+        return null;
+    return review;
+}
+export function consumeTrainingReview(reviewToken) {
+    pruneExpired();
+    const review = reviews.get(reviewToken);
+    if (!review)
+        return null;
+    reviews.delete(reviewToken);
+    return review;
+}
+//# sourceMappingURL=training_review_store.js.map

package/dist/tools/training_review_store.js.map

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