@aws-sdk/client-omics 3.846.0 → 3.853.0

package/README.md

@@ -6,7 +6,7 @@
 
 AWS SDK for JavaScript Omics Client for Node.js, Browser and React Native.
 
-<p>This is the <i>AWS HealthOmics API Reference</i>. For an introduction to the service, see <a href="https://docs.aws.amazon.com/omics/latest/dev/">What is AWS HealthOmics?</a> in the <i>AWS HealthOmics User Guide</i>.</p>
+<p>Amazon Web Services HealthOmics is a service that helps users such as bioinformaticians, researchers, and scientists to store, query, analyze, and generate insights from genomics and other biological data. It simplifies and accelerates the process of storing and analyzing genomic information for Amazon Web Services.</p> <p>For an introduction to the service, see <a href="https://docs.aws.amazon.com/omics/latest/dev/what-is-healthomics.html">What is Amazon Web Services HealthOmics?</a> in the <i>Amazon Web Services HealthOmics User Guide</i>.</p>
 
 ## Installing
 

package/dist-cjs/index.js

@@ -148,6 +148,7 @@ __export(index_exports, {
   ServiceQuotaExceededException: () => ServiceQuotaExceededException,
   ShareResourceType: () => ShareResourceType,
   ShareStatus: () => ShareStatus,
+  SourceReferenceType: () => SourceReferenceType,
   StartAnnotationImportJobCommand: () => StartAnnotationImportJobCommand,
   StartReadSetActivationJobCommand: () => StartReadSetActivationJobCommand,
   StartReadSetExportJobCommand: () => StartReadSetExportJobCommand,
@@ -839,6 +840,11 @@ var SequenceStoreStatus = {
   FAILED: "FAILED",
   UPDATING: "UPDATING"
 };
+var SourceReferenceType = {
+  BRANCH: "BRANCH",
+  COMMIT: "COMMIT",
+  TAG: "TAG"
+};
 var WorkflowEngine = {
   CWL: "CWL",
   NEXTFLOW: "NEXTFLOW",
@@ -1016,7 +1022,8 @@ var StoreType = {
   SEQUENCE_STORE: "SEQUENCE_STORE"
 };
 var WorkflowExport = {
-  DEFINITION: "DEFINITION"
+  DEFINITION: "DEFINITION",
+  README: "README"
 };
 var ResourceOwner = {
   /**
@@ -1034,9 +1041,6 @@ var GetReadSetResponseFilterSensitiveLog = /* @__PURE__ */ __name((obj) => ({
 var GetReferenceResponseFilterSensitiveLog = /* @__PURE__ */ __name((obj) => ({
   ...obj
 }), "GetReferenceResponseFilterSensitiveLog");
-var UploadReadSetPartRequestFilterSensitiveLog = /* @__PURE__ */ __name((obj) => ({
-  ...obj
-}), "UploadReadSetPartRequestFilterSensitiveLog");
 
 // src/protocols/Aws_restJson1.ts
 var se_AbortMultipartReadSetUploadCommand = /* @__PURE__ */ __name(async (input, context) => {
@@ -1441,6 +1445,7 @@ var se_CreateWorkflowCommand = /* @__PURE__ */ __name(async (input, context) =>
   body = JSON.stringify(
     (0, import_smithy_client.take)(input, {
       accelerators: [],
+      definitionRepository: /* @__PURE__ */ __name((_) => (0, import_smithy_client._json)(_), "definitionRepository"),
       definitionUri: [],
       definitionZip: /* @__PURE__ */ __name((_) => context.base64Encoder(_), "definitionZip"),
       description: [],
@@ -1448,10 +1453,15 @@ var se_CreateWorkflowCommand = /* @__PURE__ */ __name(async (input, context) =>
       main: [],
       name: [],
       parameterTemplate: /* @__PURE__ */ __name((_) => (0, import_smithy_client._json)(_), "parameterTemplate"),
+      parameterTemplatePath: [],
+      readmeMarkdown: [],
+      readmePath: [],
+      readmeUri: [],
       requestId: [true, (_) => _ ?? (0, import_uuid.v4)()],
       storageCapacity: [],
       storageType: [],
-      tags: /* @__PURE__ */ __name((_) => (0, import_smithy_client._json)(_), "tags")
+      tags: /* @__PURE__ */ __name((_) => (0, import_smithy_client._json)(_), "tags"),
+      workflowBucketOwnerId: []
     })
   );
   let { hostname: resolvedHostname } = await context.endpoint();
@@ -1476,12 +1486,17 @@ var se_CreateWorkflowVersionCommand = /* @__PURE__ */ __name(async (input, conte
   body = JSON.stringify(
     (0, import_smithy_client.take)(input, {
       accelerators: [],
+      definitionRepository: /* @__PURE__ */ __name((_) => (0, import_smithy_client._json)(_), "definitionRepository"),
       definitionUri: [],
       definitionZip: /* @__PURE__ */ __name((_) => context.base64Encoder(_), "definitionZip"),
       description: [],
       engine: [],
       main: [],
       parameterTemplate: /* @__PURE__ */ __name((_) => (0, import_smithy_client._json)(_), "parameterTemplate"),
+      parameterTemplatePath: [],
+      readmeMarkdown: [],
+      readmePath: [],
+      readmeUri: [],
       requestId: [true, (_) => _ ?? (0, import_uuid.v4)()],
       storageCapacity: [],
       storageType: [],
@@ -3191,6 +3206,7 @@ var se_UpdateWorkflowCommand = /* @__PURE__ */ __name(async (input, context) =>
     (0, import_smithy_client.take)(input, {
       description: [],
       name: [],
+      readmeMarkdown: [],
       storageCapacity: [],
       storageType: []
     })
@@ -3218,6 +3234,7 @@ var se_UpdateWorkflowVersionCommand = /* @__PURE__ */ __name(async (input, conte
   body = JSON.stringify(
     (0, import_smithy_client.take)(input, {
       description: [],
+      readmeMarkdown: [],
       storageCapacity: [],
       storageType: []
     })
@@ -4205,6 +4222,7 @@ var de_GetWorkflowCommand = /* @__PURE__ */ __name(async (output, context) => {
     arn: import_smithy_client.expectString,
     creationTime: /* @__PURE__ */ __name((_) => (0, import_smithy_client.expectNonNull)((0, import_smithy_client.parseRfc3339DateTimeWithOffset)(_)), "creationTime"),
     definition: import_smithy_client.expectString,
+    definitionRepositoryDetails: import_smithy_client._json,
     description: import_smithy_client.expectString,
     digest: import_smithy_client.expectString,
     engine: import_smithy_client.expectString,
@@ -4213,6 +4231,8 @@ var de_GetWorkflowCommand = /* @__PURE__ */ __name(async (output, context) => {
     metadata: import_smithy_client._json,
     name: import_smithy_client.expectString,
     parameterTemplate: import_smithy_client._json,
+    readme: import_smithy_client.expectString,
+    readmePath: import_smithy_client.expectString,
     status: import_smithy_client.expectString,
     statusMessage: import_smithy_client.expectString,
     storageCapacity: import_smithy_client.expectInt32,
@@ -4237,12 +4257,15 @@ var de_GetWorkflowVersionCommand = /* @__PURE__ */ __name(async (output, context
     arn: import_smithy_client.expectString,
     creationTime: /* @__PURE__ */ __name((_) => (0, import_smithy_client.expectNonNull)((0, import_smithy_client.parseRfc3339DateTimeWithOffset)(_)), "creationTime"),
     definition: import_smithy_client.expectString,
+    definitionRepositoryDetails: import_smithy_client._json,
     description: import_smithy_client.expectString,
     digest: import_smithy_client.expectString,
     engine: import_smithy_client.expectString,
     main: import_smithy_client.expectString,
     metadata: import_smithy_client._json,
     parameterTemplate: import_smithy_client._json,
+    readme: import_smithy_client.expectString,
+    readmePath: import_smithy_client.expectString,
     status: import_smithy_client.expectString,
     statusMessage: import_smithy_client.expectString,
     storageCapacity: import_smithy_client.expectInt32,
@@ -7021,6 +7044,13 @@ var UpdateWorkflowVersionCommand = class extends import_smithy_client.Command.cl
 
 
 
+
+// src/models/models_1.ts
+var UploadReadSetPartRequestFilterSensitiveLog = /* @__PURE__ */ __name((obj) => ({
+  ...obj
+}), "UploadReadSetPartRequestFilterSensitiveLog");
+
+// src/commands/UploadReadSetPartCommand.ts
 var UploadReadSetPartCommand = class extends import_smithy_client.Command.classBuilder().ep(commonParams).m(function(Command, cs, config, o) {
   return [
     (0, import_middleware_serde.getSerdePlugin)(config, this.serialize, this.deserialize),
@@ -8597,6 +8627,7 @@ var waitUntilWorkflowVersionActive = /* @__PURE__ */ __name(async (params, input
   RunCacheStatus,
   ETagAlgorithmFamily,
   SequenceStoreStatus,
+  SourceReferenceType,
   WorkflowEngine,
   StorageType,
   WorkflowStatus,

package/dist-es/commands/UploadReadSetPartCommand.js

@@ -2,7 +2,7 @@ import { getEndpointPlugin } from "@smithy/middleware-endpoint";
 import { getSerdePlugin } from "@smithy/middleware-serde";
 import { Command as $Command } from "@smithy/smithy-client";
 import { commonParams } from "../endpoint/EndpointParameters";
-import { UploadReadSetPartRequestFilterSensitiveLog, } from "../models/models_0";
+import { UploadReadSetPartRequestFilterSensitiveLog, } from "../models/models_1";
 import { de_UploadReadSetPartCommand, se_UploadReadSetPartCommand } from "../protocols/Aws_restJson1";
 export { $Command };
 export class UploadReadSetPartCommand extends $Command

package/dist-es/models/models_0.js

@@ -257,6 +257,11 @@ export const SequenceStoreStatus = {
     FAILED: "FAILED",
     UPDATING: "UPDATING",
 };
+export const SourceReferenceType = {
+    BRANCH: "BRANCH",
+    COMMIT: "COMMIT",
+    TAG: "TAG",
+};
 export const WorkflowEngine = {
     CWL: "CWL",
     NEXTFLOW: "NEXTFLOW",
@@ -420,6 +425,7 @@ export const StoreType = {
 };
 export const WorkflowExport = {
     DEFINITION: "DEFINITION",
+    README: "README",
 };
 export const ResourceOwner = {
     OTHER: "OTHER",
@@ -431,6 +437,3 @@ export const GetReadSetResponseFilterSensitiveLog = (obj) => ({
 export const GetReferenceResponseFilterSensitiveLog = (obj) => ({
     ...obj,
 });
-export const UploadReadSetPartRequestFilterSensitiveLog = (obj) => ({
-    ...obj,
-});

package/dist-es/models/models_1.js

@@ -1 +1,3 @@
-export {};
+export const UploadReadSetPartRequestFilterSensitiveLog = (obj) => ({
+    ...obj,
+});

package/dist-es/protocols/Aws_restJson1.js

@@ -384,6 +384,7 @@ export const se_CreateWorkflowCommand = async (input, context) => {
     let body;
     body = JSON.stringify(take(input, {
         accelerators: [],
+        definitionRepository: (_) => _json(_),
         definitionUri: [],
         definitionZip: (_) => context.base64Encoder(_),
         description: [],
@@ -391,10 +392,15 @@ export const se_CreateWorkflowCommand = async (input, context) => {
         main: [],
         name: [],
         parameterTemplate: (_) => _json(_),
+        parameterTemplatePath: [],
+        readmeMarkdown: [],
+        readmePath: [],
+        readmeUri: [],
         requestId: [true, (_) => _ ?? generateIdempotencyToken()],
         storageCapacity: [],
         storageType: [],
         tags: (_) => _json(_),
+        workflowBucketOwnerId: [],
     }));
     let { hostname: resolvedHostname } = await context.endpoint();
     if (context.disableHostPrefix !== true) {
@@ -417,12 +423,17 @@ export const se_CreateWorkflowVersionCommand = async (input, context) => {
     let body;
     body = JSON.stringify(take(input, {
         accelerators: [],
+        definitionRepository: (_) => _json(_),
         definitionUri: [],
         definitionZip: (_) => context.base64Encoder(_),
         description: [],
         engine: [],
         main: [],
         parameterTemplate: (_) => _json(_),
+        parameterTemplatePath: [],
+        readmeMarkdown: [],
+        readmePath: [],
+        readmeUri: [],
         requestId: [true, (_) => _ ?? generateIdempotencyToken()],
         storageCapacity: [],
         storageType: [],
@@ -2068,6 +2079,7 @@ export const se_UpdateWorkflowCommand = async (input, context) => {
     body = JSON.stringify(take(input, {
         description: [],
         name: [],
+        readmeMarkdown: [],
         storageCapacity: [],
         storageType: [],
     }));
@@ -2093,6 +2105,7 @@ export const se_UpdateWorkflowVersionCommand = async (input, context) => {
     let body;
     body = JSON.stringify(take(input, {
         description: [],
+        readmeMarkdown: [],
         storageCapacity: [],
         storageType: [],
     }));
@@ -3079,6 +3092,7 @@ export const de_GetWorkflowCommand = async (output, context) => {
         arn: __expectString,
         creationTime: (_) => __expectNonNull(__parseRfc3339DateTimeWithOffset(_)),
         definition: __expectString,
+        definitionRepositoryDetails: _json,
         description: __expectString,
         digest: __expectString,
         engine: __expectString,
@@ -3087,6 +3101,8 @@ export const de_GetWorkflowCommand = async (output, context) => {
         metadata: _json,
         name: __expectString,
         parameterTemplate: _json,
+        readme: __expectString,
+        readmePath: __expectString,
         status: __expectString,
         statusMessage: __expectString,
         storageCapacity: __expectInt32,
@@ -3111,12 +3127,15 @@ export const de_GetWorkflowVersionCommand = async (output, context) => {
         arn: __expectString,
         creationTime: (_) => __expectNonNull(__parseRfc3339DateTimeWithOffset(_)),
         definition: __expectString,
+        definitionRepositoryDetails: _json,
         description: __expectString,
         digest: __expectString,
         engine: __expectString,
         main: __expectString,
         metadata: _json,
         parameterTemplate: _json,
+        readme: __expectString,
+        readmePath: __expectString,
         status: __expectString,
         statusMessage: __expectString,
         storageCapacity: __expectInt32,

package/dist-types/Omics.d.ts

@@ -685,7 +685,7 @@ export interface Omics {
     uploadReadSetPart(args: UploadReadSetPartCommandInput, options: __HttpHandlerOptions, cb: (err: any, data?: UploadReadSetPartCommandOutput) => void): void;
 }
 /**
- * <p>This is the <i>AWS HealthOmics API Reference</i>. For an introduction to the service, see <a href="https://docs.aws.amazon.com/omics/latest/dev/">What is AWS HealthOmics?</a> in the <i>AWS HealthOmics User Guide</i>.</p>
+ * <p>Amazon Web Services HealthOmics is a service that helps users such as bioinformaticians, researchers, and scientists to store, query, analyze, and generate insights from genomics and other biological data. It simplifies and accelerates the process of storing and analyzing genomic information for Amazon Web Services.</p> <p>For an introduction to the service, see <a href="https://docs.aws.amazon.com/omics/latest/dev/what-is-healthomics.html">What is Amazon Web Services HealthOmics?</a> in the <i>Amazon Web Services HealthOmics User Guide</i>.</p>
  * @public
  */
 export declare class Omics extends OmicsClient implements Omics {

package/dist-types/OmicsClient.d.ts

@@ -270,7 +270,7 @@ export type OmicsClientResolvedConfigType = __SmithyResolvedConfiguration<__Http
 export interface OmicsClientResolvedConfig extends OmicsClientResolvedConfigType {
 }
 /**
- * <p>This is the <i>AWS HealthOmics API Reference</i>. For an introduction to the service, see <a href="https://docs.aws.amazon.com/omics/latest/dev/">What is AWS HealthOmics?</a> in the <i>AWS HealthOmics User Guide</i>.</p>
+ * <p>Amazon Web Services HealthOmics is a service that helps users such as bioinformaticians, researchers, and scientists to store, query, analyze, and generate insights from genomics and other biological data. It simplifies and accelerates the process of storing and analyzing genomic information for Amazon Web Services.</p> <p>For an introduction to the service, see <a href="https://docs.aws.amazon.com/omics/latest/dev/what-is-healthomics.html">What is Amazon Web Services HealthOmics?</a> in the <i>Amazon Web Services HealthOmics User Guide</i>.</p>
  * @public
  */
 export declare class OmicsClient extends __Client<__HttpHandlerOptions, ServiceInputTypes, ServiceOutputTypes, OmicsClientResolvedConfig> {

package/dist-types/commands/CancelRunCommand.d.ts

@@ -27,7 +27,7 @@ declare const CancelRunCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Cancels a run.</p>
+ * <p>Cancels a run using its ID and returns a response with no body if the operation is successful. To confirm that the run has been cancelled, use the <code>ListRuns</code> API operation to check that it is no longer listed.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/CreateRunCacheCommand.d.ts

@@ -27,7 +27,7 @@ declare const CreateRunCacheCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>You can create a run cache to save the task outputs from completed tasks in a run for a private workflow. Subsequent runs use the task outputs from the cache, rather than computing the task outputs again. You specify an Amazon S3 location where Amazon Web Services HealthOmics saves the cached data. This data must be immediately accessible (not in an archived state).</p> <p>For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/workflow-cache-create.html">Creating a run cache</a> in the Amazon Web Services HealthOmics User Guide.</p>
+ * <p>Creates a run cache to store and reference task outputs from completed private runs. Specify an Amazon S3 location where Amazon Web Services HealthOmics saves the cached data. This data must be immediately accessible and not in an archived state. You can save intermediate task files to a run cache if they are declared as task outputs in the workflow definition file.</p> <p>For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/workflows-call-caching.html">Call caching</a> and <a href="https://docs.aws.amazon.com/omics/latest/dev/workflow-cache-create.html">Creating a run cache</a> in the <i>Amazon Web Services HealthOmics User Guide</i>.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/CreateRunGroupCommand.d.ts

@@ -27,7 +27,7 @@ declare const CreateRunGroupCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>You can optionally create a run group to limit the compute resources for the runs that you add to the group.</p>
+ * <p>Creates a run group to limit the compute resources for the runs that are added to the group. Returns an ARN, ID, and tags for the run group.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/CreateWorkflowCommand.d.ts

@@ -27,7 +27,7 @@ declare const CreateWorkflowCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Creates a private workflow.Private workflows depend on a variety of resources that you create and configure before creating the workflow:</p> <ul> <li> <p> <i>Input data</i>: Input data for the workflow, stored in an S3 bucket or a Amazon Web Services HealthOmics sequence store. </p> </li> <li> <p> <i>Workflow definition files</i>: Define your workflow in one or more workflow definition files, written in WDL, Nextflow, or CWL. The workflow definition specifies the inputs and outputs for runs that use the workflow. It also includes specifications for the runs and run tasks for your workflow, including compute and memory requirements.</p> </li> <li> <p> <i>Parameter template files</i>: Define run parameters using a parameter template file (written in JSON). </p> </li> <li> <p> <i>ECR container images</i>: Create one or more container images for the workflow. Store the images in a private ECR repository.</p> </li> <li> <p>(Optional) <i>Sentieon licenses</i>: Request a Sentieon license if you plan to use Sentieon software in a private workflow.</p> </li> </ul> <p>For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/creating-private-workflows.html">Creating or updating a private workflow in Amazon Web Services HealthOmics</a> in the Amazon Web Services HealthOmics User Guide.</p>
+ * <p>Creates a private workflow. Before you create a private workflow, you must create and configure these required resources:</p> <ul> <li> <p> <i>Workflow definition files</i>: Define your workflow in one or more workflow definition files, written in WDL, Nextflow, or CWL. The workflow definition specifies the inputs and outputs for runs that use the workflow. It also includes specifications for the runs and run tasks for your workflow, including compute and memory requirements. The workflow definition file must be in .zip format.</p> </li> <li> <p>(Optional) <i>Parameter template</i>: You can create a parameter template file that defines the run parameters, or Amazon Web Services HealthOmics can generate the parameter template for you.</p> </li> <li> <p> <i>ECR container images</i>: Create one or more container images for the workflow. Store the images in a private ECR repository.</p> </li> <li> <p>(Optional) <i>Sentieon licenses</i>: Request a Sentieon license if using the Sentieon software in a private workflow.</p> </li> </ul> <p>For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/creating-private-workflows.html">Creating or updating a private workflow in Amazon Web Services HealthOmics</a> in the <i>Amazon Web Services HealthOmics User Guide</i>.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript
@@ -54,6 +54,22 @@ declare const CreateWorkflowCommand_base: {
  *   requestId: "STRING_VALUE", // required
  *   accelerators: "STRING_VALUE",
  *   storageType: "STRING_VALUE",
+ *   readmeMarkdown: "STRING_VALUE",
+ *   parameterTemplatePath: "STRING_VALUE",
+ *   readmePath: "STRING_VALUE",
+ *   definitionRepository: { // DefinitionRepository
+ *     connectionArn: "STRING_VALUE", // required
+ *     fullRepositoryId: "STRING_VALUE", // required
+ *     sourceReference: { // SourceReference
+ *       type: "STRING_VALUE", // required
+ *       value: "STRING_VALUE", // required
+ *     },
+ *     excludeFilePatterns: [ // ExcludeFilePatternList
+ *       "STRING_VALUE",
+ *     ],
+ *   },
+ *   workflowBucketOwnerId: "STRING_VALUE",
+ *   readmeUri: "STRING_VALUE",
  * };
  * const command = new CreateWorkflowCommand(input);
  * const response = await client.send(command);

package/dist-types/commands/CreateWorkflowVersionCommand.d.ts

@@ -27,7 +27,7 @@ declare const CreateWorkflowVersionCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Creates a new workflow version for the workflow that you specify with the <code>workflowId</code> parameter.</p> <p>When you create a new version of a workflow, you need to specify the configuration for the new version. It doesn't inherit any configuration values from the workflow.</p> <p>Provide a version name that is unique for this workflow. You cannot change the name after HealthOmics creates the version.</p> <note> <p>Don’t include any personally identifiable information (PII) in the version name. Version names appear in the workflow version ARN.</p> </note> <p>For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/workflow-versions.html">Workflow versioning in Amazon Web Services HealthOmics</a> in the Amazon Web Services HealthOmics User Guide.</p>
+ * <p>Creates a new workflow version for the workflow that you specify with the <code>workflowId</code> parameter.</p> <p>When you create a new version of a workflow, you need to specify the configuration for the new version. It doesn't inherit any configuration values from the workflow.</p> <p>Provide a version name that is unique for this workflow. You cannot change the name after HealthOmics creates the version.</p> <note> <p>Don’t include any personally identifiable information (PII) in the version name. Version names appear in the workflow version ARN.</p> </note> <p>For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/workflow-versions.html">Workflow versioning in Amazon Web Services HealthOmics</a> in the <i>Amazon Web Services HealthOmics User Guide</i>.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript
@@ -56,6 +56,21 @@ declare const CreateWorkflowVersionCommand_base: {
  *     "<keys>": "STRING_VALUE",
  *   },
  *   workflowBucketOwnerId: "STRING_VALUE",
+ *   readmeMarkdown: "STRING_VALUE",
+ *   parameterTemplatePath: "STRING_VALUE",
+ *   readmePath: "STRING_VALUE",
+ *   definitionRepository: { // DefinitionRepository
+ *     connectionArn: "STRING_VALUE", // required
+ *     fullRepositoryId: "STRING_VALUE", // required
+ *     sourceReference: { // SourceReference
+ *       type: "STRING_VALUE", // required
+ *       value: "STRING_VALUE", // required
+ *     },
+ *     excludeFilePatterns: [ // ExcludeFilePatternList
+ *       "STRING_VALUE",
+ *     ],
+ *   },
+ *   readmeUri: "STRING_VALUE",
  * };
  * const command = new CreateWorkflowVersionCommand(input);
  * const response = await client.send(command);

package/dist-types/commands/DeleteRunCacheCommand.d.ts

@@ -27,7 +27,7 @@ declare const DeleteRunCacheCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Delete a run cache. This action removes the cache metadata stored in the service account, but doesn't delete the data in Amazon S3. You can access the cache data in Amazon S3, for inspection or to troubleshoot issues. You can remove old cache data using standard S3 <code>Delete</code> operations. </p> <p>For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/workflow-cache-delete.html">Deleting a run cache</a> in the Amazon Web Services HealthOmics User Guide.</p>
+ * <p>Deletes a run cache and returns a response with no body if the operation is successful. This action removes the cache metadata stored in the service account, but does not delete the data in Amazon S3. You can access the cache data in Amazon S3, for inspection or to troubleshoot issues. You can remove old cache data using standard S3 <code>Delete</code> operations. </p> <p>For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/workflow-cache-delete.html">Deleting a run cache</a> in the <i>Amazon Web Services HealthOmics User Guide</i>.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/DeleteRunCommand.d.ts

@@ -27,7 +27,7 @@ declare const DeleteRunCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Deletes a workflow run.</p>
+ * <p>Deletes a run and returns a response with no body if the operation is successful. You can only delete a run that has reached a <code>COMPLETED</code>, <code>FAILED</code>, or <code>CANCELLED</code> stage. A completed run has delivered an output, or was cancelled and resulted in no output. When you delete a run, only the metadata associated with the run is deleted. The run outputs remain in Amazon S3 and logs remain in CloudWatch.</p> <p>To verify that the workflow is deleted:</p> <ul> <li> <p>Use <code>ListRuns</code> to confirm the workflow no longer appears in the list.</p> </li> <li> <p>Use <code>GetRun</code> to verify the workflow cannot be found.</p> </li> </ul>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/DeleteRunGroupCommand.d.ts

@@ -27,7 +27,7 @@ declare const DeleteRunGroupCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Deletes a workflow run group.</p>
+ * <p>Deletes a run group and returns a response with no body if the operation is successful.</p> <p>To verify that the run group is deleted:</p> <ul> <li> <p>Use <code>ListRunGroups</code> to confirm the workflow no longer appears in the list.</p> </li> <li> <p>Use <code>GetRunGroup</code> to verify the workflow cannot be found.</p> </li> </ul>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/DeleteWorkflowCommand.d.ts

@@ -27,7 +27,7 @@ declare const DeleteWorkflowCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Deletes a workflow.</p>
+ * <p>Deletes a workflow by specifying its ID. No response is returned if the deletion is successful.</p> <p>To verify that the workflow is deleted:</p> <ul> <li> <p>Use <code>ListWorkflows</code> to confirm the workflow no longer appears in the list.</p> </li> <li> <p>Use <code>GetWorkflow</code> to verify the workflow cannot be found.</p> </li> </ul>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/DeleteWorkflowVersionCommand.d.ts

@@ -27,7 +27,7 @@ declare const DeleteWorkflowVersionCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Deletes a workflow version. Deleting a workflow version doesn't affect any ongoing runs that are using the workflow version.</p> <p>For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/workflow-versions.html">Workflow versioning in Amazon Web Services HealthOmics</a> in the Amazon Web Services HealthOmics User Guide.</p>
+ * <p>Deletes a workflow version. Deleting a workflow version doesn't affect any ongoing runs that are using the workflow version.</p> <p>For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/workflow-versions.html">Workflow versioning in Amazon Web Services HealthOmics</a> in the <i>Amazon Web Services HealthOmics User Guide</i>.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/GetRunCacheCommand.d.ts

@@ -27,7 +27,7 @@ declare const GetRunCacheCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Retrieve the details for the specified run cache.</p> <p>For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/workflow-call-caching.html">Call caching for Amazon Web Services HealthOmics runs</a> in the Amazon Web Services HealthOmics User Guide.</p>
+ * <p>Retrieves detailed information about the specified run cache using its ID.</p> <p>For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/workflows-call-caching.html">Call caching for Amazon Web Services HealthOmics runs</a> in the <i>Amazon Web Services HealthOmics User Guide</i>.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/GetRunCommand.d.ts

@@ -27,7 +27,7 @@ declare const GetRunCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Gets information about a workflow run.</p> <p>If a workflow is shared with you, you cannot export information about the run.</p> <p>Amazon Web Services HealthOmics stores a fixed number of runs that are available to the console and API. If GetRun doesn't return the requested run, you can find run logs for all runs in the CloudWatch logs. For more information about viewing the run logs, see <a href="https://docs.aws.amazon.com/omics/latest/dev/cloudwatch-logs.html">CloudWatch logs</a> in the <i>in the Amazon Web Services HealthOmics User Guide</i>.</p>
+ * <p>Gets detailed information about a specific run using its ID.</p> <p>Amazon Web Services HealthOmics stores a configurable number of runs, as determined by service limits, that are available to the console and API. If <code>GetRun</code> does not return the requested run, you can find all run logs in the CloudWatch logs. For more information about viewing the run logs, see <a href="https://docs.aws.amazon.com/omics/latest/dev/monitoring-cloudwatch-logs.html">CloudWatch logs</a> in the <i>Amazon Web Services HealthOmics User Guide</i>.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/GetRunGroupCommand.d.ts

@@ -27,7 +27,7 @@ declare const GetRunGroupCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Gets information about a workflow run group.</p>
+ * <p>Gets information about a run group and returns its metadata.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/GetRunTaskCommand.d.ts

@@ -27,7 +27,7 @@ declare const GetRunTaskCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Gets information about a workflow run task.</p>
+ * <p>Gets detailed information about a run task using its ID.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/GetWorkflowCommand.d.ts

@@ -27,7 +27,7 @@ declare const GetWorkflowCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Gets information about a workflow.</p> <p>If a workflow is shared with you, you cannot export the workflow.</p>
+ * <p>Gets all information about a workflow using its ID.</p> <p>If a workflow is shared with you, you cannot export the workflow.</p> <p>For more information about your workflow status, see <a href="https://docs.aws.amazon.com/omics/latest/dev/using-get-workflow.html">Verify the workflow status</a> in the <i>Amazon Web Services HealthOmics User Guide</i>.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript
@@ -73,6 +73,18 @@ declare const GetWorkflowCommand_base: {
  * //   accelerators: "STRING_VALUE",
  * //   storageType: "STRING_VALUE",
  * //   uuid: "STRING_VALUE",
+ * //   readme: "STRING_VALUE",
+ * //   definitionRepositoryDetails: { // DefinitionRepositoryDetails
+ * //     connectionArn: "STRING_VALUE",
+ * //     fullRepositoryId: "STRING_VALUE",
+ * //     sourceReference: { // SourceReference
+ * //       type: "STRING_VALUE", // required
+ * //       value: "STRING_VALUE", // required
+ * //     },
+ * //     providerType: "STRING_VALUE",
+ * //     providerEndpoint: "STRING_VALUE",
+ * //   },
+ * //   readmePath: "STRING_VALUE",
  * // };
  *
  * ```

package/dist-types/commands/GetWorkflowVersionCommand.d.ts

@@ -27,7 +27,7 @@ declare const GetWorkflowVersionCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Gets information about a workflow version. For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/workflow-versions.html">Workflow versioning in Amazon Web Services HealthOmics</a> in the Amazon Web Services HealthOmics User Guide.</p>
+ * <p>Gets information about a workflow version. For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/workflow-versions.html">Workflow versioning in Amazon Web Services HealthOmics</a> in the <i>Amazon Web Services HealthOmics User Guide</i>.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript
@@ -75,6 +75,18 @@ declare const GetWorkflowVersionCommand_base: {
  * //   },
  * //   uuid: "STRING_VALUE",
  * //   workflowBucketOwnerId: "STRING_VALUE",
+ * //   readme: "STRING_VALUE",
+ * //   definitionRepositoryDetails: { // DefinitionRepositoryDetails
+ * //     connectionArn: "STRING_VALUE",
+ * //     fullRepositoryId: "STRING_VALUE",
+ * //     sourceReference: { // SourceReference
+ * //       type: "STRING_VALUE", // required
+ * //       value: "STRING_VALUE", // required
+ * //     },
+ * //     providerType: "STRING_VALUE",
+ * //     providerEndpoint: "STRING_VALUE",
+ * //   },
+ * //   readmePath: "STRING_VALUE",
  * // };
  *
  * ```

package/dist-types/commands/ListRunCachesCommand.d.ts

@@ -27,7 +27,7 @@ declare const ListRunCachesCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Retrieves a list of your run caches.</p>
+ * <p>Retrieves a list of your run caches and the metadata for each cache.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/ListRunGroupsCommand.d.ts

@@ -27,7 +27,7 @@ declare const ListRunGroupsCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Retrieves a list of run groups.</p>
+ * <p>Retrieves a list of all run groups and returns the metadata for each run group.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/ListRunTasksCommand.d.ts

@@ -27,7 +27,7 @@ declare const ListRunTasksCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Retrieves a list of tasks for a run.</p>
+ * <p>Returns a list of tasks and status information within their specified run. Use this operation to monitor runs and to identify which specific tasks have failed.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript

package/dist-types/commands/ListRunsCommand.d.ts

@@ -27,7 +27,7 @@ declare const ListRunsCommand_base: {
     getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
 };
 /**
- * <p>Retrieves a list of runs.</p> <p>Amazon Web Services HealthOmics stores a fixed number of runs that are available to the console and API. If the ListRuns response doesn't include specific runs that you expected, you can find run logs for all runs in the CloudWatch logs. For more information about viewing the run logs, see <a href="https://docs.aws.amazon.com/omics/latest/dev/cloudwatch-logs.html">CloudWatch logs</a> in the <i>Amazon Web Services HealthOmics User Guide</i>.</p>
+ * <p>Retrieves a list of runs and returns each run's metadata and status.</p> <p>Amazon Web Services HealthOmics stores a configurable number of runs, as determined by service limits, that are available to the console and API. If the <code>ListRuns</code> response doesn't include specific runs that you expected, you can find all run logs in the CloudWatch logs. For more information about viewing the run logs, see <a href="https://docs.aws.amazon.com/omics/latest/dev/monitoring-cloudwatch-logs.html">CloudWatch logs</a> in the <i>Amazon Web Services HealthOmics User Guide</i>.</p>
  * @example
  * Use a bare-bones client and the command you need to make an API call.
  * ```javascript