@axiomatic-labs/claudeflow 2.9.78 → 2.9.80

package/lib/install.js

@@ -268,55 +268,71 @@ function installAnalysisTools() {
     }
   }
 
-  // 3. Serena MCP
-  if (hasUv) {
-    let serenaConfigured = false;
-    try {
-      const mcpList = execSync('claude mcp list', { stdio: 'pipe', encoding: 'utf8', timeout: 10000 });
-      serenaConfigured = mcpList.includes('serena');
-    } catch {
-      // claude CLI not available or mcp list failed — skip Serena
-      ui.warn('Could not check MCP servers — Serena setup skipped');
-      return;
-    }
+  // 3. Write MCP servers directly to .mcp.json (more reliable than claude mcp add)
+  configureMcpServers(hasUv);
+}
+
+// Write Serena and context7 MCP configs directly to .mcp.json.
+// This is more reliable than `claude mcp add` which can misparse flags.
+function configureMcpServers(hasUv) {
+  const cwd = process.cwd();
+  const mcpPath = path.join(cwd, '.mcp.json');
+
+  // Read existing .mcp.json or start fresh
+  let mcpConfig = { mcpServers: {} };
+  try {
+    const existing = fs.readFileSync(mcpPath, 'utf8');
+    mcpConfig = JSON.parse(existing);
+    if (!mcpConfig.mcpServers) mcpConfig.mcpServers = {};
+  } catch {
+    // File doesn't exist or is invalid — start fresh
+  }
+
+  let changed = false;
 
-    if (serenaConfigured) {
+  // Serena MCP (requires uv)
+  if (hasUv) {
+    if (mcpConfig.mcpServers.serena) {
       ui.success('Serena MCP already configured');
     } else {
       ui.step('Adding Serena MCP for semantic code analysis...');
-      try {
-        const projectPath = process.cwd();
-        const uvBin = resolveUvBin();
-        execSync(
-          `claude mcp add serena -- ${uvBin} -p 3.13 --from git+https://github.com/oraios/serena serena start-mcp-server --context claude-code --project "${projectPath}"`,
-          { stdio: 'pipe', timeout: 30000 }
-        );
-        ui.success('Serena MCP configured');
-      } catch {
-        ui.warn('Serena MCP setup failed — code exploration will use Grep fallback');
-      }
+      const uvBin = resolveUvBin();
+      mcpConfig.mcpServers.serena = {
+        type: 'stdio',
+        command: 'uvx',
+        args: [
+          '--python', '3.13',
+          '--from', 'git+https://github.com/oraios/serena',
+          'serena', 'start-mcp-server',
+          '--context', 'claude-code',
+          '--project', cwd,
+        ],
+      };
+      changed = true;
+      ui.success('Serena MCP configured');
     }
   }
 
-  // 4. context7 MCP (library documentation for research)
-  let context7Configured = false;
-  try {
-    const mcpList = execSync('claude mcp list', { stdio: 'pipe', encoding: 'utf8', timeout: 10000 });
-    context7Configured = mcpList.includes('context7');
-  } catch {}
-
-  if (context7Configured) {
+  // context7 MCP
+  if (mcpConfig.mcpServers.context7) {
     ui.success('context7 MCP already configured');
   } else {
     ui.step('Adding context7 MCP for library documentation...');
+    mcpConfig.mcpServers.context7 = {
+      type: 'stdio',
+      command: 'npx',
+      args: ['-y', '@upstash/context7-mcp@latest'],
+    };
+    changed = true;
+    ui.success('context7 MCP configured');
+  }
+
+  // Write .mcp.json if anything changed
+  if (changed) {
     try {
-      execSync('claude mcp add context7 -- npx -y @upstash/context7-mcp@latest', {
-        stdio: 'pipe',
-        timeout: 30000,
-      });
-      ui.success('context7 MCP configured');
-    } catch {
-      ui.warn('context7 setup failed — research will use WebSearch fallback');
+      fs.writeFileSync(mcpPath, JSON.stringify(mcpConfig, null, 2) + '\n');
+    } catch (e) {
+      ui.warn(`Could not write .mcp.json: ${e.message}`);
     }
   }
 }

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@axiomatic-labs/claudeflow",
-  "version": "2.9.78",
+  "version": "2.9.80",
   "description": "Claudeflow — AI-powered development toolkit for Claude Code. Skills, agents, hooks, and quality gates that ship production apps.",
   "bin": {
     "claudeflow": "./bin/cli.js"