@aws-sdk/client-omics 3.876.0 → 3.879.0

package/dist-types/models/models_1.d.ts

@@ -1,5 +1,170 @@
 import { StreamingBlobTypes } from "@smithy/types";
-import { ReadSetPartSource, ReferenceItem, StorageType, StoreStatus } from "./models_0";
+import { ETagAlgorithmFamily, ReadSetImportJobStatus, ReadSetPartSource, ReferenceItem, S3AccessConfig, SequenceStoreS3Access, SequenceStoreStatus, SseConfig, StartReadSetImportJobSourceItem, StorageType, StoreStatus } from "./models_0";
+/**
+ * @public
+ */
+export interface StartReadSetImportJobRequest {
+    /**
+     * <p>The read set's sequence store ID.</p>
+     * @public
+     */
+    sequenceStoreId: string | undefined;
+    /**
+     * <p>A service role for the job.</p>
+     * @public
+     */
+    roleArn: string | undefined;
+    /**
+     * <p>To ensure that jobs don't run multiple times, specify a unique token for each job.</p>
+     * @public
+     */
+    clientToken?: string | undefined;
+    /**
+     * <p>The job's source files.</p>
+     * @public
+     */
+    sources: StartReadSetImportJobSourceItem[] | undefined;
+}
+/**
+ * @public
+ */
+export interface StartReadSetImportJobResponse {
+    /**
+     * <p>The job's ID.</p>
+     * @public
+     */
+    id: string | undefined;
+    /**
+     * <p>The read set's sequence store ID.</p>
+     * @public
+     */
+    sequenceStoreId: string | undefined;
+    /**
+     * <p>The job's service role ARN.</p>
+     * @public
+     */
+    roleArn: string | undefined;
+    /**
+     * <p>The job's status.</p>
+     * @public
+     */
+    status: ReadSetImportJobStatus | undefined;
+    /**
+     * <p>When the job was created.</p>
+     * @public
+     */
+    creationTime: Date | undefined;
+}
+/**
+ * @public
+ */
+export interface UpdateSequenceStoreRequest {
+    /**
+     * <p>The ID of the sequence store.</p>
+     * @public
+     */
+    id: string | undefined;
+    /**
+     * <p>A name for the sequence store.</p>
+     * @public
+     */
+    name?: string | undefined;
+    /**
+     * <p>A description for the sequence store.</p>
+     * @public
+     */
+    description?: string | undefined;
+    /**
+     * <p>To ensure that requests don't run multiple times, specify a unique token for each request.</p>
+     * @public
+     */
+    clientToken?: string | undefined;
+    /**
+     * <p>The S3 URI of a bucket and folder to store Read Sets that fail to upload.</p>
+     * @public
+     */
+    fallbackLocation?: string | undefined;
+    /**
+     * <p>The tags keys to propagate to the S3 objects associated with read sets in the sequence store.</p>
+     * @public
+     */
+    propagatedSetLevelTags?: string[] | undefined;
+    /**
+     * <p>S3 access configuration parameters.</p>
+     * @public
+     */
+    s3AccessConfig?: S3AccessConfig | undefined;
+}
+/**
+ * @public
+ */
+export interface UpdateSequenceStoreResponse {
+    /**
+     * <p>The ID of the sequence store.</p>
+     * @public
+     */
+    id: string | undefined;
+    /**
+     * <p>The ARN of the sequence store.</p>
+     * @public
+     */
+    arn: string | undefined;
+    /**
+     * <p>The name of the sequence store.</p>
+     * @public
+     */
+    name?: string | undefined;
+    /**
+     * <p>Description of the sequence store.</p>
+     * @public
+     */
+    description?: string | undefined;
+    /**
+     * <p>Server-side encryption (SSE) settings for a store.</p>
+     * @public
+     */
+    sseConfig?: SseConfig | undefined;
+    /**
+     * <p>The time when the store was created.</p>
+     * @public
+     */
+    creationTime: Date | undefined;
+    /**
+     * <p>The last-updated time of the Sequence Store.</p>
+     * @public
+     */
+    updateTime?: Date | undefined;
+    /**
+     * <p>The tags keys to propagate to the S3 objects associated with read sets in the sequence store.</p>
+     * @public
+     */
+    propagatedSetLevelTags?: string[] | undefined;
+    /**
+     * <p>The status of the sequence store.</p>
+     * @public
+     */
+    status?: SequenceStoreStatus | undefined;
+    /**
+     * <p>The status message of the sequence store.</p>
+     * @public
+     */
+    statusMessage?: string | undefined;
+    /**
+     * <p>The S3 URI of a bucket and folder to store Read Sets that fail to upload.</p>
+     * @public
+     */
+    fallbackLocation?: string | undefined;
+    /**
+     * <p>The S3 access metadata of the sequence store.</p>
+     * @public
+     */
+    s3Access?: SequenceStoreS3Access | undefined;
+    /**
+     * <p>The ETag algorithm family to use on ingested read sets.</p>
+     * @public
+     */
+    eTagAlgorithmFamily?: ETagAlgorithmFamily | undefined;
+}
 /**
  * @public
  */
@@ -226,7 +391,7 @@ export interface UpdateWorkflowRequest {
  */
 export interface UpdateWorkflowVersionRequest {
     /**
-     * <p>The workflow's ID.</p>
+     * <p>The workflow's ID. The <code>workflowId</code> is not the UUID.</p>
      * @public
      */
     workflowId: string | undefined;
@@ -241,12 +406,12 @@ export interface UpdateWorkflowVersionRequest {
      */
     description?: string | undefined;
     /**
-     * <p>The default storage type for runs that use this workflow. STATIC storage allocates a fixed amount of storage. DYNAMIC storage dynamically scales the storage up or down, based on file system utilization. For more information about static and dynamic storage, see <a href="https://docs.aws.amazon.com/omics/latest/dev/Using-workflows.html">Running workflows</a> in the <i>Amazon Web Services HealthOmics User Guide</i>.</p>
+     * <p>The default storage type for runs that use this workflow version. The <code>storageType</code> can be overridden at run time. <code>DYNAMIC</code> storage dynamically scales the storage up or down, based on file system utilization. STATIC storage allocates a fixed amount of storage. For more information about dynamic and static storage types, see <a href="https://docs.aws.amazon.com/omics/latest/dev/workflows-run-types.html">Run storage types</a> in the <i>in the <i>Amazon Web Services HealthOmics User Guide</i> </i>.</p>
      * @public
      */
     storageType?: StorageType | undefined;
     /**
-     * <p>The default static storage capacity (in gibibytes) for runs that use this workflow or workflow version.</p>
+     * <p>The default static storage capacity (in gibibytes) for runs that use this workflow version. The <code>storageCapacity</code> can be overwritten at run time. The storage capacity is not required for runs with a <code>DYNAMIC</code> storage type.</p>
      * @public
      */
     storageCapacity?: number | undefined;

package/dist-types/ts3.4/commands/StartReadSetImportJobCommand.d.ts

@@ -3,7 +3,7 @@ import { MetadataBearer as __MetadataBearer } from "@smithy/types";
 import {
   StartReadSetImportJobRequest,
   StartReadSetImportJobResponse,
-} from "../models/models_0";
+} from "../models/models_1";
 import {
   OmicsClientResolvedConfig,
   ServiceInputTypes,

package/dist-types/ts3.4/commands/UpdateSequenceStoreCommand.d.ts

@@ -3,7 +3,7 @@ import { MetadataBearer as __MetadataBearer } from "@smithy/types";
 import {
   UpdateSequenceStoreRequest,
   UpdateSequenceStoreResponse,
-} from "../models/models_0";
+} from "../models/models_1";
 import {
   OmicsClientResolvedConfig,
   ServiceInputTypes,

package/dist-types/ts3.4/models/models_0.d.ts

@@ -599,6 +599,20 @@ export interface CompleteMultipartReadSetUploadRequest {
 export interface CompleteMultipartReadSetUploadResponse {
   readSetId: string | undefined;
 }
+export interface ImageMapping {
+  sourceImage?: string | undefined;
+  destinationImage?: string | undefined;
+}
+export interface RegistryMapping {
+  upstreamRegistryUrl?: string | undefined;
+  ecrRepositoryPrefix?: string | undefined;
+  upstreamRepositoryPrefix?: string | undefined;
+  ecrAccountId?: string | undefined;
+}
+export interface ContainerRegistryMap {
+  registryMappings?: RegistryMapping[] | undefined;
+  imageMappings?: ImageMapping[] | undefined;
+}
 export declare const FileType: {
   readonly BAM: "BAM";
   readonly CRAM: "CRAM";
@@ -801,6 +815,8 @@ export interface CreateWorkflowRequest {
   requestId?: string | undefined;
   accelerators?: Accelerators | undefined;
   storageType?: StorageType | undefined;
+  containerRegistryMap?: ContainerRegistryMap | undefined;
+  containerRegistryMapUri?: string | undefined;
   readmeMarkdown?: string | undefined;
   parameterTemplatePath?: string | undefined;
   readmePath?: string | undefined;
@@ -840,6 +856,8 @@ export interface CreateWorkflowVersionRequest {
   storageCapacity?: number | undefined;
   tags?: Record<string, string> | undefined;
   workflowBucketOwnerId?: string | undefined;
+  containerRegistryMap?: ContainerRegistryMap | undefined;
+  containerRegistryMapUri?: string | undefined;
   readmeMarkdown?: string | undefined;
   parameterTemplatePath?: string | undefined;
   readmePath?: string | undefined;
@@ -1349,6 +1367,11 @@ export interface GetRunTaskRequest {
   id: string | undefined;
   taskId: string | undefined;
 }
+export interface ImageDetails {
+  image?: string | undefined;
+  imageDigest?: string | undefined;
+  sourceImage?: string | undefined;
+}
 export declare const TaskStatus: {
   readonly CANCELLED: "CANCELLED";
   readonly COMPLETED: "COMPLETED";
@@ -1375,6 +1398,7 @@ export interface GetRunTaskResponse {
   gpus?: number | undefined;
   instanceType?: string | undefined;
   failureReason?: string | undefined;
+  imageDetails?: ImageDetails | undefined;
 }
 export interface GetS3AccessPolicyRequest {
   s3AccessPointArn: string | undefined;
@@ -1497,6 +1521,7 @@ export interface GetWorkflowResponse {
   accelerators?: Accelerators | undefined;
   storageType?: StorageType | undefined;
   uuid?: string | undefined;
+  containerRegistryMap?: ContainerRegistryMap | undefined;
   readme?: string | undefined;
   definitionRepositoryDetails?: DefinitionRepositoryDetails | undefined;
   readmePath?: string | undefined;
@@ -1529,6 +1554,7 @@ export interface GetWorkflowVersionResponse {
   tags?: Record<string, string> | undefined;
   uuid?: string | undefined;
   workflowBucketOwnerId?: string | undefined;
+  containerRegistryMap?: ContainerRegistryMap | undefined;
   readme?: string | undefined;
   definitionRepositoryDetails?: DefinitionRepositoryDetails | undefined;
   readmePath?: string | undefined;
@@ -2015,7 +2041,7 @@ export interface StartRunRequest {
   priority?: number | undefined;
   parameters?: __DocumentType | undefined;
   storageCapacity?: number | undefined;
-  outputUri?: string | undefined;
+  outputUri: string | undefined;
   logLevel?: RunLogLevel | undefined;
   tags?: Record<string, string> | undefined;
   requestId?: string | undefined;
@@ -2071,43 +2097,6 @@ export interface StartReadSetImportJobSourceItem {
   description?: string | undefined;
   tags?: Record<string, string> | undefined;
 }
-export interface StartReadSetImportJobRequest {
-  sequenceStoreId: string | undefined;
-  roleArn: string | undefined;
-  clientToken?: string | undefined;
-  sources: StartReadSetImportJobSourceItem[] | undefined;
-}
-export interface StartReadSetImportJobResponse {
-  id: string | undefined;
-  sequenceStoreId: string | undefined;
-  roleArn: string | undefined;
-  status: ReadSetImportJobStatus | undefined;
-  creationTime: Date | undefined;
-}
-export interface UpdateSequenceStoreRequest {
-  id: string | undefined;
-  name?: string | undefined;
-  description?: string | undefined;
-  clientToken?: string | undefined;
-  fallbackLocation?: string | undefined;
-  propagatedSetLevelTags?: string[] | undefined;
-  s3AccessConfig?: S3AccessConfig | undefined;
-}
-export interface UpdateSequenceStoreResponse {
-  id: string | undefined;
-  arn: string | undefined;
-  name?: string | undefined;
-  description?: string | undefined;
-  sseConfig?: SseConfig | undefined;
-  creationTime: Date | undefined;
-  updateTime?: Date | undefined;
-  propagatedSetLevelTags?: string[] | undefined;
-  status?: SequenceStoreStatus | undefined;
-  statusMessage?: string | undefined;
-  fallbackLocation?: string | undefined;
-  s3Access?: SequenceStoreS3Access | undefined;
-  eTagAlgorithmFamily?: ETagAlgorithmFamily | undefined;
-}
 export declare const GetReadSetResponseFilterSensitiveLog: (
   obj: GetReadSetResponse
 ) => any;

package/dist-types/ts3.4/models/models_1.d.ts

@@ -1,10 +1,54 @@
 import { StreamingBlobTypes } from "@smithy/types";
 import {
+  ETagAlgorithmFamily,
+  ReadSetImportJobStatus,
   ReadSetPartSource,
   ReferenceItem,
+  S3AccessConfig,
+  SequenceStoreS3Access,
+  SequenceStoreStatus,
+  SseConfig,
+  StartReadSetImportJobSourceItem,
   StorageType,
   StoreStatus,
 } from "./models_0";
+export interface StartReadSetImportJobRequest {
+  sequenceStoreId: string | undefined;
+  roleArn: string | undefined;
+  clientToken?: string | undefined;
+  sources: StartReadSetImportJobSourceItem[] | undefined;
+}
+export interface StartReadSetImportJobResponse {
+  id: string | undefined;
+  sequenceStoreId: string | undefined;
+  roleArn: string | undefined;
+  status: ReadSetImportJobStatus | undefined;
+  creationTime: Date | undefined;
+}
+export interface UpdateSequenceStoreRequest {
+  id: string | undefined;
+  name?: string | undefined;
+  description?: string | undefined;
+  clientToken?: string | undefined;
+  fallbackLocation?: string | undefined;
+  propagatedSetLevelTags?: string[] | undefined;
+  s3AccessConfig?: S3AccessConfig | undefined;
+}
+export interface UpdateSequenceStoreResponse {
+  id: string | undefined;
+  arn: string | undefined;
+  name?: string | undefined;
+  description?: string | undefined;
+  sseConfig?: SseConfig | undefined;
+  creationTime: Date | undefined;
+  updateTime?: Date | undefined;
+  propagatedSetLevelTags?: string[] | undefined;
+  status?: SequenceStoreStatus | undefined;
+  statusMessage?: string | undefined;
+  fallbackLocation?: string | undefined;
+  s3Access?: SequenceStoreS3Access | undefined;
+  eTagAlgorithmFamily?: ETagAlgorithmFamily | undefined;
+}
 export interface UploadReadSetPartRequest {
   sequenceStoreId: string | undefined;
   uploadId: string | undefined;

package/package.json

@@ -1,7 +1,7 @@
 {
   "name": "@aws-sdk/client-omics",
   "description": "AWS SDK for JavaScript Omics Client for Node.js, Browser and React Native",
-  "version": "3.876.0",
+  "version": "3.879.0",
   "scripts": {
     "build": "concurrently 'yarn:build:cjs' 'yarn:build:es' 'yarn:build:types'",
     "build:cjs": "node ../../scripts/compilation/inline client-omics",
@@ -20,38 +20,38 @@
   "dependencies": {
     "@aws-crypto/sha256-browser": "5.2.0",
     "@aws-crypto/sha256-js": "5.2.0",
-    "@aws-sdk/core": "3.876.0",
-    "@aws-sdk/credential-provider-node": "3.876.0",
+    "@aws-sdk/core": "3.879.0",
+    "@aws-sdk/credential-provider-node": "3.879.0",
     "@aws-sdk/middleware-host-header": "3.873.0",
     "@aws-sdk/middleware-logger": "3.876.0",
     "@aws-sdk/middleware-recursion-detection": "3.873.0",
-    "@aws-sdk/middleware-user-agent": "3.876.0",
+    "@aws-sdk/middleware-user-agent": "3.879.0",
     "@aws-sdk/region-config-resolver": "3.873.0",
     "@aws-sdk/types": "3.862.0",
-    "@aws-sdk/util-endpoints": "3.873.0",
+    "@aws-sdk/util-endpoints": "3.879.0",
     "@aws-sdk/util-user-agent-browser": "3.873.0",
-    "@aws-sdk/util-user-agent-node": "3.876.0",
+    "@aws-sdk/util-user-agent-node": "3.879.0",
     "@smithy/config-resolver": "^4.1.5",
-    "@smithy/core": "^3.8.0",
+    "@smithy/core": "^3.9.0",
     "@smithy/fetch-http-handler": "^5.1.1",
     "@smithy/hash-node": "^4.0.5",
     "@smithy/invalid-dependency": "^4.0.5",
     "@smithy/middleware-content-length": "^4.0.5",
-    "@smithy/middleware-endpoint": "^4.1.18",
-    "@smithy/middleware-retry": "^4.1.19",
+    "@smithy/middleware-endpoint": "^4.1.19",
+    "@smithy/middleware-retry": "^4.1.20",
     "@smithy/middleware-serde": "^4.0.9",
     "@smithy/middleware-stack": "^4.0.5",
     "@smithy/node-config-provider": "^4.1.4",
     "@smithy/node-http-handler": "^4.1.1",
     "@smithy/protocol-http": "^5.1.3",
-    "@smithy/smithy-client": "^4.4.10",
+    "@smithy/smithy-client": "^4.5.0",
     "@smithy/types": "^4.3.2",
     "@smithy/url-parser": "^4.0.5",
     "@smithy/util-base64": "^4.0.0",
     "@smithy/util-body-length-browser": "^4.0.0",
     "@smithy/util-body-length-node": "^4.0.0",
-    "@smithy/util-defaults-mode-browser": "^4.0.26",
-    "@smithy/util-defaults-mode-node": "^4.0.26",
+    "@smithy/util-defaults-mode-browser": "^4.0.27",
+    "@smithy/util-defaults-mode-node": "^4.0.27",
     "@smithy/util-endpoints": "^3.0.7",
     "@smithy/util-middleware": "^4.0.5",
     "@smithy/util-retry": "^4.0.7",