@aws-sdk/client-omics 3.686.0 → 3.691.0

package/dist-types/ts3.4/models/models_0.d.ts

@@ -86,7 +86,7 @@ export declare const ShareStatus: {
 };
 export type ShareStatus = (typeof ShareStatus)[keyof typeof ShareStatus];
 export interface AcceptShareResponse {
-  status?: ShareStatus;
+  status?: ShareStatus | undefined;
 }
 export declare class ConflictException extends __BaseException {
   readonly name: "ConflictException";
@@ -105,16 +105,16 @@ export declare const ReadSetActivationJobStatus: {
 export type ReadSetActivationJobStatus =
   (typeof ReadSetActivationJobStatus)[keyof typeof ReadSetActivationJobStatus];
 export interface ActivateReadSetFilter {
-  status?: ReadSetActivationJobStatus;
-  createdAfter?: Date;
-  createdBefore?: Date;
+  status?: ReadSetActivationJobStatus | undefined;
+  createdAfter?: Date | undefined;
+  createdBefore?: Date | undefined;
 }
 export interface ActivateReadSetJobItem {
   id: string | undefined;
   sequenceStoreId: string | undefined;
   status: ReadSetActivationJobStatus | undefined;
   creationTime: Date | undefined;
-  completionTime?: Date;
+  completionTime?: Date | undefined;
 }
 export declare const ReadSetActivationJobItemStatus: {
   readonly FAILED: "FAILED";
@@ -127,7 +127,7 @@ export type ReadSetActivationJobItemStatus =
 export interface ActivateReadSetSourceItem {
   readSetId: string | undefined;
   status: ReadSetActivationJobItemStatus | undefined;
-  statusMessage?: string;
+  statusMessage?: string | undefined;
 }
 export declare const JobStatus: {
   readonly CANCELLED: "CANCELLED";
@@ -153,22 +153,22 @@ export interface GetAnnotationImportRequest {
   jobId: string | undefined;
 }
 export interface ReadOptions {
-  sep?: string;
-  encoding?: string;
-  quote?: string;
-  quoteAll?: boolean;
-  escape?: string;
-  escapeQuotes?: boolean;
-  comment?: string;
-  header?: boolean;
-  lineSep?: string;
+  sep?: string | undefined;
+  encoding?: string | undefined;
+  quote?: string | undefined;
+  quoteAll?: boolean | undefined;
+  escape?: string | undefined;
+  escapeQuotes?: boolean | undefined;
+  comment?: string | undefined;
+  header?: boolean | undefined;
+  lineSep?: string | undefined;
 }
 export interface TsvOptions {
-  readOptions?: ReadOptions;
+  readOptions?: ReadOptions | undefined;
 }
 export interface VcfOptions {
-  ignoreQualField?: boolean;
-  ignoreFilterField?: boolean;
+  ignoreQualField?: boolean | undefined;
+  ignoreFilterField?: boolean | undefined;
 }
 export type FormatOptions =
   | FormatOptions.TsvOptionsMember
@@ -210,17 +210,17 @@ export interface GetAnnotationImportResponse {
   items: AnnotationImportItemDetail[] | undefined;
   runLeftNormalization: boolean | undefined;
   formatOptions: FormatOptions | undefined;
-  annotationFields?: Record<string, string>;
+  annotationFields?: Record<string, string> | undefined;
 }
 export interface ListAnnotationImportJobsFilter {
-  status?: JobStatus;
-  storeName?: string;
+  status?: JobStatus | undefined;
+  storeName?: string | undefined;
 }
 export interface ListAnnotationImportJobsRequest {
-  maxResults?: number;
-  ids?: string[];
-  nextToken?: string;
-  filter?: ListAnnotationImportJobsFilter;
+  maxResults?: number | undefined;
+  ids?: string[] | undefined;
+  nextToken?: string | undefined;
+  filter?: ListAnnotationImportJobsFilter | undefined;
 }
 export interface AnnotationImportJobItem {
   id: string | undefined;
@@ -230,22 +230,22 @@ export interface AnnotationImportJobItem {
   status: JobStatus | undefined;
   creationTime: Date | undefined;
   updateTime: Date | undefined;
-  completionTime?: Date;
-  runLeftNormalization?: boolean;
-  annotationFields?: Record<string, string>;
+  completionTime?: Date | undefined;
+  runLeftNormalization?: boolean | undefined;
+  annotationFields?: Record<string, string> | undefined;
 }
 export interface ListAnnotationImportJobsResponse {
-  annotationImportJobs?: AnnotationImportJobItem[];
-  nextToken?: string;
+  annotationImportJobs?: AnnotationImportJobItem[] | undefined;
+  nextToken?: string | undefined;
 }
 export interface StartAnnotationImportRequest {
   destinationName: string | undefined;
   roleArn: string | undefined;
   items: AnnotationImportItemSource[] | undefined;
-  versionName?: string;
-  formatOptions?: FormatOptions;
-  runLeftNormalization?: boolean;
-  annotationFields?: Record<string, string>;
+  versionName?: string | undefined;
+  formatOptions?: FormatOptions | undefined;
+  runLeftNormalization?: boolean | undefined;
+  annotationFields?: Record<string, string> | undefined;
 }
 export interface StartAnnotationImportResponse {
   jobId: string | undefined;
@@ -275,7 +275,7 @@ export type EncryptionType =
   (typeof EncryptionType)[keyof typeof EncryptionType];
 export interface SseConfig {
   type: EncryptionType | undefined;
-  keyArn?: string;
+  keyArn?: string | undefined;
 }
 export declare const StoreFormat: {
   readonly GFF: "GFF";
@@ -315,9 +315,9 @@ export declare const SchemaValueType: {
 export type SchemaValueType =
   (typeof SchemaValueType)[keyof typeof SchemaValueType];
 export interface TsvStoreOptions {
-  annotationType?: AnnotationType;
-  formatToHeader?: Partial<Record<FormatToHeaderKey, string>>;
-  schema?: Record<string, SchemaValueType>[];
+  annotationType?: AnnotationType | undefined;
+  formatToHeader?: Partial<Record<FormatToHeaderKey, string>> | undefined;
+  schema?: Record<string, SchemaValueType>[] | undefined;
 }
 export type StoreOptions =
   | StoreOptions.TsvStoreOptionsMember
@@ -338,14 +338,14 @@ export declare namespace StoreOptions {
   const visit: <T>(value: StoreOptions, visitor: Visitor<T>) => T;
 }
 export interface CreateAnnotationStoreRequest {
-  reference?: ReferenceItem;
-  name?: string;
-  description?: string;
-  tags?: Record<string, string>;
-  versionName?: string;
-  sseConfig?: SseConfig;
+  reference?: ReferenceItem | undefined;
+  name?: string | undefined;
+  description?: string | undefined;
+  tags?: Record<string, string> | undefined;
+  versionName?: string | undefined;
+  sseConfig?: SseConfig | undefined;
   storeFormat: StoreFormat | undefined;
-  storeOptions?: StoreOptions;
+  storeOptions?: StoreOptions | undefined;
 }
 export declare const StoreStatus: {
   readonly ACTIVE: "ACTIVE";
@@ -357,9 +357,9 @@ export declare const StoreStatus: {
 export type StoreStatus = (typeof StoreStatus)[keyof typeof StoreStatus];
 export interface CreateAnnotationStoreResponse {
   id: string | undefined;
-  reference?: ReferenceItem;
-  storeFormat?: StoreFormat;
-  storeOptions?: StoreOptions;
+  reference?: ReferenceItem | undefined;
+  storeFormat?: StoreFormat | undefined;
+  storeOptions?: StoreOptions | undefined;
   status: StoreStatus | undefined;
   name: string | undefined;
   versionName: string | undefined;
@@ -367,7 +367,7 @@ export interface CreateAnnotationStoreResponse {
 }
 export interface DeleteAnnotationStoreRequest {
   name: string | undefined;
-  force?: boolean;
+  force?: boolean | undefined;
 }
 export interface DeleteAnnotationStoreResponse {
   status: StoreStatus | undefined;
@@ -386,20 +386,20 @@ export interface GetAnnotationStoreResponse {
   creationTime: Date | undefined;
   updateTime: Date | undefined;
   tags: Record<string, string> | undefined;
-  storeOptions?: StoreOptions;
-  storeFormat?: StoreFormat;
+  storeOptions?: StoreOptions | undefined;
+  storeFormat?: StoreFormat | undefined;
   statusMessage: string | undefined;
   storeSizeBytes: number | undefined;
   numVersions: number | undefined;
 }
 export interface ListAnnotationStoresFilter {
-  status?: StoreStatus;
+  status?: StoreStatus | undefined;
 }
 export interface ListAnnotationStoresRequest {
-  ids?: string[];
-  maxResults?: number;
-  nextToken?: string;
-  filter?: ListAnnotationStoresFilter;
+  ids?: string[] | undefined;
+  maxResults?: number | undefined;
+  nextToken?: string | undefined;
+  filter?: ListAnnotationStoresFilter | undefined;
 }
 export interface AnnotationStoreItem {
   id: string | undefined;
@@ -416,12 +416,12 @@ export interface AnnotationStoreItem {
   storeSizeBytes: number | undefined;
 }
 export interface ListAnnotationStoresResponse {
-  annotationStores?: AnnotationStoreItem[];
-  nextToken?: string;
+  annotationStores?: AnnotationStoreItem[] | undefined;
+  nextToken?: string | undefined;
 }
 export interface UpdateAnnotationStoreRequest {
   name: string | undefined;
-  description?: string;
+  description?: string | undefined;
 }
 export interface UpdateAnnotationStoreResponse {
   id: string | undefined;
@@ -431,13 +431,13 @@ export interface UpdateAnnotationStoreResponse {
   description: string | undefined;
   creationTime: Date | undefined;
   updateTime: Date | undefined;
-  storeOptions?: StoreOptions;
-  storeFormat?: StoreFormat;
+  storeOptions?: StoreOptions | undefined;
+  storeFormat?: StoreFormat | undefined;
 }
 export interface TsvVersionOptions {
-  annotationType?: AnnotationType;
-  formatToHeader?: Partial<Record<FormatToHeaderKey, string>>;
-  schema?: Record<string, SchemaValueType>[];
+  annotationType?: AnnotationType | undefined;
+  formatToHeader?: Partial<Record<FormatToHeaderKey, string>> | undefined;
+  schema?: Record<string, SchemaValueType>[] | undefined;
 }
 export type VersionOptions =
   | VersionOptions.TsvVersionOptionsMember
@@ -460,9 +460,9 @@ export declare namespace VersionOptions {
 export interface CreateAnnotationStoreVersionRequest {
   name: string | undefined;
   versionName: string | undefined;
-  description?: string;
-  versionOptions?: VersionOptions;
-  tags?: Record<string, string>;
+  description?: string | undefined;
+  versionOptions?: VersionOptions | undefined;
+  tags?: Record<string, string> | undefined;
 }
 export declare const VersionStatus: {
   readonly ACTIVE: "ACTIVE";
@@ -476,7 +476,7 @@ export interface CreateAnnotationStoreVersionResponse {
   id: string | undefined;
   versionName: string | undefined;
   storeId: string | undefined;
-  versionOptions?: VersionOptions;
+  versionOptions?: VersionOptions | undefined;
   name: string | undefined;
   status: VersionStatus | undefined;
   creationTime: Date | undefined;
@@ -484,14 +484,14 @@ export interface CreateAnnotationStoreVersionResponse {
 export interface DeleteAnnotationStoreVersionsRequest {
   name: string | undefined;
   versions: string[] | undefined;
-  force?: boolean;
+  force?: boolean | undefined;
 }
 export interface VersionDeleteError {
   versionName: string | undefined;
   message: string | undefined;
 }
 export interface DeleteAnnotationStoreVersionsResponse {
-  errors?: VersionDeleteError[];
+  errors?: VersionDeleteError[] | undefined;
 }
 export interface GetAnnotationStoreVersionRequest {
   name: string | undefined;
@@ -508,18 +508,18 @@ export interface GetAnnotationStoreVersionResponse {
   creationTime: Date | undefined;
   updateTime: Date | undefined;
   tags: Record<string, string> | undefined;
-  versionOptions?: VersionOptions;
+  versionOptions?: VersionOptions | undefined;
   statusMessage: string | undefined;
   versionSizeBytes: number | undefined;
 }
 export interface ListAnnotationStoreVersionsFilter {
-  status?: VersionStatus;
+  status?: VersionStatus | undefined;
 }
 export interface ListAnnotationStoreVersionsRequest {
   name: string | undefined;
-  maxResults?: number;
-  nextToken?: string;
-  filter?: ListAnnotationStoreVersionsFilter;
+  maxResults?: number | undefined;
+  nextToken?: string | undefined;
+  filter?: ListAnnotationStoreVersionsFilter | undefined;
 }
 export interface AnnotationStoreVersionItem {
   storeId: string | undefined;
@@ -535,13 +535,13 @@ export interface AnnotationStoreVersionItem {
   versionSizeBytes: number | undefined;
 }
 export interface ListAnnotationStoreVersionsResponse {
-  annotationStoreVersions?: AnnotationStoreVersionItem[];
-  nextToken?: string;
+  annotationStoreVersions?: AnnotationStoreVersionItem[] | undefined;
+  nextToken?: string | undefined;
 }
 export interface UpdateAnnotationStoreVersionRequest {
   name: string | undefined;
   versionName: string | undefined;
-  description?: string;
+  description?: string | undefined;
 }
 export interface UpdateAnnotationStoreVersionResponse {
   storeId: string | undefined;
@@ -563,7 +563,7 @@ export interface ReadSetBatchError {
   message: string | undefined;
 }
 export interface BatchDeleteReadSetResponse {
-  errors?: ReadSetBatchError[];
+  errors?: ReadSetBatchError[] | undefined;
 }
 export interface CancelRunRequest {
   id: string | undefined;
@@ -600,15 +600,15 @@ export declare const FileType: {
 export type FileType = (typeof FileType)[keyof typeof FileType];
 export interface CreateMultipartReadSetUploadRequest {
   sequenceStoreId: string | undefined;
-  clientToken?: string;
+  clientToken?: string | undefined;
   sourceFileType: FileType | undefined;
   subjectId: string | undefined;
   sampleId: string | undefined;
-  generatedFrom?: string;
-  referenceArn?: string;
+  generatedFrom?: string | undefined;
+  referenceArn?: string | undefined;
   name: string | undefined;
-  description?: string;
-  tags?: Record<string, string>;
+  description?: string | undefined;
+  tags?: Record<string, string> | undefined;
 }
 export interface CreateMultipartReadSetUploadResponse {
   sequenceStoreId: string | undefined;
@@ -616,41 +616,41 @@ export interface CreateMultipartReadSetUploadResponse {
   sourceFileType: FileType | undefined;
   subjectId: string | undefined;
   sampleId: string | undefined;
-  generatedFrom?: string;
+  generatedFrom?: string | undefined;
   referenceArn: string | undefined;
-  name?: string;
-  description?: string;
-  tags?: Record<string, string>;
+  name?: string | undefined;
+  description?: string | undefined;
+  tags?: Record<string, string> | undefined;
   creationTime: Date | undefined;
 }
 export interface CreateReferenceStoreRequest {
   name: string | undefined;
-  description?: string;
-  sseConfig?: SseConfig;
-  tags?: Record<string, string>;
-  clientToken?: string;
+  description?: string | undefined;
+  sseConfig?: SseConfig | undefined;
+  tags?: Record<string, string> | undefined;
+  clientToken?: string | undefined;
 }
 export interface CreateReferenceStoreResponse {
   id: string | undefined;
   arn: string | undefined;
-  name?: string;
-  description?: string;
-  sseConfig?: SseConfig;
+  name?: string | undefined;
+  description?: string | undefined;
+  sseConfig?: SseConfig | undefined;
   creationTime: Date | undefined;
 }
 export interface CreateRunGroupRequest {
-  name?: string;
-  maxCpus?: number;
-  maxRuns?: number;
-  maxDuration?: number;
-  tags?: Record<string, string>;
-  requestId?: string;
-  maxGpus?: number;
+  name?: string | undefined;
+  maxCpus?: number | undefined;
+  maxRuns?: number | undefined;
+  maxDuration?: number | undefined;
+  tags?: Record<string, string> | undefined;
+  requestId?: string | undefined;
+  maxGpus?: number | undefined;
 }
 export interface CreateRunGroupResponse {
-  arn?: string;
-  id?: string;
-  tags?: Record<string, string>;
+  arn?: string | undefined;
+  id?: string | undefined;
+  tags?: Record<string, string> | undefined;
 }
 export declare const ETagAlgorithmFamily: {
   readonly MD5UP: "MD5up";
@@ -661,43 +661,43 @@ export type ETagAlgorithmFamily =
   (typeof ETagAlgorithmFamily)[keyof typeof ETagAlgorithmFamily];
 export interface CreateSequenceStoreRequest {
   name: string | undefined;
-  description?: string;
-  sseConfig?: SseConfig;
-  tags?: Record<string, string>;
-  clientToken?: string;
-  fallbackLocation?: string;
-  eTagAlgorithmFamily?: ETagAlgorithmFamily;
+  description?: string | undefined;
+  sseConfig?: SseConfig | undefined;
+  tags?: Record<string, string> | undefined;
+  clientToken?: string | undefined;
+  fallbackLocation?: string | undefined;
+  eTagAlgorithmFamily?: ETagAlgorithmFamily | undefined;
 }
 export interface CreateSequenceStoreResponse {
   id: string | undefined;
   arn: string | undefined;
-  name?: string;
-  description?: string;
-  sseConfig?: SseConfig;
+  name?: string | undefined;
+  description?: string | undefined;
+  sseConfig?: SseConfig | undefined;
   creationTime: Date | undefined;
-  fallbackLocation?: string;
-  eTagAlgorithmFamily?: ETagAlgorithmFamily;
+  fallbackLocation?: string | undefined;
+  eTagAlgorithmFamily?: ETagAlgorithmFamily | undefined;
 }
 export interface CreateShareRequest {
   resourceArn: string | undefined;
   principalSubscriber: string | undefined;
-  shareName?: string;
+  shareName?: string | undefined;
 }
 export interface CreateShareResponse {
-  shareId?: string;
-  status?: ShareStatus;
-  shareName?: string;
+  shareId?: string | undefined;
+  status?: ShareStatus | undefined;
+  shareName?: string | undefined;
 }
 export interface CreateVariantStoreRequest {
   reference: ReferenceItem | undefined;
-  name?: string;
-  description?: string;
-  tags?: Record<string, string>;
-  sseConfig?: SseConfig;
+  name?: string | undefined;
+  description?: string | undefined;
+  tags?: Record<string, string> | undefined;
+  sseConfig?: SseConfig | undefined;
 }
 export interface CreateVariantStoreResponse {
   id: string | undefined;
-  reference?: ReferenceItem;
+  reference?: ReferenceItem | undefined;
   status: StoreStatus | undefined;
   name: string | undefined;
   creationTime: Date | undefined;
@@ -710,21 +710,21 @@ export declare const WorkflowEngine: {
 export type WorkflowEngine =
   (typeof WorkflowEngine)[keyof typeof WorkflowEngine];
 export interface WorkflowParameter {
-  description?: string;
-  optional?: boolean;
+  description?: string | undefined;
+  optional?: boolean | undefined;
 }
 export interface CreateWorkflowRequest {
-  name?: string;
-  description?: string;
-  engine?: WorkflowEngine;
-  definitionZip?: Uint8Array;
-  definitionUri?: string;
-  main?: string;
-  parameterTemplate?: Record<string, WorkflowParameter>;
-  storageCapacity?: number;
-  tags?: Record<string, string>;
-  requestId?: string;
-  accelerators?: Accelerators;
+  name?: string | undefined;
+  description?: string | undefined;
+  engine?: WorkflowEngine | undefined;
+  definitionZip?: Uint8Array | undefined;
+  definitionUri?: string | undefined;
+  main?: string | undefined;
+  parameterTemplate?: Record<string, WorkflowParameter> | undefined;
+  storageCapacity?: number | undefined;
+  tags?: Record<string, string> | undefined;
+  requestId?: string | undefined;
+  accelerators?: Accelerators | undefined;
 }
 export declare const WorkflowStatus: {
   readonly ACTIVE: "ACTIVE";
@@ -737,10 +737,10 @@ export declare const WorkflowStatus: {
 export type WorkflowStatus =
   (typeof WorkflowStatus)[keyof typeof WorkflowStatus];
 export interface CreateWorkflowResponse {
-  arn?: string;
-  id?: string;
-  status?: WorkflowStatus;
-  tags?: Record<string, string>;
+  arn?: string | undefined;
+  id?: string | undefined;
+  status?: WorkflowStatus | undefined;
+  tags?: Record<string, string> | undefined;
 }
 export declare const CreationType: {
   readonly IMPORT: "IMPORT";
@@ -770,11 +770,11 @@ export interface DeleteShareRequest {
   shareId: string | undefined;
 }
 export interface DeleteShareResponse {
-  status?: ShareStatus;
+  status?: ShareStatus | undefined;
 }
 export interface DeleteVariantStoreRequest {
   name: string | undefined;
-  force?: boolean;
+  force?: boolean | undefined;
 }
 export interface DeleteVariantStoreResponse {
   status: StoreStatus | undefined;
@@ -795,9 +795,9 @@ export declare const ETagAlgorithm: {
 };
 export type ETagAlgorithm = (typeof ETagAlgorithm)[keyof typeof ETagAlgorithm];
 export interface ETag {
-  algorithm?: ETagAlgorithm;
-  source1?: string;
-  source2?: string;
+  algorithm?: ETagAlgorithm | undefined;
+  source1?: string | undefined;
+  source2?: string | undefined;
 }
 export interface ExportReadSet {
   readSetId: string | undefined;
@@ -813,7 +813,7 @@ export type ReadSetExportJobItemStatus =
 export interface ExportReadSetDetail {
   id: string | undefined;
   status: ReadSetExportJobItemStatus | undefined;
-  statusMessage?: string;
+  statusMessage?: string | undefined;
 }
 export declare const ReadSetExportJobStatus: {
   readonly CANCELLED: "CANCELLED";
@@ -827,9 +827,9 @@ export declare const ReadSetExportJobStatus: {
 export type ReadSetExportJobStatus =
   (typeof ReadSetExportJobStatus)[keyof typeof ReadSetExportJobStatus];
 export interface ExportReadSetFilter {
-  status?: ReadSetExportJobStatus;
-  createdAfter?: Date;
-  createdBefore?: Date;
+  status?: ReadSetExportJobStatus | undefined;
+  createdAfter?: Date | undefined;
+  createdBefore?: Date | undefined;
 }
 export interface ExportReadSetJobDetail {
   id: string | undefined;
@@ -837,16 +837,16 @@ export interface ExportReadSetJobDetail {
   destination: string | undefined;
   status: ReadSetExportJobStatus | undefined;
   creationTime: Date | undefined;
-  completionTime?: Date;
+  completionTime?: Date | undefined;
 }
 export interface ReadSetS3Access {
-  s3Uri?: string;
+  s3Uri?: string | undefined;
 }
 export interface FileInformation {
-  totalParts?: number;
-  partSize?: number;
-  contentLength?: number;
-  s3Access?: ReadSetS3Access;
+  totalParts?: number | undefined;
+  partSize?: number | undefined;
+  contentLength?: number | undefined;
+  s3Access?: ReadSetS3Access | undefined;
 }
 export declare const ShareResourceType: {
   readonly ANNOTATION_STORE: "ANNOTATION_STORE";
@@ -856,9 +856,9 @@ export declare const ShareResourceType: {
 export type ShareResourceType =
   (typeof ShareResourceType)[keyof typeof ShareResourceType];
 export interface Filter {
-  resourceArns?: string[];
-  status?: ShareStatus[];
-  type?: ShareResourceType[];
+  resourceArns?: string[] | undefined;
+  status?: ShareStatus[] | undefined;
+  type?: ShareResourceType[] | undefined;
 }
 export declare const ReadSetFile: {
   readonly INDEX: "INDEX";
@@ -869,11 +869,11 @@ export type ReadSetFile = (typeof ReadSetFile)[keyof typeof ReadSetFile];
 export interface GetReadSetRequest {
   id: string | undefined;
   sequenceStoreId: string | undefined;
-  file?: ReadSetFile;
+  file?: ReadSetFile | undefined;
   partNumber: number | undefined;
 }
 export interface GetReadSetResponse {
-  payload?: StreamingBlobTypes;
+  payload?: StreamingBlobTypes | undefined;
 }
 export declare class RangeNotSatisfiableException extends __BaseException {
   readonly name: "RangeNotSatisfiableException";
@@ -891,10 +891,10 @@ export interface GetReadSetActivationJobResponse {
   id: string | undefined;
   sequenceStoreId: string | undefined;
   status: ReadSetActivationJobStatus | undefined;
-  statusMessage?: string;
+  statusMessage?: string | undefined;
   creationTime: Date | undefined;
-  completionTime?: Date;
-  sources?: ActivateReadSetSourceItem[];
+  completionTime?: Date | undefined;
+  sources?: ActivateReadSetSourceItem[] | undefined;
 }
 export interface GetReadSetExportJobRequest {
   sequenceStoreId: string | undefined;
@@ -905,10 +905,10 @@ export interface GetReadSetExportJobResponse {
   sequenceStoreId: string | undefined;
   destination: string | undefined;
   status: ReadSetExportJobStatus | undefined;
-  statusMessage?: string;
+  statusMessage?: string | undefined;
   creationTime: Date | undefined;
-  completionTime?: Date;
-  readSets?: ExportReadSetDetail[];
+  completionTime?: Date | undefined;
+  readSets?: ExportReadSetDetail[] | undefined;
 }
 export interface GetReadSetImportJobRequest {
   id: string | undefined;
@@ -916,7 +916,7 @@ export interface GetReadSetImportJobRequest {
 }
 export interface SourceFiles {
   source1: string | undefined;
-  source2?: string;
+  source2?: string | undefined;
 }
 export declare const ReadSetImportJobItemStatus: {
   readonly FAILED: "FAILED";
@@ -930,15 +930,15 @@ export interface ImportReadSetSourceItem {
   sourceFiles: SourceFiles | undefined;
   sourceFileType: FileType | undefined;
   status: ReadSetImportJobItemStatus | undefined;
-  statusMessage?: string;
+  statusMessage?: string | undefined;
   subjectId: string | undefined;
   sampleId: string | undefined;
-  generatedFrom?: string;
-  referenceArn?: string;
-  name?: string;
-  description?: string;
-  tags?: Record<string, string>;
-  readSetId?: string;
+  generatedFrom?: string | undefined;
+  referenceArn?: string | undefined;
+  name?: string | undefined;
+  description?: string | undefined;
+  tags?: Record<string, string> | undefined;
+  readSetId?: string | undefined;
 }
 export declare const ReadSetImportJobStatus: {
   readonly CANCELLED: "CANCELLED";
@@ -956,9 +956,9 @@ export interface GetReadSetImportJobResponse {
   sequenceStoreId: string | undefined;
   roleArn: string | undefined;
   status: ReadSetImportJobStatus | undefined;
-  statusMessage?: string;
+  statusMessage?: string | undefined;
   creationTime: Date | undefined;
-  completionTime?: Date;
+  completionTime?: Date | undefined;
   sources: ImportReadSetSourceItem[] | undefined;
 }
 export interface GetReadSetMetadataRequest {
@@ -966,15 +966,15 @@ export interface GetReadSetMetadataRequest {
   sequenceStoreId: string | undefined;
 }
 export interface ReadSetFiles {
-  source1?: FileInformation;
-  source2?: FileInformation;
-  index?: FileInformation;
+  source1?: FileInformation | undefined;
+  source2?: FileInformation | undefined;
+  index?: FileInformation | undefined;
 }
 export interface SequenceInformation {
-  totalReadCount?: number;
-  totalBaseCount?: number;
-  generatedFrom?: string;
-  alignment?: string;
+  totalReadCount?: number | undefined;
+  totalBaseCount?: number | undefined;
+  generatedFrom?: string | undefined;
+  alignment?: string | undefined;
 }
 export declare const ReadSetStatus: {
   readonly ACTIVATING: "ACTIVATING";
@@ -990,20 +990,20 @@ export interface GetReadSetMetadataResponse {
   id: string | undefined;
   arn: string | undefined;
   sequenceStoreId: string | undefined;
-  subjectId?: string;
-  sampleId?: string;
+  subjectId?: string | undefined;
+  sampleId?: string | undefined;
   status: ReadSetStatus | undefined;
-  name?: string;
-  description?: string;
+  name?: string | undefined;
+  description?: string | undefined;
   fileType: FileType | undefined;
   creationTime: Date | undefined;
-  sequenceInformation?: SequenceInformation;
-  referenceArn?: string;
-  files?: ReadSetFiles;
-  statusMessage?: string;
-  creationType?: CreationType;
-  etag?: ETag;
-  creationJobId?: string;
+  sequenceInformation?: SequenceInformation | undefined;
+  referenceArn?: string | undefined;
+  files?: ReadSetFiles | undefined;
+  statusMessage?: string | undefined;
+  creationType?: CreationType | undefined;
+  etag?: ETag | undefined;
+  creationJobId?: string | undefined;
 }
 export declare const ReferenceFile: {
   readonly INDEX: "INDEX";
@@ -1013,12 +1013,12 @@ export type ReferenceFile = (typeof ReferenceFile)[keyof typeof ReferenceFile];
 export interface GetReferenceRequest {
   id: string | undefined;
   referenceStoreId: string | undefined;
-  range?: string;
+  range?: string | undefined;
   partNumber: number | undefined;
-  file?: ReferenceFile;
+  file?: ReferenceFile | undefined;
 }
 export interface GetReferenceResponse {
-  payload?: StreamingBlobTypes;
+  payload?: StreamingBlobTypes | undefined;
 }
 export interface GetReferenceImportJobRequest {
   id: string | undefined;
@@ -1033,13 +1033,13 @@ export declare const ReferenceImportJobItemStatus: {
 export type ReferenceImportJobItemStatus =
   (typeof ReferenceImportJobItemStatus)[keyof typeof ReferenceImportJobItemStatus];
 export interface ImportReferenceSourceItem {
-  sourceFile?: string;
+  sourceFile?: string | undefined;
   status: ReferenceImportJobItemStatus | undefined;
-  statusMessage?: string;
-  name?: string;
-  description?: string;
-  tags?: Record<string, string>;
-  referenceId?: string;
+  statusMessage?: string | undefined;
+  name?: string | undefined;
+  description?: string | undefined;
+  tags?: Record<string, string> | undefined;
+  referenceId?: string | undefined;
 }
 export declare const ReferenceImportJobStatus: {
   readonly CANCELLED: "CANCELLED";
@@ -1057,9 +1057,9 @@ export interface GetReferenceImportJobResponse {
   referenceStoreId: string | undefined;
   roleArn: string | undefined;
   status: ReferenceImportJobStatus | undefined;
-  statusMessage?: string;
+  statusMessage?: string | undefined;
   creationTime: Date | undefined;
-  completionTime?: Date;
+  completionTime?: Date | undefined;
   sources: ImportReferenceSourceItem[] | undefined;
 }
 export interface GetReferenceMetadataRequest {
@@ -1072,8 +1072,8 @@ export declare const ReferenceCreationType: {
 export type ReferenceCreationType =
   (typeof ReferenceCreationType)[keyof typeof ReferenceCreationType];
 export interface ReferenceFiles {
-  source?: FileInformation;
-  index?: FileInformation;
+  source?: FileInformation | undefined;
+  index?: FileInformation | undefined;
 }
 export declare const ReferenceStatus: {
   readonly ACTIVE: "ACTIVE";
@@ -1087,14 +1087,14 @@ export interface GetReferenceMetadataResponse {
   arn: string | undefined;
   referenceStoreId: string | undefined;
   md5: string | undefined;
-  status?: ReferenceStatus;
-  name?: string;
-  description?: string;
+  status?: ReferenceStatus | undefined;
+  name?: string | undefined;
+  description?: string | undefined;
   creationTime: Date | undefined;
   updateTime: Date | undefined;
-  files?: ReferenceFiles;
-  creationType?: ReferenceCreationType;
-  creationJobId?: string;
+  files?: ReferenceFiles | undefined;
+  creationType?: ReferenceCreationType | undefined;
+  creationJobId?: string | undefined;
 }
 export interface GetReferenceStoreRequest {
   id: string | undefined;
@@ -1102,9 +1102,9 @@ export interface GetReferenceStoreRequest {
 export interface GetReferenceStoreResponse {
   id: string | undefined;
   arn: string | undefined;
-  name?: string;
-  description?: string;
-  sseConfig?: SseConfig;
+  name?: string | undefined;
+  description?: string | undefined;
+  sseConfig?: SseConfig | undefined;
   creationTime: Date | undefined;
 }
 export declare const RunExport: {
@@ -1113,7 +1113,7 @@ export declare const RunExport: {
 export type RunExport = (typeof RunExport)[keyof typeof RunExport];
 export interface GetRunRequest {
   id: string | undefined;
-  export?: RunExport[];
+  export?: RunExport[] | undefined;
 }
 export declare const RunLogLevel: {
   readonly ALL: "ALL";
@@ -1123,8 +1123,8 @@ export declare const RunLogLevel: {
 };
 export type RunLogLevel = (typeof RunLogLevel)[keyof typeof RunLogLevel];
 export interface RunLogLocation {
-  engineLogStream?: string;
-  runLogStream?: string;
+  engineLogStream?: string | undefined;
+  runLogStream?: string | undefined;
 }
 export declare const RunRetentionMode: {
   readonly REMOVE: "REMOVE";
@@ -1154,51 +1154,51 @@ export declare const WorkflowType: {
 };
 export type WorkflowType = (typeof WorkflowType)[keyof typeof WorkflowType];
 export interface GetRunResponse {
-  arn?: string;
-  id?: string;
-  status?: RunStatus;
-  workflowId?: string;
-  workflowType?: WorkflowType;
-  runId?: string;
-  roleArn?: string;
-  name?: string;
-  runGroupId?: string;
-  priority?: number;
-  definition?: string;
-  digest?: string;
-  parameters?: __DocumentType;
-  storageCapacity?: number;
-  outputUri?: string;
-  logLevel?: RunLogLevel;
-  resourceDigests?: Record<string, string>;
-  startedBy?: string;
-  creationTime?: Date;
-  startTime?: Date;
-  stopTime?: Date;
-  statusMessage?: string;
-  tags?: Record<string, string>;
-  accelerators?: Accelerators;
-  retentionMode?: RunRetentionMode;
-  failureReason?: string;
-  logLocation?: RunLogLocation;
-  uuid?: string;
-  runOutputUri?: string;
-  storageType?: StorageType;
-  workflowOwnerId?: string;
+  arn?: string | undefined;
+  id?: string | undefined;
+  status?: RunStatus | undefined;
+  workflowId?: string | undefined;
+  workflowType?: WorkflowType | undefined;
+  runId?: string | undefined;
+  roleArn?: string | undefined;
+  name?: string | undefined;
+  runGroupId?: string | undefined;
+  priority?: number | undefined;
+  definition?: string | undefined;
+  digest?: string | undefined;
+  parameters?: __DocumentType | undefined;
+  storageCapacity?: number | undefined;
+  outputUri?: string | undefined;
+  logLevel?: RunLogLevel | undefined;
+  resourceDigests?: Record<string, string> | undefined;
+  startedBy?: string | undefined;
+  creationTime?: Date | undefined;
+  startTime?: Date | undefined;
+  stopTime?: Date | undefined;
+  statusMessage?: string | undefined;
+  tags?: Record<string, string> | undefined;
+  accelerators?: Accelerators | undefined;
+  retentionMode?: RunRetentionMode | undefined;
+  failureReason?: string | undefined;
+  logLocation?: RunLogLocation | undefined;
+  uuid?: string | undefined;
+  runOutputUri?: string | undefined;
+  storageType?: StorageType | undefined;
+  workflowOwnerId?: string | undefined;
 }
 export interface GetRunGroupRequest {
   id: string | undefined;
 }
 export interface GetRunGroupResponse {
-  arn?: string;
-  id?: string;
-  name?: string;
-  maxCpus?: number;
-  maxRuns?: number;
-  maxDuration?: number;
-  creationTime?: Date;
-  tags?: Record<string, string>;
-  maxGpus?: number;
+  arn?: string | undefined;
+  id?: string | undefined;
+  name?: string | undefined;
+  maxCpus?: number | undefined;
+  maxRuns?: number | undefined;
+  maxDuration?: number | undefined;
+  creationTime?: Date | undefined;
+  tags?: Record<string, string> | undefined;
+  maxGpus?: number | undefined;
 }
 export interface GetRunTaskRequest {
   id: string | undefined;
@@ -1215,55 +1215,55 @@ export declare const TaskStatus: {
 };
 export type TaskStatus = (typeof TaskStatus)[keyof typeof TaskStatus];
 export interface GetRunTaskResponse {
-  taskId?: string;
-  status?: TaskStatus;
-  name?: string;
-  cpus?: number;
-  memory?: number;
-  creationTime?: Date;
-  startTime?: Date;
-  stopTime?: Date;
-  statusMessage?: string;
-  logStream?: string;
-  gpus?: number;
-  instanceType?: string;
-  failureReason?: string;
+  taskId?: string | undefined;
+  status?: TaskStatus | undefined;
+  name?: string | undefined;
+  cpus?: number | undefined;
+  memory?: number | undefined;
+  creationTime?: Date | undefined;
+  startTime?: Date | undefined;
+  stopTime?: Date | undefined;
+  statusMessage?: string | undefined;
+  logStream?: string | undefined;
+  gpus?: number | undefined;
+  instanceType?: string | undefined;
+  failureReason?: string | undefined;
 }
 export interface GetSequenceStoreRequest {
   id: string | undefined;
 }
 export interface SequenceStoreS3Access {
-  s3Uri?: string;
-  s3AccessPointArn?: string;
+  s3Uri?: string | undefined;
+  s3AccessPointArn?: string | undefined;
 }
 export interface GetSequenceStoreResponse {
   id: string | undefined;
   arn: string | undefined;
-  name?: string;
-  description?: string;
-  sseConfig?: SseConfig;
+  name?: string | undefined;
+  description?: string | undefined;
+  sseConfig?: SseConfig | undefined;
   creationTime: Date | undefined;
-  fallbackLocation?: string;
-  s3Access?: SequenceStoreS3Access;
-  eTagAlgorithmFamily?: ETagAlgorithmFamily;
+  fallbackLocation?: string | undefined;
+  s3Access?: SequenceStoreS3Access | undefined;
+  eTagAlgorithmFamily?: ETagAlgorithmFamily | undefined;
 }
 export interface GetShareRequest {
   shareId: string | undefined;
 }
 export interface ShareDetails {
-  shareId?: string;
-  resourceArn?: string;
-  resourceId?: string;
-  principalSubscriber?: string;
-  ownerId?: string;
-  status?: ShareStatus;
-  statusMessage?: string;
-  shareName?: string;
-  creationTime?: Date;
-  updateTime?: Date;
+  shareId?: string | undefined;
+  resourceArn?: string | undefined;
+  resourceId?: string | undefined;
+  principalSubscriber?: string | undefined;
+  ownerId?: string | undefined;
+  status?: ShareStatus | undefined;
+  statusMessage?: string | undefined;
+  shareName?: string | undefined;
+  creationTime?: Date | undefined;
+  updateTime?: Date | undefined;
 }
 export interface GetShareResponse {
-  share?: ShareDetails;
+  share?: ShareDetails | undefined;
 }
 export interface GetVariantImportRequest {
   jobId: string | undefined;
@@ -1271,7 +1271,7 @@ export interface GetVariantImportRequest {
 export interface VariantImportItemDetail {
   source: string | undefined;
   jobStatus: JobStatus | undefined;
-  statusMessage?: string;
+  statusMessage?: string | undefined;
 }
 export interface GetVariantImportResponse {
   id: string | undefined;
@@ -1281,10 +1281,10 @@ export interface GetVariantImportResponse {
   statusMessage: string | undefined;
   creationTime: Date | undefined;
   updateTime: Date | undefined;
-  completionTime?: Date;
+  completionTime?: Date | undefined;
   items: VariantImportItemDetail[] | undefined;
   runLeftNormalization: boolean | undefined;
-  annotationFields?: Record<string, string>;
+  annotationFields?: Record<string, string> | undefined;
 }
 export interface GetVariantStoreRequest {
   name: string | undefined;
@@ -1310,33 +1310,33 @@ export type WorkflowExport =
   (typeof WorkflowExport)[keyof typeof WorkflowExport];
 export interface GetWorkflowRequest {
   id: string | undefined;
-  type?: WorkflowType;
-  export?: WorkflowExport[];
-  workflowOwnerId?: string;
+  type?: WorkflowType | undefined;
+  export?: WorkflowExport[] | undefined;
+  workflowOwnerId?: string | undefined;
 }
 export interface GetWorkflowResponse {
-  arn?: string;
-  id?: string;
-  status?: WorkflowStatus;
-  type?: WorkflowType;
-  name?: string;
-  description?: string;
-  engine?: WorkflowEngine;
-  definition?: string;
-  main?: string;
-  digest?: string;
-  parameterTemplate?: Record<string, WorkflowParameter>;
-  storageCapacity?: number;
-  creationTime?: Date;
-  statusMessage?: string;
-  tags?: Record<string, string>;
-  metadata?: Record<string, string>;
-  accelerators?: Accelerators;
+  arn?: string | undefined;
+  id?: string | undefined;
+  status?: WorkflowStatus | undefined;
+  type?: WorkflowType | undefined;
+  name?: string | undefined;
+  description?: string | undefined;
+  engine?: WorkflowEngine | undefined;
+  definition?: string | undefined;
+  main?: string | undefined;
+  digest?: string | undefined;
+  parameterTemplate?: Record<string, WorkflowParameter> | undefined;
+  storageCapacity?: number | undefined;
+  creationTime?: Date | undefined;
+  statusMessage?: string | undefined;
+  tags?: Record<string, string> | undefined;
+  metadata?: Record<string, string> | undefined;
+  accelerators?: Accelerators | undefined;
 }
 export interface ImportReadSetFilter {
-  status?: ReadSetImportJobStatus;
-  createdAfter?: Date;
-  createdBefore?: Date;
+  status?: ReadSetImportJobStatus | undefined;
+  createdAfter?: Date | undefined;
+  createdBefore?: Date | undefined;
 }
 export interface ImportReadSetJobItem {
   id: string | undefined;
@@ -1344,12 +1344,12 @@ export interface ImportReadSetJobItem {
   roleArn: string | undefined;
   status: ReadSetImportJobStatus | undefined;
   creationTime: Date | undefined;
-  completionTime?: Date;
+  completionTime?: Date | undefined;
 }
 export interface ImportReferenceFilter {
-  status?: ReferenceImportJobStatus;
-  createdAfter?: Date;
-  createdBefore?: Date;
+  status?: ReferenceImportJobStatus | undefined;
+  createdAfter?: Date | undefined;
+  createdBefore?: Date | undefined;
 }
 export interface ImportReferenceJobItem {
   id: string | undefined;
@@ -1357,12 +1357,12 @@ export interface ImportReferenceJobItem {
   roleArn: string | undefined;
   status: ReferenceImportJobStatus | undefined;
   creationTime: Date | undefined;
-  completionTime?: Date;
+  completionTime?: Date | undefined;
 }
 export interface ListMultipartReadSetUploadsRequest {
   sequenceStoreId: string | undefined;
-  maxResults?: number;
-  nextToken?: string;
+  maxResults?: number | undefined;
+  nextToken?: string | undefined;
 }
 export interface MultipartReadSetUploadListItem {
   sequenceStoreId: string | undefined;
@@ -1372,253 +1372,253 @@ export interface MultipartReadSetUploadListItem {
   sampleId: string | undefined;
   generatedFrom: string | undefined;
   referenceArn: string | undefined;
-  name?: string;
-  description?: string;
-  tags?: Record<string, string>;
+  name?: string | undefined;
+  description?: string | undefined;
+  tags?: Record<string, string> | undefined;
   creationTime: Date | undefined;
 }
 export interface ListMultipartReadSetUploadsResponse {
-  nextToken?: string;
-  uploads?: MultipartReadSetUploadListItem[];
+  nextToken?: string | undefined;
+  uploads?: MultipartReadSetUploadListItem[] | undefined;
 }
 export interface ListReadSetActivationJobsRequest {
   sequenceStoreId: string | undefined;
-  maxResults?: number;
-  nextToken?: string;
-  filter?: ActivateReadSetFilter;
+  maxResults?: number | undefined;
+  nextToken?: string | undefined;
+  filter?: ActivateReadSetFilter | undefined;
 }
 export interface ListReadSetActivationJobsResponse {
-  nextToken?: string;
-  activationJobs?: ActivateReadSetJobItem[];
+  nextToken?: string | undefined;
+  activationJobs?: ActivateReadSetJobItem[] | undefined;
 }
 export interface ListReadSetExportJobsRequest {
   sequenceStoreId: string | undefined;
-  maxResults?: number;
-  nextToken?: string;
-  filter?: ExportReadSetFilter;
+  maxResults?: number | undefined;
+  nextToken?: string | undefined;
+  filter?: ExportReadSetFilter | undefined;
 }
 export interface ListReadSetExportJobsResponse {
-  nextToken?: string;
-  exportJobs?: ExportReadSetJobDetail[];
+  nextToken?: string | undefined;
+  exportJobs?: ExportReadSetJobDetail[] | undefined;
 }
 export interface ListReadSetImportJobsRequest {
-  maxResults?: number;
-  nextToken?: string;
+  maxResults?: number | undefined;
+  nextToken?: string | undefined;
   sequenceStoreId: string | undefined;
-  filter?: ImportReadSetFilter;
+  filter?: ImportReadSetFilter | undefined;
 }
 export interface ListReadSetImportJobsResponse {
-  nextToken?: string;
-  importJobs?: ImportReadSetJobItem[];
+  nextToken?: string | undefined;
+  importJobs?: ImportReadSetJobItem[] | undefined;
 }
 export interface ReadSetFilter {
-  name?: string;
-  status?: ReadSetStatus;
-  referenceArn?: string;
-  createdAfter?: Date;
-  createdBefore?: Date;
-  sampleId?: string;
-  subjectId?: string;
-  generatedFrom?: string;
-  creationType?: CreationType;
+  name?: string | undefined;
+  status?: ReadSetStatus | undefined;
+  referenceArn?: string | undefined;
+  createdAfter?: Date | undefined;
+  createdBefore?: Date | undefined;
+  sampleId?: string | undefined;
+  subjectId?: string | undefined;
+  generatedFrom?: string | undefined;
+  creationType?: CreationType | undefined;
 }
 export interface ListReadSetsRequest {
   sequenceStoreId: string | undefined;
-  maxResults?: number;
-  nextToken?: string;
-  filter?: ReadSetFilter;
+  maxResults?: number | undefined;
+  nextToken?: string | undefined;
+  filter?: ReadSetFilter | undefined;
 }
 export interface ReadSetListItem {
   id: string | undefined;
   arn: string | undefined;
   sequenceStoreId: string | undefined;
-  subjectId?: string;
-  sampleId?: string;
+  subjectId?: string | undefined;
+  sampleId?: string | undefined;
   status: ReadSetStatus | undefined;
-  name?: string;
-  description?: string;
-  referenceArn?: string;
+  name?: string | undefined;
+  description?: string | undefined;
+  referenceArn?: string | undefined;
   fileType: FileType | undefined;
-  sequenceInformation?: SequenceInformation;
+  sequenceInformation?: SequenceInformation | undefined;
   creationTime: Date | undefined;
-  statusMessage?: string;
-  creationType?: CreationType;
-  etag?: ETag;
+  statusMessage?: string | undefined;
+  creationType?: CreationType | undefined;
+  etag?: ETag | undefined;
 }
 export interface ListReadSetsResponse {
-  nextToken?: string;
+  nextToken?: string | undefined;
   readSets: ReadSetListItem[] | undefined;
 }
 export interface ReadSetUploadPartListFilter {
-  createdAfter?: Date;
-  createdBefore?: Date;
+  createdAfter?: Date | undefined;
+  createdBefore?: Date | undefined;
 }
 export interface ListReadSetUploadPartsRequest {
   sequenceStoreId: string | undefined;
   uploadId: string | undefined;
   partSource: ReadSetPartSource | undefined;
-  maxResults?: number;
-  nextToken?: string;
-  filter?: ReadSetUploadPartListFilter;
+  maxResults?: number | undefined;
+  nextToken?: string | undefined;
+  filter?: ReadSetUploadPartListFilter | undefined;
 }
 export interface ReadSetUploadPartListItem {
   partNumber: number | undefined;
   partSize: number | undefined;
   partSource: ReadSetPartSource | undefined;
   checksum: string | undefined;
-  creationTime?: Date;
-  lastUpdatedTime?: Date;
+  creationTime?: Date | undefined;
+  lastUpdatedTime?: Date | undefined;
 }
 export interface ListReadSetUploadPartsResponse {
-  nextToken?: string;
-  parts?: ReadSetUploadPartListItem[];
+  nextToken?: string | undefined;
+  parts?: ReadSetUploadPartListItem[] | undefined;
 }
 export interface ListReferenceImportJobsRequest {
-  maxResults?: number;
-  nextToken?: string;
+  maxResults?: number | undefined;
+  nextToken?: string | undefined;
   referenceStoreId: string | undefined;
-  filter?: ImportReferenceFilter;
+  filter?: ImportReferenceFilter | undefined;
 }
 export interface ListReferenceImportJobsResponse {
-  nextToken?: string;
-  importJobs?: ImportReferenceJobItem[];
+  nextToken?: string | undefined;
+  importJobs?: ImportReferenceJobItem[] | undefined;
 }
 export interface ReferenceFilter {
-  name?: string;
-  md5?: string;
-  createdAfter?: Date;
-  createdBefore?: Date;
+  name?: string | undefined;
+  md5?: string | undefined;
+  createdAfter?: Date | undefined;
+  createdBefore?: Date | undefined;
 }
 export interface ListReferencesRequest {
   referenceStoreId: string | undefined;
-  maxResults?: number;
-  nextToken?: string;
-  filter?: ReferenceFilter;
+  maxResults?: number | undefined;
+  nextToken?: string | undefined;
+  filter?: ReferenceFilter | undefined;
 }
 export interface ReferenceListItem {
   id: string | undefined;
   arn: string | undefined;
   referenceStoreId: string | undefined;
   md5: string | undefined;
-  status?: ReferenceStatus;
-  name?: string;
-  description?: string;
+  status?: ReferenceStatus | undefined;
+  name?: string | undefined;
+  description?: string | undefined;
   creationTime: Date | undefined;
   updateTime: Date | undefined;
 }
 export interface ListReferencesResponse {
-  nextToken?: string;
+  nextToken?: string | undefined;
   references: ReferenceListItem[] | undefined;
 }
 export interface ReferenceStoreFilter {
-  name?: string;
-  createdAfter?: Date;
-  createdBefore?: Date;
+  name?: string | undefined;
+  createdAfter?: Date | undefined;
+  createdBefore?: Date | undefined;
 }
 export interface ListReferenceStoresRequest {
-  maxResults?: number;
-  nextToken?: string;
-  filter?: ReferenceStoreFilter;
+  maxResults?: number | undefined;
+  nextToken?: string | undefined;
+  filter?: ReferenceStoreFilter | undefined;
 }
 export interface ReferenceStoreDetail {
   arn: string | undefined;
   id: string | undefined;
-  name?: string;
-  description?: string;
-  sseConfig?: SseConfig;
+  name?: string | undefined;
+  description?: string | undefined;
+  sseConfig?: SseConfig | undefined;
   creationTime: Date | undefined;
 }
 export interface ListReferenceStoresResponse {
-  nextToken?: string;
+  nextToken?: string | undefined;
   referenceStores: ReferenceStoreDetail[] | undefined;
 }
 export interface ListRunGroupsRequest {
-  name?: string;
-  startingToken?: string;
-  maxResults?: number;
+  name?: string | undefined;
+  startingToken?: string | undefined;
+  maxResults?: number | undefined;
 }
 export interface RunGroupListItem {
-  arn?: string;
-  id?: string;
-  name?: string;
-  maxCpus?: number;
-  maxRuns?: number;
-  maxDuration?: number;
-  creationTime?: Date;
-  maxGpus?: number;
+  arn?: string | undefined;
+  id?: string | undefined;
+  name?: string | undefined;
+  maxCpus?: number | undefined;
+  maxRuns?: number | undefined;
+  maxDuration?: number | undefined;
+  creationTime?: Date | undefined;
+  maxGpus?: number | undefined;
 }
 export interface ListRunGroupsResponse {
-  items?: RunGroupListItem[];
-  nextToken?: string;
+  items?: RunGroupListItem[] | undefined;
+  nextToken?: string | undefined;
 }
 export interface ListRunsRequest {
-  name?: string;
-  runGroupId?: string;
-  startingToken?: string;
-  maxResults?: number;
-  status?: RunStatus;
+  name?: string | undefined;
+  runGroupId?: string | undefined;
+  startingToken?: string | undefined;
+  maxResults?: number | undefined;
+  status?: RunStatus | undefined;
 }
 export interface RunListItem {
-  arn?: string;
-  id?: string;
-  status?: RunStatus;
-  workflowId?: string;
-  name?: string;
-  priority?: number;
-  storageCapacity?: number;
-  creationTime?: Date;
-  startTime?: Date;
-  stopTime?: Date;
-  storageType?: StorageType;
+  arn?: string | undefined;
+  id?: string | undefined;
+  status?: RunStatus | undefined;
+  workflowId?: string | undefined;
+  name?: string | undefined;
+  priority?: number | undefined;
+  storageCapacity?: number | undefined;
+  creationTime?: Date | undefined;
+  startTime?: Date | undefined;
+  stopTime?: Date | undefined;
+  storageType?: StorageType | undefined;
 }
 export interface ListRunsResponse {
-  items?: RunListItem[];
-  nextToken?: string;
+  items?: RunListItem[] | undefined;
+  nextToken?: string | undefined;
 }
 export interface ListRunTasksRequest {
   id: string | undefined;
-  status?: TaskStatus;
-  startingToken?: string;
-  maxResults?: number;
+  status?: TaskStatus | undefined;
+  startingToken?: string | undefined;
+  maxResults?: number | undefined;
 }
 export interface TaskListItem {
-  taskId?: string;
-  status?: TaskStatus;
-  name?: string;
-  cpus?: number;
-  memory?: number;
-  creationTime?: Date;
-  startTime?: Date;
-  stopTime?: Date;
-  gpus?: number;
-  instanceType?: string;
+  taskId?: string | undefined;
+  status?: TaskStatus | undefined;
+  name?: string | undefined;
+  cpus?: number | undefined;
+  memory?: number | undefined;
+  creationTime?: Date | undefined;
+  startTime?: Date | undefined;
+  stopTime?: Date | undefined;
+  gpus?: number | undefined;
+  instanceType?: string | undefined;
 }
 export interface ListRunTasksResponse {
-  items?: TaskListItem[];
-  nextToken?: string;
+  items?: TaskListItem[] | undefined;
+  nextToken?: string | undefined;
 }
 export interface SequenceStoreFilter {
-  name?: string;
-  createdAfter?: Date;
-  createdBefore?: Date;
+  name?: string | undefined;
+  createdAfter?: Date | undefined;
+  createdBefore?: Date | undefined;
 }
 export interface ListSequenceStoresRequest {
-  maxResults?: number;
-  nextToken?: string;
-  filter?: SequenceStoreFilter;
+  maxResults?: number | undefined;
+  nextToken?: string | undefined;
+  filter?: SequenceStoreFilter | undefined;
 }
 export interface SequenceStoreDetail {
   arn: string | undefined;
   id: string | undefined;
-  name?: string;
-  description?: string;
-  sseConfig?: SseConfig;
+  name?: string | undefined;
+  description?: string | undefined;
+  sseConfig?: SseConfig | undefined;
   creationTime: Date | undefined;
-  fallbackLocation?: string;
-  eTagAlgorithmFamily?: ETagAlgorithmFamily;
+  fallbackLocation?: string | undefined;
+  eTagAlgorithmFamily?: ETagAlgorithmFamily | undefined;
 }
 export interface ListSequenceStoresResponse {
-  nextToken?: string;
+  nextToken?: string | undefined;
   sequenceStores: SequenceStoreDetail[] | undefined;
 }
 export declare const ResourceOwner: {
@@ -1628,13 +1628,13 @@ export declare const ResourceOwner: {
 export type ResourceOwner = (typeof ResourceOwner)[keyof typeof ResourceOwner];
 export interface ListSharesRequest {
   resourceOwner: ResourceOwner | undefined;
-  filter?: Filter;
-  nextToken?: string;
-  maxResults?: number;
+  filter?: Filter | undefined;
+  nextToken?: string | undefined;
+  maxResults?: number | undefined;
 }
 export interface ListSharesResponse {
   shares: ShareDetails[] | undefined;
-  nextToken?: string;
+  nextToken?: string | undefined;
 }
 export interface ListTagsForResourceRequest {
   resourceArn: string | undefined;
@@ -1643,14 +1643,14 @@ export interface ListTagsForResourceResponse {
   tags: Record<string, string> | undefined;
 }
 export interface ListVariantImportJobsFilter {
-  status?: JobStatus;
-  storeName?: string;
+  status?: JobStatus | undefined;
+  storeName?: string | undefined;
 }
 export interface ListVariantImportJobsRequest {
-  maxResults?: number;
-  ids?: string[];
-  nextToken?: string;
-  filter?: ListVariantImportJobsFilter;
+  maxResults?: number | undefined;
+  ids?: string[] | undefined;
+  nextToken?: string | undefined;
+  filter?: ListVariantImportJobsFilter | undefined;
 }
 export interface VariantImportJobItem {
   id: string | undefined;
@@ -1659,22 +1659,22 @@ export interface VariantImportJobItem {
   status: JobStatus | undefined;
   creationTime: Date | undefined;
   updateTime: Date | undefined;
-  completionTime?: Date;
-  runLeftNormalization?: boolean;
-  annotationFields?: Record<string, string>;
+  completionTime?: Date | undefined;
+  runLeftNormalization?: boolean | undefined;
+  annotationFields?: Record<string, string> | undefined;
 }
 export interface ListVariantImportJobsResponse {
-  variantImportJobs?: VariantImportJobItem[];
-  nextToken?: string;
+  variantImportJobs?: VariantImportJobItem[] | undefined;
+  nextToken?: string | undefined;
 }
 export interface ListVariantStoresFilter {
-  status?: StoreStatus;
+  status?: StoreStatus | undefined;
 }
 export interface ListVariantStoresRequest {
-  maxResults?: number;
-  ids?: string[];
-  nextToken?: string;
-  filter?: ListVariantStoresFilter;
+  maxResults?: number | undefined;
+  ids?: string[] | undefined;
+  nextToken?: string | undefined;
+  filter?: ListVariantStoresFilter | undefined;
 }
 export interface VariantStoreItem {
   id: string | undefined;
@@ -1690,39 +1690,39 @@ export interface VariantStoreItem {
   storeSizeBytes: number | undefined;
 }
 export interface ListVariantStoresResponse {
-  variantStores?: VariantStoreItem[];
-  nextToken?: string;
+  variantStores?: VariantStoreItem[] | undefined;
+  nextToken?: string | undefined;
 }
 export interface ListWorkflowsRequest {
-  type?: WorkflowType;
-  name?: string;
-  startingToken?: string;
-  maxResults?: number;
+  type?: WorkflowType | undefined;
+  name?: string | undefined;
+  startingToken?: string | undefined;
+  maxResults?: number | undefined;
 }
 export interface WorkflowListItem {
-  arn?: string;
-  id?: string;
-  name?: string;
-  status?: WorkflowStatus;
-  type?: WorkflowType;
-  digest?: string;
-  creationTime?: Date;
-  metadata?: Record<string, string>;
+  arn?: string | undefined;
+  id?: string | undefined;
+  name?: string | undefined;
+  status?: WorkflowStatus | undefined;
+  type?: WorkflowType | undefined;
+  digest?: string | undefined;
+  creationTime?: Date | undefined;
+  metadata?: Record<string, string> | undefined;
 }
 export interface ListWorkflowsResponse {
-  items?: WorkflowListItem[];
-  nextToken?: string;
+  items?: WorkflowListItem[] | undefined;
+  nextToken?: string | undefined;
 }
 export interface StartReferenceImportJobSourceItem {
   sourceFile: string | undefined;
   name: string | undefined;
-  description?: string;
-  tags?: Record<string, string>;
+  description?: string | undefined;
+  tags?: Record<string, string> | undefined;
 }
 export interface StartReferenceImportJobRequest {
   referenceStoreId: string | undefined;
   roleArn: string | undefined;
-  clientToken?: string;
+  clientToken?: string | undefined;
   sources: StartReferenceImportJobSourceItem[] | undefined;
 }
 export interface StartReferenceImportJobResponse {
@@ -1734,44 +1734,44 @@ export interface StartReferenceImportJobResponse {
 }
 export interface UpdateRunGroupRequest {
   id: string | undefined;
-  name?: string;
-  maxCpus?: number;
-  maxRuns?: number;
-  maxDuration?: number;
-  maxGpus?: number;
+  name?: string | undefined;
+  maxCpus?: number | undefined;
+  maxRuns?: number | undefined;
+  maxDuration?: number | undefined;
+  maxGpus?: number | undefined;
 }
 export interface StartRunRequest {
-  workflowId?: string;
-  workflowType?: WorkflowType;
-  runId?: string;
+  workflowId?: string | undefined;
+  workflowType?: WorkflowType | undefined;
+  runId?: string | undefined;
   roleArn: string | undefined;
-  name?: string;
-  runGroupId?: string;
-  priority?: number;
-  parameters?: __DocumentType;
-  storageCapacity?: number;
-  outputUri?: string;
-  logLevel?: RunLogLevel;
-  tags?: Record<string, string>;
-  requestId?: string;
-  retentionMode?: RunRetentionMode;
-  storageType?: StorageType;
-  workflowOwnerId?: string;
+  name?: string | undefined;
+  runGroupId?: string | undefined;
+  priority?: number | undefined;
+  parameters?: __DocumentType | undefined;
+  storageCapacity?: number | undefined;
+  outputUri?: string | undefined;
+  logLevel?: RunLogLevel | undefined;
+  tags?: Record<string, string> | undefined;
+  requestId?: string | undefined;
+  retentionMode?: RunRetentionMode | undefined;
+  storageType?: StorageType | undefined;
+  workflowOwnerId?: string | undefined;
 }
 export interface StartRunResponse {
-  arn?: string;
-  id?: string;
-  status?: RunStatus;
-  tags?: Record<string, string>;
-  uuid?: string;
-  runOutputUri?: string;
+  arn?: string | undefined;
+  id?: string | undefined;
+  status?: RunStatus | undefined;
+  tags?: Record<string, string> | undefined;
+  uuid?: string | undefined;
+  runOutputUri?: string | undefined;
 }
 export interface StartReadSetActivationJobSourceItem {
   readSetId: string | undefined;
 }
 export interface StartReadSetActivationJobRequest {
   sequenceStoreId: string | undefined;
-  clientToken?: string;
+  clientToken?: string | undefined;
   sources: StartReadSetActivationJobSourceItem[] | undefined;
 }
 export interface StartReadSetActivationJobResponse {
@@ -1784,7 +1784,7 @@ export interface StartReadSetExportJobRequest {
   sequenceStoreId: string | undefined;
   destination: string | undefined;
   roleArn: string | undefined;
-  clientToken?: string;
+  clientToken?: string | undefined;
   sources: ExportReadSet[] | undefined;
 }
 export interface StartReadSetExportJobResponse {
@@ -1799,16 +1799,16 @@ export interface StartReadSetImportJobSourceItem {
   sourceFileType: FileType | undefined;
   subjectId: string | undefined;
   sampleId: string | undefined;
-  generatedFrom?: string;
-  referenceArn?: string;
-  name?: string;
-  description?: string;
-  tags?: Record<string, string>;
+  generatedFrom?: string | undefined;
+  referenceArn?: string | undefined;
+  name?: string | undefined;
+  description?: string | undefined;
+  tags?: Record<string, string> | undefined;
 }
 export interface StartReadSetImportJobRequest {
   sequenceStoreId: string | undefined;
   roleArn: string | undefined;
-  clientToken?: string;
+  clientToken?: string | undefined;
   sources: StartReadSetImportJobSourceItem[] | undefined;
 }
 export interface StartReadSetImportJobResponse {
@@ -1845,15 +1845,15 @@ export interface StartVariantImportRequest {
   destinationName: string | undefined;
   roleArn: string | undefined;
   items: VariantImportItemSource[] | undefined;
-  runLeftNormalization?: boolean;
-  annotationFields?: Record<string, string>;
+  runLeftNormalization?: boolean | undefined;
+  annotationFields?: Record<string, string> | undefined;
 }
 export interface StartVariantImportResponse {
   jobId: string | undefined;
 }
 export interface UpdateVariantStoreRequest {
   name: string | undefined;
-  description?: string;
+  description?: string | undefined;
 }
 export interface UpdateVariantStoreResponse {
   id: string | undefined;
@@ -1866,8 +1866,8 @@ export interface UpdateVariantStoreResponse {
 }
 export interface UpdateWorkflowRequest {
   id: string | undefined;
-  name?: string;
-  description?: string;
+  name?: string | undefined;
+  description?: string | undefined;
 }
 export declare const GetReadSetResponseFilterSensitiveLog: (
   obj: GetReadSetResponse