@aws-sdk/client-omics 3.873.0 → 3.878.0

package/dist-cjs/index.js

@@ -1445,6 +1445,8 @@ var se_CreateWorkflowCommand = /* @__PURE__ */ __name(async (input, context) =>
   body = JSON.stringify(
     (0, import_smithy_client.take)(input, {
       accelerators: [],
+      containerRegistryMap: /* @__PURE__ */ __name((_) => (0, import_smithy_client._json)(_), "containerRegistryMap"),
+      containerRegistryMapUri: [],
       definitionRepository: /* @__PURE__ */ __name((_) => (0, import_smithy_client._json)(_), "definitionRepository"),
       definitionUri: [],
       definitionZip: /* @__PURE__ */ __name((_) => context.base64Encoder(_), "definitionZip"),
@@ -1486,6 +1488,8 @@ var se_CreateWorkflowVersionCommand = /* @__PURE__ */ __name(async (input, conte
   body = JSON.stringify(
     (0, import_smithy_client.take)(input, {
       accelerators: [],
+      containerRegistryMap: /* @__PURE__ */ __name((_) => (0, import_smithy_client._json)(_), "containerRegistryMap"),
+      containerRegistryMapUri: [],
       definitionRepository: /* @__PURE__ */ __name((_) => (0, import_smithy_client._json)(_), "definitionRepository"),
       definitionUri: [],
       definitionZip: /* @__PURE__ */ __name((_) => context.base64Encoder(_), "definitionZip"),
@@ -4089,6 +4093,7 @@ var de_GetRunTaskCommand = /* @__PURE__ */ __name(async (output, context) => {
     creationTime: /* @__PURE__ */ __name((_) => (0, import_smithy_client.expectNonNull)((0, import_smithy_client.parseRfc3339DateTimeWithOffset)(_)), "creationTime"),
     failureReason: import_smithy_client.expectString,
     gpus: import_smithy_client.expectInt32,
+    imageDetails: import_smithy_client._json,
     instanceType: import_smithy_client.expectString,
     logStream: import_smithy_client.expectString,
     memory: import_smithy_client.expectInt32,
@@ -4220,6 +4225,7 @@ var de_GetWorkflowCommand = /* @__PURE__ */ __name(async (output, context) => {
   const doc = (0, import_smithy_client.take)(data, {
     accelerators: import_smithy_client.expectString,
     arn: import_smithy_client.expectString,
+    containerRegistryMap: import_smithy_client._json,
     creationTime: /* @__PURE__ */ __name((_) => (0, import_smithy_client.expectNonNull)((0, import_smithy_client.parseRfc3339DateTimeWithOffset)(_)), "creationTime"),
     definition: import_smithy_client.expectString,
     definitionRepositoryDetails: import_smithy_client._json,
@@ -4255,6 +4261,7 @@ var de_GetWorkflowVersionCommand = /* @__PURE__ */ __name(async (output, context
   const doc = (0, import_smithy_client.take)(data, {
     accelerators: import_smithy_client.expectString,
     arn: import_smithy_client.expectString,
+    containerRegistryMap: import_smithy_client._json,
     creationTime: /* @__PURE__ */ __name((_) => (0, import_smithy_client.expectNonNull)((0, import_smithy_client.parseRfc3339DateTimeWithOffset)(_)), "creationTime"),
     definition: import_smithy_client.expectString,
     definitionRepositoryDetails: import_smithy_client._json,

package/dist-es/protocols/Aws_restJson1.js

@@ -384,6 +384,8 @@ export const se_CreateWorkflowCommand = async (input, context) => {
     let body;
     body = JSON.stringify(take(input, {
         accelerators: [],
+        containerRegistryMap: (_) => _json(_),
+        containerRegistryMapUri: [],
         definitionRepository: (_) => _json(_),
         definitionUri: [],
         definitionZip: (_) => context.base64Encoder(_),
@@ -423,6 +425,8 @@ export const se_CreateWorkflowVersionCommand = async (input, context) => {
     let body;
     body = JSON.stringify(take(input, {
         accelerators: [],
+        containerRegistryMap: (_) => _json(_),
+        containerRegistryMapUri: [],
         definitionRepository: (_) => _json(_),
         definitionUri: [],
         definitionZip: (_) => context.base64Encoder(_),
@@ -2959,6 +2963,7 @@ export const de_GetRunTaskCommand = async (output, context) => {
         creationTime: (_) => __expectNonNull(__parseRfc3339DateTimeWithOffset(_)),
         failureReason: __expectString,
         gpus: __expectInt32,
+        imageDetails: _json,
         instanceType: __expectString,
         logStream: __expectString,
         memory: __expectInt32,
@@ -3090,6 +3095,7 @@ export const de_GetWorkflowCommand = async (output, context) => {
     const doc = take(data, {
         accelerators: __expectString,
         arn: __expectString,
+        containerRegistryMap: _json,
         creationTime: (_) => __expectNonNull(__parseRfc3339DateTimeWithOffset(_)),
         definition: __expectString,
         definitionRepositoryDetails: _json,
@@ -3125,6 +3131,7 @@ export const de_GetWorkflowVersionCommand = async (output, context) => {
     const doc = take(data, {
         accelerators: __expectString,
         arn: __expectString,
+        containerRegistryMap: _json,
         creationTime: (_) => __expectNonNull(__parseRfc3339DateTimeWithOffset(_)),
         definition: __expectString,
         definitionRepositoryDetails: _json,

package/dist-types/commands/AbortMultipartReadSetUploadCommand.d.ts

@@ -27,7 +27,7 @@ declare const AbortMultipartReadSetUploadCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Stops a multipart upload.</p>
+ * <p>Stops a multipart read set upload into a sequence store and returns a response with no body if the operation is successful. To confirm that a multipart read set upload has been stopped, use the <code>ListMultipartReadSetUploads</code> API operation to view all active multipart read set uploads.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/BatchDeleteReadSetCommand.d.ts

@@ -27,7 +27,7 @@ declare const BatchDeleteReadSetCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Deletes one or more read sets.</p>
+ * <p>Deletes one or more read sets. If the operation is successful, it returns a response with no body. If there is an error with deleting one of the read sets, the operation returns an error list. If the operation successfully deletes only a subset of files, it will return an error list for the remaining files that fail to be deleted. There is a limit of 100 read sets that can be deleted in each <code>BatchDeleteReadSet</code> API call.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/CompleteMultipartReadSetUploadCommand.d.ts

@@ -27,7 +27,7 @@ declare const CompleteMultipartReadSetUploadCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Concludes a multipart upload once you have uploaded all the components.</p>
+ * <p>Completes a multipart read set upload into a sequence store after you have initiated the upload process with <code>CreateMultipartReadSetUpload</code> and uploaded all read set parts using <code>UploadReadSetPart</code>. You must specify the parts you uploaded using the parts parameter. If the operation is successful, it returns the read set ID(s) of the uploaded read set(s).</p> <p>For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/synchronous-uploads.html">Direct upload to a sequence store</a> in the <i>Amazon Web Services HealthOmics User Guide</i>.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/CreateMultipartReadSetUploadCommand.d.ts

@@ -27,7 +27,7 @@ declare const CreateMultipartReadSetUploadCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Begins a multipart read set upload.</p>
+ * <p>Initiates a multipart read set upload for uploading partitioned source files into a sequence store. You can directly import source files from an EC2 instance and other local compute, or from an S3 bucket. To separate these source files into parts, use the <code>split</code> operation. Each part cannot be larger than 100 MB. If the operation is successful, it provides an <code>uploadId</code> which is required by the <code>UploadReadSetPart</code> API operation to upload parts into a sequence store.</p> <p>To continue uploading a multipart read set into your sequence store, you must use the <code>UploadReadSetPart</code> API operation to upload each part individually following the steps below:</p> <ul> <li> <p>Specify the <code>uploadId</code> obtained from the previous call to <code>CreateMultipartReadSetUpload</code>.</p> </li> <li> <p>Upload parts for that <code>uploadId</code>.</p> </li> </ul> <p>When you have finished uploading parts, use the <code>CompleteMultipartReadSetUpload</code> API to complete the multipart read set upload and to retrieve the final read set IDs in the response.</p> <p>To learn more about creating parts and the <code>split</code> operation, see <a href="https://docs.aws.amazon.com/omics/latest/dev/synchronous-uploads.html">Direct upload to a sequence store</a> in the <i>Amazon Web Services HealthOmics User Guide</i>.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/CreateReferenceStoreCommand.d.ts

@@ -27,7 +27,7 @@ declare const CreateReferenceStoreCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Creates a reference store.</p>
+ * <p>Creates a reference store and returns metadata in JSON format. Reference stores are used to store reference genomes in FASTA format. A reference store is created when the first reference genome is imported. To import additional reference genomes from an Amazon S3 bucket, use the <code>StartReferenceImportJob</code> API operation. </p> <p>For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/create-reference-store.html">Creating a HealthOmics reference store</a> in the <i>Amazon Web Services HealthOmics User Guide</i>.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/CreateSequenceStoreCommand.d.ts

@@ -27,7 +27,7 @@ declare const CreateSequenceStoreCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Creates a sequence store.</p>
+ * <p>Creates a sequence store and returns its metadata. Sequence stores are used to store sequence data files called read sets that are saved in FASTQ, BAM, uBAM, or CRAM formats. For aligned formats (BAM and CRAM), a sequence store can only use one reference genome. For unaligned formats (FASTQ and uBAM), a reference genome is not required. You can create multiple sequence stores per region per account. </p> <p>The following are optional parameters you can specify for your sequence store:</p> <ul> <li> <p>Use <code>s3AccessConfig</code> to configure your sequence store with S3 access logs (recommended).</p> </li> <li> <p>Use <code>sseConfig</code> to define your own KMS key for encryption.</p> </li> <li> <p>Use <code>eTagAlgorithmFamily</code> to define which algorithm to use for the HealthOmics eTag on objects.</p> </li> <li> <p>Use <code>fallbackLocation</code> to define a backup location for storing files that have failed a direct upload.</p> </li> <li> <p>Use <code>propagatedSetLevelTags</code> to configure tags that propagate to all objects in your store.</p> </li> </ul> <p>For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/create-sequence-store.html">Creating a HealthOmics sequence store</a> in the <i>Amazon Web Services HealthOmics User Guide</i>.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/CreateWorkflowCommand.d.ts

@@ -27,7 +27,7 @@ declare const CreateWorkflowCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Creates a private workflow. Before you create a private workflow, you must create and configure these required resources:</p> <ul> <li> <p> <i>Workflow definition files</i>: Define your workflow in one or more workflow definition files, written in WDL, Nextflow, or CWL. The workflow definition specifies the inputs and outputs for runs that use the workflow. It also includes specifications for the runs and run tasks for your workflow, including compute and memory requirements. The workflow definition file must be in .zip format.</p> </li> <li> <p>(Optional) <i>Parameter template</i>: You can create a parameter template file that defines the run parameters, or Amazon Web Services HealthOmics can generate the parameter template for you.</p> </li> <li> <p> <i>ECR container images</i>: Create one or more container images for the workflow. Store the images in a private ECR repository.</p> </li> <li> <p>(Optional) <i>Sentieon licenses</i>: Request a Sentieon license if using the Sentieon software in a private workflow.</p> </li> </ul> <p>For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/creating-private-workflows.html">Creating or updating a private workflow in Amazon Web Services HealthOmics</a> in the <i>Amazon Web Services HealthOmics User Guide</i>.</p>
+ * <p>Creates a private workflow. Before you create a private workflow, you must create and configure these required resources:</p> <ul> <li> <p> <i>Workflow definition files</i>: Define your workflow in one or more workflow definition files, written in WDL, Nextflow, or CWL. The workflow definition specifies the inputs and outputs for runs that use the workflow. It also includes specifications for the runs and run tasks for your workflow, including compute and memory requirements. The workflow definition file must be in .zip format.</p> </li> <li> <p>(Optional) <i>Parameter template</i>: You can create a parameter template file that defines the run parameters, or Amazon Web Services HealthOmics can generate the parameter template for you.</p> </li> <li> <p> <i>ECR container images</i>: Create container images for the workflow in a private ECR repository, or synchronize images from a supported upstream registry with your Amazon ECR private repository.</p> </li> <li> <p>(Optional) <i>Sentieon licenses</i>: Request a Sentieon license if using the Sentieon software in a private workflow.</p> </li> </ul> <p>For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/creating-private-workflows.html">Creating or updating a private workflow in Amazon Web Services HealthOmics</a> in the <i>Amazon Web Services HealthOmics User Guide</i>.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript
@@ -54,6 +54,23 @@ declare const CreateWorkflowCommand_base: {
  *   requestId: "STRING_VALUE", // required
  *   accelerators: "STRING_VALUE",
  *   storageType: "STRING_VALUE",
+ *   containerRegistryMap: { // ContainerRegistryMap
+ *     registryMappings: [ // RegistryMappingsList
+ *       { // RegistryMapping
+ *         upstreamRegistryUrl: "STRING_VALUE",
+ *         ecrRepositoryPrefix: "STRING_VALUE",
+ *         upstreamRepositoryPrefix: "STRING_VALUE",
+ *         ecrAccountId: "STRING_VALUE",
+ *       },
+ *     ],
+ *     imageMappings: [ // ImageMappingsList
+ *       { // ImageMapping
+ *         sourceImage: "STRING_VALUE",
+ *         destinationImage: "STRING_VALUE",
+ *       },
+ *     ],
+ *   },
+ *   containerRegistryMapUri: "STRING_VALUE",
  *   readmeMarkdown: "STRING_VALUE",
  *   parameterTemplatePath: "STRING_VALUE",
  *   readmePath: "STRING_VALUE",

package/dist-types/commands/CreateWorkflowVersionCommand.d.ts

@@ -27,7 +27,7 @@ declare const CreateWorkflowVersionCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Creates a new workflow version for the workflow that you specify with the <code>workflowId</code> parameter.</p> <p>When you create a new version of a workflow, you need to specify the configuration for the new version. It doesn't inherit any configuration values from the workflow.</p> <p>Provide a version name that is unique for this workflow. You cannot change the name after HealthOmics creates the version.</p> <note> <p>Don’t include any personally identifiable information (PII) in the version name. Version names appear in the workflow version ARN.</p> </note> <p>For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/workflow-versions.html">Workflow versioning in Amazon Web Services HealthOmics</a> in the <i>Amazon Web Services HealthOmics User Guide</i>.</p>
+ * <p>Creates a new workflow version for the workflow that you specify with the <code>workflowId</code> parameter.</p> <p>When you create a new version of a workflow, you need to specify the configuration for the new version. It doesn't inherit any configuration values from the workflow.</p> <p>Provide a version name that is unique for this workflow. You cannot change the name after HealthOmics creates the version.</p> <note> <p>Don't include any personally identifiable information (PII) in the version name. Version names appear in the workflow version ARN.</p> </note> <p>For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/workflow-versions.html">Workflow versioning in Amazon Web Services HealthOmics</a> in the <i>Amazon Web Services HealthOmics User Guide</i>.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript
@@ -56,6 +56,23 @@ declare const CreateWorkflowVersionCommand_base: {
  *     "<keys>": "STRING_VALUE",
  *   },
  *   workflowBucketOwnerId: "STRING_VALUE",
+ *   containerRegistryMap: { // ContainerRegistryMap
+ *     registryMappings: [ // RegistryMappingsList
+ *       { // RegistryMapping
+ *         upstreamRegistryUrl: "STRING_VALUE",
+ *         ecrRepositoryPrefix: "STRING_VALUE",
+ *         upstreamRepositoryPrefix: "STRING_VALUE",
+ *         ecrAccountId: "STRING_VALUE",
+ *       },
+ *     ],
+ *     imageMappings: [ // ImageMappingsList
+ *       { // ImageMapping
+ *         sourceImage: "STRING_VALUE",
+ *         destinationImage: "STRING_VALUE",
+ *       },
+ *     ],
+ *   },
+ *   containerRegistryMapUri: "STRING_VALUE",
  *   readmeMarkdown: "STRING_VALUE",
  *   parameterTemplatePath: "STRING_VALUE",
  *   readmePath: "STRING_VALUE",

package/dist-types/commands/DeleteReferenceCommand.d.ts

@@ -27,7 +27,7 @@ declare const DeleteReferenceCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Deletes a genome reference.</p>
+ * <p>Deletes a reference genome and returns a response with no body if the operation is successful. The read set associated with the reference genome must first be deleted before deleting the reference genome. After the reference genome is deleted, you can delete the reference store using the <code>DeleteReferenceStore</code> API operation.</p> <p>For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/deleting-reference-and-sequence-stores.html">Deleting HealthOmics reference and sequence stores</a> in the <i>Amazon Web Services HealthOmics User Guide</i>.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/DeleteReferenceStoreCommand.d.ts

@@ -27,7 +27,7 @@ declare const DeleteReferenceStoreCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Deletes a genome reference store.</p>
+ * <p>Deletes a reference store and returns a response with no body if the operation is successful. You can only delete a reference store when it does not contain any reference genomes. To empty a reference store, use <code>DeleteReference</code>.</p> <p>For more information about your workflow status, see <a href="https://docs.aws.amazon.com/omics/latest/dev/deleting-reference-and-sequence-stores.html">Deleting HealthOmics reference and sequence stores</a> in the <i>Amazon Web Services HealthOmics User Guide</i>.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/DeleteSequenceStoreCommand.d.ts

@@ -27,7 +27,7 @@ declare const DeleteSequenceStoreCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Deletes a sequence store.</p>
+ * <p>Deletes a sequence store and returns a response with no body if the operation is successful. You can only delete a sequence store when it does not contain any read sets.</p> <p>Use the <code>BatchDeleteReadSet</code> API operation to ensure that all read sets in the sequence store are deleted. When a sequence store is deleted, all tags associated with the store are also deleted.</p> <p>For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/deleting-reference-and-sequence-stores.html">Deleting HealthOmics reference and sequence stores</a> in the <i>Amazon Web Services HealthOmics User Guide</i>.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/DeleteWorkflowCommand.d.ts

@@ -27,7 +27,7 @@ declare const DeleteWorkflowCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Deletes a workflow by specifying its ID. No response is returned if the deletion is successful.</p> <p>To verify that the workflow is deleted:</p> <ul> <li> <p>Use <code>ListWorkflows</code> to confirm the workflow no longer appears in the list.</p> </li> <li> <p>Use <code>GetWorkflow</code> to verify the workflow cannot be found.</p> </li> </ul>
+ * <p>Deletes a workflow by specifying its ID. This operation returns a response with no body if the deletion is successful.</p> <p>To verify that the workflow is deleted:</p> <ul> <li> <p>Use <code>ListWorkflows</code> to confirm the workflow no longer appears in the list.</p> </li> <li> <p>Use <code>GetWorkflow</code> to verify the workflow cannot be found.</p> </li> </ul>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/GetReadSetActivationJobCommand.d.ts

@@ -27,7 +27,7 @@ declare const GetReadSetActivationJobCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Gets information about a read set activation job.</p>
+ * <p>Returns detailed information about the status of a read set activation job in JSON format.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/GetReadSetCommand.d.ts

@@ -28,7 +28,7 @@ declare const GetReadSetCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Gets a file from a read set.</p>
+ * <p>Retrieves detailed information from parts of a read set and returns the read set in the same format that it was uploaded. You must have read sets uploaded to your sequence store in order to run this operation.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/GetReadSetExportJobCommand.d.ts

@@ -27,7 +27,7 @@ declare const GetReadSetExportJobCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Gets information about a read set export job.</p>
+ * <p>Retrieves status information about a read set export job and returns the data in JSON format. Use this operation to actively monitor the progress of an export job.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/GetReadSetImportJobCommand.d.ts

@@ -27,7 +27,7 @@ declare const GetReadSetImportJobCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Gets information about a read set import job.</p>
+ * <p>Gets detailed and status information about a read set import job and returns the data in JSON format.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/GetReadSetMetadataCommand.d.ts

@@ -27,7 +27,7 @@ declare const GetReadSetMetadataCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Gets details about a read set.</p>
+ * <p>Retrieves the metadata for a read set from a sequence store in JSON format. This operation does not return tags. To retrieve the list of tags for a read set, use the <code>ListTagsForResource</code> API operation.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/GetReferenceCommand.d.ts

@@ -28,7 +28,7 @@ declare const GetReferenceCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Gets a reference file.</p>
+ * <p>Downloads parts of data from a reference genome and returns the reference file in the same format that it was uploaded.</p> <p>For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/create-reference-store.html">Creating a HealthOmics reference store</a> in the <i>Amazon Web Services HealthOmics User Guide</i>.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/GetReferenceImportJobCommand.d.ts

@@ -27,7 +27,7 @@ declare const GetReferenceImportJobCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Gets information about a reference import job.</p>
+ * <p>Monitors the status of a reference import job. This operation can be called after calling the <code>StartReferenceImportJob</code> operation.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/GetReferenceMetadataCommand.d.ts

@@ -27,7 +27,7 @@ declare const GetReferenceMetadataCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Gets information about a genome reference's metadata.</p>
+ * <p>Retrieves metadata for a reference genome. This operation returns the number of parts, part size, and MD5 of an entire file. This operation does not return tags. To retrieve the list of tags for a read set, use the <code>ListTagsForResource</code> API operation.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/GetRunTaskCommand.d.ts

@@ -56,6 +56,11 @@ declare const GetRunTaskCommand_base: {
  * //   gpus: Number("int"),
  * //   instanceType: "STRING_VALUE",
  * //   failureReason: "STRING_VALUE",
+ * //   imageDetails: { // ImageDetails
+ * //     image: "STRING_VALUE",
+ * //     imageDigest: "STRING_VALUE",
+ * //     sourceImage: "STRING_VALUE",
+ * //   },
  * // };
  *
  * ```

package/dist-types/commands/GetSequenceStoreCommand.d.ts

@@ -27,7 +27,7 @@ declare const GetSequenceStoreCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Gets information about a sequence store.</p>
+ * <p>Retrieves metadata for a sequence store using its ID and returns it in JSON format.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/GetWorkflowCommand.d.ts

@@ -73,6 +73,22 @@ declare const GetWorkflowCommand_base: {
  * //   accelerators: "STRING_VALUE",
  * //   storageType: "STRING_VALUE",
  * //   uuid: "STRING_VALUE",
+ * //   containerRegistryMap: { // ContainerRegistryMap
+ * //     registryMappings: [ // RegistryMappingsList
+ * //       { // RegistryMapping
+ * //         upstreamRegistryUrl: "STRING_VALUE",
+ * //         ecrRepositoryPrefix: "STRING_VALUE",
+ * //         upstreamRepositoryPrefix: "STRING_VALUE",
+ * //         ecrAccountId: "STRING_VALUE",
+ * //       },
+ * //     ],
+ * //     imageMappings: [ // ImageMappingsList
+ * //       { // ImageMapping
+ * //         sourceImage: "STRING_VALUE",
+ * //         destinationImage: "STRING_VALUE",
+ * //       },
+ * //     ],
+ * //   },
  * //   readme: "STRING_VALUE",
  * //   definitionRepositoryDetails: { // DefinitionRepositoryDetails
  * //     connectionArn: "STRING_VALUE",

package/dist-types/commands/GetWorkflowVersionCommand.d.ts

@@ -75,6 +75,22 @@ declare const GetWorkflowVersionCommand_base: {
  * //   },
  * //   uuid: "STRING_VALUE",
  * //   workflowBucketOwnerId: "STRING_VALUE",
+ * //   containerRegistryMap: { // ContainerRegistryMap
+ * //     registryMappings: [ // RegistryMappingsList
+ * //       { // RegistryMapping
+ * //         upstreamRegistryUrl: "STRING_VALUE",
+ * //         ecrRepositoryPrefix: "STRING_VALUE",
+ * //         upstreamRepositoryPrefix: "STRING_VALUE",
+ * //         ecrAccountId: "STRING_VALUE",
+ * //       },
+ * //     ],
+ * //     imageMappings: [ // ImageMappingsList
+ * //       { // ImageMapping
+ * //         sourceImage: "STRING_VALUE",
+ * //         destinationImage: "STRING_VALUE",
+ * //       },
+ * //     ],
+ * //   },
  * //   readme: "STRING_VALUE",
  * //   definitionRepositoryDetails: { // DefinitionRepositoryDetails
  * //     connectionArn: "STRING_VALUE",

package/dist-types/commands/ListMultipartReadSetUploadsCommand.d.ts

@@ -27,7 +27,7 @@ declare const ListMultipartReadSetUploadsCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Lists multipart read set uploads and for in progress uploads. Once the upload is completed, a read set is created and the upload will no longer be returned in the response.</p>
+ * <p>Lists in-progress multipart read set uploads for a sequence store and returns it in a JSON formatted output. Multipart read set uploads are initiated by the <code>CreateMultipartReadSetUploads</code> API operation. This operation returns a response with no body when the upload is complete. </p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/ListReadSetActivationJobsCommand.d.ts

@@ -27,7 +27,7 @@ declare const ListReadSetActivationJobsCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Retrieves a list of read set activation jobs.</p>
+ * <p>Retrieves a list of read set activation jobs and returns the metadata in a JSON formatted output. To extract metadata from a read set activation job, use the <code>GetReadSetActivationJob</code> API operation.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/ListReadSetExportJobsCommand.d.ts

@@ -27,7 +27,7 @@ declare const ListReadSetExportJobsCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Retrieves a list of read set export jobs.</p>
+ * <p>Retrieves a list of read set export jobs in a JSON formatted response. This API operation is used to check the status of a read set export job initiated by the <code>StartReadSetExportJob</code> API operation.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/ListReadSetImportJobsCommand.d.ts

@@ -27,7 +27,7 @@ declare const ListReadSetImportJobsCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Retrieves a list of read set import jobs.</p>
+ * <p>Retrieves a list of read set import jobs and returns the data in JSON format.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/ListReadSetUploadPartsCommand.d.ts

@@ -27,7 +27,7 @@ declare const ListReadSetUploadPartsCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>This operation will list all parts in a requested multipart upload for a sequence store.</p>
+ * <p>Lists all parts in a multipart read set upload for a sequence store and returns the metadata in a JSON formatted output.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/ListReadSetsCommand.d.ts

@@ -27,7 +27,7 @@ declare const ListReadSetsCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Retrieves a list of read sets.</p>
+ * <p>Retrieves a list of read sets from a sequence store ID and returns the metadata in JSON format.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/ListReferenceImportJobsCommand.d.ts

@@ -27,7 +27,7 @@ declare const ListReferenceImportJobsCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Retrieves a list of reference import jobs.</p>
+ * <p>Retrieves the metadata of one or more reference import jobs for a reference store.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/ListReferenceStoresCommand.d.ts

@@ -27,7 +27,7 @@ declare const ListReferenceStoresCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Retrieves a list of reference stores.</p>
+ * <p>Retrieves a list of reference stores linked to your account and returns their metadata in JSON format.</p> <p>For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/create-reference-store.html">Creating a reference store</a> in the <i>Amazon Web Services HealthOmics User Guide</i>.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/ListReferencesCommand.d.ts

@@ -27,7 +27,7 @@ declare const ListReferencesCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Retrieves a list of references.</p>
+ * <p>Retrieves the metadata of one or more reference genomes in a reference store.</p> <p>For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/create-reference-store.html">Creating a reference store</a> in the <i>Amazon Web Services HealthOmics User Guide</i>.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/ListSequenceStoresCommand.d.ts

@@ -27,7 +27,7 @@ declare const ListSequenceStoresCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Retrieves a list of sequence stores.</p>
+ * <p>Retrieves a list of sequence stores and returns each sequence store's metadata.</p> <p>For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/create-sequence-store.html">Creating a HealthOmics sequence store</a> in the <i>Amazon Web Services HealthOmics User Guide</i>.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/StartReadSetActivationJobCommand.d.ts

@@ -27,7 +27,7 @@ declare const StartReadSetActivationJobCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Activates an archived read set. To reduce storage charges, Amazon Omics archives unused read sets after 30 days.</p>
+ * <p>Activates an archived read set and returns its metadata in a JSON formatted output. AWS HealthOmics automatically archives unused read sets after 30 days. To monitor the status of your read set activation job, use the <code>GetReadSetActivationJob</code> operation.</p> <p>To learn more, see <a href="https://docs.aws.amazon.com/omics/latest/dev/activating-read-sets.html">Activating read sets</a> in the <i>Amazon Web Services HealthOmics User Guide</i>.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/StartReadSetExportJobCommand.d.ts

@@ -27,7 +27,7 @@ declare const StartReadSetExportJobCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Exports a read set to Amazon S3.</p>
+ * <p>Starts a read set export job. When the export job is finished, the read set is exported to an Amazon S3 bucket which can be retrieved using the <code>GetReadSetExportJob</code> API operation.</p> <p>To monitor the status of the export job, use the <code>ListReadSetExportJobs</code> API operation. </p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/StartReadSetImportJobCommand.d.ts

@@ -1,6 +1,6 @@
 import { Command as $Command } from "@smithy/smithy-client";
 import { MetadataBearer as __MetadataBearer } from "@smithy/types";
-import { StartReadSetImportJobRequest, StartReadSetImportJobResponse } from "../models/models_0";
+import { StartReadSetImportJobRequest, StartReadSetImportJobResponse } from "../models/models_1";
 import { OmicsClientResolvedConfig, ServiceInputTypes, ServiceOutputTypes } from "../OmicsClient";
 /**
  * @public
@@ -27,7 +27,7 @@ declare const StartReadSetImportJobCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Starts a read set import job.</p>
+ * <p>Imports a read set from the sequence store. Read set import jobs support a maximum of 100 read sets of different types. Monitor the progress of your read set import job by calling the <code>GetReadSetImportJob</code> API operation.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/StartReferenceImportJobCommand.d.ts

@@ -27,7 +27,7 @@ declare const StartReferenceImportJobCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Starts a reference import job.</p>
+ * <p>Imports a reference genome from Amazon S3 into a specified reference store. You can have multiple reference genomes in a reference store. You can only import reference genomes one at a time into each reference store. Monitor the status of your reference import job by using the <code>GetReferenceImportJob</code> API operation.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/StartRunCommand.d.ts

@@ -46,7 +46,7 @@ declare const StartRunCommand_base: {
  *   priority: Number("int"),
  *   parameters: "DOCUMENT_VALUE",
  *   storageCapacity: Number("int"),
- *   outputUri: "STRING_VALUE",
+ *   outputUri: "STRING_VALUE", // required
  *   logLevel: "STRING_VALUE",
  *   tags: { // TagMap
  *     "<keys>": "STRING_VALUE",

package/dist-types/commands/UpdateSequenceStoreCommand.d.ts

@@ -1,6 +1,6 @@
 import { Command as $Command } from "@smithy/smithy-client";
 import { MetadataBearer as __MetadataBearer } from "@smithy/types";
-import { UpdateSequenceStoreRequest, UpdateSequenceStoreResponse } from "../models/models_0";
+import { UpdateSequenceStoreRequest, UpdateSequenceStoreResponse } from "../models/models_1";
 import { OmicsClientResolvedConfig, ServiceInputTypes, ServiceOutputTypes } from "../OmicsClient";
 /**
  * @public