@barivia/barsom-mcp 0.6.5 → 0.7.0

package/dist/tools/explore_map.js

@@ -1,39 +1,129 @@
 import { z } from "zod";
 import { registerAppTool } from "@modelcontextprotocol/ext-apps/server";
-import { apiCall, tryAttachImage, getClientSupportsMcpApps, getVizPort } from "../shared.js";
-export const MAP_EXPLORER_URI = "ui://barsom/map-explorer";
-export function registerExploreMapTool(server) {
-    registerAppTool(server, "explore_map", {
-        title: "Explore Map",
-        description: "Interactive map explorer dashboard. Opens an inline visualization " +
-            "where you can toggle features, click nodes, and export figures. " +
-            "Use this after results(action=get) for a richer, interactive exploration experience. " +
-            "Falls back to text+image on hosts that don't support MCP Apps.",
-        inputSchema: {
-            job_id: z.string().describe("Job ID of a completed map training job"),
+import { apiCall, getClientSupportsMcpApps, getVizPort, getCaptionForImage, getResultsImagesToFetch, structuredTextResult, tryAttachImage, } from "../shared.js";
+export const RESULTS_EXPLORER_URI = "ui://barsom/results-explorer";
+export const MAP_EXPLORER_URI = RESULTS_EXPLORER_URI;
+function labelForFigure(filename) {
+    const base = filename.replace(/\.(png|pdf|svg)$/i, "");
+    if (base === "combined")
+        return "Combined view";
+    if (base === "umatrix")
+        return "U-matrix";
+    if (base === "hit_histogram")
+        return "Hit histogram";
+    if (base === "learning_curve")
+        return "Learning curve";
+    if (base === "correlation")
+        return "Correlation";
+    if (base.startsWith("component_")) {
+        const feature = base.replace(/^component_\d+_/, "").replace(/_/g, " ");
+        return feature ? `Component: ${feature}` : "Component plane";
+    }
+    return base.replace(/_/g, " ");
+}
+function buildAvailableFigures(jobId, summary) {
+    const jobType = summary.job_type ?? "train_som";
+    const files = (summary.files ?? []).filter((file) => /\.(png|pdf|svg)$/i.test(file));
+    const fallback = getResultsImagesToFetch(jobType, summary, "default", false);
+    const figureFiles = files.length > 0 ? files : fallback;
+    const port = getVizPort();
+    return figureFiles.map((filename) => {
+        const base = filename.replace(/\.(png|pdf|svg)$/i, "");
+        const featureName = base.startsWith("component_")
+            ? base.replace(/^component_\d+_/, "").replace(/_/g, " ")
+            : undefined;
+        const isRaster = /\.(png|jpe?g|gif|webp)$/i.test(filename);
+        return {
+            key: base,
+            label: labelForFigure(filename),
+            filename,
+            kind: base.startsWith("component_") ? "component" : base === "combined" ? "summary" : "diagnostic",
+            featureName,
+            caption: getCaptionForImage(filename) || (!isRaster ? "This figure is available for download, but it is not inline-displayable in this first iteration." : undefined),
+            url: port && isRaster ? `http://localhost:${port}/api/results/${jobId}/image/${filename}` : undefined,
+        };
+    });
+}
+function buildPayload(jobId, data) {
+    const summary = (data.summary ?? {});
+    const figures = buildAvailableFigures(jobId, summary);
+    const grid = summary.grid ?? [];
+    const metrics = [
+        { label: "Grid", value: grid.length >= 2 ? `${grid[0]}×${grid[1]}` : "N/A" },
+        { label: "Model", value: String(summary.model ?? "SOM") },
+        { label: "QE", value: summary.quantization_error != null ? Number(summary.quantization_error).toFixed(4) : "N/A" },
+        { label: "TE", value: summary.topographic_error != null ? Number(summary.topographic_error).toFixed(4) : "N/A" },
+        { label: "Samples", value: String(summary.n_samples ?? "N/A") },
+        { label: "Features", value: String(summary.n_features ?? "N/A") },
+    ];
+    const highlights = [
+        summary.training_duration_seconds != null ? `Training duration: ${summary.training_duration_seconds}s` : "",
+        summary.transforms ? `Transforms: ${Object.entries(summary.transforms).map(([feature, transform]) => `${feature}=${transform}`).join(", ")}` : "",
+        summary.selected_columns ? `Variables: ${summary.selected_columns.join(", ")}` : "",
+    ].filter(Boolean);
+    const port = getVizPort();
+    return {
+        type: "results-explorer",
+        jobId,
+        title: "Results Explorer",
+        subtitle: String(data.label ?? ""),
+        model: String(summary.model ?? "SOM"),
+        gridLabel: grid.length >= 2 ? `${grid[0]}×${grid[1]}` : undefined,
+        metrics,
+        highlights,
+        availableFigures: figures,
+        defaultFigureKey: figures.find((figure) => figure.key === "combined" && figure.url)?.key
+            ?? figures.find((figure) => Boolean(figure.url))?.key
+            ?? figures.find((figure) => figure.key === "combined")?.key
+            ?? figures[0]?.key,
+        standaloneUrl: port ? `http://localhost:${port}/viz/results-explorer?mode=standalone&job_id=${jobId}` : undefined,
+    };
+}
+async function handleResultsExplorer(job_id) {
+    const data = (await apiCall("GET", `/v1/results/${job_id}`));
+    const payload = buildPayload(job_id, data);
+    const summary = (data.summary ?? {});
+    const content = [
+        {
+            type: "text",
+            text: [
+                `Results Explorer ready for job ${job_id}.`,
+                payload.gridLabel ? `Grid: ${payload.gridLabel}` : "",
+                payload.subtitle ? `Label: ${payload.subtitle}` : "",
+                payload.highlights[0] ?? "",
+            ].filter(Boolean).join("\n"),
         },
-        _meta: { ui: { resourceUri: MAP_EXPLORER_URI } },
-    }, async ({ job_id }) => {
-        const data = (await apiCall("GET", `/v1/results/${job_id}`));
-        const summary = (data.summary ?? {});
-        const content = [];
+    ];
+    const defaultFigure = payload.availableFigures.find((figure) => figure.key === payload.defaultFigureKey);
+    if (defaultFigure) {
+        await tryAttachImage(content, job_id, defaultFigure.filename);
+    }
+    else {
+        const ext = summary.output_format ?? "png";
+        await tryAttachImage(content, job_id, `combined.${ext}`);
+    }
+    if (!getClientSupportsMcpApps() && payload.standaloneUrl) {
         content.push({
             type: "text",
-            text: JSON.stringify({
-                job_id,
-                summary,
-                download_urls: data.download_urls,
-            }),
+            text: `Interactive visualization: ${payload.standaloneUrl}\nOpen this URL in your browser for a richer results exploration experience.`,
         });
-        const imgExt = summary.output_format ?? "pdf";
-        await tryAttachImage(content, job_id, `combined.${imgExt}`);
-        if (!getClientSupportsMcpApps() && getVizPort()) {
-            content.push({
-                type: "text",
-                text: `Interactive visualization: http://localhost:${getVizPort()}/viz/map-explorer?mode=standalone&job_id=${job_id}\nOpen this URL in your browser for an interactive exploration experience.`,
-            });
-        }
-        return { content };
-    });
+    }
+    return structuredTextResult(payload, undefined, content);
+}
+export function registerExploreMapTool(server) {
+    const toolConfig = {
+        title: "Results Explorer",
+        description: "Interactive results explorer for a completed map job. Opens a simple responsive view for browsing key metrics and available figures. Falls back to a standalone localhost page when needed.",
+        inputSchema: {
+            job_id: z.string().describe("Job ID of a completed map training job"),
+        },
+        _meta: { ui: { resourceUri: RESULTS_EXPLORER_URI } },
+    };
+    registerAppTool(server, "results_explorer", toolConfig, async ({ job_id }) => handleResultsExplorer(job_id));
+    registerAppTool(server, "explore_map", {
+        ...toolConfig,
+        title: "Results Explorer",
+        description: `${toolConfig.description} This legacy alias remains for compatibility.`,
+    }, async ({ job_id }) => handleResultsExplorer(job_id));
 }
 //# sourceMappingURL=explore_map.js.map

package/dist/tools/explore_map.js.map

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package/dist/tools/inference.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"inference.d.ts","sourceRoot":"","sources":["../../src/tools/inference.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,yCAAyC,CAAC;AAGzE,wBAAgB,qBAAqB,CAAC,MAAM,EAAE,SAAS,GAAG,IAAI,CAqL7D"}
+{"version":3,"file":"inference.d.ts","sourceRoot":"","sources":["../../src/tools/inference.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,yCAAyC,CAAC;AAGzE,wBAAgB,qBAAqB,CAAC,MAAM,EAAE,SAAS,GAAG,IAAI,CAuL7D"}

package/dist/tools/inference.js

@@ -32,9 +32,11 @@ action=report: Returns a report manifest for the given job_id (job must be compl
         rows: z.array(z.record(z.string(), z.number())).optional().describe("action=predict: inline rows to score (max 500). Each object maps feature name → value."),
         colormap: z.string().optional().describe("action=compare: colormap for diff heatmap (default: balance). action=report: n/a."),
         output_format: z.enum(["png", "pdf", "svg"]).optional().default("png").describe("action=compare: output format for heatmap (default: png)"),
-        output_dpi: z.number().int().min(1).max(4).optional().default(2).describe("action=compare: DPI scale (default: 2)"),
+        output_dpi: z.enum(["standard", "retina", "print"]).optional().default("retina").describe("Resolution: standard (1x), retina (2x, default), print (4x)"),
         top_n: z.number().int().min(1).max(50).optional().default(10).describe("action=compare: number of top gained/lost nodes to report (default: 10)"),
     }, async ({ action, job_id, dataset_id, columns, rows, colormap, output_format, output_dpi, top_n }) => {
+        const dpiMap = { standard: 1, retina: 2, print: 4 };
+        const numericDpi = dpiMap[output_dpi ?? "retina"] ?? 2;
         if (action === "predict") {
             if (!dataset_id && !rows)
                 throw new Error("inference(predict) requires dataset_id or rows");
@@ -85,7 +87,7 @@ action=report: Returns a report manifest for the given job_id (job must be compl
         if (action === "compare") {
             if (!dataset_id)
                 throw new Error("inference(compare) requires dataset_id (dataset B)");
-            const body = { dataset_id, output_format, output_dpi, top_n };
+            const body = { dataset_id, output_format, output_dpi: numericDpi, top_n };
             if (colormap)
                 body.colormap = colormap;
             const data = (await apiCall("POST", `/v1/results/${job_id}/compare_datasets`, body));
@@ -117,7 +119,7 @@ action=report: Returns a report manifest for the given job_id (job must be compl
                 throw new Error("inference(project_columns) requires dataset_id");
             if (!columns || columns.length === 0)
                 throw new Error("inference(project_columns) requires columns (non-empty array of column names)");
-            const body = { dataset_id, columns, output_format, output_dpi };
+            const body = { dataset_id, columns, output_format, output_dpi: numericDpi };
             if (colormap)
                 body.colormap = colormap;
             const data = (await apiCall("POST", `/v1/results/${job_id}/project_columns`, body));

package/dist/tools/inference.js.map

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package/dist/tools/jobs.d.ts

@@ -1,4 +1,71 @@
 import type { McpServer } from "@modelcontextprotocol/sdk/server/mcp.js";
-export declare const JOBS_DESCRIPTION_BASE = "Manage and inspect jobs.\n\n| Action | Use when |\n|--------|----------|\n| status | Polling after any async job submission \u2014 call every 10\u201315s |\n| list | Finding job IDs, checking what is pending/completed, reviewing hyperparameters. Response includes job_type (train_map, enrich, report, recolor, project, transition_flow, compare, predict) to filter or display. |\n| compare | Picking the best training run from a set of completed jobs |\n| train_map | Submitting a new map training job \u2014 returns job_id for polling |\n| cancel | Stopping a running or pending job to free the worker |\n| delete | Permanently removing a job and all its S3 result files |\n\nFor parameter hints (grid, epochs, batch, model, periodic), call the **training_guidance** tool or use the **prepare_training** prompt before train_map.\n\nASYNC POLLING PROTOCOL (action=status):\n- Poll every 10-15 seconds. Do NOT poll faster \u2014 it wastes context.\n- Progress increases through phases (ordering then convergence for map training). Other job types may use different phase logic.\n- For large grids (40\u00D740+), do not assume failure before 3 minutes on CPU.\n- Wait for status \"completed\" before calling results(action=get).\n- Map training typical times: 10\u00D710 ~30s | 20\u00D720 ~3\u20135 min | 40\u00D740 ~15\u201330 min.\n\nESCALATION (action=status):\n- completed \u2192 call results(action=get) to retrieve the map and metrics\n- failed \u2192 error message and optional failure_stage (e.g. preprocessing, training, metrics, visualization, upload) indicate which phase broke:\n  - memory/allocation error: reduce batch_size or grid size and retrain\n  - column missing: verify with datasets(action=preview)\n  - NaN error: user must clean the dataset\n\naction=train_map: Submits a training job. Returns job_id \u2014 poll with jobs(action=status, job_id=...).\n  Presets: quick | standard | refined | high_res \u2014 use preset=... for grid/epochs/batch defaults; call training_guidance for details.\n  Presets refined/high_res may use GPU. On CPU-only hosts pass backend=cpu. API expects strings \"cpu\" | \"gpu\" | \"gpu_graphs\" (no colon). Future backends (e.g. non-CUDA) may be added under the same contract.\n  normalize: \"auto\" (default) = scale only non-cyclic features; \"all\" = scale every feature. Use \"auto\" when using cyclic_features.\naction=compare: Returns a metrics table (QE, TE, explained variance, silhouette) for 2+ jobs.\naction=cancel: Not instant \u2014 worker checks between phases. Expect up to 30s delay.\naction=delete: WARNING \u2014 job ID will no longer work with results or any other tool.";
+export declare const JOBS_DESCRIPTION_BASE = "Manage and inspect jobs.\n\n| Action | Use when |\n|--------|----------|\n| status | Polling after any async job submission \u2014 call every 10\u201315s |\n| list | Finding job IDs, checking what is pending/completed, reviewing hyperparameters. Response includes job_type (train_map, enrich, report, recolor, project, transition_flow, compare, predict) to filter or display. |\n| compare | Picking the best training run from a set of completed jobs |\n| train_map | Submitting a new map training job \u2014 returns job_id for polling |\n| train_siom_map | Submitting a self-interacting map training job \u2014 same map flow with SIOM coverage control |\n| train_floop_chain | Submitting a FLooP-SIOM principal-curve training job |\n| cancel | Stopping a running or pending job to free the worker |\n| delete | Permanently removing a job and all its S3 result files |\n\nFor parameter hints (grid, epochs, batch, model, periodic), call the **training_guidance** tool or use the **prepare_training** prompt before train_map.\n\nASYNC POLLING PROTOCOL (action=status):\n- Poll every 10-15 seconds. Do NOT poll faster \u2014 it wastes context.\n- Progress increases through phases (ordering then convergence for map training). Other job types may use different phase logic.\n- For large grids (40\u00D740+), do not assume failure before 3 minutes on CPU.\n- Wait for status \"completed\" before calling results(action=get).\n- Map training typical times: 10\u00D710 ~30s | 20\u00D720 ~3\u20135 min | 40\u00D740 ~15\u201330 min.\n\nESCALATION (action=status):\n- completed \u2192 call results(action=get) to retrieve the map and metrics\n- failed \u2192 error message and optional failure_stage (e.g. preprocessing, training, metrics, visualization, upload) indicate which phase broke:\n  - memory/allocation error: reduce batch_size or grid size and retrain\n  - column missing: verify with datasets(action=preview)\n  - NaN error: user must clean the dataset\n\naction=train_map / train_siom_map: Submits a grid-map training job. Returns job_id \u2014 poll with jobs(action=status, job_id=...).\n  Presets: quick | standard | refined | high_res \u2014 use preset=... for grid/epochs/batch defaults; call training_guidance for details.\n  Presets refined/high_res may use GPU. On CPU-only hosts pass backend=cpu. API expects strings \"cpu\" | \"gpu\" | \"gpu_graphs\" (no colon). Future backends (e.g. non-CUDA) may be added under the same contract.\n  normalize: \"auto\" (default) = scale only non-cyclic features; \"all\" = scale every feature. Use \"auto\" when using cyclic_features.\naction=train_floop_chain: Submits a FLooP-SIOM job. Use when you want a growing chain/free-topology manifold instead of a fixed hex grid. Key params: topology=free|chain, max_nodes, effort, gamma, siom_decay.\naction=compare: Returns a metrics table (QE, TE, explained variance, silhouette) for 2+ jobs.\naction=cancel: Not instant \u2014 worker checks between phases. Expect up to 30s delay.\naction=delete: WARNING \u2014 job ID will no longer work with results or any other tool.";
+export type TrainingPreset = {
+    grid: number[];
+    epochs: number[];
+    batch_size: number;
+    backend?: string;
+};
+export type TrainMapLikeArgs = {
+    preset?: "quick" | "standard" | "refined" | "high_res";
+    grid_x?: number;
+    grid_y?: number;
+    epochs?: number | number[];
+    model?: "SOM" | "RSOM" | "SOM-SOFT" | "RSOM-SOFT";
+    periodic?: boolean;
+    columns?: string[];
+    cyclic_features?: Array<{
+        feature: string;
+        period: number;
+    }>;
+    temporal_features?: Array<{
+        columns: string[];
+        format: string;
+        extract: Array<"hour_of_day" | "day_of_year" | "month" | "day_of_week" | "minute_of_hour">;
+        cyclic?: boolean;
+        separator?: string;
+    }>;
+    feature_weights?: Record<string, number>;
+    transforms?: Record<string, "log" | "log1p" | "log10" | "sqrt" | "square" | "abs" | "invert" | "rank" | "none">;
+    auto_log_transforms?: boolean;
+    time_delay_embeddings?: Array<{
+        feature: string;
+        lags: number[];
+    }>;
+    categorical_features?: Array<{
+        feature: string;
+        categories: string[];
+        weight: number;
+    }>;
+    mca_features?: Array<{
+        target_features: string[];
+        n_components: number;
+    }>;
+    hierarchical_features?: Array<{
+        feature: string;
+        categories: string[];
+        distance_matrix: number[][];
+        n_components: number;
+    }>;
+    normalize?: "all" | "auto" | "mad" | "sigmoidal" | string[];
+    sigma_f?: number;
+    learning_rate?: number | {
+        ordering: [number, number];
+        convergence: [number, number];
+    };
+    batch_size?: number;
+    quality_metrics?: "fast" | "standard" | "full" | string[];
+    backend?: "auto" | "cpu" | "gpu" | "gpu_graphs";
+    output_format?: "png" | "pdf" | "svg";
+    output_dpi?: "standard" | "retina" | "print";
+    colormap?: string;
+    row_range?: [number, number];
+};
+export declare function fetchTrainingPresets(): Promise<Record<string, TrainingPreset>>;
+export declare function buildTrainMapParams(args: TrainMapLikeArgs, presets: Record<string, TrainingPreset>): {
+    params: Record<string, unknown>;
+    paramSummary: string;
+    effectiveGrid?: number[];
+};
 export declare function registerJobsTool(server: McpServer, description: string): void;
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package/dist/tools/jobs.d.ts.map

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