@aws-sdk/client-omics 3.921.0 → 3.925.0

package/dist-cjs/index.js

@@ -386,6 +386,7 @@ const WorkflowEngine = {
     CWL: "CWL",
     NEXTFLOW: "NEXTFLOW",
     WDL: "WDL",
+    WDL_LENIENT: "WDL_LENIENT",
 };
 const StorageType = {
     DYNAMIC: "DYNAMIC",

package/dist-es/models/models_0.js

@@ -266,6 +266,7 @@ export const WorkflowEngine = {
     CWL: "CWL",
     NEXTFLOW: "NEXTFLOW",
     WDL: "WDL",
+    WDL_LENIENT: "WDL_LENIENT",
 };
 export const StorageType = {
     DYNAMIC: "DYNAMIC",

package/dist-types/auth/httpAuthSchemeProvider.d.ts

@@ -26,7 +26,7 @@ export interface OmicsHttpAuthSchemeProvider extends HttpAuthSchemeProvider<Omic
  */
 export declare const defaultOmicsHttpAuthSchemeProvider: OmicsHttpAuthSchemeProvider;
 /**
- * @internal
+ * @public
  */
 export interface HttpAuthSchemeInputConfig extends AwsSdkSigV4AuthInputConfig {
     /**

package/dist-types/commands/CancelAnnotationImportJobCommand.d.ts

@@ -27,7 +27,7 @@ declare const CancelAnnotationImportJobCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Cancels an annotation import job.</p>
+ * <important> <p>Amazon Web Services HealthOmics variant stores and annotation stores will no longer be open to new customers starting November 7, 2025. If you would like to use variant stores or annotation stores, sign up prior to that date. Existing customers can continue to use the service as normal. For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/variant-store-availability-change.html"> Amazon Web Services HealthOmics variant store and annotation store availability change</a>.</p> </important> <p>Cancels an annotation import job.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/CancelVariantImportJobCommand.d.ts

@@ -27,7 +27,7 @@ declare const CancelVariantImportJobCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Cancels a variant import job.</p>
+ * <important> <p>Amazon Web Services HealthOmics variant stores and annotation stores will no longer be open to new customers starting November 7, 2025. If you would like to use variant stores or annotation stores, sign up prior to that date. Existing customers can continue to use the service as normal. For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/variant-store-availability-change.html"> Amazon Web Services HealthOmics variant store and annotation store availability change</a>.</p> </important> <p>Cancels a variant import job.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/CreateAnnotationStoreCommand.d.ts

@@ -27,7 +27,7 @@ declare const CreateAnnotationStoreCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Creates an annotation store.</p>
+ * <important> <p>Amazon Web Services HealthOmics variant stores and annotation stores will no longer be open to new customers starting November 7, 2025. If you would like to use variant stores or annotation stores, sign up prior to that date. Existing customers can continue to use the service as normal. For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/variant-store-availability-change.html"> Amazon Web Services HealthOmics variant store and annotation store availability change</a>.</p> </important> <p>Creates an annotation store.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/CreateVariantStoreCommand.d.ts

@@ -27,7 +27,7 @@ declare const CreateVariantStoreCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Creates a variant store.</p>
+ * <important> <p>Amazon Web Services HealthOmics variant stores and annotation stores will no longer be open to new customers starting November 7, 2025. If you would like to use variant stores or annotation stores, sign up prior to that date. Existing customers can continue to use the service as normal. For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/variant-store-availability-change.html"> Amazon Web Services HealthOmics variant store and annotation store availability change</a>.</p> </important> <p>Creates a variant store.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/CreateWorkflowCommand.d.ts

@@ -27,7 +27,7 @@ declare const CreateWorkflowCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Creates a private workflow. Before you create a private workflow, you must create and configure these required resources:</p> <ul> <li> <p> <i>Workflow definition files</i>: Define your workflow in one or more workflow definition files, written in WDL, Nextflow, or CWL. The workflow definition specifies the inputs and outputs for runs that use the workflow. It also includes specifications for the runs and run tasks for your workflow, including compute and memory requirements. The workflow definition file must be in .zip format.</p> </li> <li> <p>(Optional) <i>Parameter template</i>: You can create a parameter template file that defines the run parameters, or Amazon Web Services HealthOmics can generate the parameter template for you.</p> </li> <li> <p> <i>ECR container images</i>: Create container images for the workflow in a private ECR repository, or synchronize images from a supported upstream registry with your Amazon ECR private repository.</p> </li> <li> <p>(Optional) <i>Sentieon licenses</i>: Request a Sentieon license if using the Sentieon software in a private workflow.</p> </li> </ul> <p>For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/creating-private-workflows.html">Creating or updating a private workflow in Amazon Web Services HealthOmics</a> in the <i>Amazon Web Services HealthOmics User Guide</i>.</p>
+ * <p>Creates a private workflow. Before you create a private workflow, you must create and configure these required resources:</p> <ul> <li> <p> <i>Workflow definition file:</i> A workflow definition file written in WDL, Nextflow, or CWL. The workflow definition specifies the inputs and outputs for runs that use the workflow. It also includes specifications for the runs and run tasks for your workflow, including compute and memory requirements. The workflow definition file must be in <code>.zip</code> format. For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/workflow-definition-files.html">Workflow definition files</a> in Amazon Web Services HealthOmics.</p> <ul> <li> <p>You can use Amazon Q CLI to build and validate your workflow definition files in WDL, Nextflow, and CWL. For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/getting-started.html#omics-q-prompts">Example prompts for Amazon Q CLI</a> and the <a href="https://github.com/aws-samples/aws-healthomics-tutorials/tree/main/generative-ai">Amazon Web Services HealthOmics Agentic generative AI tutorial</a> on GitHub.</p> </li> </ul> </li> <li> <p> <i>(Optional) Parameter template file:</i> A parameter template file written in JSON. Create the file to define the run parameters, or Amazon Web Services HealthOmics generates the parameter template for you. For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/parameter-templates.html">Parameter template files for HealthOmics workflows</a>. </p> </li> <li> <p> <i>ECR container images:</i> Create container images for the workflow in a private ECR repository, or synchronize images from a supported upstream registry with your Amazon ECR private repository.</p> </li> <li> <p> <i>(Optional) Sentieon licenses:</i> Request a Sentieon license to use the Sentieon software in private workflows.</p> </li> </ul> <p>For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/creating-private-workflows.html">Creating or updating a private workflow in Amazon Web Services HealthOmics</a> in the <i>Amazon Web Services HealthOmics User Guide</i>.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/DeleteAnnotationStoreCommand.d.ts

@@ -27,7 +27,7 @@ declare const DeleteAnnotationStoreCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Deletes an annotation store.</p>
+ * <important> <p>Amazon Web Services HealthOmics variant stores and annotation stores will no longer be open to new customers starting November 7, 2025. If you would like to use variant stores or annotation stores, sign up prior to that date. Existing customers can continue to use the service as normal. For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/variant-store-availability-change.html"> Amazon Web Services HealthOmics variant store and annotation store availability change</a>.</p> </important> <p>Deletes an annotation store.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/DeleteVariantStoreCommand.d.ts

@@ -27,7 +27,7 @@ declare const DeleteVariantStoreCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Deletes a variant store.</p>
+ * <important> <p>Amazon Web Services HealthOmics variant stores and annotation stores will no longer be open to new customers starting November 7, 2025. If you would like to use variant stores or annotation stores, sign up prior to that date. Existing customers can continue to use the service as normal. For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/variant-store-availability-change.html"> Amazon Web Services HealthOmics variant store and annotation store availability change</a>.</p> </important> <p>Deletes a variant store.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/GetAnnotationImportJobCommand.d.ts

@@ -27,7 +27,7 @@ declare const GetAnnotationImportJobCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Gets information about an annotation import job.</p>
+ * <important> <p>Amazon Web Services HealthOmics variant stores and annotation stores will no longer be open to new customers starting November 7, 2025. If you would like to use variant stores or annotation stores, sign up prior to that date. Existing customers can continue to use the service as normal. For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/variant-store-availability-change.html"> Amazon Web Services HealthOmics variant store and annotation store availability change</a>.</p> </important> <p>Gets information about an annotation import job.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/GetAnnotationStoreCommand.d.ts

@@ -27,7 +27,7 @@ declare const GetAnnotationStoreCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Gets information about an annotation store.</p>
+ * <important> <p>Amazon Web Services HealthOmics variant stores and annotation stores will no longer be open to new customers starting November 7, 2025. If you would like to use variant stores or annotation stores, sign up prior to that date. Existing customers can continue to use the service as normal. For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/variant-store-availability-change.html"> Amazon Web Services HealthOmics variant store and annotation store availability change</a>.</p> </important> <p>Gets information about an annotation store.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/GetVariantImportJobCommand.d.ts

@@ -27,7 +27,7 @@ declare const GetVariantImportJobCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Gets information about a variant import job.</p>
+ * <important> <p>Amazon Web Services HealthOmics variant stores and annotation stores will no longer be open to new customers starting November 7, 2025. If you would like to use variant stores or annotation stores, sign up prior to that date. Existing customers can continue to use the service as normal. For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/variant-store-availability-change.html"> Amazon Web Services HealthOmics variant store and annotation store availability change</a>.</p> </important> <p>Gets information about a variant import job.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/GetVariantStoreCommand.d.ts

@@ -27,7 +27,7 @@ declare const GetVariantStoreCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Gets information about a variant store.</p>
+ * <important> <p>Amazon Web Services HealthOmics variant stores and annotation stores will no longer be open to new customers starting November 7, 2025. If you would like to use variant stores or annotation stores, sign up prior to that date. Existing customers can continue to use the service as normal. For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/variant-store-availability-change.html"> Amazon Web Services HealthOmics variant store and annotation store availability change</a>.</p> </important> <p>Gets information about a variant store.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/ListAnnotationImportJobsCommand.d.ts

@@ -27,7 +27,7 @@ declare const ListAnnotationImportJobsCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Retrieves a list of annotation import jobs.</p>
+ * <important> <p>Amazon Web Services HealthOmics variant stores and annotation stores will no longer be open to new customers starting November 7, 2025. If you would like to use variant stores or annotation stores, sign up prior to that date. Existing customers can continue to use the service as normal. For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/variant-store-availability-change.html"> Amazon Web Services HealthOmics variant store and annotation store availability change</a>.</p> </important> <p>Retrieves a list of annotation import jobs.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/ListAnnotationStoresCommand.d.ts

@@ -27,7 +27,7 @@ declare const ListAnnotationStoresCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Retrieves a list of annotation stores.</p>
+ * <important> <p>Amazon Web Services HealthOmics variant stores and annotation stores will no longer be open to new customers starting November 7, 2025. If you would like to use variant stores or annotation stores, sign up prior to that date. Existing customers can continue to use the service as normal. For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/variant-store-availability-change.html"> Amazon Web Services HealthOmics variant store and annotation store availability change</a>.</p> </important> <p>Retrieves a list of annotation stores.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/ListVariantImportJobsCommand.d.ts

@@ -27,7 +27,7 @@ declare const ListVariantImportJobsCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Retrieves a list of variant import jobs.</p>
+ * <important> <p>Amazon Web Services HealthOmics variant stores and annotation stores will no longer be open to new customers starting November 7, 2025. If you would like to use variant stores or annotation stores, sign up prior to that date. Existing customers can continue to use the service as normal. For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/variant-store-availability-change.html"> Amazon Web Services HealthOmics variant store and annotation store availability change</a>.</p> </important> <p>Retrieves a list of variant import jobs.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/ListVariantStoresCommand.d.ts

@@ -27,7 +27,7 @@ declare const ListVariantStoresCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Retrieves a list of variant stores.</p>
+ * <important> <p>Amazon Web Services HealthOmics variant stores and annotation stores will no longer be open to new customers starting November 7, 2025. If you would like to use variant stores or annotation stores, sign up prior to that date. Existing customers can continue to use the service as normal. For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/variant-store-availability-change.html"> Amazon Web Services HealthOmics variant store and annotation store availability change</a>.</p> </important> <p>Retrieves a list of variant stores.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/StartAnnotationImportJobCommand.d.ts

@@ -27,7 +27,7 @@ declare const StartAnnotationImportJobCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Starts an annotation import job.</p>
+ * <important> <p>Amazon Web Services HealthOmics variant stores and annotation stores will no longer be open to new customers starting November 7, 2025. If you would like to use variant stores or annotation stores, sign up prior to that date. Existing customers can continue to use the service as normal. For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/variant-store-availability-change.html"> Amazon Web Services HealthOmics variant store and annotation store availability change</a>.</p> </important> <p>Starts an annotation import job.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/StartRunCommand.d.ts

@@ -27,7 +27,7 @@ declare const StartRunCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Starts a new run and returns details about the run, or duplicates an existing run. A run is a single invocation of a workflow. If you provide request IDs, Amazon Web Services HealthOmics identifies duplicate requests and starts the run only once. Monitor the progress of the run by calling the <code>GetRun</code> API operation.</p> <p>To start a new run, the following inputs are required:</p> <ul> <li> <p>A service role ARN (<code>roleArn</code>).</p> </li> <li> <p>The run's workflow ID (<code>workflowId</code>, not the <code>uuid</code> or <code>runId</code>).</p> </li> <li> <p>An Amazon S3 location (<code>outputUri</code>) where the run outputs will be saved.</p> </li> <li> <p>All required workflow parameters (<code>parameter</code>), which can include optional parameters from the parameter template. The run cannot include any parameters that are not defined in the parameter template. To see all possible parameters, use the <code>GetRun</code> API operation. </p> </li> <li> <p>For runs with a <code>STATIC</code> (default) storage type, specify the required storage capacity (in gibibytes). A storage capacity value is not required for runs that use <code>DYNAMIC</code> storage.</p> </li> </ul> <p> <code>StartRun</code> can also duplicate an existing run using the run's default values. You can modify these default values and/or add other optional inputs. To duplicate a run, the following inputs are required:</p> <ul> <li> <p>A service role ARN (<code>roleArn</code>).</p> </li> <li> <p>The ID of the run to duplicate (<code>runId</code>).</p> </li> <li> <p>An Amazon S3 location where the run outputs will be saved (<code>outputUri</code>).</p> </li> </ul> <p>To learn more about the optional parameters for <code>StartRun</code>, see <a href="https://docs.aws.amazon.com/omics/latest/dev/starting-a-run.html">Starting a run</a> in the <i>Amazon Web Services HealthOmics User Guide</i>.</p> <p>Use the <code>retentionMode</code> input to control how long the metadata for each run is stored in CloudWatch. There are two retention modes:</p> <ul> <li> <p>Specify <code>REMOVE</code> to automatically remove the oldest runs when you reach the maximum service retention limit for runs. It is recommended that you use the <code>REMOVE</code> mode to initiate major run requests so that your runs do not fail when you reach the limit.</p> </li> <li> <p>The <code>retentionMode</code> is set to the <code>RETAIN</code> mode by default, which allows you to manually remove runs after reaching the maximum service retention limit. Under this setting, you cannot create additional runs until you remove the excess runs.</p> </li> </ul> <p>To learn more about the retention modes, see <a href="https://docs.aws.amazon.com/omics/latest/dev/run-retention.html">Run retention mode</a> in the <i>Amazon Web Services HealthOmics User Guide</i>.</p>
+ * <p>Starts a new run and returns details about the run, or duplicates an existing run. A run is a single invocation of a workflow. If you provide request IDs, Amazon Web Services HealthOmics identifies duplicate requests and starts the run only once. Monitor the progress of the run by calling the <code>GetRun</code> API operation.</p> <p>To start a new run, the following inputs are required:</p> <ul> <li> <p>A service role ARN (<code>roleArn</code>).</p> </li> <li> <p>The run's workflow ID (<code>workflowId</code>, not the <code>uuid</code> or <code>runId</code>).</p> </li> <li> <p>An Amazon S3 location (<code>outputUri</code>) where the run outputs will be saved.</p> </li> <li> <p>All required workflow parameters (<code>parameter</code>), which can include optional parameters from the parameter template. The run cannot include any parameters that are not defined in the parameter template. To see all possible parameters, use the <code>GetRun</code> API operation. </p> </li> <li> <p>For runs with a <code>STATIC</code> (default) storage type, specify the required storage capacity (in gibibytes). A storage capacity value is not required for runs that use <code>DYNAMIC</code> storage.</p> </li> </ul> <p> <code>StartRun</code> can also duplicate an existing run using the run's default values. You can modify these default values and/or add other optional inputs. To duplicate a run, the following inputs are required:</p> <ul> <li> <p>A service role ARN (<code>roleArn</code>).</p> </li> <li> <p>The ID of the run to duplicate (<code>runId</code>).</p> </li> <li> <p>An Amazon S3 location where the run outputs will be saved (<code>outputUri</code>).</p> </li> </ul> <p>To learn more about the optional parameters for <code>StartRun</code>, see <a href="https://docs.aws.amazon.com/omics/latest/dev/starting-a-run.html">Starting a run</a> in the <i>Amazon Web Services HealthOmics User Guide</i>.</p> <p>Use the <code>retentionMode</code> input to control how long the metadata for each run is stored in CloudWatch. There are two retention modes:</p> <ul> <li> <p>Specify <code>REMOVE</code> to automatically remove the oldest runs when you reach the maximum service retention limit for runs. It is recommended that you use the <code>REMOVE</code> mode to initiate major run requests so that your runs do not fail when you reach the limit.</p> </li> <li> <p>The <code>retentionMode</code> is set to the <code>RETAIN</code> mode by default, which allows you to manually remove runs after reaching the maximum service retention limit. Under this setting, you cannot create additional runs until you remove the excess runs.</p> </li> </ul> <p>To learn more about the retention modes, see <a href="https://docs.aws.amazon.com/omics/latest/dev/run-retention.html">Run retention mode</a> in the <i>Amazon Web Services HealthOmics User Guide</i>.</p> <p>You can use Amazon Q CLI to analyze run logs and make performance optimization recommendations. To get started, see the <a href="https://github.com/awslabs/mcp/tree/main/src/aws-healthomics-mcp-server">Amazon Web Services HealthOmics MCP server</a> on GitHub.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/StartVariantImportJobCommand.d.ts

@@ -27,7 +27,7 @@ declare const StartVariantImportJobCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Starts a variant import job.</p>
+ * <important> <p>Amazon Web Services HealthOmics variant stores and annotation stores will no longer be open to new customers starting November 7, 2025. If you would like to use variant stores or annotation stores, sign up prior to that date. Existing customers can continue to use the service as normal. For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/variant-store-availability-change.html"> Amazon Web Services HealthOmics variant store and annotation store availability change</a>.</p> </important> <p>Starts a variant import job.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/UpdateAnnotationStoreCommand.d.ts

@@ -27,7 +27,7 @@ declare const UpdateAnnotationStoreCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Updates an annotation store.</p>
+ * <important> <p>Amazon Web Services HealthOmics variant stores and annotation stores will no longer be open to new customers starting November 7, 2025. If you would like to use variant stores or annotation stores, sign up prior to that date. Existing customers can continue to use the service as normal. For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/variant-store-availability-change.html"> Amazon Web Services HealthOmics variant store and annotation store availability change</a>.</p> </important> <p>Updates an annotation store.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/UpdateVariantStoreCommand.d.ts

@@ -27,7 +27,7 @@ declare const UpdateVariantStoreCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Updates a variant store.</p>
+ * <important> <p>Amazon Web Services HealthOmics variant stores and annotation stores will no longer be open to new customers starting November 7, 2025. If you would like to use variant stores or annotation stores, sign up prior to that date. Existing customers can continue to use the service as normal. For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/variant-store-availability-change.html"> Amazon Web Services HealthOmics variant store and annotation store availability change</a>.</p> </important> <p>Updates a variant store.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/models/models_0.d.ts

@@ -2026,7 +2026,7 @@ export interface RegistryMapping {
     ecrAccountId?: string | undefined;
 }
 /**
- * <p>Use a container registry map to specify mappings between the ECR private repository and one or more upstream registries. For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/workflows-ecr.html">Container images</a> in the <i>Amazon Web Services HealthOmics User Guide</i>. </p>
+ * <p>Use a container registry map to specify mappings between the ECR private repository and one or more upstream registries. For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/workflows-ecr.html">Container images</a> in the <i>Amazon Web Services HealthOmics User Guide</i>.</p>
  * @public
  */
 export interface ContainerRegistryMap {
@@ -2711,6 +2711,7 @@ export declare const WorkflowEngine: {
     readonly CWL: "CWL";
     readonly NEXTFLOW: "NEXTFLOW";
     readonly WDL: "WDL";
+    readonly WDL_LENIENT: "WDL_LENIENT";
 };
 /**
  * @public
@@ -2809,7 +2810,7 @@ export interface CreateWorkflowRequest {
      */
     storageType?: StorageType | undefined;
     /**
-     * <p>(Optional) Use a container registry map to specify mappings between the ECR private repository and one or more upstream registries. For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/workflows-ecr.html">Container images</a> in the <i>Amazon Web Services HealthOmics User Guide</i>. </p>
+     * <p>(Optional) Use a container registry map to specify mappings between the ECR private repository and one or more upstream registries. For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/workflows-ecr.html">Container images</a> in the <i>Amazon Web Services HealthOmics User Guide</i>.</p>
      * @public
      */
     containerRegistryMap?: ContainerRegistryMap | undefined;
@@ -2970,7 +2971,7 @@ export interface CreateWorkflowVersionRequest {
      */
     workflowBucketOwnerId?: string | undefined;
     /**
-     * <p>(Optional) Use a container registry map to specify mappings between the ECR private repository and one or more upstream registries. For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/workflows-ecr.html">Container images</a> in the <i>Amazon Web Services HealthOmics User Guide</i>. </p>
+     * <p>(Optional) Use a container registry map to specify mappings between the ECR private repository and one or more upstream registries. For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/workflows-ecr.html">Container images</a> in the <i>Amazon Web Services HealthOmics User Guide</i>.</p>
      * @public
      */
     containerRegistryMap?: ContainerRegistryMap | undefined;

package/dist-types/ts3.4/models/models_0.d.ts

@@ -790,6 +790,7 @@ export declare const WorkflowEngine: {
   readonly CWL: "CWL";
   readonly NEXTFLOW: "NEXTFLOW";
   readonly WDL: "WDL";
+  readonly WDL_LENIENT: "WDL_LENIENT";
 };
 export type WorkflowEngine =
   (typeof WorkflowEngine)[keyof typeof WorkflowEngine];

package/package.json

@@ -1,7 +1,7 @@
 {
   "name": "@aws-sdk/client-omics",
   "description": "AWS SDK for JavaScript Omics Client for Node.js, Browser and React Native",
-  "version": "3.921.0",
+  "version": "3.925.0",
   "scripts": {
     "build": "concurrently 'yarn:build:cjs' 'yarn:build:es' 'yarn:build:types'",
     "build:cjs": "node ../../scripts/compilation/inline client-omics",
@@ -20,18 +20,18 @@
   "dependencies": {
     "@aws-crypto/sha256-browser": "5.2.0",
     "@aws-crypto/sha256-js": "5.2.0",
-    "@aws-sdk/core": "3.921.0",
-    "@aws-sdk/credential-provider-node": "3.921.0",
-    "@aws-sdk/middleware-host-header": "3.921.0",
-    "@aws-sdk/middleware-logger": "3.921.0",
-    "@aws-sdk/middleware-recursion-detection": "3.921.0",
-    "@aws-sdk/middleware-user-agent": "3.921.0",
-    "@aws-sdk/region-config-resolver": "3.921.0",
-    "@aws-sdk/types": "3.921.0",
-    "@aws-sdk/util-endpoints": "3.921.0",
-    "@aws-sdk/util-user-agent-browser": "3.921.0",
-    "@aws-sdk/util-user-agent-node": "3.921.0",
-    "@smithy/config-resolver": "^4.4.1",
+    "@aws-sdk/core": "3.922.0",
+    "@aws-sdk/credential-provider-node": "3.925.0",
+    "@aws-sdk/middleware-host-header": "3.922.0",
+    "@aws-sdk/middleware-logger": "3.922.0",
+    "@aws-sdk/middleware-recursion-detection": "3.922.0",
+    "@aws-sdk/middleware-user-agent": "3.922.0",
+    "@aws-sdk/region-config-resolver": "3.925.0",
+    "@aws-sdk/types": "3.922.0",
+    "@aws-sdk/util-endpoints": "3.922.0",
+    "@aws-sdk/util-user-agent-browser": "3.922.0",
+    "@aws-sdk/util-user-agent-node": "3.922.0",
+    "@smithy/config-resolver": "^4.4.2",
     "@smithy/core": "^3.17.2",
     "@smithy/fetch-http-handler": "^5.3.5",
     "@smithy/hash-node": "^4.2.4",
@@ -51,7 +51,7 @@
     "@smithy/util-body-length-browser": "^4.2.0",
     "@smithy/util-body-length-node": "^4.2.1",
     "@smithy/util-defaults-mode-browser": "^4.3.5",
-    "@smithy/util-defaults-mode-node": "^4.2.7",
+    "@smithy/util-defaults-mode-node": "^4.2.8",
     "@smithy/util-endpoints": "^3.2.4",
     "@smithy/util-middleware": "^4.2.4",
     "@smithy/util-retry": "^4.2.4",