@axiomatic-labs/claudeflow 2.12.263 → 2.12.265

package/lib/install.js

@@ -104,7 +104,10 @@ async function run() {
     } catch {
       // File doesn't exist or is invalid JSON — start fresh with empty servers
     }
+    // Spread first so user-added fields (env with API keys, cwd, etc.) survive.
+    // Only command/args are CLI-canonical and get overridden.
     mcpConfig.mcpServers.playwright = {
+      ...mcpConfig.mcpServers.playwright,
       command: "npx",
       args: [
         "@playwright/mcp@latest",
@@ -598,7 +601,9 @@ function configureMcpServers(hasUv) {
         '--project-from-cwd',
       ];
     ui.step(mcpConfig.mcpServers.serena ? 'Refreshing Serena MCP configuration...' : 'Adding Serena MCP for semantic code analysis...');
+    // Spread first so user-added fields (env with API keys, cwd, etc.) survive.
     mcpConfig.mcpServers.serena = {
+      ...mcpConfig.mcpServers.serena,
       type: 'stdio',
       command: serenaCommand,
       args: serenaArgs,
@@ -609,7 +614,9 @@ function configureMcpServers(hasUv) {
 
   // context7 MCP
   ui.step(mcpConfig.mcpServers.context7 ? 'Refreshing context7 MCP configuration...' : 'Adding context7 MCP for library documentation...');
+  // Spread first so user-added fields (env with API keys, cwd, etc.) survive.
   mcpConfig.mcpServers.context7 = {
+    ...mcpConfig.mcpServers.context7,
     type: 'stdio',
     command: 'npx',
     args: ['-y', '@upstash/context7-mcp@latest'],
@@ -639,8 +646,19 @@ function commandExists(cmd) {
 }
 
 function indexSerenaProject(projectRoot) {
-  ui.step('Indexing project for Serena...');
   const statusPath = path.join(projectRoot, '.claudeflow', 'tmp', 'tooling', 'serena-status.json');
+
+  // Idempotent reinstall: skip indexing if a previous install already indexed
+  // the project successfully. To force a reindex, delete the marker file.
+  try {
+    const existing = JSON.parse(fs.readFileSync(statusPath, 'utf8'));
+    if (existing && existing.indexed === true) {
+      ui.success('Serena project index already present (delete .claudeflow/tmp/tooling/serena-status.json to force reindex)');
+      return;
+    }
+  } catch {}
+
+  ui.step('Indexing project for Serena...');
   const attempts = [
     { command: 'uvx', args: ['--from', SERENA_REPO, 'serena', 'project', 'index', projectRoot] },
     { command: 'uv', args: ['run', '--with', SERENA_REPO, 'serena', 'project', 'index', projectRoot] },

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@axiomatic-labs/claudeflow",
-  "version": "2.12.263",
+  "version": "2.12.265",
   "description": "Claudeflow — AI-powered development toolkit for Claude Code. Skills, agents, hooks, and quality gates that ship production apps.",
   "bin": {
     "claudeflow": "./bin/cli.js"