@aws-sdk/client-omics 3.697.0 → 3.709.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (32) hide show
  1. package/README.md +32 -0
  2. package/dist-cjs/index.js +261 -5
  3. package/dist-es/Omics.js +8 -0
  4. package/dist-es/commands/DeleteS3AccessPolicyCommand.js +22 -0
  5. package/dist-es/commands/GetS3AccessPolicyCommand.js +22 -0
  6. package/dist-es/commands/PutS3AccessPolicyCommand.js +22 -0
  7. package/dist-es/commands/UpdateSequenceStoreCommand.js +22 -0
  8. package/dist-es/commands/index.js +4 -0
  9. package/dist-es/models/models_0.js +11 -0
  10. package/dist-es/protocols/Aws_restJson1.js +171 -2
  11. package/dist-types/Omics.d.ts +28 -0
  12. package/dist-types/OmicsClient.d.ts +6 -2
  13. package/dist-types/commands/CreateSequenceStoreCommand.d.ts +16 -0
  14. package/dist-types/commands/DeleteS3AccessPolicyCommand.d.ts +92 -0
  15. package/dist-types/commands/GetS3AccessPolicyCommand.d.ts +101 -0
  16. package/dist-types/commands/GetSequenceStoreCommand.d.ts +7 -0
  17. package/dist-types/commands/ListSequenceStoresCommand.d.ts +6 -0
  18. package/dist-types/commands/PutS3AccessPolicyCommand.d.ts +97 -0
  19. package/dist-types/commands/UpdateSequenceStoreCommand.d.ts +123 -0
  20. package/dist-types/commands/index.d.ts +4 -0
  21. package/dist-types/models/models_0.d.ts +333 -10
  22. package/dist-types/protocols/Aws_restJson1.d.ts +36 -0
  23. package/dist-types/ts3.4/Omics.d.ts +68 -0
  24. package/dist-types/ts3.4/OmicsClient.d.ts +24 -0
  25. package/dist-types/ts3.4/commands/DeleteS3AccessPolicyCommand.d.ts +51 -0
  26. package/dist-types/ts3.4/commands/GetS3AccessPolicyCommand.d.ts +51 -0
  27. package/dist-types/ts3.4/commands/PutS3AccessPolicyCommand.d.ts +51 -0
  28. package/dist-types/ts3.4/commands/UpdateSequenceStoreCommand.d.ts +51 -0
  29. package/dist-types/ts3.4/commands/index.d.ts +4 -0
  30. package/dist-types/ts3.4/models/models_0.d.ts +89 -5
  31. package/dist-types/ts3.4/protocols/Aws_restJson1.d.ts +48 -0
  32. package/package.json +37 -37
package/README.md CHANGED
@@ -395,6 +395,14 @@ DeleteRunGroup
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  [Command API Reference](https://docs.aws.amazon.com/AWSJavaScriptSDK/v3/latest/client/omics/command/DeleteRunGroupCommand/) / [Input](https://docs.aws.amazon.com/AWSJavaScriptSDK/v3/latest/Package/-aws-sdk-client-omics/Interface/DeleteRunGroupCommandInput/) / [Output](https://docs.aws.amazon.com/AWSJavaScriptSDK/v3/latest/Package/-aws-sdk-client-omics/Interface/DeleteRunGroupCommandOutput/)
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+ </details>
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+ <details>
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+ <summary>
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+ DeleteS3AccessPolicy
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+ </summary>
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+
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+ [Command API Reference](https://docs.aws.amazon.com/AWSJavaScriptSDK/v3/latest/client/omics/command/DeleteS3AccessPolicyCommand/) / [Input](https://docs.aws.amazon.com/AWSJavaScriptSDK/v3/latest/Package/-aws-sdk-client-omics/Interface/DeleteS3AccessPolicyCommandInput/) / [Output](https://docs.aws.amazon.com/AWSJavaScriptSDK/v3/latest/Package/-aws-sdk-client-omics/Interface/DeleteS3AccessPolicyCommandOutput/)
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+
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  </details>
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  <details>
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  <summary>
@@ -555,6 +563,14 @@ GetRunTask
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  [Command API Reference](https://docs.aws.amazon.com/AWSJavaScriptSDK/v3/latest/client/omics/command/GetRunTaskCommand/) / [Input](https://docs.aws.amazon.com/AWSJavaScriptSDK/v3/latest/Package/-aws-sdk-client-omics/Interface/GetRunTaskCommandInput/) / [Output](https://docs.aws.amazon.com/AWSJavaScriptSDK/v3/latest/Package/-aws-sdk-client-omics/Interface/GetRunTaskCommandOutput/)
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+ </details>
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+ <details>
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+ <summary>
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+ GetS3AccessPolicy
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+ </summary>
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+
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+ [Command API Reference](https://docs.aws.amazon.com/AWSJavaScriptSDK/v3/latest/client/omics/command/GetS3AccessPolicyCommand/) / [Input](https://docs.aws.amazon.com/AWSJavaScriptSDK/v3/latest/Package/-aws-sdk-client-omics/Interface/GetS3AccessPolicyCommandInput/) / [Output](https://docs.aws.amazon.com/AWSJavaScriptSDK/v3/latest/Package/-aws-sdk-client-omics/Interface/GetS3AccessPolicyCommandOutput/)
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+
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  </details>
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  <details>
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  <summary>
@@ -771,6 +787,14 @@ ListWorkflows
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  [Command API Reference](https://docs.aws.amazon.com/AWSJavaScriptSDK/v3/latest/client/omics/command/ListWorkflowsCommand/) / [Input](https://docs.aws.amazon.com/AWSJavaScriptSDK/v3/latest/Package/-aws-sdk-client-omics/Interface/ListWorkflowsCommandInput/) / [Output](https://docs.aws.amazon.com/AWSJavaScriptSDK/v3/latest/Package/-aws-sdk-client-omics/Interface/ListWorkflowsCommandOutput/)
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+ </details>
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+ <details>
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+ <summary>
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+ PutS3AccessPolicy
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+ </summary>
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+
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+ [Command API Reference](https://docs.aws.amazon.com/AWSJavaScriptSDK/v3/latest/client/omics/command/PutS3AccessPolicyCommand/) / [Input](https://docs.aws.amazon.com/AWSJavaScriptSDK/v3/latest/Package/-aws-sdk-client-omics/Interface/PutS3AccessPolicyCommandInput/) / [Output](https://docs.aws.amazon.com/AWSJavaScriptSDK/v3/latest/Package/-aws-sdk-client-omics/Interface/PutS3AccessPolicyCommandOutput/)
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+
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  </details>
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  <details>
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  <summary>
@@ -875,6 +899,14 @@ UpdateRunGroup
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  [Command API Reference](https://docs.aws.amazon.com/AWSJavaScriptSDK/v3/latest/client/omics/command/UpdateRunGroupCommand/) / [Input](https://docs.aws.amazon.com/AWSJavaScriptSDK/v3/latest/Package/-aws-sdk-client-omics/Interface/UpdateRunGroupCommandInput/) / [Output](https://docs.aws.amazon.com/AWSJavaScriptSDK/v3/latest/Package/-aws-sdk-client-omics/Interface/UpdateRunGroupCommandOutput/)
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+ </details>
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+ <details>
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+ <summary>
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+ UpdateSequenceStore
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+ </summary>
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+
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+ [Command API Reference](https://docs.aws.amazon.com/AWSJavaScriptSDK/v3/latest/client/omics/command/UpdateSequenceStoreCommand/) / [Input](https://docs.aws.amazon.com/AWSJavaScriptSDK/v3/latest/Package/-aws-sdk-client-omics/Interface/UpdateSequenceStoreCommandInput/) / [Output](https://docs.aws.amazon.com/AWSJavaScriptSDK/v3/latest/Package/-aws-sdk-client-omics/Interface/UpdateSequenceStoreCommandOutput/)
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+
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  </details>
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  <details>
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  <summary>
package/dist-cjs/index.js CHANGED
@@ -51,6 +51,7 @@ __export(src_exports, {
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  DeleteRunCacheCommand: () => DeleteRunCacheCommand,
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  DeleteRunCommand: () => DeleteRunCommand,
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  DeleteRunGroupCommand: () => DeleteRunGroupCommand,
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+ DeleteS3AccessPolicyCommand: () => DeleteS3AccessPolicyCommand,
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  DeleteSequenceStoreCommand: () => DeleteSequenceStoreCommand,
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  DeleteShareCommand: () => DeleteShareCommand,
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  DeleteVariantStoreCommand: () => DeleteVariantStoreCommand,
@@ -79,6 +80,7 @@ __export(src_exports, {
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  GetRunCommand: () => GetRunCommand,
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  GetRunGroupCommand: () => GetRunGroupCommand,
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  GetRunTaskCommand: () => GetRunTaskCommand,
83
+ GetS3AccessPolicyCommand: () => GetS3AccessPolicyCommand,
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  GetSequenceStoreCommand: () => GetSequenceStoreCommand,
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  GetShareCommand: () => GetShareCommand,
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  GetVariantImportJobCommand: () => GetVariantImportJobCommand,
@@ -112,6 +114,7 @@ __export(src_exports, {
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  Omics: () => Omics,
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  OmicsClient: () => OmicsClient,
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  OmicsServiceException: () => OmicsServiceException,
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+ PutS3AccessPolicyCommand: () => PutS3AccessPolicyCommand,
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  RangeNotSatisfiableException: () => RangeNotSatisfiableException,
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  ReadSetActivationJobItemStatus: () => ReadSetActivationJobItemStatus,
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  ReadSetActivationJobStatus: () => ReadSetActivationJobStatus,
@@ -137,6 +140,7 @@ __export(src_exports, {
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  RunRetentionMode: () => RunRetentionMode,
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  RunStatus: () => RunStatus,
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  SchemaValueType: () => SchemaValueType,
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+ SequenceStoreStatus: () => SequenceStoreStatus,
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  ServiceQuotaExceededException: () => ServiceQuotaExceededException,
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  ShareResourceType: () => ShareResourceType,
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  ShareStatus: () => ShareStatus,
@@ -151,6 +155,7 @@ __export(src_exports, {
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  StoreFormat: () => StoreFormat,
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  StoreOptions: () => StoreOptions,
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  StoreStatus: () => StoreStatus,
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+ StoreType: () => StoreType,
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  TagResourceCommand: () => TagResourceCommand,
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  TaskStatus: () => TaskStatus,
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  ThrottlingException: () => ThrottlingException,
@@ -159,6 +164,7 @@ __export(src_exports, {
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  UpdateAnnotationStoreVersionCommand: () => UpdateAnnotationStoreVersionCommand,
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  UpdateRunCacheCommand: () => UpdateRunCacheCommand,
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  UpdateRunGroupCommand: () => UpdateRunGroupCommand,
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+ UpdateSequenceStoreCommand: () => UpdateSequenceStoreCommand,
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  UpdateVariantStoreCommand: () => UpdateVariantStoreCommand,
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  UpdateWorkflowCommand: () => UpdateWorkflowCommand,
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  UploadReadSetPartCommand: () => UploadReadSetPartCommand,
@@ -809,6 +815,13 @@ var ETagAlgorithmFamily = {
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  SHA256UP: "SHA256up",
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  SHA512UP: "SHA512up"
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  };
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+ var SequenceStoreStatus = {
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+ ACTIVE: "ACTIVE",
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+ CREATING: "CREATING",
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+ DELETING: "DELETING",
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+ FAILED: "FAILED",
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+ UPDATING: "UPDATING"
824
+ };
812
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  var WorkflowEngine = {
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  CWL: "CWL",
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  NEXTFLOW: "NEXTFLOW",
@@ -980,6 +993,10 @@ var TaskStatus = {
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  STARTING: "STARTING",
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  STOPPING: "STOPPING"
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  };
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+ var StoreType = {
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+ REFERENCE_STORE: "REFERENCE_STORE",
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+ SEQUENCE_STORE: "SEQUENCE_STORE"
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+ };
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  var WorkflowExport = {
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  DEFINITION: "DEFINITION"
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  };
@@ -1322,11 +1339,13 @@ var se_CreateSequenceStoreCommand = /* @__PURE__ */ __name(async (input, context
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  let body;
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  body = JSON.stringify(
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  (0, import_smithy_client.take)(input, {
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- clientToken: [],
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+ clientToken: [true, (_) => _ ?? (0, import_uuid.v4)()],
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  description: [],
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  eTagAlgorithmFamily: [],
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  fallbackLocation: [],
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  name: [],
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+ propagatedSetLevelTags: (_) => (0, import_smithy_client._json)(_),
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+ s3AccessConfig: (_) => (0, import_smithy_client._json)(_),
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  sseConfig: (_) => (0, import_smithy_client._json)(_),
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  tags: (_) => (0, import_smithy_client._json)(_)
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  })
@@ -1560,6 +1579,23 @@ var se_DeleteRunGroupCommand = /* @__PURE__ */ __name(async (input, context) =>
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  b.m("DELETE").h(headers).b(body);
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  return b.build();
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  }, "se_DeleteRunGroupCommand");
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+ var se_DeleteS3AccessPolicyCommand = /* @__PURE__ */ __name(async (input, context) => {
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+ const b = (0, import_core.requestBuilder)(input, context);
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+ const headers = {};
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+ b.bp("/s3accesspolicy/{s3AccessPointArn}");
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+ b.p("s3AccessPointArn", () => input.s3AccessPointArn, "{s3AccessPointArn}", false);
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+ let body;
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+ let { hostname: resolvedHostname } = await context.endpoint();
1589
+ if (context.disableHostPrefix !== true) {
1590
+ resolvedHostname = "control-storage-" + resolvedHostname;
1591
+ if (!(0, import_protocol_http.isValidHostname)(resolvedHostname)) {
1592
+ throw new Error("ValidationError: prefixed hostname must be hostname compatible.");
1593
+ }
1594
+ }
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+ b.hn(resolvedHostname);
1596
+ b.m("DELETE").h(headers).b(body);
1597
+ return b.build();
1598
+ }, "se_DeleteS3AccessPolicyCommand");
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  var se_DeleteSequenceStoreCommand = /* @__PURE__ */ __name(async (input, context) => {
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  const b = (0, import_core.requestBuilder)(input, context);
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  const headers = {};
@@ -1926,6 +1962,23 @@ var se_GetRunTaskCommand = /* @__PURE__ */ __name(async (input, context) => {
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  b.m("GET").h(headers).b(body);
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  return b.build();
1928
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  }, "se_GetRunTaskCommand");
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+ var se_GetS3AccessPolicyCommand = /* @__PURE__ */ __name(async (input, context) => {
1966
+ const b = (0, import_core.requestBuilder)(input, context);
1967
+ const headers = {};
1968
+ b.bp("/s3accesspolicy/{s3AccessPointArn}");
1969
+ b.p("s3AccessPointArn", () => input.s3AccessPointArn, "{s3AccessPointArn}", false);
1970
+ let body;
1971
+ let { hostname: resolvedHostname } = await context.endpoint();
1972
+ if (context.disableHostPrefix !== true) {
1973
+ resolvedHostname = "control-storage-" + resolvedHostname;
1974
+ if (!(0, import_protocol_http.isValidHostname)(resolvedHostname)) {
1975
+ throw new Error("ValidationError: prefixed hostname must be hostname compatible.");
1976
+ }
1977
+ }
1978
+ b.hn(resolvedHostname);
1979
+ b.m("GET").h(headers).b(body);
1980
+ return b.build();
1981
+ }, "se_GetS3AccessPolicyCommand");
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  var se_GetSequenceStoreCommand = /* @__PURE__ */ __name(async (input, context) => {
1930
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  const b = (0, import_core.requestBuilder)(input, context);
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  const headers = {};
@@ -2582,6 +2635,30 @@ var se_ListWorkflowsCommand = /* @__PURE__ */ __name(async (input, context) => {
2582
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  b.m("GET").h(headers).q(query).b(body);
2583
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  return b.build();
2584
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  }, "se_ListWorkflowsCommand");
2638
+ var se_PutS3AccessPolicyCommand = /* @__PURE__ */ __name(async (input, context) => {
2639
+ const b = (0, import_core.requestBuilder)(input, context);
2640
+ const headers = {
2641
+ "content-type": "application/json"
2642
+ };
2643
+ b.bp("/s3accesspolicy/{s3AccessPointArn}");
2644
+ b.p("s3AccessPointArn", () => input.s3AccessPointArn, "{s3AccessPointArn}", false);
2645
+ let body;
2646
+ body = JSON.stringify(
2647
+ (0, import_smithy_client.take)(input, {
2648
+ s3AccessPolicy: (_) => import_smithy_client.LazyJsonString.from(_)
2649
+ })
2650
+ );
2651
+ let { hostname: resolvedHostname } = await context.endpoint();
2652
+ if (context.disableHostPrefix !== true) {
2653
+ resolvedHostname = "control-storage-" + resolvedHostname;
2654
+ if (!(0, import_protocol_http.isValidHostname)(resolvedHostname)) {
2655
+ throw new Error("ValidationError: prefixed hostname must be hostname compatible.");
2656
+ }
2657
+ }
2658
+ b.hn(resolvedHostname);
2659
+ b.m("PUT").h(headers).b(body);
2660
+ return b.build();
2661
+ }, "se_PutS3AccessPolicyCommand");
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  var se_StartAnnotationImportJobCommand = /* @__PURE__ */ __name(async (input, context) => {
2586
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  const b = (0, import_core.requestBuilder)(input, context);
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  const headers = {
@@ -2929,6 +3006,35 @@ var se_UpdateRunGroupCommand = /* @__PURE__ */ __name(async (input, context) =>
2929
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  b.m("POST").h(headers).b(body);
2930
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  return b.build();
2931
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  }, "se_UpdateRunGroupCommand");
3009
+ var se_UpdateSequenceStoreCommand = /* @__PURE__ */ __name(async (input, context) => {
3010
+ const b = (0, import_core.requestBuilder)(input, context);
3011
+ const headers = {
3012
+ "content-type": "application/json"
3013
+ };
3014
+ b.bp("/sequencestore/{id}");
3015
+ b.p("id", () => input.id, "{id}", false);
3016
+ let body;
3017
+ body = JSON.stringify(
3018
+ (0, import_smithy_client.take)(input, {
3019
+ clientToken: [true, (_) => _ ?? (0, import_uuid.v4)()],
3020
+ description: [],
3021
+ fallbackLocation: [],
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+ name: [],
3023
+ propagatedSetLevelTags: (_) => (0, import_smithy_client._json)(_),
3024
+ s3AccessConfig: (_) => (0, import_smithy_client._json)(_)
3025
+ })
3026
+ );
3027
+ let { hostname: resolvedHostname } = await context.endpoint();
3028
+ if (context.disableHostPrefix !== true) {
3029
+ resolvedHostname = "control-storage-" + resolvedHostname;
3030
+ if (!(0, import_protocol_http.isValidHostname)(resolvedHostname)) {
3031
+ throw new Error("ValidationError: prefixed hostname must be hostname compatible.");
3032
+ }
3033
+ }
3034
+ b.hn(resolvedHostname);
3035
+ b.m("PATCH").h(headers).b(body);
3036
+ return b.build();
3037
+ }, "se_UpdateSequenceStoreCommand");
2932
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  var se_UpdateVariantStoreCommand = /* @__PURE__ */ __name(async (input, context) => {
2933
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  const b = (0, import_core.requestBuilder)(input, context);
2934
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  const headers = {
@@ -3221,7 +3327,11 @@ var de_CreateSequenceStoreCommand = /* @__PURE__ */ __name(async (output, contex
3221
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  fallbackLocation: import_smithy_client.expectString,
3222
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  id: import_smithy_client.expectString,
3223
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  name: import_smithy_client.expectString,
3224
- sseConfig: import_smithy_client._json
3330
+ propagatedSetLevelTags: import_smithy_client._json,
3331
+ s3Access: import_smithy_client._json,
3332
+ sseConfig: import_smithy_client._json,
3333
+ status: import_smithy_client.expectString,
3334
+ statusMessage: import_smithy_client.expectString
3225
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  });
3226
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  Object.assign(contents, doc);
3227
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  return contents;
@@ -3355,6 +3465,16 @@ var de_DeleteRunGroupCommand = /* @__PURE__ */ __name(async (output, context) =>
3355
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  await (0, import_smithy_client.collectBody)(output.body, context);
3356
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  return contents;
3357
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  }, "de_DeleteRunGroupCommand");
3468
+ var de_DeleteS3AccessPolicyCommand = /* @__PURE__ */ __name(async (output, context) => {
3469
+ if (output.statusCode !== 200 && output.statusCode >= 300) {
3470
+ return de_CommandError(output, context);
3471
+ }
3472
+ const contents = (0, import_smithy_client.map)({
3473
+ $metadata: deserializeMetadata(output)
3474
+ });
3475
+ await (0, import_smithy_client.collectBody)(output.body, context);
3476
+ return contents;
3477
+ }, "de_DeleteS3AccessPolicyCommand");
3358
3478
  var de_DeleteSequenceStoreCommand = /* @__PURE__ */ __name(async (output, context) => {
3359
3479
  if (output.statusCode !== 200 && output.statusCode >= 300) {
3360
3480
  return de_CommandError(output, context);
@@ -3784,6 +3904,24 @@ var de_GetRunTaskCommand = /* @__PURE__ */ __name(async (output, context) => {
3784
3904
  Object.assign(contents, doc);
3785
3905
  return contents;
3786
3906
  }, "de_GetRunTaskCommand");
3907
+ var de_GetS3AccessPolicyCommand = /* @__PURE__ */ __name(async (output, context) => {
3908
+ if (output.statusCode !== 200 && output.statusCode >= 300) {
3909
+ return de_CommandError(output, context);
3910
+ }
3911
+ const contents = (0, import_smithy_client.map)({
3912
+ $metadata: deserializeMetadata(output)
3913
+ });
3914
+ const data = (0, import_smithy_client.expectNonNull)((0, import_smithy_client.expectObject)(await (0, import_core2.parseJsonBody)(output.body, context)), "body");
3915
+ const doc = (0, import_smithy_client.take)(data, {
3916
+ s3AccessPointArn: import_smithy_client.expectString,
3917
+ s3AccessPolicy: import_smithy_client.LazyJsonString.from,
3918
+ storeId: import_smithy_client.expectString,
3919
+ storeType: import_smithy_client.expectString,
3920
+ updateTime: (_) => (0, import_smithy_client.expectNonNull)((0, import_smithy_client.parseRfc3339DateTimeWithOffset)(_))
3921
+ });
3922
+ Object.assign(contents, doc);
3923
+ return contents;
3924
+ }, "de_GetS3AccessPolicyCommand");
3787
3925
  var de_GetSequenceStoreCommand = /* @__PURE__ */ __name(async (output, context) => {
3788
3926
  if (output.statusCode !== 200 && output.statusCode >= 300) {
3789
3927
  return de_CommandError(output, context);
@@ -3800,8 +3938,12 @@ var de_GetSequenceStoreCommand = /* @__PURE__ */ __name(async (output, context)
3800
3938
  fallbackLocation: import_smithy_client.expectString,
3801
3939
  id: import_smithy_client.expectString,
3802
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  name: import_smithy_client.expectString,
3941
+ propagatedSetLevelTags: import_smithy_client._json,
3803
3942
  s3Access: import_smithy_client._json,
3804
- sseConfig: import_smithy_client._json
3943
+ sseConfig: import_smithy_client._json,
3944
+ status: import_smithy_client.expectString,
3945
+ statusMessage: import_smithy_client.expectString,
3946
+ updateTime: (_) => (0, import_smithy_client.expectNonNull)((0, import_smithy_client.parseRfc3339DateTimeWithOffset)(_))
3805
3947
  });
3806
3948
  Object.assign(contents, doc);
3807
3949
  return contents;
@@ -4228,6 +4370,22 @@ var de_ListWorkflowsCommand = /* @__PURE__ */ __name(async (output, context) =>
4228
4370
  Object.assign(contents, doc);
4229
4371
  return contents;
4230
4372
  }, "de_ListWorkflowsCommand");
4373
+ var de_PutS3AccessPolicyCommand = /* @__PURE__ */ __name(async (output, context) => {
4374
+ if (output.statusCode !== 200 && output.statusCode >= 300) {
4375
+ return de_CommandError(output, context);
4376
+ }
4377
+ const contents = (0, import_smithy_client.map)({
4378
+ $metadata: deserializeMetadata(output)
4379
+ });
4380
+ const data = (0, import_smithy_client.expectNonNull)((0, import_smithy_client.expectObject)(await (0, import_core2.parseJsonBody)(output.body, context)), "body");
4381
+ const doc = (0, import_smithy_client.take)(data, {
4382
+ s3AccessPointArn: import_smithy_client.expectString,
4383
+ storeId: import_smithy_client.expectString,
4384
+ storeType: import_smithy_client.expectString
4385
+ });
4386
+ Object.assign(contents, doc);
4387
+ return contents;
4388
+ }, "de_PutS3AccessPolicyCommand");
4231
4389
  var de_StartAnnotationImportJobCommand = /* @__PURE__ */ __name(async (output, context) => {
4232
4390
  if (output.statusCode !== 200 && output.statusCode >= 300) {
4233
4391
  return de_CommandError(output, context);
@@ -4429,6 +4587,32 @@ var de_UpdateRunGroupCommand = /* @__PURE__ */ __name(async (output, context) =>
4429
4587
  await (0, import_smithy_client.collectBody)(output.body, context);
4430
4588
  return contents;
4431
4589
  }, "de_UpdateRunGroupCommand");
4590
+ var de_UpdateSequenceStoreCommand = /* @__PURE__ */ __name(async (output, context) => {
4591
+ if (output.statusCode !== 200 && output.statusCode >= 300) {
4592
+ return de_CommandError(output, context);
4593
+ }
4594
+ const contents = (0, import_smithy_client.map)({
4595
+ $metadata: deserializeMetadata(output)
4596
+ });
4597
+ const data = (0, import_smithy_client.expectNonNull)((0, import_smithy_client.expectObject)(await (0, import_core2.parseJsonBody)(output.body, context)), "body");
4598
+ const doc = (0, import_smithy_client.take)(data, {
4599
+ arn: import_smithy_client.expectString,
4600
+ creationTime: (_) => (0, import_smithy_client.expectNonNull)((0, import_smithy_client.parseRfc3339DateTimeWithOffset)(_)),
4601
+ description: import_smithy_client.expectString,
4602
+ eTagAlgorithmFamily: import_smithy_client.expectString,
4603
+ fallbackLocation: import_smithy_client.expectString,
4604
+ id: import_smithy_client.expectString,
4605
+ name: import_smithy_client.expectString,
4606
+ propagatedSetLevelTags: import_smithy_client._json,
4607
+ s3Access: import_smithy_client._json,
4608
+ sseConfig: import_smithy_client._json,
4609
+ status: import_smithy_client.expectString,
4610
+ statusMessage: import_smithy_client.expectString,
4611
+ updateTime: (_) => (0, import_smithy_client.expectNonNull)((0, import_smithy_client.parseRfc3339DateTimeWithOffset)(_))
4612
+ });
4613
+ Object.assign(contents, doc);
4614
+ return contents;
4615
+ }, "de_UpdateSequenceStoreCommand");
4432
4616
  var de_UpdateVariantStoreCommand = /* @__PURE__ */ __name(async (output, context) => {
4433
4617
  if (output.statusCode !== 200 && output.statusCode >= 300) {
4434
4618
  return de_CommandError(output, context);
@@ -4719,7 +4903,10 @@ var se_SequenceStoreFilter = /* @__PURE__ */ __name((input, context) => {
4719
4903
  return (0, import_smithy_client.take)(input, {
4720
4904
  createdAfter: import_smithy_client.serializeDateTime,
4721
4905
  createdBefore: import_smithy_client.serializeDateTime,
4722
- name: []
4906
+ name: [],
4907
+ status: [],
4908
+ updatedAfter: import_smithy_client.serializeDateTime,
4909
+ updatedBefore: import_smithy_client.serializeDateTime
4723
4910
  });
4724
4911
  }, "se_SequenceStoreFilter");
4725
4912
  var de_ActivateReadSetJobItem = /* @__PURE__ */ __name((output, context) => {
@@ -5013,7 +5200,10 @@ var de_SequenceStoreDetail = /* @__PURE__ */ __name((output, context) => {
5013
5200
  fallbackLocation: import_smithy_client.expectString,
5014
5201
  id: import_smithy_client.expectString,
5015
5202
  name: import_smithy_client.expectString,
5016
- sseConfig: import_smithy_client._json
5203
+ sseConfig: import_smithy_client._json,
5204
+ status: import_smithy_client.expectString,
5205
+ statusMessage: import_smithy_client.expectString,
5206
+ updateTime: (_) => (0, import_smithy_client.expectNonNull)((0, import_smithy_client.parseRfc3339DateTimeWithOffset)(_))
5017
5207
  });
5018
5208
  }, "de_SequenceStoreDetail");
5019
5209
  var de_SequenceStoreDetailList = /* @__PURE__ */ __name((output, context) => {
@@ -5477,6 +5667,20 @@ var _DeleteRunGroupCommand = class _DeleteRunGroupCommand extends import_smithy_
5477
5667
  __name(_DeleteRunGroupCommand, "DeleteRunGroupCommand");
5478
5668
  var DeleteRunGroupCommand = _DeleteRunGroupCommand;
5479
5669
 
5670
+ // src/commands/DeleteS3AccessPolicyCommand.ts
5671
+
5672
+
5673
+
5674
+ var _DeleteS3AccessPolicyCommand = class _DeleteS3AccessPolicyCommand extends import_smithy_client.Command.classBuilder().ep(commonParams).m(function(Command, cs, config, o) {
5675
+ return [
5676
+ (0, import_middleware_serde.getSerdePlugin)(config, this.serialize, this.deserialize),
5677
+ (0, import_middleware_endpoint.getEndpointPlugin)(config, Command.getEndpointParameterInstructions())
5678
+ ];
5679
+ }).s("Omics", "DeleteS3AccessPolicy", {}).n("OmicsClient", "DeleteS3AccessPolicyCommand").f(void 0, void 0).ser(se_DeleteS3AccessPolicyCommand).de(de_DeleteS3AccessPolicyCommand).build() {
5680
+ };
5681
+ __name(_DeleteS3AccessPolicyCommand, "DeleteS3AccessPolicyCommand");
5682
+ var DeleteS3AccessPolicyCommand = _DeleteS3AccessPolicyCommand;
5683
+
5480
5684
  // src/commands/DeleteSequenceStoreCommand.ts
5481
5685
 
5482
5686
 
@@ -5757,6 +5961,20 @@ var _GetRunTaskCommand = class _GetRunTaskCommand extends import_smithy_client.C
5757
5961
  __name(_GetRunTaskCommand, "GetRunTaskCommand");
5758
5962
  var GetRunTaskCommand = _GetRunTaskCommand;
5759
5963
 
5964
+ // src/commands/GetS3AccessPolicyCommand.ts
5965
+
5966
+
5967
+
5968
+ var _GetS3AccessPolicyCommand = class _GetS3AccessPolicyCommand extends import_smithy_client.Command.classBuilder().ep(commonParams).m(function(Command, cs, config, o) {
5969
+ return [
5970
+ (0, import_middleware_serde.getSerdePlugin)(config, this.serialize, this.deserialize),
5971
+ (0, import_middleware_endpoint.getEndpointPlugin)(config, Command.getEndpointParameterInstructions())
5972
+ ];
5973
+ }).s("Omics", "GetS3AccessPolicy", {}).n("OmicsClient", "GetS3AccessPolicyCommand").f(void 0, void 0).ser(se_GetS3AccessPolicyCommand).de(de_GetS3AccessPolicyCommand).build() {
5974
+ };
5975
+ __name(_GetS3AccessPolicyCommand, "GetS3AccessPolicyCommand");
5976
+ var GetS3AccessPolicyCommand = _GetS3AccessPolicyCommand;
5977
+
5760
5978
  // src/commands/GetSequenceStoreCommand.ts
5761
5979
 
5762
5980
 
@@ -6135,6 +6353,20 @@ var _ListWorkflowsCommand = class _ListWorkflowsCommand extends import_smithy_cl
6135
6353
  __name(_ListWorkflowsCommand, "ListWorkflowsCommand");
6136
6354
  var ListWorkflowsCommand = _ListWorkflowsCommand;
6137
6355
 
6356
+ // src/commands/PutS3AccessPolicyCommand.ts
6357
+
6358
+
6359
+
6360
+ var _PutS3AccessPolicyCommand = class _PutS3AccessPolicyCommand extends import_smithy_client.Command.classBuilder().ep(commonParams).m(function(Command, cs, config, o) {
6361
+ return [
6362
+ (0, import_middleware_serde.getSerdePlugin)(config, this.serialize, this.deserialize),
6363
+ (0, import_middleware_endpoint.getEndpointPlugin)(config, Command.getEndpointParameterInstructions())
6364
+ ];
6365
+ }).s("Omics", "PutS3AccessPolicy", {}).n("OmicsClient", "PutS3AccessPolicyCommand").f(void 0, void 0).ser(se_PutS3AccessPolicyCommand).de(de_PutS3AccessPolicyCommand).build() {
6366
+ };
6367
+ __name(_PutS3AccessPolicyCommand, "PutS3AccessPolicyCommand");
6368
+ var PutS3AccessPolicyCommand = _PutS3AccessPolicyCommand;
6369
+
6138
6370
  // src/commands/StartAnnotationImportJobCommand.ts
6139
6371
 
6140
6372
 
@@ -6317,6 +6549,20 @@ var _UpdateRunGroupCommand = class _UpdateRunGroupCommand extends import_smithy_
6317
6549
  __name(_UpdateRunGroupCommand, "UpdateRunGroupCommand");
6318
6550
  var UpdateRunGroupCommand = _UpdateRunGroupCommand;
6319
6551
 
6552
+ // src/commands/UpdateSequenceStoreCommand.ts
6553
+
6554
+
6555
+
6556
+ var _UpdateSequenceStoreCommand = class _UpdateSequenceStoreCommand extends import_smithy_client.Command.classBuilder().ep(commonParams).m(function(Command, cs, config, o) {
6557
+ return [
6558
+ (0, import_middleware_serde.getSerdePlugin)(config, this.serialize, this.deserialize),
6559
+ (0, import_middleware_endpoint.getEndpointPlugin)(config, Command.getEndpointParameterInstructions())
6560
+ ];
6561
+ }).s("Omics", "UpdateSequenceStore", {}).n("OmicsClient", "UpdateSequenceStoreCommand").f(void 0, void 0).ser(se_UpdateSequenceStoreCommand).de(de_UpdateSequenceStoreCommand).build() {
6562
+ };
6563
+ __name(_UpdateSequenceStoreCommand, "UpdateSequenceStoreCommand");
6564
+ var UpdateSequenceStoreCommand = _UpdateSequenceStoreCommand;
6565
+
6320
6566
  // src/commands/UpdateVariantStoreCommand.ts
6321
6567
 
6322
6568
 
@@ -6385,6 +6631,7 @@ var commands = {
6385
6631
  DeleteRunCommand,
6386
6632
  DeleteRunCacheCommand,
6387
6633
  DeleteRunGroupCommand,
6634
+ DeleteS3AccessPolicyCommand,
6388
6635
  DeleteSequenceStoreCommand,
6389
6636
  DeleteShareCommand,
6390
6637
  DeleteVariantStoreCommand,
@@ -6405,6 +6652,7 @@ var commands = {
6405
6652
  GetRunCacheCommand,
6406
6653
  GetRunGroupCommand,
6407
6654
  GetRunTaskCommand,
6655
+ GetS3AccessPolicyCommand,
6408
6656
  GetSequenceStoreCommand,
6409
6657
  GetShareCommand,
6410
6658
  GetVariantImportJobCommand,
@@ -6432,6 +6680,7 @@ var commands = {
6432
6680
  ListVariantImportJobsCommand,
6433
6681
  ListVariantStoresCommand,
6434
6682
  ListWorkflowsCommand,
6683
+ PutS3AccessPolicyCommand,
6435
6684
  StartAnnotationImportJobCommand,
6436
6685
  StartReadSetActivationJobCommand,
6437
6686
  StartReadSetExportJobCommand,
@@ -6445,6 +6694,7 @@ var commands = {
6445
6694
  UpdateAnnotationStoreVersionCommand,
6446
6695
  UpdateRunCacheCommand,
6447
6696
  UpdateRunGroupCommand,
6697
+ UpdateSequenceStoreCommand,
6448
6698
  UpdateVariantStoreCommand,
6449
6699
  UpdateWorkflowCommand,
6450
6700
  UploadReadSetPartCommand
@@ -7691,6 +7941,7 @@ var waitUntilWorkflowActive = /* @__PURE__ */ __name(async (params, input) => {
7691
7941
  DeleteRunCacheCommand,
7692
7942
  DeleteRunCommand,
7693
7943
  DeleteRunGroupCommand,
7944
+ DeleteS3AccessPolicyCommand,
7694
7945
  DeleteSequenceStoreCommand,
7695
7946
  DeleteShareCommand,
7696
7947
  DeleteVariantStoreCommand,
@@ -7711,6 +7962,7 @@ var waitUntilWorkflowActive = /* @__PURE__ */ __name(async (params, input) => {
7711
7962
  GetRunCommand,
7712
7963
  GetRunGroupCommand,
7713
7964
  GetRunTaskCommand,
7965
+ GetS3AccessPolicyCommand,
7714
7966
  GetSequenceStoreCommand,
7715
7967
  GetShareCommand,
7716
7968
  GetVariantImportJobCommand,
@@ -7738,6 +7990,7 @@ var waitUntilWorkflowActive = /* @__PURE__ */ __name(async (params, input) => {
7738
7990
  ListVariantImportJobsCommand,
7739
7991
  ListVariantStoresCommand,
7740
7992
  ListWorkflowsCommand,
7993
+ PutS3AccessPolicyCommand,
7741
7994
  StartAnnotationImportJobCommand,
7742
7995
  StartReadSetActivationJobCommand,
7743
7996
  StartReadSetExportJobCommand,
@@ -7751,6 +8004,7 @@ var waitUntilWorkflowActive = /* @__PURE__ */ __name(async (params, input) => {
7751
8004
  UpdateAnnotationStoreVersionCommand,
7752
8005
  UpdateRunCacheCommand,
7753
8006
  UpdateRunGroupCommand,
8007
+ UpdateSequenceStoreCommand,
7754
8008
  UpdateVariantStoreCommand,
7755
8009
  UpdateWorkflowCommand,
7756
8010
  UploadReadSetPartCommand,
@@ -7839,6 +8093,7 @@ var waitUntilWorkflowActive = /* @__PURE__ */ __name(async (params, input) => {
7839
8093
  FileType,
7840
8094
  RunCacheStatus,
7841
8095
  ETagAlgorithmFamily,
8096
+ SequenceStoreStatus,
7842
8097
  WorkflowEngine,
7843
8098
  WorkflowStatus,
7844
8099
  CreationType,
@@ -7863,6 +8118,7 @@ var waitUntilWorkflowActive = /* @__PURE__ */ __name(async (params, input) => {
7863
8118
  StorageType,
7864
8119
  WorkflowType,
7865
8120
  TaskStatus,
8121
+ StoreType,
7866
8122
  WorkflowExport,
7867
8123
  ResourceOwner,
7868
8124
  GetReadSetResponseFilterSensitiveLog,
package/dist-es/Omics.js CHANGED
@@ -23,6 +23,7 @@ import { DeleteReferenceStoreCommand, } from "./commands/DeleteReferenceStoreCom
23
23
  import { DeleteRunCacheCommand, } from "./commands/DeleteRunCacheCommand";
24
24
  import { DeleteRunCommand } from "./commands/DeleteRunCommand";
25
25
  import { DeleteRunGroupCommand, } from "./commands/DeleteRunGroupCommand";
26
+ import { DeleteS3AccessPolicyCommand, } from "./commands/DeleteS3AccessPolicyCommand";
26
27
  import { DeleteSequenceStoreCommand, } from "./commands/DeleteSequenceStoreCommand";
27
28
  import { DeleteShareCommand } from "./commands/DeleteShareCommand";
28
29
  import { DeleteVariantStoreCommand, } from "./commands/DeleteVariantStoreCommand";
@@ -43,6 +44,7 @@ import { GetRunCacheCommand } from "./commands/GetRunCacheCommand";
43
44
  import { GetRunCommand } from "./commands/GetRunCommand";
44
45
  import { GetRunGroupCommand } from "./commands/GetRunGroupCommand";
45
46
  import { GetRunTaskCommand } from "./commands/GetRunTaskCommand";
47
+ import { GetS3AccessPolicyCommand, } from "./commands/GetS3AccessPolicyCommand";
46
48
  import { GetSequenceStoreCommand, } from "./commands/GetSequenceStoreCommand";
47
49
  import { GetShareCommand } from "./commands/GetShareCommand";
48
50
  import { GetVariantImportJobCommand, } from "./commands/GetVariantImportJobCommand";
@@ -70,6 +72,7 @@ import { ListTagsForResourceCommand, } from "./commands/ListTagsForResourceComma
70
72
  import { ListVariantImportJobsCommand, } from "./commands/ListVariantImportJobsCommand";
71
73
  import { ListVariantStoresCommand, } from "./commands/ListVariantStoresCommand";
72
74
  import { ListWorkflowsCommand, } from "./commands/ListWorkflowsCommand";
75
+ import { PutS3AccessPolicyCommand, } from "./commands/PutS3AccessPolicyCommand";
73
76
  import { StartAnnotationImportJobCommand, } from "./commands/StartAnnotationImportJobCommand";
74
77
  import { StartReadSetActivationJobCommand, } from "./commands/StartReadSetActivationJobCommand";
75
78
  import { StartReadSetExportJobCommand, } from "./commands/StartReadSetExportJobCommand";
@@ -83,6 +86,7 @@ import { UpdateAnnotationStoreCommand, } from "./commands/UpdateAnnotationStoreC
83
86
  import { UpdateAnnotationStoreVersionCommand, } from "./commands/UpdateAnnotationStoreVersionCommand";
84
87
  import { UpdateRunCacheCommand, } from "./commands/UpdateRunCacheCommand";
85
88
  import { UpdateRunGroupCommand, } from "./commands/UpdateRunGroupCommand";
89
+ import { UpdateSequenceStoreCommand, } from "./commands/UpdateSequenceStoreCommand";
86
90
  import { UpdateVariantStoreCommand, } from "./commands/UpdateVariantStoreCommand";
87
91
  import { UpdateWorkflowCommand, } from "./commands/UpdateWorkflowCommand";
88
92
  import { UploadReadSetPartCommand, } from "./commands/UploadReadSetPartCommand";
@@ -112,6 +116,7 @@ const commands = {
112
116
  DeleteRunCommand,
113
117
  DeleteRunCacheCommand,
114
118
  DeleteRunGroupCommand,
119
+ DeleteS3AccessPolicyCommand,
115
120
  DeleteSequenceStoreCommand,
116
121
  DeleteShareCommand,
117
122
  DeleteVariantStoreCommand,
@@ -132,6 +137,7 @@ const commands = {
132
137
  GetRunCacheCommand,
133
138
  GetRunGroupCommand,
134
139
  GetRunTaskCommand,
140
+ GetS3AccessPolicyCommand,
135
141
  GetSequenceStoreCommand,
136
142
  GetShareCommand,
137
143
  GetVariantImportJobCommand,
@@ -159,6 +165,7 @@ const commands = {
159
165
  ListVariantImportJobsCommand,
160
166
  ListVariantStoresCommand,
161
167
  ListWorkflowsCommand,
168
+ PutS3AccessPolicyCommand,
162
169
  StartAnnotationImportJobCommand,
163
170
  StartReadSetActivationJobCommand,
164
171
  StartReadSetExportJobCommand,
@@ -172,6 +179,7 @@ const commands = {
172
179
  UpdateAnnotationStoreVersionCommand,
173
180
  UpdateRunCacheCommand,
174
181
  UpdateRunGroupCommand,
182
+ UpdateSequenceStoreCommand,
175
183
  UpdateVariantStoreCommand,
176
184
  UpdateWorkflowCommand,
177
185
  UploadReadSetPartCommand,
@@ -0,0 +1,22 @@
1
+ import { getEndpointPlugin } from "@smithy/middleware-endpoint";
2
+ import { getSerdePlugin } from "@smithy/middleware-serde";
3
+ import { Command as $Command } from "@smithy/smithy-client";
4
+ import { commonParams } from "../endpoint/EndpointParameters";
5
+ import { de_DeleteS3AccessPolicyCommand, se_DeleteS3AccessPolicyCommand } from "../protocols/Aws_restJson1";
6
+ export { $Command };
7
+ export class DeleteS3AccessPolicyCommand extends $Command
8
+ .classBuilder()
9
+ .ep(commonParams)
10
+ .m(function (Command, cs, config, o) {
11
+ return [
12
+ getSerdePlugin(config, this.serialize, this.deserialize),
13
+ getEndpointPlugin(config, Command.getEndpointParameterInstructions()),
14
+ ];
15
+ })
16
+ .s("Omics", "DeleteS3AccessPolicy", {})
17
+ .n("OmicsClient", "DeleteS3AccessPolicyCommand")
18
+ .f(void 0, void 0)
19
+ .ser(se_DeleteS3AccessPolicyCommand)
20
+ .de(de_DeleteS3AccessPolicyCommand)
21
+ .build() {
22
+ }
@@ -0,0 +1,22 @@
1
+ import { getEndpointPlugin } from "@smithy/middleware-endpoint";
2
+ import { getSerdePlugin } from "@smithy/middleware-serde";
3
+ import { Command as $Command } from "@smithy/smithy-client";
4
+ import { commonParams } from "../endpoint/EndpointParameters";
5
+ import { de_GetS3AccessPolicyCommand, se_GetS3AccessPolicyCommand } from "../protocols/Aws_restJson1";
6
+ export { $Command };
7
+ export class GetS3AccessPolicyCommand extends $Command
8
+ .classBuilder()
9
+ .ep(commonParams)
10
+ .m(function (Command, cs, config, o) {
11
+ return [
12
+ getSerdePlugin(config, this.serialize, this.deserialize),
13
+ getEndpointPlugin(config, Command.getEndpointParameterInstructions()),
14
+ ];
15
+ })
16
+ .s("Omics", "GetS3AccessPolicy", {})
17
+ .n("OmicsClient", "GetS3AccessPolicyCommand")
18
+ .f(void 0, void 0)
19
+ .ser(se_GetS3AccessPolicyCommand)
20
+ .de(de_GetS3AccessPolicyCommand)
21
+ .build() {
22
+ }